Citrus Sinensis ID: 046905
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 225 | ||||||
| 224110992 | 2359 | cc-nbs-lrr resistance protein [Populus t | 0.937 | 0.089 | 0.311 | 2e-25 | |
| 147865073 | 1694 | hypothetical protein VITISV_021876 [Viti | 0.911 | 0.121 | 0.360 | 9e-24 | |
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.937 | 0.157 | 0.347 | 2e-22 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.906 | 0.268 | 0.335 | 5e-22 | |
| 302143659 | 922 | unnamed protein product [Vitis vinifera] | 0.906 | 0.221 | 0.343 | 2e-21 | |
| 147777048 | 1460 | hypothetical protein VITISV_009359 [Viti | 0.911 | 0.140 | 0.342 | 2e-21 | |
| 359488108 | 1436 | PREDICTED: disease resistance protein At | 0.906 | 0.142 | 0.343 | 3e-21 | |
| 359488101 | 1677 | PREDICTED: disease resistance protein At | 0.933 | 0.125 | 0.329 | 5e-21 | |
| 296087869 | 1711 | unnamed protein product [Vitis vinifera] | 0.911 | 0.119 | 0.347 | 7e-21 | |
| 359488025 | 1781 | PREDICTED: uncharacterized protein LOC10 | 0.911 | 0.115 | 0.347 | 8e-21 |
| >gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 132/286 (46%), Gaps = 75/286 (26%)
Query: 2 NYLDKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATG----FPVGLLEVLHSLETLHLSCT 57
N D +I+ FP + RL+ V++ G P G L+ + +LETL +SC+
Sbjct: 1376 NGEDPATSIIWCCQFPGKFYSRLK---VIKLKNFYGKLDPIPFGFLQSIRNLETLSVSCS 1432
Query: 58 SYKEIFSNEGCLE--------------------------------SHVGVSKLALIKIS- 84
S+++IF NEGC++ +H+ K LI +
Sbjct: 1433 SFEKIFLNEGCVDKDEDIRGPVDSDEYTRMRARLKNLVIDSVQDITHIWEPKYRLISVVQ 1492
Query: 85 ----------------------FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122
F NL L V SC L NL+ SS AKSL +LV L V C
Sbjct: 1493 NLESLKMQSCNSLVNLAPSTVLFHNLETLDVHSCHGLSNLLTSSTAKSLGQLVKLIVVNC 1552
Query: 123 SAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLE 182
+T++VA G + ++I+FSKL Y+ ++ LENLTSFC G +Y F FPSL+
Sbjct: 1553 KLVTEIVAK--------QGGEINDDIIFSKLEYLELVRLENLTSFCPG--NYNFIFPSLK 1602
Query: 183 DLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC---CWDNDLNTTI 225
++V C M+IF+ G TPK ++ + + CW +LN T+
Sbjct: 1603 GMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNEKCWHGNLNATL 1648
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 123/261 (47%), Gaps = 56/261 (21%)
Query: 11 IFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHLS-CTSYKEIFSNEGC 68
I+Q FP F RLR L V D+ P +L+ LH+LE L + C+S KEIF EG
Sbjct: 1348 IWQEQFPMDSFPRLRCLNVRGYGDILVVIPSFMLQRLHNLEKLDVRRCSSVKEIFQLEGL 1407
Query: 69 LESHVGVSKLALIKISFGNL---THL-----------------VVFSCKKLMNLVP---- 104
E + L +I G+L THL V+SC L++LVP
Sbjct: 1408 DEENQAQRLGRLREIILGSLPALTHLWKENSKSGLDLQSLESLEVWSCNSLISLVPCSVS 1467
Query: 105 --------------------SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANL 144
SVAKSL +L L++ G M +VVA+ G +
Sbjct: 1468 FQNLDTLDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMMEEVVAN--------EGGEV 1519
Query: 145 EEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPK 204
+EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MKIF+ + TPK
Sbjct: 1520 VDEIAFYKLQHMVLLCLPNLTSFNSG--GYIFSFPSLEHMVVEECPKMKIFSPSFVTTPK 1577
Query: 205 RVDAWYSESACCWDNDLNTTI 225
++ W NDLNTTI
Sbjct: 1578 LERVEVADDEWHWHNDLNTTI 1598
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 120/256 (46%), Gaps = 45/256 (17%)
Query: 11 IFQGDFPRHLFGRLRRLEVVR-DDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGC 68
I+Q FP F RLR L + D+ P +L+ LH+LE L + SC S KE+ EG
Sbjct: 1016 IWQEQFPVESFCRLRVLSICEYRDILVVIPSSMLQRLHTLEKLTVRSCGSVKEVVQLEGL 1075
Query: 69 LESHVGVSKLALIK---------------------ISFGNLTHLVVFSCKKLMNLVPSSV 107
++ LA ++ F NL L ++ C LMNLVPSSV
Sbjct: 1076 VDEENHFRALARLRELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSV 1135
Query: 108 AKSLERLVTLRVSGCSAMTQ-----VVASCDQ------GDSDV-------AGANLEEEIL 149
S L +L +S C ++ + S Q G SD+ G N +EI
Sbjct: 1136 --SFHNLASLDISYCCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANEGENAGDEIT 1193
Query: 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAW 209
F KL + + L NLTSFCSGV Y+ FP LE ++V C MKIF+ G L+TP+
Sbjct: 1194 FCKLEEIELCVLPNLTSFCSGV--YSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRVE 1251
Query: 210 YSESACCWDNDLNTTI 225
+ W +DLNTTI
Sbjct: 1252 VGNNKEHWKDDLNTTI 1267
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 122/262 (46%), Gaps = 58/262 (22%)
Query: 11 IFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHLS-CTSYKEIFSNEGC 68
I+Q FP F RLR L+V D+ P +L+ H+LE L++ C+S KEIF EG
Sbjct: 485 IWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLEG- 543
Query: 69 LESHVGVSKLALIK---------------------ISFGNLTHLVVFSCKKLMNLVP--- 104
L+ +L ++ + +L L V++C L++LVP
Sbjct: 544 LDEENQAQRLGRLREIWLRDLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLVPCSV 603
Query: 105 ---------------------SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGAN 143
SVAKSL +L L++ G M +VVA+ G
Sbjct: 604 SFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGLHMMEEVVAN--------EGGE 655
Query: 144 LEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITP 203
+EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MKIF+ + TP
Sbjct: 656 AVDEIAFYKLQHMVLLCLPNLTSFNSG--GYIFSFPSLEHMVVEECPKMKIFSPSLVTTP 713
Query: 204 KRVDAWYSESACCWDNDLNTTI 225
K ++ W NDLNTTI
Sbjct: 714 KLERVEVADDEWHWHNDLNTTI 735
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 124/262 (47%), Gaps = 58/262 (22%)
Query: 11 IFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGC 68
I+ FP F RLR L V D+ P +L+ LH+LE L + SC+S KE+F EG
Sbjct: 661 IWPEQFPVDSFPRLRVLHVHDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL 720
Query: 69 LESH----------------VGVSKL----ALIKISFGNLTHLVVFSCKKLMNLVPS--- 105
E + G+++L + + +L L V++C L+NLVPS
Sbjct: 721 DEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLESLEVWNCGSLINLVPSSVS 780
Query: 106 ---------------------SVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANL 144
SVAKSL +L TL++ M +VVA+ G
Sbjct: 781 FQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVAN--------EGGEA 832
Query: 145 EEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPK 204
+EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MK+F S L+TP
Sbjct: 833 TDEITFYKLQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMF-SPSLVTPP 889
Query: 205 RVDAW-YSESACCWDNDLNTTI 225
R+ + W +DLNT I
Sbjct: 890 RLKRIKVGDEEWPWQDDLNTAI 911
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 121/260 (46%), Gaps = 55/260 (21%)
Query: 11 IFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGC 68
I+ FP F RLR L V D+ P +L++LH+LE L + C+S KE+F EG
Sbjct: 1187 IWLEQFPVDSFPRLRLLRVCDYRDILVVIPFFMLQILHNLEVLEVRGCSSVKEVFQLEGL 1246
Query: 69 LESHVG--VSKLALIKISFGNLTHL-----------------VVFSCKKLMNLVPSS--- 106
E + + +L I + LTHL VV +C L+NLVPSS
Sbjct: 1247 DEENQAKRLGRLREIMLDDLGLTHLWKENSKPGLDLQSLESLVVRNCVSLINLVPSSVSF 1306
Query: 107 ---------------------VAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLE 145
VAKSL +L TL++ G M +VVA+ G
Sbjct: 1307 QNLATLDVQSCGRLRSLISPLVAKSLVKLKTLKIGGSDMMEEVVAN--------EGGETT 1358
Query: 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKR 205
+EI F L++M +L L NLTSF SG Y F FPSLE ++V C MK+F+ + TP+
Sbjct: 1359 DEITFYILQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMFSPSLVTTPRL 1416
Query: 206 VDAWYSESACCWDNDLNTTI 225
+ +DLNTTI
Sbjct: 1417 ERIKVGDDEWPLQDDLNTTI 1436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 124/262 (47%), Gaps = 58/262 (22%)
Query: 11 IFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGC 68
I+ FP F RLR L V D+ P +L+ LH+LE L + SC+S KE+F EG
Sbjct: 1148 IWPEQFPVDSFPRLRVLHVHDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLEGL 1207
Query: 69 LESH----------------VGVSKL----ALIKISFGNLTHLVVFSCKKLMNLVPS--- 105
E + G+++L + + +L L V++C L+NLVPS
Sbjct: 1208 DEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLESLEVWNCGSLINLVPSSVS 1267
Query: 106 ---------------------SVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANL 144
SVAKSL +L TL++ M +VVA+ G
Sbjct: 1268 FQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMMEEVVAN--------EGGEA 1319
Query: 145 EEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPK 204
+EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MK+F S L+TP
Sbjct: 1320 TDEITFYKLQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMF-SPSLVTPP 1376
Query: 205 RVDAW-YSESACCWDNDLNTTI 225
R+ + W +DLNT I
Sbjct: 1377 RLKRIKVGDEEWPWQDDLNTAI 1398
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 126/267 (47%), Gaps = 57/267 (21%)
Query: 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRD-DVATGFPVGLLEVLHSLETLHL-SCTSYKEI 62
+KD + I+ P F RLR L+V + D+ P +L +LH+LE L++ C+S KE+
Sbjct: 1257 NKDTE-IWPDQLPVDCFPRLRVLDVCENRDILVVIPSFMLHILHNLEVLNVVECSSVKEV 1315
Query: 63 FSNEGCLESHVG--VSKLALIKI-SFGNLTHLVV-----------------FSCKKLMNL 102
F EG E + + +L I++ LTHL ++C L+NL
Sbjct: 1316 FQLEGLDEENQAKRLGRLREIRLHDLPALTHLWKENSKSGLDLQSLESLEEWNCDSLINL 1375
Query: 103 VPS------------------------SVAKSLERLVTLRVSGCSAMTQVVASCDQGDSD 138
VPS SVAKSL +L TL++ M +VVA+
Sbjct: 1376 VPSPVSFQNLATLDVHSCGSLRSLISPSVAKSLVKLKTLKIRRSDMMEEVVAN------- 1428
Query: 139 VAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG 198
G +EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MK+F+
Sbjct: 1429 -EGGEAIDEITFYKLQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMFSPS 1485
Query: 199 DLITPKRVDAWYSESACCWDNDLNTTI 225
+ TP+ + W +D NTTI
Sbjct: 1486 LVTTPRLERIKVGDDEWPWQDDPNTTI 1512
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 126/268 (47%), Gaps = 63/268 (23%)
Query: 4 LDKDIQVIFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHLS-CTSYKE 61
L++D + I+ FP F RLR L+V D+ P +L+ LH+LE L + C+S +E
Sbjct: 1437 LNRDTE-IWPEQFPMDSFPRLRVLDVYDYRDILVVIPSFMLQRLHNLEVLKVGRCSSVEE 1495
Query: 62 IFSNEGCLESHVG--VSKLALIKIS-FGNLTHL-----------------VVFSCKKLMN 101
+F EG E + + +L IK+ LTHL V CKKL+N
Sbjct: 1496 VFQLEGLDEENQAKRLGQLREIKLDDLPGLTHLWKENSKPGLDLQSLESLEVLDCKKLIN 1555
Query: 102 LVPS------------------------SVAKSLERLVTLRVSGCSAMTQVVASCDQGDS 137
LVPS SVAKSL +L TL++ G M +VVA+
Sbjct: 1556 LVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSDMMEEVVAN------ 1609
Query: 138 DVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS 197
G +EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MK+F+
Sbjct: 1610 --EGGEATDEITFYKLQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMFSP 1665
Query: 198 GDLITPKRVDAWYSESACCWDNDLNTTI 225
D W + +DLNTTI
Sbjct: 1666 RLERIKVGDDKWPRQ------DDLNTTI 1687
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 126/268 (47%), Gaps = 63/268 (23%)
Query: 4 LDKDIQVIFQGDFPRHLFGRLRRLEVV-RDDVATGFPVGLLEVLHSLETLHLS-CTSYKE 61
L++D + I+ FP F RLR L+V D+ P +L+ LH+LE L + C+S +E
Sbjct: 1507 LNRDTE-IWPEQFPMDSFPRLRVLDVYDYRDILVVIPSFMLQRLHNLEVLKVGRCSSVEE 1565
Query: 62 IFSNEGCLESHVG--VSKLALIKIS-FGNLTHL-----------------VVFSCKKLMN 101
+F EG E + + +L IK+ LTHL V CKKL+N
Sbjct: 1566 VFQLEGLDEENQAKRLGQLREIKLDDLPGLTHLWKENSKPGLDLQSLESLEVLDCKKLIN 1625
Query: 102 LVPS------------------------SVAKSLERLVTLRVSGCSAMTQVVASCDQGDS 137
LVPS SVAKSL +L TL++ G M +VVA+
Sbjct: 1626 LVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSDMMEEVVAN------ 1679
Query: 138 DVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS 197
G +EI F KL++M +L L NLTSF SG Y F FPSLE ++V C MK+F+
Sbjct: 1680 --EGGEATDEITFYKLQHMELLYLPNLTSFSSG--GYIFSFPSLEQMLVKECPKMKMFSP 1735
Query: 198 GDLITPKRVDAWYSESACCWDNDLNTTI 225
D W + +DLNTTI
Sbjct: 1736 RLERIKVGDDKWPRQ------DDLNTTI 1757
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_scaffold_329000001 | cc-nbs-lrr resistance protein (2359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.38 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.33 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 98.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 98.95 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.31 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.15 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.1 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.93 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.83 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.79 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.77 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.76 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.72 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.72 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.72 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.68 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.61 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 97.46 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.45 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.4 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 97.38 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.34 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.26 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.23 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.18 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.05 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.04 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.04 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 96.96 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.86 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 96.82 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.76 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.43 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 96.16 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.89 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.87 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.8 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 95.69 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 95.67 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 95.16 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.14 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 94.93 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.03 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 93.55 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 92.88 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 92.67 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 92.33 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 92.17 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 91.11 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 90.49 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 87.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 82.73 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 80.94 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=125.24 Aligned_cols=101 Identities=27% Similarity=0.424 Sum_probs=62.7
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccc
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKI 83 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~ 83 (225)
+++++.+|.+- ..+++|+.|+++++..+..+|. +..+++|++|++ +|..+..++.. ..
T Consensus 620 ~s~l~~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s----------------i~ 678 (1153)
T PLN03210 620 GSKLEKLWDGV---HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS----------------IQ 678 (1153)
T ss_pred Ccccccccccc---ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchh----------------hh
Confidence 44555566543 3466777777776555556664 456777777777 77777665432 23
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVV 129 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~ 129 (225)
.+++|+.|++.+|..++.+. .. ..+++|+.|.+.+|..++.++
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp--~~-i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILP--TG-INLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccC--Cc-CCCCCCCEEeCCCCCCccccc
Confidence 46677777777777776652 11 256677777777776655443
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=120.35 Aligned_cols=176 Identities=17% Similarity=0.258 Sum_probs=104.5
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-------------------cccc----
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-------------------SHVG---- 74 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-------------------~~l~---- 74 (225)
..+++|+.|.+.+|..+..+|.. ++++++|+.|++ +|.+++.++....... .++.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 34678888888877777777765 567777888877 7777666654211100 0000
Q ss_pred -cc---cccc------------------------------ccccccccceEeccCccCccccCCchHHhhcccCCEEEEe
Q 046905 75 -VS---KLAL------------------------------IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVS 120 (225)
Q Consensus 75 -~~---~l~~------------------------------~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~ 120 (225)
.. .++. ....+++|+.|++.+|+.+..+ |...+++++|+.|+|.
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIE 810 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECC
Confidence 00 0000 0011356777777777766665 4566788888888888
Q ss_pred cCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC----------------ccceeCCCccEE
Q 046905 121 GCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV----------------DYTFKFPSLEDL 184 (225)
Q Consensus 121 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~----------------~~~~~~p~L~~L 184 (225)
+|.+++.++.. ..+++|+.|.+.+|.+++.++.... .....+++|+.|
T Consensus 811 ~C~~L~~LP~~----------------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 811 NCINLETLPTG----------------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCcCeeCCC----------------CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEE
Confidence 88887776521 1355666666666655544321100 001236677777
Q ss_pred EEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 185 IVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 185 ~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
++.+|++|+.+|.....+++|+.+.+.++
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCC
Confidence 77777777777766566677777776654
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=103.04 Aligned_cols=63 Identities=8% Similarity=-0.061 Sum_probs=39.7
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|+.|.+.++.-...++. ....+++|++|++.+|.-...+|.....+++|+.+++..+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPP----SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred hCCCCCCEEECcCCeeeccCch----hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 3456667776666532222221 12347788888888885544567666778888888887553
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=102.20 Aligned_cols=65 Identities=8% Similarity=-0.187 Sum_probs=46.1
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++.--..++.. ...+++|++|++.+|.-...+|..+..+++|+++.+..+..
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChh----HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 345677888888776543333322 24588999999999865556787778889999999986544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.8e-06 Score=72.71 Aligned_cols=14 Identities=57% Similarity=1.094 Sum_probs=7.9
Q ss_pred CCccEEEEeCCCCC
Q 046905 179 PSLEDLIVTGCCNM 192 (225)
Q Consensus 179 p~L~~L~I~~C~~L 192 (225)
++|++|.|.+|..+
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 35666666666544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-06 Score=77.27 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=26.8
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
|...+.+|+.|+++++. +..+|..+ .++|+.|+++...+..++
T Consensus 215 P~~l~~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 215 PENLQGNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELP 257 (754)
T ss_pred ChhhccCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCC
Confidence 44455689999988754 45566532 357888888333455443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-07 Score=79.48 Aligned_cols=182 Identities=17% Similarity=0.100 Sum_probs=97.6
Q ss_pred CCccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccccccccccccccc
Q 046905 3 YLDKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIK 82 (225)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~ 82 (225)
++.+++.++-.|.|-. +.++++|++..+.....-..| +-++++|+.|+++-..++.+....+
T Consensus 252 lqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~-lfgLt~L~~L~lS~NaI~rih~d~W--------------- 313 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGW-LFGLTSLEQLDLSYNAIQRIHIDSW--------------- 313 (873)
T ss_pred hhhcCcccccCcceee--ecccceeecccchhhhhhccc-ccccchhhhhccchhhhheeecchh---------------
Confidence 4556666666666544 667777777654432222222 3457777777775555555533221
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-----CCCC-----cccc---ccccccc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-----GDSD-----VAGA---NLEEEIL 149 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-----~~~~-----~~~~---~~~~~~~ 149 (225)
...++|+.|++++- .+..+. +.....+..|++|.++.-. +..+-..... ...+ .+.+ .......
T Consensus 314 sftqkL~~LdLs~N-~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 314 SFTQKLKELDLSSN-RITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred hhcccceeEecccc-ccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 12466777777654 344442 3334455556666655432 2221100000 0000 0000 0122335
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEec
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYS 211 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~ 211 (225)
+|+|+.|.+.+- +++++.... +..+++||+|++.+-+ +.++ |..+.++ .|+++.+.
T Consensus 391 l~~LrkL~l~gN-qlk~I~krA---fsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTGN-QLKSIPKRA---FSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecCc-eeeecchhh---hccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 788999888764 677777653 3468899999988854 4444 4555555 88888886
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-07 Score=80.43 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=28.1
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
..|+.|++|.+ +|..|-.+|.++..++.|+.+++..
T Consensus 336 cRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 336 CRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred hhhHHHHHhcc-cccceeechhhhhhcCCcceeeccC
Confidence 35778888886 4567778998888889999888863
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1e-05 Score=76.12 Aligned_cols=134 Identities=23% Similarity=0.331 Sum_probs=95.9
Q ss_pred HHhccCCcEEEE-eccccceEeccCCcccccccccccccccc-cccccceEeccCccCccccCCchHHhhcccCCEEEEe
Q 046905 43 LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKI-SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVS 120 (225)
Q Consensus 43 ~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~ 120 (225)
+..+.+|+.|.| +|...+........ .... .|+++..+.+.+|..++... +....|+|+.|++.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~-----------~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEES-----------LIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLV 778 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccc-----------cchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEe
Confidence 456788888888 88765443211100 0112 38899999999999988763 44567999999999
Q ss_pred cCcccccccccccCCCCCccccccccccccccccee-ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCC
Q 046905 121 GCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYM-TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD 199 (225)
Q Consensus 121 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L-~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~ 199 (225)
.|..++++++....... ....+..|.++..+ .+.+.+.++.++... ..++.|+.+.+..||+++++|...
T Consensus 779 ~~~~~e~~i~~~k~~~~-----l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~----l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLE-----LKELILPFNKLEGLRMLCSLGGLPQLYWLP----LSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cccccccCCCHHHHhhh-----cccEEecccccccceeeecCCCCceeEecc----cCccchhheehhcCcccccCcccc
Confidence 99998887654322100 00135678888888 588999998888755 667889999999999999999653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-06 Score=78.54 Aligned_cols=139 Identities=22% Similarity=0.248 Sum_probs=83.1
Q ss_pred ccccccCccEEEEee-CCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 17 PRHLFGRLRRLEVVR-DDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
..++=.||+.|+|+| ......+|......||+|+.|.| +-.-..+-+. ....+||||.+|||+
T Consensus 117 n~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~---------------~lc~sFpNL~sLDIS 181 (699)
T KOG3665|consen 117 NEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS---------------QLCASFPNLRSLDIS 181 (699)
T ss_pred hHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH---------------HHhhccCccceeecC
Confidence 334556899999998 44455666654567999999998 4211110000 123469999999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee--ecCCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF--CSGVV 172 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~--~~~~~ 172 (225)
++ +++.+ ....++++|+.|.+.+.+- +.- .. -.....+.+|+.|+|+.=.+...- .....
T Consensus 182 ~T-nI~nl---~GIS~LknLq~L~mrnLe~-e~~---~~----------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl 243 (699)
T KOG3665|consen 182 GT-NISNL---SGISRLKNLQVLSMRNLEF-ESY---QD----------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYL 243 (699)
T ss_pred CC-CccCc---HHHhccccHHHHhccCCCC-Cch---hh----------HHHHhcccCCCeeeccccccccchHHHHHHH
Confidence 99 56665 5677899999998887652 110 00 013345677888887654443221 00000
Q ss_pred ccceeCCCccEEEEeC
Q 046905 173 DYTFKFPSLEDLIVTG 188 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~ 188 (225)
++...+|.|+.|+.++
T Consensus 244 ec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSG 259 (699)
T ss_pred HhcccCccccEEecCC
Confidence 1123477777777654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.4e-05 Score=69.33 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.4
Q ss_pred ccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 152 KLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.|+.|.+.++ +++.++.. ..++|+.|.+.+| +++.+|..+ .++|+.|++.++..
T Consensus 305 sL~~L~Ls~N-~Lt~LP~~------l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~L 358 (754)
T PRK15370 305 GITHLNVQSN-SLTALPET------LPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQI 358 (754)
T ss_pred hHHHHHhcCC-ccccCCcc------ccccceeccccCC-ccccCChhh--cCcccEEECCCCCC
Confidence 4666666553 34444322 2478999999988 577788643 36899999886643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1e-05 Score=68.82 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=23.3
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.++.|+.|.+..|+ +..--....+..+|+|+.|++..-.
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence 46777888888773 3321112234567777777777654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=48.57 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=39.6
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
++|++|+++++. +..+|...+..+++|++|+++...+..++.. .+..+++|++|++++++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~---------------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPD---------------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETT---------------TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHH---------------HHcCCCCCCEEeCcCCc
Confidence 467888888763 4556655567788888888855566666542 23346777888777763
|
... |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.4e-07 Score=67.13 Aligned_cols=82 Identities=24% Similarity=0.231 Sum_probs=56.1
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
++++..|.+++.. +...|.. +..+.+|++|.+.-..+++++. ...++|+|+.|.+. ..+|.
T Consensus 32 ~s~ITrLtLSHNK-l~~vppn-ia~l~nlevln~~nnqie~lp~----------------~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPN-IAELKNLEVLNLSNNQIEELPT----------------SISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred hhhhhhhhcccCc-eeecCCc-HHHhhhhhhhhcccchhhhcCh----------------hhhhchhhhheecc-hhhhh
Confidence 5677788888654 4445554 5678888888884455665543 34568888888876 44555
Q ss_pred ccCCchHHhhcccCCEEEEecCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.+ |...+++|.|+.|++.+-.
T Consensus 93 ~l--prgfgs~p~levldltynn 113 (264)
T KOG0617|consen 93 IL--PRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred cC--ccccCCCchhhhhhccccc
Confidence 44 5677889999999888754
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=7e-05 Score=64.33 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=20.3
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
+|+.|.|++|..++.+ +... .++|+.|+|.+|.++..+
T Consensus 73 sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccC--Cchh--hhhhhheEccCccccccc
Confidence 4666666666666544 2111 245666666666555433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.9e-05 Score=46.28 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=36.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCc
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESA 214 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~ 214 (225)
|+|++|.+.++ +++.+..+. ...+++|++|++.++ +++.++.+ +..+++|++|++.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTT---TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666 666665432 234677777777754 56666543 3567777777776543
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.2e-05 Score=72.86 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=27.2
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEec
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFS 64 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~ 64 (225)
++.|++|+++++.....+|.. ++.+-+|++|++.+..+..+|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred CcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch
Confidence 556666666666666666665 5667777777775555555543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.4e-06 Score=69.55 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=94.4
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
+|+.|+++.......--..++..+..||.|.+ +- .+.+-.. .....=.+|+.|+|+.|.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~---------------~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIV---------------NTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHH---------------HHHhccccceeeccccccccch
Confidence 58888888743322222233566777777766 32 1111000 0111124677777777777766
Q ss_pred cCCchHHhhcccCCEEEEecCcccccccccc----cC--CCCCcccc------c--ccccccccccceeecCcCCCccee
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVASC----DQ--GDSDVAGA------N--LEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~----~~--~~~~~~~~------~--~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
....-...++..|.+|.++.|.--.+.+..- .. ...+.++. + ..-....|.|.+|+++++-.|+.-
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 5333344566777777777776433322110 00 00111111 0 012235688999999999888764
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCC---CCCCCCeeEEEec
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG---DLITPKRVDAWYS 211 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~---~~~~~~L~~l~i~ 211 (225)
+.. ..+.|+.|++|.++.|-.+- |.. +.+.|+|.++++.
T Consensus 330 ~~~---~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 330 CFQ---EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHH---HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEec
Confidence 432 24578999999999997664 432 2567899999886
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=65.31 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=28.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEec
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFS 64 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~ 64 (225)
+|....++|+.|.+.++. +..+|. .+++|++|+++...+..++.
T Consensus 216 LP~~l~~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~ 259 (788)
T PRK15387 216 LPDCLPAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV 259 (788)
T ss_pred CCcchhcCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccC
Confidence 455445678888888644 445664 25888999984456776653
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.9e-05 Score=63.78 Aligned_cols=64 Identities=11% Similarity=-0.063 Sum_probs=35.6
Q ss_pred ccccccceeecCcCCCcceeecCC--CccceeCCCccEEEEeCCCCCc-----eecCCCCCCCCeeEEEecCC
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGV--VDYTFKFPSLEDLIVTGCCNMK-----IFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~--~~~~~~~p~L~~L~I~~C~~L~-----~lp~~~~~~~~L~~l~i~~~ 213 (225)
..+++|++|.+.+++ +....... .......+.|++|.+.+|. ++ .+.......++|++++++.+
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 356778888888764 32211000 0000123788999998884 32 22333345578888888754
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.4e-05 Score=68.05 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..+.+|+.+.+.++..-..........+++++.|+++-.=+..+... ......||+|+.|.++.- +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-------------~~i~eqLp~Le~LNls~N-r 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-------------LKIAEQLPSLENLNLSSN-R 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-------------HHHHHhcccchhcccccc-c
Confidence 35777888888775532222113456788888888722111111111 122345899999999876 4
Q ss_pred ccccCCchHHhhcccCCEEEEecCccc-ccc-------cccccC-CCCC-cccccccccccccccceeecCcCCCcceee
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAM-TQV-------VASCDQ-GDSD-VAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L-~~l-------~~~~~~-~~~~-~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+...........+++|+.|.++.|.-- +++ |..... -+.. ...+.......+..|+.|+|++-+.+. +.
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~ 262 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FD 262 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cc
Confidence 554433334457899999999999721 111 000000 0000 000111233455677778777765543 22
Q ss_pred cCCCccceeCCCccEEEEeCCC--CCceecCC-----CCCCCCeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCC--NMKIFTSG-----DLITPKRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~--~L~~lp~~-----~~~~~~L~~l~i~~~~~ 215 (225)
.+. ....||.|+.|++..|. .+. +|.. ...+++|++|.+.++..
T Consensus 263 ~~~--~~~~l~~L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 263 QGY--KVGTLPGLNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccc--ccccccchhhhhccccCcchhc-CCCccchhhhcccccceeeecccCcc
Confidence 221 23569999999998773 333 3433 24689999999987654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=4.6e-05 Score=62.25 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=53.4
Q ss_pred cccceEeccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 86 GNLTHLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
++|+.|.|++|.+--... ........|+|.+|++++|..++.-. ......|+.|++|.+..|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--------------~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--------------FQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH--------------HHHHHhcchheeeehhhhcCC
Confidence 467777777775422211 01233467888888888887654311 024457888999998888665
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCN 191 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~ 191 (225)
- +..- ......|+|.+|++.||-.
T Consensus 352 ~--p~~~-~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 352 I--PETL-LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred C--hHHe-eeeccCcceEEEEeccccC
Confidence 1 1100 0113478899999988743
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0001 Score=61.24 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=37.3
Q ss_pred cccccceeecCcCCCcceeecCC-CccceeCCCccEEEEeCCCCCce-----ecCCC-CCCCCeeEEEecCCce
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGV-VDYTFKFPSLEDLIVTGCCNMKI-----FTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|.+.+|. +....... ......+++|++|++++|+ +.. +.... ...++|+.+++..+..
T Consensus 191 ~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 191 ANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 44689999998874 22111000 0011347899999999985 332 11111 1247899999976543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00036 Score=64.89 Aligned_cols=174 Identities=17% Similarity=0.079 Sum_probs=85.0
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCc-ccccccccccccccccccccceEeccCccCc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGC-LESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~-~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
+.+|+.|.+.++. +..+|. .+++|++|+++-..+..++..... ....+....+.......++|+.|+++++ ++
T Consensus 281 p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~L 354 (788)
T PRK15387 281 PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QL 354 (788)
T ss_pred hhhcCEEECcCCc-cccccc----cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCC-cc
Confidence 4567778887654 344554 257888888822355555432110 0000111111000011246888888775 55
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCC-CCCccccc-ccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG-DSDVAGAN-LEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~-~~~~~~~~-~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+.+. . ..++|+.|++.+.. +..++...... ..+.+.-. ..-....++|+.|.+.+.. |+.++. .
T Consensus 355 s~LP--~---lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~-------l 420 (788)
T PRK15387 355 ASLP--T---LPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPM-------L 420 (788)
T ss_pred CCCC--C---CCcccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCc-------c
Confidence 5542 1 12345555555432 33332111000 00000000 0000123467777777653 544432 1
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+.+|+.|++++. +++.+|..+..+++|+.++++++.+
T Consensus 421 ~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 346777888774 6778887777788888888876644
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=5.3e-05 Score=64.28 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=69.0
Q ss_pred CccEEEEeeCCccccCCHhHH-HhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVRDDVATGFPVGLL-EVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.|+.|..++|......+.+.+ .+.++|++|.+ +|..+.... +.....+.+.|+.+++.+|....
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------------ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------------FTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------------hhhhhcCChhhhhhcccccceeh
Confidence 445555554443443333333 24455555555 555433221 11222345566666666664443
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS 180 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~ 180 (225)
+-...+...+.|.|+.|.++.|+.+..- +-. . ........-.|+.+++.+||.++.-... ....+++
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~----gi~--~----l~~~~c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~ 427 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDE----GIR--H----LSSSSCSLEGLEVLELDNCPLITDATLE---HLSICRN 427 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhh----hhh--h----hhhccccccccceeeecCCCCchHHHHH---HHhhCcc
Confidence 3211223345666666666666542221 000 0 0011223445677777777776543321 1234677
Q ss_pred ccEEEEeCCCCCce
Q 046905 181 LEDLIVTGCCNMKI 194 (225)
Q Consensus 181 L~~L~I~~C~~L~~ 194 (225)
||.+++.+|....+
T Consensus 428 Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 428 LERIELIDCQDVTK 441 (483)
T ss_pred cceeeeechhhhhh
Confidence 77777777776553
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00011 Score=65.82 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=90.1
Q ss_pred cccCccEEEEee-CCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc----ccccc---ccc-cccccccccce
Q 046905 20 LFGRLRRLEVVR-DDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES----HVGVS---KLA-LIKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~----~l~~~---~l~-~~~~~l~~L~~ 90 (225)
.++.||.+.+++ .-+-+.+|.. +..+..|..|+++-..+.++|..-..... ++... .++ +.+.++.-|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 377888888877 3344566766 45677888888765667766643222111 11111 111 12334556677
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC----cce
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN----LTS 166 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----L~~ 166 (225)
|++++- +|+.+ |.....+.+|++|.+++-+ |... +...+|+++.|....+.+ +-.
T Consensus 155 LDLS~N-rLe~L--PPQ~RRL~~LqtL~Ls~NP-L~hf-----------------QLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 155 LDLSNN-RLEML--PPQIRRLSMLQTLKLSNNP-LNHF-----------------QLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred hccccc-hhhhc--CHHHHHHhhhhhhhcCCCh-hhHH-----------------HHhcCccchhhhhhhcccccchhhc
Confidence 777765 56666 4566778888888888765 2211 222334333333333322 111
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
++... ..+.+|..++++ |.+|..+|.....+++|+.+.++++
T Consensus 214 ~Ptsl----d~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 214 IPTSL----DDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CCCch----hhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcC
Confidence 22111 234455555543 4566666666666666666666654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=4.4e-05 Score=66.94 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=51.8
Q ss_pred ccccCccEEEEee-CCccccCC---HhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 19 HLFGRLRRLEVVR-DDVATGFP---VGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 19 ~~l~~L~~L~l~~-~~~~~~~p---~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
...++|+.|++.+ +......+ ......+++|+.|++ .|..+.+..- ......+++|+.|.+
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--------------~~l~~~c~~L~~L~l 276 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--------------SALASRCPNLETLSL 276 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH--------------HHHHhhCCCcceEcc
Confidence 3467888888876 33222222 122345678888888 7765333211 011112566777776
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCccc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAM 125 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L 125 (225)
.+|..+++.........+++|++|++..|..+
T Consensus 277 ~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 277 SNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 66766555443444556666777777766654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00096 Score=50.98 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=31.0
Q ss_pred cCccEEEEeeCCccccCCHhHHH-hccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLE-VLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.+++.|++.++.... +. . ++ .+.+|+.|+++...+..+.. ...+++|+.|++.+- .++
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~-L~~~l~~L~~L~Ls~N~I~~l~~-----------------l~~L~~L~~L~L~~N-~I~ 77 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-N-LGATLDKLEVLDLSNNQITKLEG-----------------LPGLPRLKTLDLSNN-RIS 77 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT---------------------TT--EEE--SS----
T ss_pred ccccccccccccccc-cc-c-hhhhhcCCCEEECCCCCCccccC-----------------ccChhhhhhcccCCC-CCC
Confidence 367888888754322 21 1 33 47788888884444554422 123778888888765 455
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
++. ......+|+|++|++.+-. +.++-.- .....+|+|+.|++.+.|-
T Consensus 78 ~i~-~~l~~~lp~L~~L~L~~N~-I~~l~~l-------------~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 78 SIS-EGLDKNLPNLQELYLSNNK-ISDLNEL-------------EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S-C-HHHHHH-TT--EEE-TTS----SCCCC-------------GGGGG-TT--EEE-TT-GG
T ss_pred ccc-cchHHhCCcCCEEECcCCc-CCChHHh-------------HHHHcCCCcceeeccCCcc
Confidence 552 1222468888888887543 3332110 2344677788888777653
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.04 E-value=1.8e-05 Score=59.83 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=87.8
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+.||+.|.+.+.. +..+|.. ++.++.|+.|.++...+..++. .+.+||-|+.|++.+- +|
T Consensus 54 ~l~nlevln~~nnq-ie~lp~~-issl~klr~lnvgmnrl~~lpr----------------gfgs~p~levldltyn-nl 114 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQ-IEELPTS-ISSLPKLRILNVGMNRLNILPR----------------GFGSFPALEVLDLTYN-NL 114 (264)
T ss_pred Hhhhhhhhhcccch-hhhcChh-hhhchhhhheecchhhhhcCcc----------------ccCCCchhhhhhcccc-cc
Confidence 47788888888654 4567765 6789999999987666654443 3456888888888766 34
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
..-..|.....+..|+.|++.+-. .+-+| ..+..+.+|+.|.+++-.-+ +++... ..+.
T Consensus 115 ~e~~lpgnff~m~tlralyl~dnd-fe~lp---------------~dvg~lt~lqil~lrdndll-~lpkei----g~lt 173 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDND-FEILP---------------PDVGKLTNLQILSLRDNDLL-SLPKEI----GDLT 173 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCC-cccCC---------------hhhhhhcceeEEeeccCchh-hCcHHH----HHHH
Confidence 332234555566777777777654 33333 34456677777777665433 244322 3466
Q ss_pred CccEEEEeCCCCCceecCC
Q 046905 180 SLEDLIVTGCCNMKIFTSG 198 (225)
Q Consensus 180 ~L~~L~I~~C~~L~~lp~~ 198 (225)
.|+.|.|.+ ..|+.+|..
T Consensus 174 ~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred HHHHHhccc-ceeeecChh
Confidence 777788777 366667644
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00022 Score=65.67 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=67.1
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...||+|++|.|.+-.--..-+ .....+||||..|+|+++. +..+ .+...+.+|+.|.++++
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~Tn-I~nl----------------~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTN-ISNL----------------SGISRLKNLQVLSMRNL 205 (699)
T ss_pred hhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCC-ccCc----------------HHHhccccHHHHhccCC
Confidence 4457888888877653322221 2334578888888888775 4333 24556777777777776
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCcee------cCCCCCCCCeeEEEecCC
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF------TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l------p~~~~~~~~L~~l~i~~~ 213 (225)
+--...... -.+.+..|+.|+|+.=.+...- -+...-+|.|+.|+++..
T Consensus 206 e~e~~~~l~---~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 206 EFESYQDLI---DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred CCCchhhHH---HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 543321111 1246889999999875554321 122345889999998843
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0022 Score=57.17 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=41.1
Q ss_pred cccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCC
Q 046905 6 KDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEG 67 (225)
Q Consensus 6 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~ 67 (225)
.+++.+--..++...++.-+.|+++++. ++.+....+.++++|++++++-..++.+|..++
T Consensus 62 ~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~ 122 (873)
T KOG4194|consen 62 RELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGH 122 (873)
T ss_pred cccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhhcccccc
Confidence 3445443334444445567889999644 555666667899999999996677888876543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00018 Score=63.10 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=19.7
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSA 124 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~ 124 (225)
+++|+.|++.+|..+.+......+..+++|++|.+.+|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 3555555555555444443222233355555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=50.64 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=35.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+.+|+.|+++++.. ..+.. +..+++|+.|+++...+.++... ....+|+|+.|.+.+. ++
T Consensus 40 ~l~~L~~L~Ls~N~I-~~l~~--l~~L~~L~~L~L~~N~I~~i~~~---------------l~~~lp~L~~L~L~~N-~I 100 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQI-TKLEG--LPGLPRLKTLDLSNNRISSISEG---------------LDKNLPNLQELYLSNN-KI 100 (175)
T ss_dssp T-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHH---------------HHHH-TT--EEE-TTS---
T ss_pred hhcCCCEEECCCCCC-ccccC--ccChhhhhhcccCCCCCCccccc---------------hHHhCCcCCEEECcCC-cC
Confidence 477999999997653 33433 56789999999966777666320 0124899999999865 45
Q ss_pred cccCCchHHhhcccCCEEEEecCc
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.++.....+..+|+|+.|++.+.+
T Consensus 101 ~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 101 SDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CChHHhHHHHcCCCcceeeccCCc
Confidence 555433455689999999998876
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=6e-05 Score=63.97 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
..|+.|.+++|....+-..-......|+.++|.|.+|.++...... .-....++|++|.+..|++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~-------------sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL-------------SLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH-------------HHHHhcchhhhhhhcccchhH
Confidence 3578888888877665433344567788888888888765432110 122356777777777777776
Q ss_pred eeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
...... ....+|+|++|+++.|++++.
T Consensus 205 ~~~Lk~--la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 205 DVSLKY--LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHHHH--HHHhhhhHHHhhhccCchhhc
Confidence 654332 223477777777777777664
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0051 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.8
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
++|++|+++++ .++.+ +..+..|++|+.|+++++. +.++
T Consensus 1 ~~L~~L~l~~N-~i~~l--~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL--PPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSH--GGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCccc--CchHhCCCCCCEEEecCCC-CCCC
Confidence 47888888888 67766 3446788999999998885 5544
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0009 Score=51.75 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 43 LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 43 ~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
+..++.++.|.+ +|..+.+..-. -....+++|+.|+|++|+.+++-. ...+..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~--------------~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLE--------------RLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHH--------------HhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcC
Confidence 345666666667 77666554221 011136777777777777777653 23455677777777776
Q ss_pred Cccc
Q 046905 122 CSAM 125 (225)
Q Consensus 122 C~~L 125 (225)
.+..
T Consensus 186 l~~v 189 (221)
T KOG3864|consen 186 LPYV 189 (221)
T ss_pred chhh
Confidence 6543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.00064 Score=63.11 Aligned_cols=108 Identities=25% Similarity=0.408 Sum_probs=55.4
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
|.+||.|+++.+. +..||...+.++..|++|.++...++.++. ....++.|+.|.-.+- .+.
T Consensus 382 ~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~----------------tva~~~~L~tL~ahsN-~l~ 443 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPD----------------TVANLGRLHTLRAHSN-QLL 443 (1081)
T ss_pred ccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhH----------------HHHhhhhhHHHhhcCC-cee
Confidence 4455555555432 344555545555555555554444544432 2223555555544322 233
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
.+ | ....++.|+.++++ |.+|.++... .....|+|++|++.+-+.+
T Consensus 444 ~f--P-e~~~l~qL~~lDlS-~N~L~~~~l~--------------~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 444 SF--P-ELAQLPQLKVLDLS-CNNLSEVTLP--------------EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ec--h-hhhhcCcceEEecc-cchhhhhhhh--------------hhCCCcccceeeccCCccc
Confidence 22 2 45567777777774 4556554311 1112267888888777764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=53.18 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=55.9
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccc-eEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYK-EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~-~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
.++.|++.++.....+|.. +..+++|+.|++ ++ .+. .++ .....+++|+.|+++++. +.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP----------------~~~~~l~~L~~LdLs~N~-ls 479 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIP----------------PSLGSITSLEVLDLSYNS-FN 479 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCC----------------hHHhCCCCCCEEECCCCC-CC
Confidence 3677888876655566665 678999999999 54 332 222 223457889999998884 44
Q ss_pred ccCCchHHhhcccCCEEEEecCc
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
... +.....+++|+.|+++++.
T Consensus 480 g~i-P~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 480 GSI-PESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCC-chHHhcCCCCCEEECcCCc
Confidence 322 4567788999999998876
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0012 Score=51.05 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=40.2
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
.++.++.|.+.+|..+.++......+-.++|+.|+|++|+.+.+-. . .....|++|+.|.|.++|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G----L----------~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG----L----------ACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH----H----------HHHHHhhhhHHHHhcCchh
Confidence 3566677777777766665333333345777777777777643310 0 2334566777777777665
Q ss_pred cce
Q 046905 164 LTS 166 (225)
Q Consensus 164 L~~ 166 (225)
...
T Consensus 189 v~~ 191 (221)
T KOG3864|consen 189 VAN 191 (221)
T ss_pred hhc
Confidence 543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.025 Score=51.94 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
..+++|+.|+++++. +.... +.....+++|+.|+++++.
T Consensus 439 ~~L~~L~~L~Ls~N~-l~g~i-P~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 439 SKLRHLQSINLSGNS-IRGNI-PPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred hCCCCCCEEECCCCc-ccCcC-ChHHhCCCCCCEEECCCCC
Confidence 345666777776663 33222 3345566667777766664
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.00028 Score=59.91 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=29.3
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
.++++..|++++- ++++++.+. .-+.+|++|++++ ..+..+|...+++ .|+.+.+++
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ccccceeeecccc-ccccCchHH----HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcC
Confidence 3444555555442 445555432 3355666666665 3556666555554 555555443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.004 Score=58.07 Aligned_cols=133 Identities=23% Similarity=0.303 Sum_probs=91.8
Q ss_pred ccccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..++.|+.|.+.++... ..+|. +.++++||+|++.-..+.+++.. ....+..|+.|.+++-
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyNrL~~fpas---------------~~~kle~LeeL~LSGN- 417 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYNRLNSFPAS---------------KLRKLEELEELNLSGN- 417 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhh--hccccceeeeeecccccccCCHH---------------HHhchHHhHHHhcccc-
Confidence 45677888888874432 44555 78899999999966667766542 2345778899999987
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+|+.+ +.....++.|++|...+- .+..+| ....+|.|+.++++ |.+|+.+.... ..+
T Consensus 418 kL~~L--p~tva~~~~L~tL~ahsN-~l~~fP----------------e~~~l~qL~~lDlS-~N~L~~~~l~~---~~p 474 (1081)
T KOG0618|consen 418 KLTTL--PDTVANLGRLHTLRAHSN-QLLSFP----------------ELAQLPQLKVLDLS-CNNLSEVTLPE---ALP 474 (1081)
T ss_pred hhhhh--hHHHHhhhhhHHHhhcCC-ceeech----------------hhhhcCcceEEecc-cchhhhhhhhh---hCC
Confidence 68877 566778888888776443 233333 44567888888874 55666655432 234
Q ss_pred CCCccEEEEeCCCCC
Q 046905 178 FPSLEDLIVTGCCNM 192 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L 192 (225)
.|.|++|++.|-..+
T Consensus 475 ~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRL 489 (1081)
T ss_pred CcccceeeccCCccc
Confidence 589999999987653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.015 Score=26.37 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=9.9
Q ss_pred CCccEEEEeCCCCCceec
Q 046905 179 PSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp 196 (225)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888886 77665
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0015 Score=53.14 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=49.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
+.+.+.|+.+||..-+ + .....|+.|++|.++-.++.++-.. ..+.+|+.|.++.- .+.
T Consensus 18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~pl-----------------~rCtrLkElYLRkN-~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLAPL-----------------QRCTRLKELYLRKN-CIE 76 (388)
T ss_pred HHHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccchhH-----------------HHHHHHHHHHHHhc-ccc
Confidence 6788899999877433 2 3367899999999866666655332 23666777666532 123
Q ss_pred ccCCchHHhhcccCCEEEEecC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C 122 (225)
++.-..-+..+|+|+.|++..-
T Consensus 77 sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 77 SLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cHHHHHHHhcCchhhhHhhccC
Confidence 3211123456677777777643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.022 Score=32.97 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=18.2
Q ss_pred ccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec
Q 046905 152 KLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp 196 (225)
+|++|.+.+. +++.++.. ...+++|+.|+++++ +++.++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~----l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE----LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH----GTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCC-CCcccCch----HhCCCCCCEEEecCC-CCCCCc
Confidence 4556665554 33333321 123666666666665 344443
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.04 Score=26.69 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=14.8
Q ss_pred CccEEEEeCCCCCceecCCC
Q 046905 180 SLEDLIVTGCCNMKIFTSGD 199 (225)
Q Consensus 180 ~L~~L~I~~C~~L~~lp~~~ 199 (225)
+|++|++++| +++.+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4788888888 888888654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.06 Score=46.30 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=61.9
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccc-cCC---CCCcccc----cccccccccccc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASC-DQG---DSDVAGA----NLEEEILFSKLR 154 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~-~~~---~~~~~~~----~~~~~~~~p~L~ 154 (225)
..+++|+.|++.++ .+..+ +......++|+.|++++.. +..++... ... ...++.- .......+.++.
T Consensus 160 ~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~ 235 (394)
T COG4886 160 RNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235 (394)
T ss_pred hccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhccccc
Confidence 34778888888877 34444 2222367778888887764 55554321 000 0000000 001122233333
Q ss_pred eeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 155 ~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
.+. +.+-+...... ....+++++.|.+.++ ++..++. ...+.+++.++++..
T Consensus 236 ~l~---l~~n~~~~~~~--~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 236 GLE---LSNNKLEDLPE--SIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc---cCCceeeeccc--hhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence 333 22222111000 1234677999998876 6677765 567788888888754
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.098 Score=44.98 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=49.0
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC---CCCccc--cc--cccccccccccee
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG---DSDVAG--AN--LEEEILFSKLRYM 156 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~---~~~~~~--~~--~~~~~~~p~L~~L 156 (225)
..++|+.|++++. ++..+ +.......+|++|.+.+-..++.+....... ...... .. ......++.|+.|
T Consensus 184 ~~~~L~~L~ls~N-~i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhheeccCC-ccccC--chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 4667777777776 44444 2222233447777776653222111100000 000000 00 1233455667777
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp 196 (225)
.+.+.. +.++.. ...+.+++.|++.+-......|
T Consensus 261 ~~s~n~-i~~i~~-----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 261 DLSNNQ-ISSISS-----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccc-cccccc-----ccccCccCEEeccCccccccch
Confidence 765542 222222 1357889999988754444344
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.054 Score=44.75 Aligned_cols=64 Identities=30% Similarity=0.337 Sum_probs=36.7
Q ss_pred HHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 43 LEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 43 ~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+.+||.|+.|+++|..+........ ....+|+.|.+-+-. |.--...+....+|.+++|+++.-
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---------------~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---------------LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---------------ccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccc
Confidence 4688999999998887765543210 124577777776542 110001223345677777777654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.068 Score=43.02 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=7.0
Q ss_pred ccCCcEEEEecc
Q 046905 46 LHSLETLHLSCT 57 (225)
Q Consensus 46 l~~L~~L~l~c~ 57 (225)
|++||+|.++|.
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 556666666444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.082 Score=45.46 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=20.8
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEI 62 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~ 62 (225)
.|++|..|++++. .+..+|.+ .+.+..|+.|+++-.++..+
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEE-MGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred hhhcceeeecccc-hhhhcchh-hhhhhhhheecccccccccc
Confidence 3556666666642 24445555 34555566666633333333
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.057 Score=44.73 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=20.6
Q ss_pred cccccccceeecCcC--CCcceeecCCCccceeCCCccEEEEeCCC
Q 046905 147 EILFSKLRYMTMLDL--ENLTSFCSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~--~~L~~~~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
...+-+|..|++++. .++..+. ....+|.|+++.+.+-|
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~-----~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVN-----HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccchhhHHHhc-----ccccccHHHHHhhcCCC
Confidence 334445566655442 2232222 11347888888887765
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.15 Score=25.73 Aligned_cols=16 Identities=38% Similarity=0.881 Sum_probs=12.9
Q ss_pred CCCccEEEEeCCCCCc
Q 046905 178 FPSLEDLIVTGCCNMK 193 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~ 193 (225)
+|.|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888876
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.21 Score=41.51 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=14.6
Q ss_pred cccccccccceeecCcCC
Q 046905 145 EEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 145 ~~~~~~p~L~~L~l~~~~ 162 (225)
..+..+|+|+.+.+.+.|
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 456789999999988876
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.73 E-value=0.88 Score=36.78 Aligned_cols=90 Identities=26% Similarity=0.289 Sum_probs=56.9
Q ss_pred ccCccEEEEeeC--CccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 21 FGRLRRLEVVRD--DVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 21 l~~L~~L~l~~~--~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
+++||.|.++.. .....++. +...+|+|++|.++-..+..+-.. .....++||..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl--------------~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTL--------------RPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccccccc--------------chhhhhcchhhhhcccCCc
Confidence 779999999874 32233333 245679999999844444432111 1223478899999999965
Q ss_pred ccccCC--chHHhhcccCCEEEEecCcccc
Q 046905 99 LMNLVP--SSVAKSLERLVTLRVSGCSAMT 126 (225)
Q Consensus 99 L~~l~~--~~~~~~l~~L~~L~I~~C~~L~ 126 (225)
.. +-- ......+|+|+.|+-.++..-+
T Consensus 129 ~~-l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 129 TN-LDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred cc-cccHHHHHHHHhhhhccccccccCCcc
Confidence 44 211 1234568999998888877543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.94 E-value=1.1 Score=37.34 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=22.6
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
-++.|+...|.-......-....-|||+..+.+..|+ ++..
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence 4555555555433211111223458899998888887 5543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 225 | |||
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 1e-05 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 2e-04 |
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 20/156 (12%)
Query: 42 LLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101
L + SLE L+ T + +I + LE+ + +L + V + L
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCR---------SLVSVKVGDFEILEL 235
Query: 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVAS-------CDQGDSDVAGANLEEEILFSKLR 154
+ A +LE ++ M + + C G S + + LF
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAA 293
Query: 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCC 190
+ LDL K P+LE L
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 45/200 (22%)
Query: 13 QGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESH 72
Q R++ +++ + G+L L+ L L G S
Sbjct: 84 QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-----------GLRLSD 132
Query: 73 VGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV---- 128
V+ LA NL L + C ++ S RL L +S C T+
Sbjct: 133 PIVNTLA----KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188
Query: 129 -------------VASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175
++ + L L + + LDL S + +
Sbjct: 189 AVAHVSETITQLNLSGYRKNLQKSD---LST--LVRRCPNLVHLDL----SDSVMLKNDC 239
Query: 176 F----KFPSLEDLIVTGCCN 191
F + L+ L ++ C +
Sbjct: 240 FQEFFQLNYLQHLSLSRCYD 259
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.53 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.34 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.27 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.26 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.26 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.25 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.23 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.2 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.2 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.19 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.18 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.18 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.16 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.15 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.14 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.14 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.12 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.12 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.12 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.12 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.09 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.08 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.08 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.08 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.06 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.04 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.04 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.02 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.01 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.01 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.01 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.01 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.0 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.99 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.99 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 98.99 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 98.98 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.98 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 98.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 98.96 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 98.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 98.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.95 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.94 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 98.94 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.94 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 98.93 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.93 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.93 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 98.92 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 98.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.91 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.9 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 98.88 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.88 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.88 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.86 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 98.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.85 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.84 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 98.83 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 98.83 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.82 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 98.82 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.81 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 98.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.8 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.8 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.78 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.76 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.76 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.74 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 98.74 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 98.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.72 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 98.72 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 98.71 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.7 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 98.7 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.68 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.66 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.66 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.66 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.64 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.63 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.57 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 98.57 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.55 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 98.54 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.53 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.52 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.51 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.5 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.45 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.43 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.4 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.38 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.38 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.36 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.33 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.32 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.32 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.31 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.29 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.29 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.28 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.26 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.24 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.22 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.16 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.97 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 97.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.93 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 97.92 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 97.9 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 97.84 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.84 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.84 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.73 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.72 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.66 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.57 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.46 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.38 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.17 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 96.54 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.43 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.42 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 94.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 93.29 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 90.42 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 89.3 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 86.25 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=114.89 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=72.8
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CC---CCccc-----ccccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SDVAG-----ANLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~~~~-----~~~~~~~~~p~L~~ 155 (225)
+++|+.|++.++ .++.+ +.....+++|++|++.+|. +..++..-.. .. .+.++ ..+.....+++|++
T Consensus 182 l~~L~~L~L~~n-~l~~l--p~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSL--PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp STTCCEEEEEEE-CCCCC--CGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCCEEECcCC-CcCcc--hHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 555666666655 34433 2334555666666666554 3333221000 00 00000 01123456788888
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
|.+.+|..+..++... ..+++|++|++++|+.+..+|..+..+++|+.+.+..
T Consensus 258 L~L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDI----HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCTTG----GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EECCCCCchhhcchhh----hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8888888877776532 5688999999999988888888888888888888864
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=106.80 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=90.1
Q ss_pred ccccccccceEeccCccCccccCCchHH---------hhcccCCEEEEecCcccccccccccCC-C---CCccc----cc
Q 046905 81 IKISFGNLTHLVVFSCKKLMNLVPSSVA---------KSLERLVTLRVSGCSAMTQVVASCDQG-D---SDVAG----AN 143 (225)
Q Consensus 81 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~---------~~l~~L~~L~I~~C~~L~~l~~~~~~~-~---~~~~~----~~ 143 (225)
....+++|+.|++++|..+..+. ... ..+++|++|++.++. +..++..-... . .+.++ ..
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p--~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCC--SCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred HHhcCcCCCEEECCCCCCccccC--hhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcC
Confidence 45568899999999998777652 222 248999999999985 55554321110 0 01110 01
Q ss_pred ccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 144 LEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 144 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
+.....+++|++|.+.++.....++... ..+++|++|++.+|..+..+|..+..+++|+.+++.++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIF----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCT----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHh----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 1235567889999999988877766532 46899999999999999999988889999999999864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=99.95 Aligned_cols=42 Identities=7% Similarity=0.148 Sum_probs=21.7
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEe
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIF 63 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~ 63 (225)
..+|+.|+++++.. ..+|...+..+++|++|++ ++..++.++
T Consensus 30 ~~~l~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~~l~~i~ 72 (239)
T 2xwt_C 30 PPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLE 72 (239)
T ss_dssp CTTCCEEEEESCCC-SEECTTTTTTCTTCCEEEEECCSSCCEEC
T ss_pred CCcccEEEEeCCcc-eEECHHHccCCCCCcEEeCCCCCCcceeC
Confidence 33566666665432 3333333455666666666 444455443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=97.08 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=103.4
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---ccccc-cccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLAL-IKISFG 86 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~-~~~~l~ 86 (225)
+|....++++.|+++++.. ..++...+..+++|++|+++-..+..++... .... ..+.. ..+++ ....++
T Consensus 31 ip~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 31 IPSNIPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp CCSCCCTTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred cCCCCCCCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 4444556888888887553 4445444567888888888333455443311 0000 00110 01111 123456
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcce
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTS 166 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 166 (225)
+|++|++.++ .++.+. +.....+++|+.|+++++. +..++. .....+++|++|.+.++ .++.
T Consensus 110 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~ 171 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPK--------------GVFDKLTSLKELRLYNN-QLKR 171 (270)
T ss_dssp SCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCH--------------hHccCCcccceeEecCC-cCcE
Confidence 6777777665 344332 2234566777777776663 443321 12345788999998876 3444
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 172 ~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGA---FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhH---hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 44321 235789999999998 77778764 46789999999986543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=95.07 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=122.8
Q ss_pred cccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccccc
Q 046905 6 KDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 6 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
++++.+-.+.+. .+++|+.|+++++..+..++...+..+++|++|++ +|..+..++.. .+..
T Consensus 41 n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~---------------~f~~ 103 (239)
T 2xwt_C 41 THLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD---------------ALKE 103 (239)
T ss_dssp CCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT---------------SEEC
T ss_pred CcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH---------------HhCC
Confidence 334444333332 37899999999876455566544678999999999 78888877542 2334
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCC---EEEEecCcccccccccccCCCCCcccccccccccccccc-eeecCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLV---TLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR-YMTMLD 160 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~---~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~ 160 (225)
+++|+.|++.++. ++.+ +. ...+++|+ .|++.+++++..++.. ....+++|+ .|.+.+
T Consensus 104 l~~L~~L~l~~n~-l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~--------------~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVN--------------AFQGLCNETLTLKLYN 165 (239)
T ss_dssp CTTCCEEEEEEEC-CCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------TTTTTBSSEEEEECCS
T ss_pred CCCCCEEeCCCCC-Cccc--cc-cccccccccccEEECCCCcchhhcCcc--------------cccchhcceeEEEcCC
Confidence 7899999999984 6655 22 56778888 9999999667776521 234578899 999977
Q ss_pred CCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCC-CCeeEEEecCCce
Q 046905 161 LENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLIT-PKRVDAWYSESAC 215 (225)
Q Consensus 161 ~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~-~~L~~l~i~~~~~ 215 (225)
. +++.+.... +..++|++|++.+++.++.+|.. +..+ ++|+.+++.++..
T Consensus 166 n-~l~~i~~~~----~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 166 N-GFTSVQGYA----FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp C-CCCEECTTT----TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred C-CCcccCHhh----cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 6 456666543 33478999999999889988754 4677 8999999987654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=94.15 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
....+++|+.|+++++.. ..+|. +..+++|++|++ +| .+..+. ....+++|++|++.+
T Consensus 39 ~~~~l~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~l~~n-~~~~~~-----------------~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINV-TDLTG--IEYAHNIKDLTINNI-HATNYN-----------------PISGLSNLERLRIMG 97 (197)
T ss_dssp BHHHHHTCCEEEEESSCC-SCCTT--GGGCTTCSEEEEESC-CCSCCG-----------------GGTTCTTCCEEEEEC
T ss_pred ChhhcCCccEEeccCCCc-cChHH--HhcCCCCCEEEccCC-CCCcch-----------------hhhcCCCCCEEEeEC
Confidence 335688999999998653 35563 678999999999 76 454432 233488999999999
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .+.... +.....+++|+.|++.+|. +..... .....+++|++|.+.++..++.+.. .
T Consensus 98 n-~l~~~~-~~~l~~l~~L~~L~Ls~n~-i~~~~~--------------~~l~~l~~L~~L~L~~n~~i~~~~~-----l 155 (197)
T 4ezg_A 98 K-DVTSDK-IPNLSGLTSLTLLDISHSA-HDDSIL--------------TKINTLPKVNSIDLSYNGAITDIMP-----L 155 (197)
T ss_dssp T-TCBGGG-SCCCTTCTTCCEEECCSSB-CBGGGH--------------HHHTTCSSCCEEECCSCTBCCCCGG-----G
T ss_pred C-ccCccc-ChhhcCCCCCCEEEecCCc-cCcHhH--------------HHHhhCCCCCEEEccCCCCccccHh-----h
Confidence 8 455422 2345678999999999986 332110 2345689999999999987776652 2
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|++|++.+| +++.++ .+..+++|+.+++.++.
T Consensus 156 ~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 KTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 46899999999998 567666 56788999999997654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-11 Score=96.30 Aligned_cols=191 Identities=11% Similarity=0.068 Sum_probs=85.7
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc----cc-ccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS----KL-ALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~----~l-~~~~~~l 85 (225)
+|.+..++|++|+++++.. ..++...+..+++|++|+++...+..+.... +... -.+... .+ +.....+
T Consensus 26 ip~~~~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 26 VPVGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CCTTCCTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCcCCCCCceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4445566777777776543 3344333566777777777222444442210 0000 001000 01 1122334
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCcc-----cccccccccccccce
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVA-----GANLEEEILFSKLRY 155 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~-----~~~~~~~~~~p~L~~ 155 (225)
++|++|++.++. +..+. +.....+++|++|++.++. +..++...... . .+.+ .........+++|++
T Consensus 105 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 105 GRLHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 556666665552 33221 2233445556666665553 33322110000 0 0000 000011233455666
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++. ++.+... ....+++|++|++.++ +++.+|.. +..+++|+++++.++.+
T Consensus 182 L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 182 LLLHQNR-VAHVHPH---AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCc-ccccCHh---HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 6665553 3333211 1234677777777776 45555432 35667777777775543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=102.38 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=115.1
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~~--- 76 (225)
++++..+-...|. .+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+... ..+...
T Consensus 73 ~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 73 ENQIQIIKVNSFK--HLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SCCCCEECTTTTS--SCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CCcCCeeCHHHhh--CCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 4445544444443 378899999987653 444544467889999999933356555431 11111 011111
Q ss_pred cccc-ccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cc-----cccccccc
Q 046905 77 KLAL-IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DV-----AGANLEEE 147 (225)
Q Consensus 77 ~l~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~-----~~~~~~~~ 147 (225)
.+++ .+..+++|+.|++.+|..+..+. ......+++|+.|++.+|. +..++........ +. .+......
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhh
Confidence 1111 24456788888888877777653 2345667888888888774 5554321110000 00 01111233
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++ .++.+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 228 ~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 228 QGLMHLQKLWMIQS-QIQVIERNA---FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTS---STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCccCCEEECCCC-ceeEEChhh---hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 45566777777665 344443321 235789999999997 67777754 36789999999985543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-12 Score=106.53 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=86.5
Q ss_pred cccCccEEEEeeCCcccc-CCHhHHHhccCCcEEEE-eccccce-Eecc-CCc---cccccccc------cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATG-FPVGLLEVLHSLETLHL-SCTSYKE-IFSN-EGC---LESHVGVS------KLALIKISFG 86 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~l-~c~~l~~-~~~~-~~~---~~~~l~~~------~l~~~~~~l~ 86 (225)
.+++|+.|+++++..... ++. .+..+++|++|++ +|. +.. .+.. ... ..-.+... .++.....++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 467888888887653322 332 3567888888888 663 321 1100 000 00000000 0111122344
Q ss_pred ccceEeccCccCccccCCchHHhhcc-cCCEEEEecCc-ccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLE-RLVTLRVSGCS-AMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~I~~C~-~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+|++|++.+|..+.....+.....++ +|++|++.+|. .+..-. -......+|+|++|.+.+|..+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-------------l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-------------LSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-------------HHHHHHHCTTCSEEECTTCTTC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH-------------HHHHHhhCCCCCEEeCCCCCcC
Confidence 44444444443333321122333444 44444444443 111000 0012335788888888888765
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
+..... ....+++|++|++.+|..+..- ...+..+++|+.+++.++
T Consensus 236 ~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHH---HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 432211 1245788999999998744311 012356788999988754
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=100.64 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=109.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc-ccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL-IKISF 85 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~-~~~~l 85 (225)
.+|.+..++++.|+++++.. ..++...+..+++|++|+++-..+..+... .+... ..+.. ..+++ .+..+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred cCCCCCCCCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 46777778999999998664 444444467899999999933346655431 11111 01111 11222 24456
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC--C---Cccc--c-cccccccccccceee
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD--S---DVAG--A-NLEEEILFSKLRYMT 157 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~--~---~~~~--~-~~~~~~~~p~L~~L~ 157 (225)
++|+.|+++++. ++.+. +.....+++|++|++.+|..+..++......- . +.++ . .......+++|+.|.
T Consensus 136 ~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEE
T ss_pred ccCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEE
Confidence 788888888773 55442 33456788888888888777766543211100 0 0000 0 001223445666666
Q ss_pred cCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec-CCCCCCCCeeEEEecCCce
Q 046905 158 MLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT-SGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 158 l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp-~~~~~~~~L~~l~i~~~~~ 215 (225)
+.++ .++.+.... ...+++|++|++.++ +++.++ ..+..+++|+.|++.++..
T Consensus 214 Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 214 LSGN-HLSAIRPGS---FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CTTS-CCCEECTTT---TTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCC-ccCccChhh---hccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCC
Confidence 6655 344443221 235677888888776 455554 3446678888888876544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=101.28 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=102.5
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---ccccc-ccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLAL-IKISF 85 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~-~~~~l 85 (225)
.+|.+..++++.|+++++.... ++...+..+++|++|+++...+..+.... +... ..+.. ..+++ .+..+
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred ccCCCCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 3555556688888887755433 33333567788888888333455553211 1110 01111 11122 13346
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC--C---Cccc--c-cccccccccccceee
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD--S---DVAG--A-NLEEEILFSKLRYMT 157 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~--~---~~~~--~-~~~~~~~~p~L~~L~ 157 (225)
++|+.|+++++. ++.+. ......+++|+.|++.+|..+..++......- . +.+. . .......+++|+.|.
T Consensus 147 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEE
Confidence 777777777763 44442 23445677777777777776666543211100 0 0000 0 001233456666666
Q ss_pred cCcCCCcceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCCce
Q 046905 158 MLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 158 l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~~~ 215 (225)
+.++. ++.+... ....+++|++|++.++ +++.+ |..+..+++|+.|++.++..
T Consensus 225 Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 225 MSGNH-FPEIRPG---SFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CTTSC-CSEECGG---GGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCc-CcccCcc---cccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcC
Confidence 66653 3333221 1235788888888887 45555 44456788899999886644
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=96.76 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=83.2
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|++|+++++.. ..++...+..+++|++|+++...+..+... ....+++|++|+++
T Consensus 45 ~iP~~~~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 45 SIPSGLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEED---------------SFSSLGSLEHLDLS 108 (353)
T ss_dssp SCCTTCCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cccccccccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHh---------------hcCCCCCCCEEECC
Confidence 35556667899999987653 445544467899999999933356655431 12235666666666
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|++.++. +..++.. .....+++|++|.+.++..++.+....
T Consensus 109 ~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~-------------~~~~~l~~L~~L~l~~n~~~~~~~~~~--- 169 (353)
T 2z80_A 109 YN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGET-------------SLFSHLTKLQILRVGNMDTFTKIQRKD--- 169 (353)
T ss_dssp SS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSS-------------CSCTTCTTCCEEEEEESSSCCEECTTT---
T ss_pred CC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCch-------------hhhccCCCCcEEECCCCccccccCHHH---
Confidence 65 344331 2234556666666666653 3333210 012234555555555554444443221
Q ss_pred ceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEec
Q 046905 175 TFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYS 211 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~ 211 (225)
...+++|++|++.++. ++.+ |..+..+++|+++++.
T Consensus 170 ~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 170 FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEE
T ss_pred ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCC
Confidence 1234455555555542 2222 3333344444444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=100.65 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=122.2
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~--- 76 (225)
++++..+-.+.|. .+++|+.|+++++... .++...+..+++|++|+++...+..++... +... ..+...
T Consensus 84 ~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 84 ENNIQMIQADTFR--HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCcCceECHHHcC--CCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 4445544444443 4788899999876543 334334567889999988333455554321 1111 111111
Q ss_pred cccc-ccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cc-----cccccccc
Q 046905 77 KLAL-IKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DV-----AGANLEEE 147 (225)
Q Consensus 77 ~l~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~-----~~~~~~~~ 147 (225)
.+++ .+..+++|+.|++.+|..+..+. ......+++|+.|++.++. +..++........ +. .+..+...
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred eeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccc
Confidence 1222 34567899999999998888763 3345678899999998875 5554321111000 01 11112344
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++. ++.+.... ...+++|+.|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 239 ~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQ-VSLIERNA---FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCccCCCEEEeCCCc-CceECHHH---hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 567889999998863 44444322 245899999999998 78888765 36789999999986533
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-12 Score=103.26 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=95.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccce--Eec----cCCccccccccc-c-----cccccccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKE--IFS----NEGCLESHVGVS-K-----LALIKISF 85 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~--~~~----~~~~~~~~l~~~-~-----l~~~~~~l 85 (225)
..+++|++|+++++......+. .+..+++|++|++ +|..+.. ++. ........+... . ++.....+
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3477888888887653333333 2456888888888 7755542 111 001111111111 1 22234567
Q ss_pred c-ccceEeccCcc-CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 86 G-NLTHLVVFSCK-KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 86 ~-~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
+ +|++|++++|. .+..-..+.....+++|++|++.+|..+..... .....+++|++|.+.+|..
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--------------~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--------------QEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--------------GGGGGCTTCCEEECTTCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--------------HHHhCCCCCCEeeCCCCCC
Confidence 8 99999999997 455322245667899999999999975432211 2345679999999999985
Q ss_pred cceeecCCCccceeCCCccEEEEeCC
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
+...... ....+++|++|++.+|
T Consensus 260 ~~~~~~~---~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLL---ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGG---GGGGCTTCCEEECTTS
T ss_pred CCHHHHH---HHhcCCCCCEEeccCc
Confidence 4332111 1235899999999999
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=90.80 Aligned_cols=163 Identities=16% Similarity=0.122 Sum_probs=114.8
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++++.|+++++.... ++...+..+++|++|+++-..+..++. .....+++|+.|+++
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSA---------------GVFDDLTELGTLGLA 91 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT---------------TTTTTCTTCCEEECT
T ss_pred ccCCCCCCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCH---------------hHhccCCcCCEEECC
Confidence 4555566799999999866444 443346789999999993334554432 123458899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|++.++. +..++. .....+++|+.|.+.++ +++.+..+.
T Consensus 92 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~--- 150 (251)
T 3m19_A 92 NN-QLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPS--------------GVFDRLTKLKELRLNTN-QLQSIPAGA--- 150 (251)
T ss_dssp TS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT---
T ss_pred CC-cccccC-hhHhcccCCCCEEEcCCCc-CCCcCh--------------hHhccCCcccEEECcCC-cCCccCHHH---
Confidence 88 466553 3455688999999999884 655542 12346789999999887 566665432
Q ss_pred ceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|+++++ +++.+|. .+..+++|+.+++.++.+
T Consensus 151 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 151 FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 235799999999997 6777765 456789999999986544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=95.89 Aligned_cols=62 Identities=6% Similarity=0.015 Sum_probs=46.5
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCcee
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESACC 216 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~~ 216 (225)
.+++|++|.+.++ .++.+... ...+++|++|+++++ +++.+|.....+++|+.++++++.+.
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCC-cCCcchhh----hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 4678888888776 34444432 245789999999998 77888887778899999999876553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-10 Score=91.03 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=110.7
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc---cccc---ccccccccccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES---HVGV---SKLALIKISFGNL 88 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~---~l~~---~~l~~~~~~l~~L 88 (225)
.+|.+.+++++.|+++++... .++...+..+++|++|+++...+..++........ .+.. ..++.....+++|
T Consensus 24 ~ip~~~~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 102 (290)
T 1p9a_G 24 ALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102 (290)
T ss_dssp SCCSCCCTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTC
T ss_pred cCCCCCCCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCC
Confidence 356566679999999976543 34334467899999999944456666543221110 0111 1222333446667
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|+++++ .++.+. +.....+++|+.|++.++. +..++. .....+++|+.|.+.+. +++.+.
T Consensus 103 ~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~l~ 164 (290)
T 1p9a_G 103 TVLDVSFN-RLTSLP-LGALRGLGELQELYLKGNE-LKTLPP--------------GLLTPTPKLEKLSLANN-NLTELP 164 (290)
T ss_dssp CEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCT--------------TTTTTCTTCCEEECTTS-CCSCCC
T ss_pred CEEECCCC-cCcccC-HHHHcCCCCCCEEECCCCC-CCccCh--------------hhcccccCCCEEECCCC-cCCccC
Confidence 77777666 344432 2334566677777776663 444331 12235788999998876 456665
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
.+. ...+++|++|++.++ +++.+|.+....++|+.+.+.++.
T Consensus 165 ~~~---~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGL---LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHH---hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 432 235889999999987 688899888778899999998543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=90.00 Aligned_cols=126 Identities=7% Similarity=0.066 Sum_probs=65.8
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC--CCCCc-----cccccccccccccccee
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ--GDSDV-----AGANLEEEILFSKLRYM 156 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~--~~~~~-----~~~~~~~~~~~p~L~~L 156 (225)
.+++|+.|+++++.--..-..+.....+++|+.|++.++. +..++..... ...+. .+........+++|++|
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 4566666666665321110112334556667777766654 3333221100 00000 00111223455677777
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.++. ++.+... ....+++|++|++++| +++.+|..+..+++|+++++.++.+
T Consensus 222 ~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 222 GLSFNS-ISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECCSSC-CCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred ECCCCc-CceeChh---hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcC
Confidence 776653 3333322 1245778888888887 6677777777778888888875433
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=92.78 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=90.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---ccccc---ccc-ccccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGV---SKL-ALIKISFGNLT 89 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~---~~l-~~~~~~l~~L~ 89 (225)
.+++|++|+++++......|. .+..+++|++|++ ++..+..+.... .... ..+.. ... +.....+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 477888888887654333333 3567888888888 665455553211 1110 01111 111 12234567888
Q ss_pred eEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCc-----ccccccccccccccceeecC
Q 046905 90 HLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDV-----AGANLEEEILFSKLRYMTML 159 (225)
Q Consensus 90 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~-----~~~~~~~~~~~p~L~~L~l~ 159 (225)
+|++.++ .++.+. +.....+++|++|++.++. +..++...... . ... .+..+.....+++|+.|.+.
T Consensus 133 ~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 133 YLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp EEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCC-cccccC-HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 8888877 344442 2334567888888888774 55444321110 0 001 11112334567899999998
Q ss_pred cCCCcceeecCCCccceeCCCccEEEEeCCC
Q 046905 160 DLENLTSFCSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 160 ~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
++ .++.+... ....+++|++|++.+++
T Consensus 210 ~n-~l~~~~~~---~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 AN-NLSALPTE---ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SS-CCSCCCHH---HHTTCTTCCEEECCSSC
T ss_pred CC-cCCcCCHH---HcccCcccCEEeccCCC
Confidence 87 34444321 12358999999998875
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=90.03 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---ccccc-ccccccccceE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLAL-IKISFGNLTHL 91 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~-~~~~l~~L~~L 91 (225)
.+++|+.|.+.++. ...++. +..+++|++|++ ++ .+..+........ ..+.. ..+++ ....+++|++|
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~--l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQG--IQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTT--GGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCC-cccccc--cccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45666666666543 223332 455667777766 33 2333221111100 00000 01111 13346777777
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
++.+| .++.+. +.....+++|+.|++.+|. +..++. .....+++|+.|.+.++ +++.+....
T Consensus 115 ~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~~~~ 176 (272)
T 3rfs_A 115 VLVEN-QLQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLPK--------------GVFDKLTNLTELDLSYN-QLQSLPEGV 176 (272)
T ss_dssp ECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ECCCC-cCCccC-HHHhccCCCCCEEECCCCc-cCccCH--------------HHhccCccCCEEECCCC-CcCccCHHH
Confidence 77777 344442 2334567777777777773 444331 12346788999999887 355544321
Q ss_pred CccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++++| +++.+|.. +..+++|+.+++.++.+
T Consensus 177 ---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 177 ---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 235789999999998 56666654 46789999999986643
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=94.44 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=43.8
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++ +++.+.... ...+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 268 ~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 268 LHELLRLQEIQLVGG-QLAVVEPYA---FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CTTCTTCCEEECCSS-CCSEECTTT---BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccccccCCEEECCCC-ccceECHHH---hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 345677777777765 344443321 245789999999998 67777754 36778999999986544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-10 Score=89.83 Aligned_cols=168 Identities=18% Similarity=0.133 Sum_probs=91.4
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccc-cccccccceEe
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALI-KISFGNLTHLV 92 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~-~~~l~~L~~L~ 92 (225)
.+.+.+++++.. +..+|... .++|++|+++...+..++... .... ..+.. ..+++. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCC-CCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 467888887643 45566532 468999999434455554311 1000 00100 011111 12344555555
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
++++ .++.+. +.....+++|++|++.++. +..++ ......+++|++|.+.++ .++.+....
T Consensus 92 l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~- 152 (270)
T 2o6q_A 92 VTDN-KLQALP-IGVFDQLVNLAELRLDRNQ-LKSLP--------------PRVFDSLTKLTYLSLGYN-ELQSLPKGV- 152 (270)
T ss_dssp CCSS-CCCCCC-TTTTTTCSSCCEEECCSSC-CCCCC--------------TTTTTTCTTCCEEECCSS-CCCCCCTTT-
T ss_pred CCCC-cCCcCC-HhHcccccCCCEEECCCCc-cCeeC--------------HHHhCcCcCCCEEECCCC-cCCccCHhH-
Confidence 5544 233221 1223344555555555443 22221 122346788889888876 355554331
Q ss_pred ccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.++ +++.+|.. +..+++|+.+++.++..
T Consensus 153 --~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 153 --FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp --TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 245799999999998 66777654 56789999999986543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.5e-10 Score=95.94 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=101.2
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccc---
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVS--- 76 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~--- 76 (225)
++++..+-...|. .+++|++|+++++......|. .+..+++|++|+++-..+..++... +... ..+...
T Consensus 41 ~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 41 KNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCccceECHhHcc--CCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 3444444333333 377888888877654333333 3567788888888323344443211 1100 001110
Q ss_pred cc-ccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--CC---C-----ccccccc
Q 046905 77 KL-ALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--DS---D-----VAGANLE 145 (225)
Q Consensus 77 ~l-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~~---~-----~~~~~~~ 145 (225)
.+ +.....+++|+.|++.++ .+..+. +.....+++|++|++.+|. +..++...... .. . .......
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDN-DLVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCT-TCCEEC-TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred cCChhHccccccCCEEECCCC-ccceeC-hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 01 112334555666666555 233322 2233445566666665553 33322110000 00 0 0000112
Q ss_pred ccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 146 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|++|.+.+++.+..+.... ...++|++|++.+| +++.+|. .+..+++|+.|+++++..
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNC----LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTT----TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred hcccCcccceeeCCCCccccccCccc----ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcC
Confidence 33456778888888887777766543 34558888888887 5666663 345778899998886544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-10 Score=93.16 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc--ccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL--IKISFGNLT 89 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~--~~~~l~~L~ 89 (225)
.+++|+.|+++++.... ++...+..+++|++|+++...+..++.. ..... -.+.. ..++. ....+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 36677777777654333 3323345677777777733344443321 11100 00110 11111 233466777
Q ss_pred eEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC-----Cccc-----ccccccccccccceeecC
Q 046905 90 HLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS-----DVAG-----ANLEEEILFSKLRYMTML 159 (225)
Q Consensus 90 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~-----~~~~-----~~~~~~~~~p~L~~L~l~ 159 (225)
.|+++++..+..+. +.....+++|++|++.++. +..+.......-. +.+. ........+++|+.|.+.
T Consensus 153 ~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred EEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 77777665555442 2334556667777776664 3322111100000 0000 000011235666666665
Q ss_pred cCCCcceeecC-----------------C---C--------ccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEe
Q 046905 160 DLENLTSFCSG-----------------V---V--------DYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWY 210 (225)
Q Consensus 160 ~~~~L~~~~~~-----------------~---~--------~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i 210 (225)
++. ++.+... . . .....+++|++|+++++ +++.+|... ..+++|+++++
T Consensus 231 ~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 231 DTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp SCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 542 1111000 0 0 00124789999999998 788898875 68899999999
Q ss_pred cCCce
Q 046905 211 SESAC 215 (225)
Q Consensus 211 ~~~~~ 215 (225)
.++.+
T Consensus 309 ~~N~~ 313 (353)
T 2z80_A 309 HTNPW 313 (353)
T ss_dssp CSSCB
T ss_pred eCCCc
Confidence 86643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=97.64 Aligned_cols=122 Identities=7% Similarity=0.000 Sum_probs=68.0
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC---CCC---Cccc--c-cccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ---GDS---DVAG--A-NLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~---~~~---~~~~--~-~~~~~~~~p~L~~ 155 (225)
+++|+.|++.++ .+..+. +.....+++|+.|+++++. +..++..... ... +.++ . .......+++|+.
T Consensus 119 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSS-CCCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCE
T ss_pred cCCCCEEECCCC-CCCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCE
Confidence 556666666665 233332 2233456666666666654 3332211100 000 0000 0 0012224677777
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++ .++.++.. ...+++|+.|+++++ .+..+|..+..+++|+.+++.++.+
T Consensus 196 L~Ls~N-~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 196 LDLSSN-KLAFMGPE----FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECCSS-CCCEECGG----GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EECCCC-CCCCCCHh----HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 777765 34444432 245788999999886 6777888777888999999887654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=88.47 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEecc--CCccc---ccccc---ccccc-ccccccccce
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSN--EGCLE---SHVGV---SKLAL-IKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~--~~~~~---~~l~~---~~l~~-~~~~l~~L~~ 90 (225)
.+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+... ..+.. ..+.+ ....+++|+.
T Consensus 50 ~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 50 SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 478999999998654 344444467899999999933445555421 11110 00111 11111 2445677778
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccc----eeecCcCCCcce
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR----YMTMLDLENLTS 166 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~L~~ 166 (225)
|+++++ .++.+..+.....+++|++|+++++. +..++. .....+++|+ +|.+.+. .++.
T Consensus 129 L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~l~l~L~ls~n-~l~~ 191 (276)
T 2z62_A 129 LNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC--------------TDLRVLHQMPLLNLSLDLSLN-PMNF 191 (276)
T ss_dssp EECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG--------------GGGHHHHTCTTCCEEEECCSS-CCCE
T ss_pred EECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCH--------------HHhhhhhhccccceeeecCCC-cccc
Confidence 877776 34433224455677778888887774 444321 1223344555 5666554 3444
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCc
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESA 214 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~ 214 (225)
+.... ...++|++|+++++ +++.+|... ..+++|+.+++.++.
T Consensus 192 ~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 192 IQPGA----FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECTTS----SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCccc----cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 54432 34568999999998 488887653 678999999998543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=95.99 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=95.3
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|++|+++++......|. .+..+++|++|+++...+..++.. .+..+++|++|+++
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~---------------~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGD---------------AFYSLGSLEHLDLS 82 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTT---------------TTTTCTTCCEEECT
T ss_pred cccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChh---------------hccccccCCEEECC
Confidence 45666678999999998764443333 357899999999933356655431 23346778888887
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|+++++. +..+.. +.....+++|++|.+.++..+..+....
T Consensus 83 ~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-------------~~~~~~l~~L~~L~L~~n~~~~~~~~~~--- 143 (549)
T 2z81_A 83 DN-HLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGV-------------TSLFPNLTNLQTLRIGNVETFSEIRRID--- 143 (549)
T ss_dssp TS-CCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCS-------------SCSCTTCTTCCEEEEEESSSCCEECTTT---
T ss_pred CC-ccCccC-HHHhccCCCCcEEECCCCc-ccccch-------------hhhhhccCCccEEECCCCccccccCHhh---
Confidence 77 344442 3445677788888887774 332210 0123356667777777666555554321
Q ss_pred ceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
...+++|++|++.++.--...|..+..+++|+.+++.
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 1346667777776664333344444444555555443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8e-10 Score=101.50 Aligned_cols=113 Identities=9% Similarity=-0.074 Sum_probs=70.3
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...+++|+.|++.+|. +.... +.....+++|++|++.+|.-...++ .....+++|++|.+.++
T Consensus 438 l~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---------------~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNM-LEGEI-PQELMYVKTLETLILDFNDLTGEIP---------------SGLSNCTNLNWISLSNN 500 (768)
T ss_dssp GGGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSCCCSCCC---------------GGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEECCCCc-ccCcC-CHHHcCCCCceEEEecCCcccCcCC---------------HHHhcCCCCCEEEccCC
Confidence 3345666666666663 32221 3344566666666666664221221 23456778888888887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.--..++.. ...+++|++|++++|.-...+|..+..+++|+.+++.++.+
T Consensus 501 ~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 501 RLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCSCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ccCCcCChH----HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 644344432 24578888888888865557787777888888888876544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-10 Score=100.04 Aligned_cols=171 Identities=16% Similarity=0.088 Sum_probs=97.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccccc----cccccccccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGVSK----LALIKISFGN 87 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~~~----l~~~~~~l~~ 87 (225)
..+++|+.|+++++.. ..+|. .+..+++|++|++ ++. +..++....... .. +.... .+.....+++
T Consensus 373 ~~~~~L~~L~L~~n~l-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGA-IIMSA-NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HCCSCCCEEECCSCSE-EEECC-CCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccCCcccEeECCCCcc-ccchh-hccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 3577888888887653 33442 2466788888888 542 222211010000 00 00000 1122334566
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
|+.|++.+|. +.....+.....+++|++|++++|. +..++. .....+++|++|.+.++. ++.+
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~Ls~N~-l~~~ 512 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW--------------GVFDTLHRLQLLNMSHNN-LLFL 512 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT--------------TTTTTCTTCCEEECCSSC-CSCE
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccCh--------------hhhcccccCCEEECCCCc-CCCc
Confidence 6666666663 2221112334456666666666663 333221 234567899999999884 4444
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCC-CeeEEEecCC
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITP-KRVDAWYSES 213 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~-~L~~l~i~~~ 213 (225)
... ....+++|++|++++| +++.+|..+..++ +|+++++.++
T Consensus 513 ~~~---~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 513 DSS---HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EGG---GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred CHH---HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 221 1245889999999998 5888998877776 5999999854
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=89.85 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=36.3
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|++|.+.++. ++.++... +++|++|+++++ +++.+|. ...+++|+++++.++.+
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~~~------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPKGL------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCSSC------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred cCCCCEEECCCCc-cChhhhhc------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 4677777776653 34444322 267778887776 5666665 56677788887766543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=89.10 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=88.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---cccccccc--ccccccccccceEec
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLVV 93 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~i 93 (225)
..+++|+.|+++++.. ..++. +..+++|++|+++...+..++....... ..+....+ .+....+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 3466777777776542 33333 4567777777772223444332111100 00000000 122334566777777
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVD 173 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 173 (225)
++| .++.+ .....+++|+.|++++|. +..+ .....+++|++|.+.++ .++.+..
T Consensus 120 ~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~----------------~~l~~l~~L~~L~L~~N-~l~~~~~---- 173 (291)
T 1h6t_A 120 EHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI----------------TVLSRLTKLDTLSLEDN-QISDIVP---- 173 (291)
T ss_dssp TTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC----------------GGGGGCTTCSEEECCSS-CCCCCGG----
T ss_pred CCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc----------------hhhccCCCCCEEEccCC-ccccchh----
Confidence 666 34443 234566677777776664 3332 13345677888877766 3333322
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
...+++|++|+++++ +++.+|. +..+++|+.+++.++
T Consensus 174 -l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred -hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 134778888888877 5666654 566778888887644
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=88.54 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.7
Q ss_pred eeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
..+++|++|++.++ +++.+|..+..+++|+.+++.++.
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 35677888887776 566777766677777777777543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=89.09 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=38.9
Q ss_pred cccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 147 EILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 147 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++. ++.+.. ...+++|++|++++| +++.++. +..+++|+.+++.++.+
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDISP-----LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred hcCCCCCCEEECCCCc-cCcChh-----hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCee
Confidence 3455667777766652 232221 235788899998887 5666653 56788899888875433
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=86.78 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=96.6
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccce
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTH 90 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~ 90 (225)
|...|.++..+.+.+........ ...+++|++|++ ++ .+..+........ ..+....+ .+....+++|++
T Consensus 14 ~~~~~~~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 89 (272)
T 3rfs_A 14 PDDAFAETIKANLKKKSVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY 89 (272)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred CCchHHHHHHHHhcCcccccccc---cccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCE
Confidence 44456666666665543333322 467999999999 54 3444432211110 00110000 122334555666
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecC
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSG 170 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 170 (225)
|++++| .++.+. +.....+++|++|++.+|. +..++. .....+++|++|.+.++ +++.+...
T Consensus 90 L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~ 151 (272)
T 3rfs_A 90 LILTGN-QLQSLP-NGVFDKLTNLKELVLVENQ-LQSLPD--------------GVFDKLTNLTYLNLAHN-QLQSLPKG 151 (272)
T ss_dssp EECTTS-CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred EECCCC-ccCccC-hhHhcCCcCCCEEECCCCc-CCccCH--------------HHhccCCCCCEEECCCC-ccCccCHH
Confidence 666555 333331 2223455566666665553 332221 12346788999999887 56555543
Q ss_pred CCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 171 VVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 171 ~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
. ...+++|++|++.+| +++.+|.. +..+++|+.+++.++..
T Consensus 152 ~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 152 V---FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp T---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred H---hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC
Confidence 1 235889999999998 57777654 36789999999986544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=101.20 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred ccc--ccccCccEEEEeeCCccc-----------------cCCHhH-HHhccCCcEEEE-eccccceEeccCCccccccc
Q 046905 16 FPR--HLFGRLRRLEVVRDDVAT-----------------GFPVGL-LEVLHSLETLHL-SCTSYKEIFSNEGCLESHVG 74 (225)
Q Consensus 16 ~~~--~~l~~L~~L~l~~~~~~~-----------------~~p~~~-~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~ 74 (225)
+|. +.+++|+.|+++++.... .+|..+ +.++++|++|++ +|.-...++.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~---------- 509 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD---------- 509 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----------
Confidence 554 468899999999866444 266652 228999999999 7765544442
Q ss_pred ccccccccccccccceEeccCccCccc-cCCchHHhhcc-------cCCEEEEecCcccccccc--cccC-CCC---Ccc
Q 046905 75 VSKLALIKISFGNLTHLVVFSCKKLMN-LVPSSVAKSLE-------RLVTLRVSGCSAMTQVVA--SCDQ-GDS---DVA 140 (225)
Q Consensus 75 ~~~l~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~-------~L~~L~I~~C~~L~~l~~--~~~~-~~~---~~~ 140 (225)
....+++|+.|+++++..+.. .. |.....++ +|+.|++.++. +..++. .-.. ... ..+
T Consensus 510 ------~l~~L~~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 510 ------FLYDLPELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp ------GGGGCSSCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECT
T ss_pred ------HHhCCCCCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECC
Confidence 122345555555555533332 11 22222222 55555555543 333332 0000 000 000
Q ss_pred c--c-cccccccccccceeecCcCCCcceeecCCCccceeCCC-ccEEEEeCCCCCceecCCCCCC--CCeeEEEecCCc
Q 046905 141 G--A-NLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS-LEDLIVTGCCNMKIFTSGDLIT--PKRVDAWYSESA 214 (225)
Q Consensus 141 ~--~-~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~-L~~L~I~~C~~L~~lp~~~~~~--~~L~~l~i~~~~ 214 (225)
. . .-.....+++|+.|.+.++. ++.++.. ...+++ |++|+++++. ++.+|..+... ++|+.++++.+.
T Consensus 582 ~N~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~----l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 582 HNKVRHLEAFGTNVKLTDLKLDYNQ-IEEIPED----FCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp TSCCCBCCCCCTTSEESEEECCSSC-CSCCCTT----SCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCcccchhhcCCCcceEEECcCCc-cccchHH----HhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 0 0 00123456778888887764 3344432 246788 9999999985 77888765444 459999998665
Q ss_pred e
Q 046905 215 C 215 (225)
Q Consensus 215 ~ 215 (225)
.
T Consensus 656 l 656 (876)
T 4ecn_A 656 I 656 (876)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=91.16 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc-cc---ccc---ccccc-ccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE-SH---VGV---SKLAL-IKI 83 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~-~~---l~~---~~l~~-~~~ 83 (225)
.+|.+.++++++|+++++. +..+|...+.++++|++|++ ++.-.+.++... +... .. +.. ..+++ .+.
T Consensus 23 ~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 23 EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp SCCTTCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred ccCcCcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 3566666799999999754 56677665678999999999 665555554321 1111 00 000 12222 244
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC---C---Cccc--cc--cccccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD---S---DVAG--AN--LEEEILFSKL 153 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~---~---~~~~--~~--~~~~~~~p~L 153 (225)
.+++|++|++.++ +++.+. ........++..|.+.++.++..++....... . ..+. .. .......++|
T Consensus 102 ~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNT-GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEE-CCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hcccccccccccc-ccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 5778888888877 344442 22233456677788877777766653321110 0 0000 00 1112234678
Q ss_pred ceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 154 RYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 154 ~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
+.|.+.++..++.++.+. ...+++|++|+++++ +++.+|.. .+..|+.+++.
T Consensus 180 ~~l~l~~~n~l~~i~~~~---f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l 231 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDV---FHGASGPVILDISRT-RIHSLPSY--GLENLKKLRAR 231 (350)
T ss_dssp EEEECTTCTTCCCCCTTT---TTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECT
T ss_pred hHHhhccCCcccCCCHHH---hccCcccchhhcCCC-CcCccChh--hhccchHhhhc
Confidence 888888888888777542 245788888888887 68888764 24556666554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-09 Score=89.14 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=17.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
+++|++|+++++.. ..++...+..+++|++|++
T Consensus 68 l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L 100 (390)
T 3o6n_A 68 FRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYM 100 (390)
T ss_dssp CCCCSEEECTTSCC-CEECTTTTTTCTTCCEEEC
T ss_pred cccCcEEECCCCcc-cccChhhccCCCCcCEEEC
Confidence 55666666665442 2233222455666666666
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=98.58 Aligned_cols=174 Identities=10% Similarity=0.062 Sum_probs=103.2
Q ss_pred ccc--ccccCccEEEEeeCCcccc-----------------CCHhHHH--hccCCcEEEE-eccccceEeccCCcccccc
Q 046905 16 FPR--HLFGRLRRLEVVRDDVATG-----------------FPVGLLE--VLHSLETLHL-SCTSYKEIFSNEGCLESHV 73 (225)
Q Consensus 16 ~~~--~~l~~L~~L~l~~~~~~~~-----------------~p~~~~~--~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l 73 (225)
+|. +.+++|++|+++++..... +|.. ++ ++++|++|++ +|.-...++.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~--------- 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPT--------- 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCT---------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChH---------
Confidence 454 4688999999998764442 6665 45 8999999999 7765544442
Q ss_pred cccccccccccccccceEeccCccCccc-cCCchHHhhc------ccCCEEEEecCcccccccc--cccC-CCC---Ccc
Q 046905 74 GVSKLALIKISFGNLTHLVVFSCKKLMN-LVPSSVAKSL------ERLVTLRVSGCSAMTQVVA--SCDQ-GDS---DVA 140 (225)
Q Consensus 74 ~~~~l~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l------~~L~~L~I~~C~~L~~l~~--~~~~-~~~---~~~ 140 (225)
....+++|+.|+++++..++. .. |.....+ ++|++|++.+|. +..++. .-.. ... +.+
T Consensus 268 -------~l~~l~~L~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 268 -------FLKALPEMQLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp -------TTTTCSSCCEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECC
T ss_pred -------HHhcCCCCCEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCc
Confidence 223356666666666643443 11 2333333 666666666654 334432 1000 000 000
Q ss_pred c-----ccccccccccccceeecCcCCCcceeecCCCccceeCCC-ccEEEEeCCCCCceecCCCCC--CCCeeEEEecC
Q 046905 141 G-----ANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS-LEDLIVTGCCNMKIFTSGDLI--TPKRVDAWYSE 212 (225)
Q Consensus 141 ~-----~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~-L~~L~I~~C~~L~~lp~~~~~--~~~L~~l~i~~ 212 (225)
. .-+ ....+++|+.|.+.++. ++.++.. ...+++ |++|+++++. ++.+|..... +++|+.+++..
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~----l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPAN----FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSE-EEECCTT----SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCc-cccccHh----hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 0 001 23456778888887763 4444433 256788 9999999985 6688876544 45899999986
Q ss_pred Cce
Q 046905 213 SAC 215 (225)
Q Consensus 213 ~~~ 215 (225)
+..
T Consensus 412 N~l 414 (636)
T 4eco_A 412 NEI 414 (636)
T ss_dssp SCT
T ss_pred CcC
Confidence 654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=89.76 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=85.9
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|++|.+.++.. ..++. +..+++|++|++ +| .+..++....... -.+....+ .+....+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i-~~~~~--~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCcc-ccchh--hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 3577888888887543 33443 567888888888 55 4544433111100 00000000 01223345555555
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+++|. +..+. ....+++|+.|++.+|..+..+ .....+++|++|.+.++.- +.+..
T Consensus 117 l~~n~-i~~~~---~~~~l~~L~~L~l~~n~~~~~~----------------~~~~~l~~L~~L~l~~~~~-~~~~~--- 172 (347)
T 4fmz_A 117 LNEDN-ISDIS---PLANLTKMYSLNLGANHNLSDL----------------SPLSNMTGLNYLTVTESKV-KDVTP--- 172 (347)
T ss_dssp CTTSC-CCCCG---GGTTCTTCCEEECTTCTTCCCC----------------GGGTTCTTCCEEECCSSCC-CCCGG---
T ss_pred CcCCc-ccCch---hhccCCceeEEECCCCCCcccc----------------cchhhCCCCcEEEecCCCc-CCchh---
Confidence 55542 33221 1344555555555555433322 1234566777777766632 22221
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
...+++|++|++.+| .++.++. ...+++|+.+.+.++.
T Consensus 173 --~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp --GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred --hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC
Confidence 235788888888887 4555554 4567888888887543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-09 Score=87.23 Aligned_cols=192 Identities=18% Similarity=0.140 Sum_probs=97.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe---cc-CCc---ccccccc---cccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF---SN-EGC---LESHVGV---SKLALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~---~~-~~~---~~~~l~~---~~l~~~~~~l 85 (225)
+|.+.+++|++|+++++. +..+|...+..+++|++|+++...+..+. .. .+. ....+.. ..++.....+
T Consensus 22 ip~~~~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 22 VPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CCSCCCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCCCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 455556688888887654 34556554567788888888223343331 10 000 0000111 1112223345
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc------ccccccccccccc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG------ANLEEEILFSKLR 154 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~------~~~~~~~~~p~L~ 154 (225)
++|++|+++++ .++.+........+++|+.|++.++. +..++...... . ...++ ..+.....+++|+
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 66666666665 23333221234556666666666654 22221110000 0 00000 0112334567788
Q ss_pred eeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 155 ~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
+|.+.++ .++.+.... ...+++|++|++.++ +++.++. .+..+++|+.+++.++..
T Consensus 179 ~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 179 FLDLSQC-QLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp EEECTTS-CCCEECTTT---TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred EEECCCC-CcCCcCHHH---hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCC
Confidence 8888776 344443221 235788888888887 4555554 345678888888886544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-09 Score=93.04 Aligned_cols=187 Identities=12% Similarity=0.023 Sum_probs=81.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc---ccccccc---c---ccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE---SHVGVSK---L---ALIKISFGN 87 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~---~~l~~~~---l---~~~~~~l~~ 87 (225)
.+++|++|+++++......|. .+..+++|++|++ ++.....++.. ..... -.+.... . +.....+++
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred ccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 467788888876554333332 2466777777777 55322222211 00000 0011000 0 112334566
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC------CCcc-----ccccccccccccccee
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD------SDVA-----GANLEEEILFSKLRYM 156 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~------~~~~-----~~~~~~~~~~p~L~~L 156 (225)
|+.|+++++. +.... +.....+++|++|++.++. +........... .+.+ ...+.....+++|++|
T Consensus 378 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 378 LQSLNLSYNE-PLSLK-TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CCEEECCSCS-CEEEC-TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCEEECCCCc-CCcCC-HHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 6666666653 33221 2333455666666665554 221111000000 0000 0011223345666666
Q ss_pred ecCcCCCcce-eecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 157 TMLDLENLTS-FCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 157 ~l~~~~~L~~-~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
.+.+++--.. +.... ....+++|++|++++| +++.+ |..+..+++|+.++++++
T Consensus 455 ~L~~n~l~~~~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTN--SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCBCGGGEECSSC--GGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCccccccch--hhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence 6666532211 11100 1234566666666666 33433 344455666666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=87.12 Aligned_cols=125 Identities=10% Similarity=-0.041 Sum_probs=63.9
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccc-cccccccCC--C---CCccc-----ccccccccc
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMT-QVVASCDQG--D---SDVAG-----ANLEEEILF 150 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~-~l~~~~~~~--~---~~~~~-----~~~~~~~~~ 150 (225)
...+++|++|+++++. +.... +.....+++|++|++.++. +. .++..-... . ...+. ..+.....+
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGTL-PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESCC-CGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HhCCCCCCEEeCCCCc-cCCcC-ChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 3456677777777663 33221 3445567777777777665 32 222111000 0 00000 001112222
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+ |+.|.+.++. ++..... ....+++|++|++.++. +...+.....+++|+++++.++..
T Consensus 198 ~-L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 198 N-LAFVDLSRNM-LEGDASV---LFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp C-CSEEECCSSE-EEECCGG---GCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCC
T ss_pred c-ccEEECcCCc-ccCcCCH---HHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcc
Confidence 3 6777776652 2211111 12357889999998874 443333356778999999986654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=88.30 Aligned_cols=164 Identities=12% Similarity=0.148 Sum_probs=92.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|+.|++.++.. ..++. +..+++|++|++ +| .+..++....... ..+....+ .+....+++|+.|+
T Consensus 38 ~~l~~L~~L~l~~~~i-~~l~~--~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV-TTIEG--VQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCc-cCchh--hhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 3477888888877543 33443 567888888888 44 4444433111100 00000000 01233355566666
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+++|. ++.+ + ....+++|++|++.+|. +..++ ....+++|++|.+.++ .++.+..
T Consensus 114 l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~----------------~l~~l~~L~~L~l~~n-~l~~~~~--- 168 (308)
T 1h6u_A 114 LTSTQ-ITDV--T-PLAGLSNLQVLYLDLNQ-ITNIS----------------PLAGLTNLQYLSIGNA-QVSDLTP--- 168 (308)
T ss_dssp CTTSC-CCCC--G-GGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCCEEECCSS-CCCCCGG---
T ss_pred CCCCC-CCCc--h-hhcCCCCCCEEECCCCc-cCcCc----------------cccCCCCccEEEccCC-cCCCChh---
Confidence 66552 3333 1 24455666666665553 32221 2446788888888876 3444332
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.++ +++.++. ...+++|+.++++++..
T Consensus 169 --l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 169 --LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp --GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred --hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCcc
Confidence 135789999999987 5666664 56788999999987654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=89.32 Aligned_cols=173 Identities=16% Similarity=0.055 Sum_probs=95.4
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccccc---c-cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGVSK---L-ALIKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~~~---l-~~~~~~l~~L 88 (225)
.+++|++|+++++... .+|.. +..+++|++|++ ++ .+..++....... .+ +.... . +.....+++|
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccCEEECCCCccc-cChhh-cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 3678999999876533 34433 456888888888 43 3333322111000 00 00000 0 1112335566
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|++.++. +.....+.....+++|+.|++++|. +..++ ......+++|++|.+.++. ++.+.
T Consensus 153 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------------~~~~~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 153 EVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLS--------------PTAFNSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp CEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEEC--------------TTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred CEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcC--------------HHHhcCCCCCCEEECCCCc-cCccC
Confidence 666666653 2220012334456666666666653 33322 1234467899999998874 33333
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCC-CeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITP-KRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~-~L~~l~i~~~~~ 215 (225)
.. ....+++|++|+++++.--...|.....++ +|+++++.++.+
T Consensus 216 ~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 TF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SG---GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hh---hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 21 123579999999999954444455556664 899999986544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-09 Score=87.81 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=113.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L~ 92 (225)
..+++|++|+++++.. ..++. +..+++|++|++ +| .+..++....... -.+....+ .+....+++|+.|+
T Consensus 63 ~~~~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQI-TDISP--LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138 (347)
T ss_dssp GGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred hhcCCccEEEccCCcc-ccchh--hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEE
Confidence 4588999999998653 34444 578999999999 55 5555533222211 11111111 12255689999999
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVV 172 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~ 172 (225)
+.+|..+..+ .....+++|+.|++.+|. +..++ ....+++|++|.+.++. ++.+..
T Consensus 139 l~~n~~~~~~---~~~~~l~~L~~L~l~~~~-~~~~~----------------~~~~l~~L~~L~l~~n~-l~~~~~--- 194 (347)
T 4fmz_A 139 LGANHNLSDL---SPLSNMTGLNYLTVTESK-VKDVT----------------PIANLTDLYSLSLNYNQ-IEDISP--- 194 (347)
T ss_dssp CTTCTTCCCC---GGGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCSEEECTTSC-CCCCGG---
T ss_pred CCCCCCcccc---cchhhCCCCcEEEecCCC-cCCch----------------hhccCCCCCEEEccCCc-cccccc---
Confidence 9999877765 236789999999999986 43332 24578899999998874 333332
Q ss_pred ccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 173 DYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 173 ~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|.+.++ ++..++. ...+++|+++++.++..
T Consensus 195 --~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp --GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred --ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCCcc
Confidence 246899999999998 5555544 56789999999987644
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=95.47 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=19.9
Q ss_pred eCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 177 KFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|++++|+ +..+| ...+++|+.|++.++.|
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 35556666665553 34343 34556677777765544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-09 Score=93.79 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=44.2
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccc-cccccccceE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALI-KISFGNLTHL 91 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~-~~~l~~L~~L 91 (225)
+++|+.|+++++... .++...+..+++|++|+++...+..++... +... ..+.. ..+++. +..+++|+.|
T Consensus 74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 566777777664432 233222456666676666222344433211 1110 00111 111222 2345666666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+++++ .+..+. +.....+++|+.|++.++
T Consensus 153 ~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 153 SMSNN-NLERIE-DDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp ECCSS-CCCBCC-TTTTTTCTTCCEEECTTS
T ss_pred EeeCC-cCCCCC-hhhhhcCCcCcEEECcCC
Confidence 66665 333332 223445566666666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-09 Score=93.50 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
..+++|+.|++++|. +..+ ..+..+++|+.|++++|. +..+ .....+++|+.|.|.++.
T Consensus 106 ~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~l----------------~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI----------------TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSSC-CCCC----------------GGGGSCTTCSEEECCSSC
T ss_pred ccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCCc-cCCc----------------hhhcccCCCCEEECcCCc
Confidence 346777777777763 4443 235567777777777764 3332 123456677777776662
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
+..+.. ...+++|+.|++++| .+..+|. +..+++|+.|++.++.
T Consensus 165 -l~~~~~-----l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 165 -ISDIVP-----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CCCCGG-----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred -CCCchh-----hccCCCCCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence 222221 134677777777776 5555543 4566777777776543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=99.75 Aligned_cols=125 Identities=10% Similarity=-0.052 Sum_probs=68.8
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CC---CC-----cccccccccccccccce
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SD-----VAGANLEEEILFSKLRY 155 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~-----~~~~~~~~~~~~p~L~~ 155 (225)
+++|+.|++.+|. +.... +.....+++|+.|++.+|.--..++..-.. .. .. ..+..+.....+++|+.
T Consensus 393 ~~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNG-FTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSE-EEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCc-ccccc-CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 4556666666663 22221 344556667777777666421111110000 00 00 00011123445677777
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|.+.++.--..++. ....+++|++|++.+|.--..+|..+..+++|+.+++.++..
T Consensus 471 L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 471 LILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 77777643333332 124578899999999865557787777888999999887654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-09 Score=87.45 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=92.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc--------------cccc-----ccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE--------------SHVG-----VSK 77 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~--------------~~l~-----~~~ 77 (225)
.+++|++|+++++.... ++...+..+++|++|++ ++ .+..+... ..... ..++ ...
T Consensus 139 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp TCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred CCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCe
Confidence 37788888888765433 33333567888888888 43 33332100 00000 0000 000
Q ss_pred cc-cccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc--c--ccccc
Q 046905 78 LA-LIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG--A--NLEEE 147 (225)
Q Consensus 78 l~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~--~--~~~~~ 147 (225)
+. .....+++|+.|++.++ .++.. .....+++|++|+++++. +..++...... . ...++ . .+...
T Consensus 217 l~~~~~~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291 (390)
T ss_dssp CCEEECCCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred eeeccccccccccEEECCCC-CCccc---HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc
Confidence 00 00112356666666666 23332 244566667777776664 33332111000 0 00000 0 00122
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
..+|+|++|.+.++ .++.++.. ...+++|++|++.+++ ++.+| ...+++|+.+++.++.+
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCEEECCCC-cceecCcc----ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 35677888887777 44444432 2457888888888874 56565 45678899999887655
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.3e-09 Score=92.87 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=92.8
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.+|+.|+++++.. ..+|......+++|++|+++...+..++...... ..+....+++|+.|+++++ .++.
T Consensus 433 ~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--------~~~~~~~l~~L~~L~Ls~N-~l~~ 502 (636)
T 4eco_A 433 INVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD--------ENENFKNTYLLTSIDLRFN-KLTK 502 (636)
T ss_dssp CCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE--------TTEECTTGGGCCEEECCSS-CCCB
T ss_pred CCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc--------ccccccccCCccEEECcCC-cCCc
Confidence 3666666665443 2455554455666777666222344333211000 0000112348888888887 4554
Q ss_pred cCCchHHh--hcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC------cceeecCCCc
Q 046905 102 LVPSSVAK--SLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN------LTSFCSGVVD 173 (225)
Q Consensus 102 l~~~~~~~--~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~------L~~~~~~~~~ 173 (225)
+ +.... .+++|+.|+++++. +..++ .....+++|+.|.++++.. ...++..
T Consensus 503 l--p~~~~~~~l~~L~~L~Ls~N~-l~~ip---------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~--- 561 (636)
T 4eco_A 503 L--SDDFRATTLPYLVGIDLSYNS-FSKFP---------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG--- 561 (636)
T ss_dssp C--CGGGSTTTCTTCCEEECCSSC-CSSCC---------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---
T ss_pred c--ChhhhhccCCCcCEEECCCCC-CCCcC---------------hhhhcCCCCCEEECCCCcccccCcccccChHH---
Confidence 4 34444 78888888888875 44443 2344678888888865432 2223222
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++++|. ++.+|.... ++|+.++++++.+
T Consensus 562 -l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 562 -ITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp -GGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTT
T ss_pred -HhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCC
Confidence 2457888888888874 477887543 7888888886643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=93.09 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=45.4
Q ss_pred ccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCc
Q 046905 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESA 214 (225)
Q Consensus 146 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~ 214 (225)
....+++|+.|.+.++. ++.+.... ...+++|++|++++| +++.+|. .+..+++|+.+++.++.
T Consensus 465 ~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCCEEECCCCc-cccCChhh---hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 34467888888888874 44443221 245889999999998 6676664 35778999999998653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-09 Score=83.09 Aligned_cols=136 Identities=19% Similarity=0.153 Sum_probs=67.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|.+..++|+.|+++++......|. .+..+++|++|+++-..+..++.. .+..+++|+.|++++
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~---------------~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVG---------------VFDSLTQLTVLDLGT 97 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCS
T ss_pred cCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChh---------------hcccCCCcCEEECCC
Confidence 4444456666666666443332232 245566666666622234333221 122356666666666
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .++.+. +.....+++|+.|++.++. +..++ .....+++|+.|.+.+. +++.+.... .
T Consensus 98 N-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~ 155 (229)
T 3e6j_A 98 N-QLTVLP-SAVFDRLVHLKELFMCCNK-LTELP---------------RGIERLTHLTHLALDQN-QLKSIPHGA---F 155 (229)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSSC-CCSCC---------------TTGGGCTTCSEEECCSS-CCCCCCTTT---T
T ss_pred C-cCCccC-hhHhCcchhhCeEeccCCc-ccccC---------------cccccCCCCCEEECCCC-cCCccCHHH---H
Confidence 5 444432 2233456666666666553 44433 12334566666666554 344443221 2
Q ss_pred eeCCCccEEEEeCC
Q 046905 176 FKFPSLEDLIVTGC 189 (225)
Q Consensus 176 ~~~p~L~~L~I~~C 189 (225)
..+++|+.|.+.+.
T Consensus 156 ~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 156 DRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECTTS
T ss_pred hCCCCCCEEEeeCC
Confidence 23566666666553
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=93.97 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=46.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
++|+.|.+.++ +++.++... ..+++|++|++++| +++.+|.. +..+++|+++++.++.+
T Consensus 421 ~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 421 PRIKVLDLHSN-KIKSIPKQV----VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSS-CCCCCCGGG----GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCC-cccccchhh----hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 68899998887 555555432 47899999999998 78889876 67889999999986543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-09 Score=89.43 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=24.6
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
...+++|+.|+++++. +....+......+++|++|++.++.
T Consensus 125 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred ccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc
Confidence 3346677777777663 4444322335567777777777764
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-09 Score=78.84 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=91.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|++|+++++. ...++. +..+++|++|++ ++ .+..... .....+++|+.|++++|.
T Consensus 63 ~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~---------------~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 63 EYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLRIMGK-DVTSDKI---------------PNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp GGCTTCSEEEEESCC-CSCCGG--GTTCTTCCEEEEECT-TCBGGGS---------------CCCTTCTTCCEEECCSSB
T ss_pred hcCCCCCEEEccCCC-CCcchh--hhcCCCCCEEEeECC-ccCcccC---------------hhhcCCCCCCEEEecCCc
Confidence 468899999999873 344432 678999999999 54 3332111 223458999999999984
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
+.... +.....+++|++|++++|..+..++ ....+++|++|.+.++. ++.+. . ...
T Consensus 124 -i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~----------------~l~~l~~L~~L~l~~n~-i~~~~-~----l~~ 179 (197)
T 4ezg_A 124 -HDDSI-LTKINTLPKVNSIDLSYNGAITDIM----------------PLKTLPELKSLNIQFDG-VHDYR-G----IED 179 (197)
T ss_dssp -CBGGG-HHHHTTCSSCCEEECCSCTBCCCCG----------------GGGGCSSCCEEECTTBC-CCCCT-T----GGG
T ss_pred -cCcHh-HHHHhhCCCCCEEEccCCCCccccH----------------hhcCCCCCCEEECCCCC-CcChH-H----hcc
Confidence 44422 4566789999999999997565543 34568899999998874 44433 1 246
Q ss_pred CCCccEEEEeCCC
Q 046905 178 FPSLEDLIVTGCC 190 (225)
Q Consensus 178 ~p~L~~L~I~~C~ 190 (225)
+++|++|++.+.+
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 8999999998753
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-09 Score=86.56 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=97.9
Q ss_pred cCccEEEEeeCCccc--cCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 22 GRLRRLEVVRDDVAT--GFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
.+++.|+++++.... .+|.. +..+++|++|++ ++..+....+ .....+++|++|+++++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p---------------~~l~~l~~L~~L~Ls~n~- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIP---------------PAIAKLTQLHYLYITHTN- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCC---------------GGGGGCTTCSEEEEEEEC-
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCC---------------hhHhcCCCCCEEECcCCe-
Confidence 589999999876555 56765 678999999999 6776653321 234468999999999984
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccc-cccccccC-CC---CCc-----cccccccccccc-ccceeecCcCCCccee
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMT-QVVASCDQ-GD---SDV-----AGANLEEEILFS-KLRYMTMLDLENLTSF 167 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~-~l~~~~~~-~~---~~~-----~~~~~~~~~~~p-~L~~L~l~~~~~L~~~ 167 (225)
+.... +.....+++|++|+++++. +. .++..-.. .. ... .+..+.....++ +|++|.+.++.--..+
T Consensus 113 l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 113 VSGAI-PDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp CEEEC-CGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eCCcC-CHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 44332 4567789999999999986 33 22211000 00 000 000011222233 4555555444211111
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+. ....++ |++|++.++.--...|..+..+++|+.+++..+..
T Consensus 191 ~~----~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 191 PP----TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CG----GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred Ch----HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 11 112233 77777777632223444556778888888876544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-09 Score=83.91 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=91.0
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|....++|++|+++++.. ..++...+..+++|++|++ ++ .+..++.. ....+++|++|+++
T Consensus 22 ip~~l~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---------------~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDG---------------AYQSLSHLSTLILT 84 (276)
T ss_dssp CCSSSCTTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTC-CCCEECTT---------------TTTTCTTCCEEECT
T ss_pred cCCCCCCCccEEECCCCcc-cccCHhHhccccCCcEEECCCC-cCCccCHH---------------HccCCcCCCEEECC
Confidence 5555566899999998654 3444434678999999999 55 56665431 11224455555555
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCc-----cccc-ccccccccccceeecCcCCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDV-----AGAN-LEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~-----~~~~-~~~~~~~p~L~~L~l~~~~~ 163 (225)
++. ++.+. +.....+++|++|++.++. +..++...... . ... .... +.....+++|++|.+.++.
T Consensus 85 ~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~- 160 (276)
T 2z62_A 85 GNP-IQSLA-LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK- 160 (276)
T ss_dssp TCC-CCEEC-TTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-
T ss_pred CCc-cCccC-hhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-
Confidence 442 22221 1223344455555544442 22221100000 0 000 0000 1234456778888777763
Q ss_pred cceeecCCCccceeCCCcc----EEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 164 LTSFCSGVVDYTFKFPSLE----DLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~----~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++.+.... ...+++|+ +|++.++ .++.+|.......+|+++++.++..
T Consensus 161 l~~~~~~~---~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 161 IQSIYCTD---LRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp CCEECGGG---GHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCC
T ss_pred CCcCCHHH---hhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCce
Confidence 33333211 12234444 6777776 5667776555556899999986544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-09 Score=85.30 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=90.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---ccccccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNL 88 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L 88 (225)
||...+.++..+.+.+.......+ ...+++|++|++ +| .+..+........ ..+.. ..+.+ ...+++|
T Consensus 18 f~d~~l~~~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L 92 (291)
T 1h6t_A 18 FSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNL 92 (291)
T ss_dssp CCSHHHHHHHHHHTTCSCTTSEEC---HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CCCHHHHHHHHHHhcCCCcccccc---hhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCC
Confidence 344344444444444332222222 457899999999 55 4554422111100 00110 01111 3345555
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|+++++ .++.+ .....+++|++|++.+|. +..+ .....+++|+.|.+.++ .++.+.
T Consensus 93 ~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n~-i~~~----------------~~l~~l~~L~~L~l~~n-~l~~~~ 150 (291)
T 1h6t_A 93 GWLFLDEN-KVKDL---SSLKDLKKLKSLSLEHNG-ISDI----------------NGLVHLPQLESLYLGNN-KITDIT 150 (291)
T ss_dssp CEEECCSS-CCCCG---GGGTTCTTCCEEECTTSC-CCCC----------------GGGGGCTTCCEEECCSS-CCCCCG
T ss_pred CEEECCCC-cCCCC---hhhccCCCCCEEECCCCc-CCCC----------------hhhcCCCCCCEEEccCC-cCCcch
Confidence 55555555 23332 123455555555555553 3222 23446788888888876 233332
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|++|++++| +++.++. ...+++|+.++++++..
T Consensus 151 -----~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 151 -----VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp -----GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCcC
Confidence 2346899999999998 6676665 67889999999987644
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=95.65 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=91.0
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|++|+++++.... .+...+..+++|++|++ ++ .+..++.. ....+++|++|+++++.
T Consensus 47 ~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---------------~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 47 RACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDN-HLSSLSSS---------------WFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp SSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS-CCCSCCHH---------------HHTTCTTCCEEECTTCC
T ss_pred hcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCC-ccCccCHH---------------HhccCCCCcEEECCCCc
Confidence 348899999999866444 44334678999999999 54 44443321 12346677777777663
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCC-----Cc-----ccccccccccccccceeecCcCCCccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS-----DV-----AGANLEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~-----~~-----~~~~~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
++.+..+.....+++|++|++.++..+..++......-. +. .+..+.....+++|++|.+.+... ..+
T Consensus 110 -l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~ 187 (549)
T 2z81_A 110 -YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFL 187 (549)
T ss_dssp -CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTH
T ss_pred -ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-ccc
Confidence 433222234456677777777776544444311100000 00 000011222344455555443321 111
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceec---CC-CCCCCCeeEEEecCCce
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFT---SG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp---~~-~~~~~~L~~l~i~~~~~ 215 (225)
... ....+++|++|++.++ +++.++ .. ....++|+.+++.++..
T Consensus 188 ~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 188 LEI---FADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp HHH---HHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred chh---hHhhcccccEEEccCC-ccccccccccchhhhhhcccceecccccc
Confidence 110 0123788899998887 344432 11 13467888888876654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=85.00 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=96.7
Q ss_pred cEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccccc----ccc-ccccccccceEecc
Q 046905 25 RRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSK----LAL-IKISFGNLTHLVVF 94 (225)
Q Consensus 25 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~----l~~-~~~~l~~L~~L~i~ 94 (225)
+++.-++ ..++.+|..+ .+++++|+++-..++.++... +... ..+.... ++. .+..+++|+.+.+.
T Consensus 12 ~~v~C~~-~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4444443 3456778653 578999999556788876521 1111 0111111 111 12234555555555
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCC-----ccc---cc---ccccccc-cccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSD-----VAG---AN---LEEEILF-SKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~-----~~~---~~---~~~~~~~-p~L~~L~l~~~~ 162 (225)
++.+++.+. +.....+++|+.|++.++. +..++......... ..+ .. ....... ..++.|.+.+.
T Consensus 88 ~~N~l~~l~-~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 88 KANNLLYIN-PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp EETTCCEEC-TTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cCCcccccC-chhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-
Confidence 555666553 2334567777777777664 44443221110000 000 00 0001111 23555555443
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+++.+..+. +..++|++|.+.++..++.+|.+ +..+++|+.|+++++..
T Consensus 165 ~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 165 GIQEIHNSA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CCCEECTTS----STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred cccCCChhh----ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 455565543 34568999999999999999875 46789999999986644
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-09 Score=82.82 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=93.4
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+++|++|+++++... .++...+..+++|++|+++...+..++. .....+++|+.|+++++ .+
T Consensus 57 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~L~~N-~l 119 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPL---------------GVFDHLTQLDKLYLGGN-QL 119 (251)
T ss_dssp TCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT---------------TTTTTCTTCCEEECCSS-CC
T ss_pred CcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccCh---------------hHhcccCCCCEEEcCCC-cC
Confidence 4789999999986544 4444446789999999994445554432 12335789999999998 56
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
+.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+. .++.+.... ...++
T Consensus 120 ~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~ 179 (251)
T 3m19_A 120 KSLP-SGVFDRLTKLKELRLNTNQ-LQSIPA--------------GAFDKLTNLQTLSLSTN-QLQSVPHGA---FDRLG 179 (251)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCT
T ss_pred CCcC-hhHhccCCcccEEECcCCc-CCccCH--------------HHcCcCcCCCEEECCCC-cCCccCHHH---HhCCC
Confidence 6553 3345678999999999884 665542 12346789999999887 444454322 24578
Q ss_pred CccEEEEeCCC
Q 046905 180 SLEDLIVTGCC 190 (225)
Q Consensus 180 ~L~~L~I~~C~ 190 (225)
+|++|++.+++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 99999998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=93.74 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=48.3
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
++|+.|.+.++ +++.++.+. ..+++|++|+++++ +++.+|.. +..+++|+.+++.++.|
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDV----THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTT----TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CcCCEEECCCC-cCcccChhh----cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 68999999888 677776553 47899999999997 68889987 67889999999986544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-09 Score=88.81 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=98.9
Q ss_pred cccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---cccccccccccccce
Q 046905 18 RHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTH 90 (225)
Q Consensus 18 ~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~ 90 (225)
.+.+++|+.|+++++... .++. +..+++|++|++ +| .+..+........ -.+.. ...++ ...+++|+.
T Consensus 217 ~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 456889999999986533 3332 577899999999 55 3443332221111 00111 11111 345677777
Q ss_pred EeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecC
Q 046905 91 LVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSG 170 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~ 170 (225)
|++.+| .++.+. ....+++|+.|++++|. +..++ ....+++|+.|.+.++ .++.+.
T Consensus 292 L~L~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~----------------~~~~l~~L~~L~l~~n-~l~~~~-- 347 (466)
T 1o6v_A 292 LELNEN-QLEDIS---PISNLKNLTYLTLYFNN-ISDIS----------------PVSSLTKLQRLFFYNN-KVSDVS-- 347 (466)
T ss_dssp EECCSS-CCSCCG---GGGGCTTCSEEECCSSC-CSCCG----------------GGGGCTTCCEEECCSS-CCCCCG--
T ss_pred EEcCCC-cccCch---hhcCCCCCCEEECcCCc-CCCch----------------hhccCccCCEeECCCC-ccCCch--
Confidence 777776 344442 24567777777777774 33322 2346788888888887 444442
Q ss_pred CCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 171 VVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 171 ~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|+.|++.+|+- ...+. ...+++|+.+.+.++.+
T Consensus 348 ---~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 348 ---SLANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp ---GGTTCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEEE
T ss_pred ---hhccCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCcc
Confidence 124578899999988854 44333 56788888888876544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=83.49 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=106.2
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc-CCccc-cc-----cccc---ccccccc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN-EGCLE-SH-----VGVS---KLALIKI 83 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~-~~~~~-~~-----l~~~---~l~~~~~ 83 (225)
.+|...+++|+.|+++++.. ..++...+..+++|++|++ ++. +...... ..... .+ +... .++. .
T Consensus 114 ~l~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~ 189 (330)
T 1xku_A 114 ELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--G 189 (330)
T ss_dssp BCCSSCCTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--S
T ss_pred ccChhhcccccEEECCCCcc-cccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc--c
Confidence 35556668999999997653 4566666788999999999 543 3211000 00000 00 1111 1111 1
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
.+++|+.|+++++. ++.+. +.....+++|++|+++++. +..++. .....+++|++|.+.++ .
T Consensus 190 ~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~ 251 (330)
T 1xku_A 190 LPPSLTELHLDGNK-ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDN--------------GSLANTPHLRELHLNNN-K 251 (330)
T ss_dssp CCTTCSEEECTTSC-CCEEC-TGGGTTCTTCCEEECCSSC-CCEECT--------------TTGGGSTTCCEEECCSS-C
T ss_pred ccccCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCc-CceeCh--------------hhccCCCCCCEEECCCC-c
Confidence 23678888888773 55442 3445677888888888775 443321 23456789999999887 4
Q ss_pred cceeecCCCccceeCCCccEEEEeCCCCCceecCCCC-------CCCCeeEEEecCCce
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDL-------ITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~-------~~~~L~~l~i~~~~~ 215 (225)
++.++... ..+++|++|++.++ +++.+|.... ..+.++.+.+.++.+
T Consensus 252 l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 252 LVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 55555432 45789999999987 5676664321 246788888876654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=91.26 Aligned_cols=187 Identities=14% Similarity=0.059 Sum_probs=94.5
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---cccccc----cccc-cccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGVS----KLAL-IKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~~----~l~~-~~~~l~~L 88 (225)
.+++|+.|+++++. +..+|.. +..+++|++|++ ++ .+..++... .... -.+... .++. ....+++|
T Consensus 276 ~l~~L~~L~l~~n~-l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSELPSG-LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSC-CSCCCSS-CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCc-cCCCChh-hcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 47899999999865 3467765 578999999999 55 344332211 0000 001111 1111 23456777
Q ss_pred ceEeccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccCC--C---CCccc-----cc-cccccccccccee
Q 046905 89 THLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVAG-----AN-LEEEILFSKLRYM 156 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~~-----~~-~~~~~~~p~L~~L 156 (225)
+.|+++++. +.... .+.....+++|++|++.+|. +..++...... . .+.++ .. ......+++|+.|
T Consensus 353 ~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 353 RELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 777777763 33321 12334567778888887775 33332111000 0 00000 00 0112345566666
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCc-eec--CCCCCCCCeeEEEecCCce
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMK-IFT--SGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~-~lp--~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.++.-- ..... ....+++|++|++.+|+--. .+| ..+..+++|+.++++++..
T Consensus 431 ~l~~n~l~-~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 431 NLSHSLLD-ISSEQ---LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp ECTTCCCB-TTCTT---TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-CcCHH---HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 66655321 11111 12346777777777774322 122 2245667777777775543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-09 Score=79.18 Aligned_cols=138 Identities=18% Similarity=0.236 Sum_probs=88.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+..+++|++|++.
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNG---------------VFNKLTSLTYLNLS 84 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECC
T ss_pred CCCCCCCCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChh---------------hcCCCCCcCEEECC
Confidence 34556677899999988653 345555457789999999933455544321 12347888999988
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+. .++.+....
T Consensus 85 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~l~~N-~l~~~~~~~--- 143 (208)
T 2o6s_A 85 TN-QLQSLP-NGVFDKLTQLKELALNTNQ-LQSLPD--------------GVFDKLTQLKDLRLYQN-QLKSVPDGV--- 143 (208)
T ss_dssp SS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTT---
T ss_pred CC-cCCccC-HhHhcCccCCCEEEcCCCc-CcccCH--------------hHhccCCcCCEEECCCC-ccceeCHHH---
Confidence 87 455542 2334678888998888774 544431 12345678888888775 344444321
Q ss_pred ceeCCCccEEEEeCC
Q 046905 175 TFKFPSLEDLIVTGC 189 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C 189 (225)
...+++|++|++.++
T Consensus 144 ~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred hccCCCccEEEecCC
Confidence 234778888888774
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-09 Score=85.51 Aligned_cols=175 Identities=13% Similarity=0.026 Sum_probs=96.0
Q ss_pred ccccCccEEEEeeCCccccCCH---hHHHhccCCcEEEEeccccceEeccC--Cccc---ccccccc------cc--ccc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPV---GLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSK------LA--LIK 82 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~------l~--~~~ 82 (225)
..+++|++|+++++......+. ..+..+++|++|+++...+..++... .... ..+.... ++ ...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4478999999998665444331 11235889999999333444443211 1100 0011111 11 111
Q ss_pred ccccccceEeccCccCccccCC-c-hHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCc
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVP-S-SVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLD 160 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~-~-~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 160 (225)
..+++|++|++++| +++.+.. + .....+++|++|+++++. +..+..... .....+++|++|.+.+
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-----------~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-----------PRCMWSSALNSLNLSF 260 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-----------SSCCCCTTCCCEECCS
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-----------HhccCcCcCCEEECCC
Confidence 34666777777766 3443210 0 012456777777777664 333211000 1112237888888877
Q ss_pred CCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 161 LENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 161 ~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+ .++.++... +++|++|+++++ +++.+|. ...+++|+.++++++.+
T Consensus 261 N-~l~~lp~~~------~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 261 A-GLEQVPKGL------PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp S-CCCSCCSCC------CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred C-CCCchhhhh------cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 6 355555432 478999999887 6676665 46778899988876654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=89.37 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=100.7
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccc-cc-ccccccccccceEe
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVS-KL-ALIKISFGNLTHLV 92 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~-~l-~~~~~~l~~L~~L~ 92 (225)
..+++|+.|++.++.. ..+| . +..+++|++|++ +|.- ..++.. .... ..+... .. ......+++|+.|+
T Consensus 282 ~~l~~L~~L~l~~~~~-~~l~-~-l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSI-KYLE-D-VPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp GGGTTCSEEEEESCCC-CCCC-C-CCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred ccCCCCCEEEecCccc-hhhh-h-ccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 3466777777776443 3444 1 455677777777 5543 444422 1111 001000 00 01233467788888
Q ss_pred ccCccCccccC-CchHHhhcccCCEEEEecCcccccccccccC-CC---CCcc-----cccc-cccccccccceeecCcC
Q 046905 93 VFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GD---SDVA-----GANL-EEEILFSKLRYMTMLDL 161 (225)
Q Consensus 93 i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~---~~~~-----~~~~-~~~~~~p~L~~L~l~~~ 161 (225)
++++. +.... .+.....+++|++|++.+|. +..++..-.. .. ...+ +... .....+++|++|.+.++
T Consensus 357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 87773 33331 13455677888888887775 4443311000 00 0000 0011 23345678888888887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCc-eecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMK-IFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~-~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.--..... ....+++|++|++.+|.--. .+|..+..+++|+.++++++..
T Consensus 435 ~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 435 NTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 64332222 12457899999999984433 2677778889999999987644
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-08 Score=93.13 Aligned_cols=159 Identities=16% Similarity=0.065 Sum_probs=98.7
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
++|+.|+++++.. ..+|......+++|++|+++...+..++...... ..+....+++|+.|++++| .+..
T Consensus 673 ~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~--------~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 673 INASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKP--------KDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp CCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC--------TTSCCTTGGGCCEEECCSS-CCCC
T ss_pred CCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhcc--------ccccccccCCccEEECCCC-CCcc
Confidence 3677777766543 3566665556777777777223444443321000 0011123558999999988 5665
Q ss_pred cCCchHHh--hcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc------ceeecCCCc
Q 046905 102 LVPSSVAK--SLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL------TSFCSGVVD 173 (225)
Q Consensus 102 l~~~~~~~--~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L------~~~~~~~~~ 173 (225)
+ +.... .+++|+.|+++++. +..++ .....+++|+.|.+.+++.+ ..++.
T Consensus 743 l--p~~l~~~~l~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~---- 800 (876)
T 4ecn_A 743 L--SDDFRATTLPYLSNMDVSYNC-FSSFP---------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPT---- 800 (876)
T ss_dssp C--CGGGSTTTCTTCCEEECCSSC-CSSCC---------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCT----
T ss_pred c--hHHhhhccCCCcCEEEeCCCC-CCccc---------------hhhhcCCCCCEEECCCCCCcccccccccChH----
Confidence 4 34444 78999999998875 55443 23456788999988775422 22222
Q ss_pred cceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
....+++|+.|++++|. +..+|.... ++|+.|+++++.+
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 12458899999999884 488887643 6889998886643
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-09 Score=86.77 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=89.3
Q ss_pred ccCccEEEEeeCCccccCCHhHH-HhccCCcEEEE-eccccceEec-cCCcccccccccccccccccccccceEeccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLL-EVLHSLETLHL-SCTSYKEIFS-NEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l-~c~~l~~~~~-~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+++|++|+++++......|...+ ..+++|++|++ ++. +..... ... .....+++|++|+++++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE------------LQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH------------HHTTBCSCCCEEEEECCS
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH------------HHhhhccCCCEEEeeCCC
Confidence 56899999999776666665432 67999999999 543 332110 000 001124445555554442
Q ss_pred CccccCCchHHhhcccCCEEEEecCccccc--cccccc---C---CCCCccc--cc--cc----ccccccccceeecCcC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQ--VVASCD---Q---GDSDVAG--AN--LE----EEILFSKLRYMTMLDL 161 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~--l~~~~~---~---~~~~~~~--~~--~~----~~~~~p~L~~L~l~~~ 161 (225)
+.... +.....+++|++|+++++.-... ++.... . .....+. .. .. -...+++|++|.+.++
T Consensus 157 -l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 157 -SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp -SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred -cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 22221 12223444555555544431110 000000 0 0000000 00 00 1235588889988876
Q ss_pred CCccee-ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSF-CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~-~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
. ++.+ +.... ....+++|++|+++++ +++.+|... .++|+.++++.+..
T Consensus 235 ~-l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 235 S-LRATVNPSAP-RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp C-CCCCCCSCCS-SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCCC
T ss_pred C-CCccchhhHH-hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCcC
Confidence 4 3333 22110 0112379999999887 677888765 37999999986654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-09 Score=85.45 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=45.8
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+++|++|.+.++. ++.+... ..+++|++|+++++ +++.+|..+..+++|+.++++++..
T Consensus 167 ~l~~L~~L~L~~N~-l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 167 SSDTLEHLNLQYNF-IYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp GTTTCCEEECTTSC-CCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC
T ss_pred ccCcCCEEECCCCc-Ccccccc-----cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcc
Confidence 46788888888774 5555432 24889999999997 6788887777889999999986644
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-09 Score=93.59 Aligned_cols=159 Identities=17% Similarity=0.045 Sum_probs=88.6
Q ss_pred cccccccCccEEEEeeCCccccC--CHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEe
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGF--PVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLV 92 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~ 92 (225)
++...+++|+.|+++++...... +.. +..+++|++|++ +|. +..++.. ...+++|+.|+
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~----------------~~~l~~L~~L~ 402 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNG-VITMSSN----------------FLGLEQLEHLD 402 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHH-HHTCSCCCEEECCSCS-EEEEEEE----------------EETCTTCCEEE
T ss_pred cccccCCCCCEEeCcCCccCcccccccc-ccccCccCEEECCCCc-ccccccc----------------ccccCCCCEEE
Confidence 34467899999999986543221 333 578999999999 553 4444321 22356667777
Q ss_pred ccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc-ceeecCC
Q 046905 93 VFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL-TSFCSGV 171 (225)
Q Consensus 93 i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L-~~~~~~~ 171 (225)
+.+|. +....+......+++|+.|++.+|. +..++. .....+++|+.|.+.++.-- ..++..
T Consensus 403 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~p~~- 465 (570)
T 2z63_A 403 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN--------------GIFNGLSSLEVLKMAGNSFQENFLPDI- 465 (570)
T ss_dssp CTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT--------------TTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred ccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch--------------hhhhcCCcCcEEECcCCcCccccchhh-
Confidence 66663 3332222234556667777766664 222211 12234566666666666422 122221
Q ss_pred CccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
...+++|++|++.+|. ++.+ |..+..+++|+++++.++
T Consensus 466 ---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 466 ---FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ---CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred ---hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence 1346666777766663 3433 445556666666666644
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=87.19 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=47.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..++|++|+++++......|. .+..+++|++|++ ++.-...++.. .+..+++|++|+++++.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~---------------~~~~l~~L~~L~Ls~n~- 90 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNN---------------TFRGLSSLIILKLDYNQ- 90 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTT---------------TTTTCTTCCEEECTTCT-
T ss_pred CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcc---------------cccccccCCEEeCCCCc-
Confidence 346889999887654443343 3577888999988 66433333221 12235556666666553
Q ss_pred ccccCCchHHhhcccCCEEEEecCc
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+.... +.....+++|++|++.+|.
T Consensus 91 l~~~~-~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 91 FLQLE-TGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp TCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred cCccC-hhhccCcccCCEEeCCCCC
Confidence 33321 2334455666666666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=78.15 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=16.6
Q ss_pred CCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 178 FPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
+++|++|++.++ +++.+ |..+..+++|+.+++.++
T Consensus 128 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 128 LSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 455555555554 33433 333344555555555543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=81.65 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=71.1
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
..+++|+.|+++++. +..++. +..+++|++|+++...+..++. ...+++|+.|+++++ .
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-----------------l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLAG--MQFFTNLKELHLSHNQISDLSP-----------------LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-----------------GTTCSSCCEEECCSS-C
T ss_pred hhcCcCcEEECcCCC-cccchH--HhhCCCCCEEECCCCccCCChh-----------------hccCCCCCEEECCCC-c
Confidence 346778888887654 334552 5677888888873334444432 223555666666655 3
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeC
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKF 178 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~ 178 (225)
++.+. .. .. ++|+.|++++|. +..++ ....+++|+.|.+.++. ++.+.. ...+
T Consensus 97 l~~l~--~~-~~-~~L~~L~L~~N~-l~~~~----------------~l~~l~~L~~L~Ls~N~-i~~~~~-----l~~l 149 (263)
T 1xeu_A 97 LKNLN--GI-PS-ACLSRLFLDNNE-LRDTD----------------SLIHLKNLEILSIRNNK-LKSIVM-----LGFL 149 (263)
T ss_dssp CSCCT--TC-CC-SSCCEEECCSSC-CSBSG----------------GGTTCTTCCEEECTTSC-CCBCGG-----GGGC
T ss_pred cCCcC--cc-cc-CcccEEEccCCc-cCCCh----------------hhcCcccccEEECCCCc-CCCChH-----HccC
Confidence 33331 11 11 556666665553 33321 22344555555555442 222221 1235
Q ss_pred CCccEEEEeCCCCCceecCCCCCCCCeeEEEecC
Q 046905 179 PSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSE 212 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~ 212 (225)
++|++|+++++ +++.+ ..+..+++|+.+++.+
T Consensus 150 ~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp TTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEE
T ss_pred CCCCEEECCCC-cCcch-HHhccCCCCCEEeCCC
Confidence 55666665554 33333 2234455555555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-09 Score=76.65 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=94.8
Q ss_pred ccccccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 17 PRHLFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+....++|+.|+++++... ..+|.. +..+++|++|++ +|. +..+ . ....+++|+.|+++
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~----------------~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV-S----------------NLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-S----------------SCCCCSSCCEEEEE
T ss_pred ccCCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-h----------------hhccCCCCCEEECc
Confidence 3445679999999986643 356654 478999999999 554 5544 1 12348899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
+|. +... .+.....+++|+.|++.+|. +..++.. .....+++|++|.+.+++ +..+.......
T Consensus 80 ~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~ 142 (168)
T 2ell_A 80 ENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTL-------------EPLKKLECLKSLDLFNCE-VTNLNDYRESV 142 (168)
T ss_dssp SCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGG-------------GGGSSCSCCCEEECCSSG-GGTSTTHHHHH
T ss_pred CCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhH-------------HHHhcCCCCCEEEeeCCc-CcchHHHHHHH
Confidence 984 5553 25566679999999999984 5554311 134467889999988873 22222100001
Q ss_pred ceeCCCccEEEEeCCCCCceecC
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTS 197 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~ 197 (225)
...+|+|++|++.+|+ ++.+|.
T Consensus 143 ~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 143 FKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HTTCSSCCEETTEETT-SCBCCS
T ss_pred HHhCccCcEecCCCCC-hhhccc
Confidence 2358899999998884 444554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.5e-09 Score=92.66 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=105.9
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|+.|.+.++. +..++. +..+++|+.|++ +| .+..++. ...+++|+.|++++|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-----------------l~~l~~L~~L~Ls~N- 97 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-----------------LTNLKNLGWLFLDEN- 97 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTS-CCCCCGG-----------------GGGCTTCCEEECCSS-
T ss_pred hcCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCC-CCCCChh-----------------hccCCCCCEEECcCC-
Confidence 457888888888755 344453 578899999999 54 3444322 335889999999998
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
.+..+ ..+..+++|+.|++.+|. +..++ ....+++|+.|.|.++ .++.+. ....
T Consensus 98 ~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~----------------~l~~l~~L~~L~Ls~N-~l~~l~-----~l~~ 151 (605)
T 1m9s_A 98 KIKDL---SSLKDLKKLKSLSLEHNG-ISDIN----------------GLVHLPQLESLYLGNN-KITDIT-----VLSR 151 (605)
T ss_dssp CCCCC---TTSTTCTTCCEEECTTSC-CCCCG----------------GGGGCTTCSEEECCSS-CCCCCG-----GGGS
T ss_pred CCCCC---hhhccCCCCCEEEecCCC-CCCCc----------------cccCCCccCEEECCCC-ccCCch-----hhcc
Confidence 45554 245788999999999886 44432 3456899999999887 344432 2346
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|+.|++++| ++..++. +..+++|+.|+++++..
T Consensus 152 l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 152 LTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCCC
Confidence 899999999998 5666654 67889999999987644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-08 Score=89.15 Aligned_cols=63 Identities=8% Similarity=-0.076 Sum_probs=45.1
Q ss_pred ccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
..+++|+.|.+.++ +++.++.+. ...+++|+.|++.++ +++.+|... ..+++|+.+++.++..
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~---~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEV---FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCC-CCCCCCHHH---cccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 45678888888776 455555432 245789999999775 778887653 5788999999987644
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=88.90 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=92.3
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
.+|.+.-+++++|+++++. +..+|...+..+++|++|++ +| .+..+++. .+..+++|++|++
T Consensus 45 ~vP~~lp~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~---------------~f~~L~~L~~L~L 107 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG---------------AYQSLSHLSTLIL 107 (635)
T ss_dssp SCCSSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTT---------------TTTTCTTCCEEEC
T ss_pred ccCCCCCcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChh---------------HhcCCCCCCEEEc
Confidence 3555545589999998754 45565555678999999999 55 56666431 2345788999999
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCc
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVD 173 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 173 (225)
+++ +++.+. +.....+++|++|++.++. +..++. .....+++|++|.+.+.. ++.+....
T Consensus 108 s~N-~l~~l~-~~~f~~L~~L~~L~Ls~N~-l~~l~~--------------~~~~~L~~L~~L~Ls~N~-l~~~~~~~-- 167 (635)
T 4g8a_A 108 TGN-PIQSLA-LGAFSGLSSLQKLVAVETN-LASLEN--------------FPIGHLKTLKELNVAHNL-IQSFKLPE-- 167 (635)
T ss_dssp TTC-CCCEEC-GGGGTTCTTCCEEECTTSC-CCCSTT--------------CCCTTCTTCCEEECCSSC-CCCCCCCG--
T ss_pred cCC-cCCCCC-HHHhcCCCCCCEEECCCCc-CCCCCh--------------hhhhcCcccCeeccccCc-cccCCCch--
Confidence 988 477663 3456778899999998884 555542 123456778888777652 22222211
Q ss_pred cceeCCCccEEEEeCCCCCcee
Q 046905 174 YTFKFPSLEDLIVTGCCNMKIF 195 (225)
Q Consensus 174 ~~~~~p~L~~L~I~~C~~L~~l 195 (225)
....+++|++|++.++ +++.+
T Consensus 168 ~~~~l~~L~~L~L~~N-~l~~~ 188 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSN-KIQSI 188 (635)
T ss_dssp GGGGCTTCCEEECCSS-CCCEE
T ss_pred hhccchhhhhhcccCc-ccccc
Confidence 2234677888887776 34433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=84.55 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=96.0
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---ccccc---cccccccccccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTHL 91 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~L 91 (225)
..+++|+.|+++++......| ++.+++|++|++ +| .+..+........ ..+.. ....+ ...+++|+.|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP---LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred ccCCCCCEEEecCCccccccc---ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 468899999999876544333 467999999999 55 3444322111100 00100 01111 3334555555
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
++++| .+..+. ....+++|+.|++.+|. +..++ ....+++|+.|.+.++. ++.+..
T Consensus 271 ~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~----------------~~~~l~~L~~L~L~~n~-l~~~~~-- 326 (466)
T 1o6v_A 271 KLGAN-QISNIS---PLAGLTALTNLELNENQ-LEDIS----------------PISNLKNLTYLTLYFNN-ISDISP-- 326 (466)
T ss_dssp ECCSS-CCCCCG---GGTTCTTCSEEECCSSC-CSCCG----------------GGGGCTTCSEEECCSSC-CSCCGG--
T ss_pred ECCCC-ccCccc---cccCCCccCeEEcCCCc-ccCch----------------hhcCCCCCCEEECcCCc-CCCchh--
Confidence 55555 233321 13455556666665553 32221 24567889999998873 333322
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|++.+| +++.++ ....+++|+.+++.++..
T Consensus 327 ---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 236899999999998 566664 356789999999986654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-09 Score=95.91 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred cccCccEEEEeeCCccccCC--------------HhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFP--------------VGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p--------------~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
.|++|+.|.+.++.....+. ..+...+++|++|++ +|. +..... ......
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~--------------~~l~~~ 128 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL--------------ELIAKS 128 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH--------------HHHHHH
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH--------------HHHHHh
Confidence 46788888888754332221 122356788888888 653 221100 011114
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|++|++.+|..+...........+++|++|++.+|. +.......- ......+++|++|.+.++.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l----------~~~~~~~~~L~~L~l~~~~-- 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL----------SHFPDTYTSLVSLNISCLA-- 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG----------GGSCTTCCCCCEEECTTCC--
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH----------HHHhhcCCcCcEEEecccC--
Confidence 789999999999776653224455578999999999886 332111000 0112256788888888775
Q ss_pred ceeecCC-CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 165 TSFCSGV-VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 165 ~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
..+.... ......+|+|++|++.+|..+..+|.....+++|+++.+.
T Consensus 196 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 1111100 0011236888888888886666655544556667776643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=85.65 Aligned_cols=180 Identities=10% Similarity=0.030 Sum_probs=106.7
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccc---cccccccccccccccccceEeccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLES---HVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~---~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+++|+.|+++++.... ++...+..+++|++|+++...+...++....... .+....+. .....++|+.|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N- 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANN- 109 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSS-
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCC-
Confidence 5589999999865444 4444467899999999933345554443222110 11111110 1112367888888877
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCC--C---CCcc-----cccccccc-cccccceeecCcCCCcce
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQG--D---SDVA-----GANLEEEI-LFSKLRYMTMLDLENLTS 166 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~--~---~~~~-----~~~~~~~~-~~p~L~~L~l~~~~~L~~ 166 (225)
.+..+. ...+++|+.|++.++. +..++...... . .+.+ +..+.... .+++|+.|.+.++. ++.
T Consensus 110 ~l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 110 NISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CCCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred cCCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 344442 1357889999998886 44443221110 0 0111 11111222 46788888888775 455
Q ss_pred eecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 167 FCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+... ..+++|++|+++++ +++.+|..+..+++|+.++++++..
T Consensus 184 ~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 184 VKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp EECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC
T ss_pred cccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC
Confidence 5332 24889999999987 6778877777889999999986644
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=92.91 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=51.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccC--Cccc---cccccc---cc-ccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNE--GCLE---SHVGVS---KL-ALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~--~~~~---~~l~~~---~l-~~~~~~l 85 (225)
+|. ..++|++|+++++......|.. +..+++|++|++ +|.....+.... .... ..+... .+ +..+..+
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCC-CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 344 4567888888875543333332 567788888888 665544442211 0000 001110 11 1223445
Q ss_pred cccceEeccCccCccc-cCCchHHhhcccCCEEEEecCc
Q 046905 86 GNLTHLVVFSCKKLMN-LVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
++|++|++++|. +.. .........+++|++|+++++.
T Consensus 97 ~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 97 FHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred cccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence 666666666662 332 1111123456666666666654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-09 Score=84.98 Aligned_cols=177 Identities=15% Similarity=0.020 Sum_probs=92.6
Q ss_pred ccCccEEEEeeCCccccCCHhHH-HhccCCcEEEEeccccceEeccC-Cc--------ccccccc---cccc-ccccccc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLL-EVLHSLETLHLSCTSYKEIFSNE-GC--------LESHVGV---SKLA-LIKISFG 86 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~c~~l~~~~~~~-~~--------~~~~l~~---~~l~-~~~~~l~ 86 (225)
+++|++|+++++......|...+ ..+++|++|+++...+..++..- .. ....+.. ..++ .....++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 66777777776554444554321 55677777777323333331100 00 0000000 0111 2233466
Q ss_pred ccceEeccCccCccccCCchHH--hhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVA--KSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~--~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+|+.|+++++.-......+... ..+++|++|++.++. +..++... ......+++|++|.+.++. +
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~~~~l~~L~~L~Ls~N~-l 240 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC-----------SALAAARVQLQGLDLSHNS-L 240 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH-----------HHHHHTTCCCSEEECTTSC-C
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH-----------HHHHhcCCCCCEEECCCCc-C
Confidence 6777777666422211001112 456677777776664 33221100 0111245889999998774 3
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+...... ....+++|++|+++++ +++.+|.... ++|++++++++..
T Consensus 241 ~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 241 RDAAGAP--SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CSSCCCS--CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCC
T ss_pred Ccccchh--hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCC
Confidence 3322111 1234689999999998 5778887654 8999999987655
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-08 Score=93.59 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=18.5
Q ss_pred CccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 33 DVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 33 ~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
..+..+|. ..++|++|+++...+..+.
T Consensus 14 ~~L~~vP~----lp~~l~~LdLs~N~i~~i~ 40 (844)
T 3j0a_A 14 CNLTQVPQ----VLNTTERLLLSFNYIRTVT 40 (844)
T ss_dssp CCSSCCCS----SCTTCCEEEEESCCCCEEC
T ss_pred CCCCCCCC----CCCCcCEEECCCCcCCccC
Confidence 34566775 3689999999445566664
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=82.47 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.2
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEI 62 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~ 62 (225)
+.+++|++|+++++.. ..+|. +..+++|++|+++...+..+
T Consensus 39 ~~l~~L~~L~Ls~n~l-~~~~~--l~~l~~L~~L~Ls~n~l~~~ 79 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI-TDMTG--IEKLTGLTKLICTSNNITTL 79 (457)
T ss_dssp HHHTTCCEEECCSSCC-CCCTT--GGGCTTCSEEECCSSCCSCC
T ss_pred hHcCCCCEEEccCCCc-ccChh--hcccCCCCEEEccCCcCCeE
Confidence 4588999999987653 34553 67889999999933345544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-08 Score=77.77 Aligned_cols=170 Identities=16% Similarity=0.120 Sum_probs=101.3
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---cccccccc--ccccccccccceE
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGVSKL--ALIKISFGNLTHL 91 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~~~l--~~~~~~l~~L~~L 91 (225)
..+++++.+++.+.. +..+|... .+++++|+++-..+..+.... .... ..+....+ .+....+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCCC-CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 347788999888644 45666542 478999999334455554311 1000 00111000 0111345666666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
+++++ .++.+ +.....+++|+.|+++++. +..++. .....+++|++|.+.++ +++.+..+.
T Consensus 83 ~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~ 143 (290)
T 1p9a_G 83 DLSHN-QLQSL--PLLGQTLPALTVLDVSFNR-LTSLPL--------------GALRGLGELQELYLKGN-ELKTLPPGL 143 (290)
T ss_dssp ECCSS-CCSSC--CCCTTTCTTCCEEECCSSC-CCCCCS--------------STTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred ECCCC-cCCcC--chhhccCCCCCEEECCCCc-CcccCH--------------HHHcCCCCCCEEECCCC-CCCccChhh
Confidence 66665 34433 2334556666666666653 433321 22346788999998876 455555432
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
...+++|+.|++.++ +++.+|.+. ..+++|+.+++.++..
T Consensus 144 ---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 144 ---LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ---TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcC
Confidence 235789999999987 688888754 5689999999986654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=84.12 Aligned_cols=142 Identities=14% Similarity=0.045 Sum_probs=98.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
+.+++|++|+++++.. ..+| ++.+++|++|++ ++ .+..++ ...+++|++|+++++
T Consensus 61 ~~l~~L~~L~Ls~n~l-~~~~---~~~l~~L~~L~Ls~N-~l~~~~------------------~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNI-TTLD---LSQNTNLTYLACDSN-KLTNLD------------------VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp GGCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSS-CCSCCC------------------CTTCTTCCEEECCSS-
T ss_pred cccCCCCEEEccCCcC-CeEc---cccCCCCCEEECcCC-CCceee------------------cCCCCcCCEEECCCC-
Confidence 4577888888887543 3344 456788888888 43 344331 123778888888877
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcccee
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFK 177 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 177 (225)
.++.+ + ...+++|+.|++.++. +..+ ....+++|++|.+.++..+..+..+ .
T Consensus 117 ~l~~l--~--~~~l~~L~~L~l~~N~-l~~l-----------------~l~~l~~L~~L~l~~n~~~~~~~~~------~ 168 (457)
T 3bz5_A 117 KLTKL--D--VSQNPLLTYLNCARNT-LTEI-----------------DVSHNTQLTELDCHLNKKITKLDVT------P 168 (457)
T ss_dssp CCSCC--C--CTTCTTCCEEECTTSC-CSCC-----------------CCTTCTTCCEEECTTCSCCCCCCCT------T
T ss_pred cCCee--c--CCCCCcCCEEECCCCc-ccee-----------------ccccCCcCCEEECCCCCcccccccc------c
Confidence 45554 1 4667888888887774 3332 1345788999999999877776443 4
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|++|++.++ +++.+| ...+++|+.+++..+..
T Consensus 169 l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 169 QTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCC
T ss_pred CCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcC
Confidence 899999999998 677777 56789999999986543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.2e-08 Score=76.02 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=48.9
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|+++++ .+..+. +.....+++|+.|+++++. +..++. .....+++|+.|.+.+. .+
T Consensus 55 l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~--------------~~f~~l~~L~~L~L~~N-~l 116 (220)
T 2v9t_B 55 YKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK-ITELPK--------------SLFEGLFSLQLLLLNAN-KI 116 (220)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CC
T ss_pred CCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc-CCccCH--------------hHccCCCCCCEEECCCC-CC
Confidence 455555555555 233332 2233455555555555543 333321 01123455555555544 22
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~ 213 (225)
+.+.... ...+++|++|++.++ +++.++.. +..+++|+.+++.++
T Consensus 117 ~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 117 NCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 2222211 123556666666554 34444432 344556666666543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=81.66 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=106.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|...+.+++.+.+.++.. ..++. +..+++|++|++ +| .+.+++. ...+++|+.|+++
T Consensus 13 ~pd~~l~~l~~l~l~~~~i-~~~~~--~~~l~~L~~L~l~~n-~i~~l~~-----------------l~~l~~L~~L~L~ 71 (263)
T 1xeu_A 13 FPDPGLANAVKQNLGKQSV-TDLVS--QKELSGVQNFNGDNS-NIQSLAG-----------------MQFFTNLKELHLS 71 (263)
T ss_dssp CCSHHHHHHHHHHHTCSCT-TSEEC--HHHHTTCSEEECTTS-CCCCCTT-----------------GGGCTTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCc-ccccc--hhhcCcCcEEECcCC-CcccchH-----------------HhhCCCCCEEECC
Confidence 4555677777777776443 33332 578999999999 55 4555431 2348999999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. . ...+++|+.|+++++. +..++. ... ++|++|.+.++ .++.+..
T Consensus 72 ~N-~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~----------------~~~-~~L~~L~L~~N-~l~~~~~----- 123 (263)
T 1xeu_A 72 HN-QISDLS--P-LKDLTKLEELSVNRNR-LKNLNG----------------IPS-ACLSRLFLDNN-ELRDTDS----- 123 (263)
T ss_dssp SS-CCCCCG--G-GTTCSSCCEEECCSSC-CSCCTT----------------CCC-SSCCEEECCSS-CCSBSGG-----
T ss_pred CC-ccCCCh--h-hccCCCCCEEECCCCc-cCCcCc----------------ccc-CcccEEEccCC-ccCCChh-----
Confidence 98 566653 2 6789999999999985 555431 112 89999999887 4544432
Q ss_pred ceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+++|++|+++++ +++.+| .+..+++|+.+++.++..
T Consensus 124 l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 124 LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSCC
T ss_pred hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCcC
Confidence 245899999999997 577776 456789999999987654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-08 Score=87.62 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=23.2
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
+|....+++++|+++++. +..++...+..+++|++|++
T Consensus 19 ip~~~~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 56 (680)
T 1ziw_A 19 VPDDLPTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDV 56 (680)
T ss_dssp CCSCSCTTCSEEECCSSC-CCCCCGGGGGGGTTCSEEEC
T ss_pred cccccCCCCcEEECCCCC-CCCcCHHHHhCCCcCcEEEC
Confidence 444444677777777654 33344444566777777777
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-09 Score=92.90 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=51.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccce--Eecc----CCcccccccccc--------ccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKE--IFSN----EGCLESHVGVSK--------LALIKIS 84 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~--~~~~----~~~~~~~l~~~~--------l~~~~~~ 84 (225)
.+++|++|+++++......+..+...+++|++|++ +|..+.. +... .......+.... +......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47789999998865333333333346889999998 7754432 1100 000000011000 1111224
Q ss_pred ccccceEeccCcc-CccccCCchHHhhcccCCEEEEecCc
Q 046905 85 FGNLTHLVVFSCK-KLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 85 l~~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+++|+.|++++|. .+..-........+++|++|++.+|.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 5677777777775 12111111223346777777777763
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=72.63 Aligned_cols=141 Identities=21% Similarity=0.200 Sum_probs=97.6
Q ss_pred cccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccC
Q 046905 35 ATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERL 114 (225)
Q Consensus 35 ~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 114 (225)
...+|.. ..++|++|+++...+..++. .....+++|+.|++.++ .++.+. +.....+++|
T Consensus 19 l~~~p~~---~~~~l~~L~l~~n~l~~~~~---------------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L 78 (208)
T 2o6s_A 19 RTSVPTG---IPAQTTYLDLETNSLKSLPN---------------GVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSL 78 (208)
T ss_dssp CSSCCSC---CCTTCSEEECCSSCCCCCCT---------------TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred ccCCCCC---CCCCCcEEEcCCCccCcCCh---------------hhhcccccCcEEECCCC-ccCccC-hhhcCCCCCc
Confidence 3455543 35789999993334554432 12335889999999997 566552 3345679999
Q ss_pred CEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 115 VTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 115 ~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
++|++.++. +..++. .....+++|++|.+.+. .++.+.... ...+++|++|++.++ +++.
T Consensus 79 ~~L~Ls~n~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~ 138 (208)
T 2o6s_A 79 TYLNLSTNQ-LQSLPN--------------GVFDKLTQLKELALNTN-QLQSLPDGV---FDKLTQLKDLRLYQN-QLKS 138 (208)
T ss_dssp CEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSC
T ss_pred CEEECCCCc-CCccCH--------------hHhcCccCCCEEEcCCC-cCcccCHhH---hccCCcCCEEECCCC-ccce
Confidence 999999985 555432 12346789999999876 455554431 245899999999997 6777
Q ss_pred ecCC-CCCCCCeeEEEecCCce
Q 046905 195 FTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 195 lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+|.. +..+++|+.+++.++.+
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred eCHHHhccCCCccEEEecCCCe
Confidence 7765 46789999999987643
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=84.15 Aligned_cols=165 Identities=17% Similarity=0.142 Sum_probs=104.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHH-hccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLE-VLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
+|.....+++.|+++++.. ..++...+. .+++|++|+++-..+..++.. .+..+++|+.|+++
T Consensus 33 iP~~~~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 33 VPQSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---------------AFVPVPNLRYLDLS 96 (361)
T ss_dssp CCSSCCTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cCccCCCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChh---------------hccCCCCCCEEECC
Confidence 5555566788999987653 334433334 788999999844456665431 23457899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|+.|++.++. +..+.. .....+++|+.|.+.+. .++.++......
T Consensus 97 ~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 158 (361)
T 2xot_A 97 SN-HLHTLD-EFLFSDLQALEVLLLYNNH-IVVVDR--------------NAFEDMAQLQKLYLSQN-QISRFPVELIKD 158 (361)
T ss_dssp SS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECT--------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC-
T ss_pred CC-cCCcCC-HHHhCCCcCCCEEECCCCc-ccEECH--------------HHhCCcccCCEEECCCC-cCCeeCHHHhcC
Confidence 87 466653 3345678999999999876 444421 23446789999998876 344444321000
Q ss_pred ceeCCCccEEEEeCCCCCceecCC-CCCCCC--eeEEEecCCce
Q 046905 175 TFKFPSLEDLIVTGCCNMKIFTSG-DLITPK--RVDAWYSESAC 215 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~--L~~l~i~~~~~ 215 (225)
...+++|+.|++++. +++.+|.. +..++. ++.+++.++.|
T Consensus 159 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 159 GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ---CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 034889999999986 67777632 234454 46788876543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=72.94 Aligned_cols=138 Identities=15% Similarity=0.234 Sum_probs=96.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|....++|+.|+++++.. ..++...+..+++|++|+++-..+..+.. ..+..+++|++|++++
T Consensus 26 iP~~l~~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---------------~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 26 IPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAP---------------DAFQGLRSLNSLVLYG 89 (220)
T ss_dssp CCSSCCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECT---------------TTTTTCSSCCEEECCS
T ss_pred CCCccCcCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCH---------------HHhhCCcCCCEEECCC
Confidence 4555567999999997654 45555556889999999994445655532 2234578999999999
Q ss_pred ccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccc
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYT 175 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~ 175 (225)
+ .++.+. +.....+++|+.|++.++. +..++. .....+++|++|.+.+.. ++.+..+. .
T Consensus 90 N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~-l~~~~~~~---~ 148 (220)
T 2v9t_B 90 N-KITELP-KSLFEGLFSLQLLLLNANK-INCLRV--------------DAFQDLHNLNLLSLYDNK-LQTIAKGT---F 148 (220)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSSC-CSCCCTTT---T
T ss_pred C-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCH--------------HHcCCCCCCCEEECCCCc-CCEECHHH---H
Confidence 8 566553 3445679999999999985 555432 234467899999998863 44454332 2
Q ss_pred eeCCCccEEEEeCCC
Q 046905 176 FKFPSLEDLIVTGCC 190 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~ 190 (225)
..+++|++|++.+.+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 458899999998764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.6e-08 Score=86.92 Aligned_cols=170 Identities=16% Similarity=0.029 Sum_probs=103.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc-cc-----ccc---ccc-cccccccccc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE-SH-----VGV---SKL-ALIKISFGNL 88 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~-~~-----l~~---~~l-~~~~~~l~~L 88 (225)
.+.+|+.+++..+......+ . +..+++|+.+++ .+...... ....... .. +.. ... +.....+++|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~-~-~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp SCSCCCEEECCSCSEEEECS-C-CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhccccccccccc-c-ccccccccchhhhhccccccc-cccccccccccccccccccccccccccccccchhh
Confidence 35678888877644332222 2 346788888887 44322111 1100000 00 000 011 1223457889
Q ss_pred ceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceee
Q 046905 89 THLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC 168 (225)
Q Consensus 89 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 168 (225)
+.|++.++.....+. +.....+++|+.|++++|. +..++. .....+++|++|.|.+. +++.+.
T Consensus 472 ~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~--------------~~f~~l~~L~~L~Ls~N-~l~~l~ 534 (635)
T 4g8a_A 472 EVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSP--------------TAFNSLSSLQVLNMSHN-NFFSLD 534 (635)
T ss_dssp CEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT--------------TTTTTCTTCCEEECTTS-CCCBCC
T ss_pred hhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcCh--------------HHHcCCCCCCEEECCCC-cCCCCC
Confidence 999999887666543 3455778999999999985 666642 23446789999999887 455554
Q ss_pred cCCCccceeCCCccEEEEeCCCCCceec-CCCCCC-CCeeEEEecCC
Q 046905 169 SGVVDYTFKFPSLEDLIVTGCCNMKIFT-SGDLIT-PKRVDAWYSES 213 (225)
Q Consensus 169 ~~~~~~~~~~p~L~~L~I~~C~~L~~lp-~~~~~~-~~L~~l~i~~~ 213 (225)
... ...+++|++|+++++ +++.++ ..+..+ ++|+.|++.++
T Consensus 535 ~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 535 TFP---YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CGG---GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred hhH---HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 321 245899999999997 566654 445566 68999999843
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-07 Score=79.00 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=71.9
Q ss_pred cccccccceEeccCccCccccC-CchHHhhcccCCEEEEecCccccc-ccccccCCCCCcccccccccccccccceeecC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLV-PSSVAKSLERLVTLRVSGCSAMTQ-VVASCDQGDSDVAGANLEEEILFSKLRYMTML 159 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~-~~~~~~~l~~L~~L~I~~C~~L~~-l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 159 (225)
...+++|+.|++++|. ++.+. .+.....+++|+.|+++++. +.. ++. .....+++|++|.+.
T Consensus 344 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~--------------~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 344 CGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK--------------GDCSWTKSLLSLNMS 407 (520)
T ss_dssp CCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG--------------CSCCCCTTCCEEECC
T ss_pred hccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccccc--------------chhccCccCCEEECc
Confidence 3456677777777763 33321 12334567777777777765 332 321 123356889999988
Q ss_pred cCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 160 DLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 160 ~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++.--..+.... .++|++|++++| +++.+|.....+++|+.+++.++..
T Consensus 408 ~N~l~~~~~~~l------~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 408 SNILTDTIFRCL------PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp SSCCCGGGGGSC------CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCcchhhhh------cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC
Confidence 875333222211 279999999998 7888998777899999999987654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.8e-08 Score=79.39 Aligned_cols=188 Identities=10% Similarity=0.096 Sum_probs=98.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEecc--CCccc---cccccc---cccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSN--EGCLE---SHVGVS---KLALIKISFG 86 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~--~~~~~---~~l~~~---~l~~~~~~l~ 86 (225)
+|...+++|+.|+++++... .++...+..+++|++|++ ++ .+..+... ..... -.+... .++.. .++
T Consensus 48 ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~ 123 (332)
T 2ft3_A 48 VPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPS 123 (332)
T ss_dssp CCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSS--CCT
T ss_pred cCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcc--ccc
Confidence 44445567888888775533 333333567888888888 44 45554221 11110 001111 11111 236
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccc--cccccC-CC---CCccc--ccccccccccccceeec
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQV--VASCDQ-GD---SDVAG--ANLEEEILFSKLRYMTM 158 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l--~~~~~~-~~---~~~~~--~~~~~~~~~p~L~~L~l 158 (225)
+|++|+++++ .++.+. +.....+++|+.|++.++. +... ...... .. ...+. ........+++|++|.+
T Consensus 124 ~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 124 SLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp TCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred cCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence 7888888776 344442 3345678888888888775 3221 110000 00 00000 00011122357777777
Q ss_pred CcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCce
Q 046905 159 LDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESAC 215 (225)
Q Consensus 159 ~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~~ 215 (225)
.++ .++.+... ....+++|++|++.++ +++.++. .+..+++|+++++.++..
T Consensus 201 ~~n-~i~~~~~~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 201 DHN-KIQAIELE---DLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CSS-CCCCCCTT---SSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CCC-cCCccCHH---HhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcC
Confidence 665 23333211 1235789999999987 5666654 456789999999986644
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.7e-08 Score=72.72 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=91.7
Q ss_pred hccCCcEEEE-eccccc--eEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 45 VLHSLETLHL-SCTSYK--EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 45 ~l~~L~~L~l-~c~~l~--~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
..++|++|++ +|. +. .++. ....+++|+.|++.+|. ++.+ .....+++|+.|++++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~----------------~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~ 80 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEG----------------LTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSE 80 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSS----------------CCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEES
T ss_pred CcccCCEEECCCCC-CChhhHHH----------------HHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcC
Confidence 3578999999 664 43 3322 23458999999999995 6655 3456799999999999
Q ss_pred CcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC----
Q 046905 122 CSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS---- 197 (225)
Q Consensus 122 C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~---- 197 (225)
|. +...+. .....+++|++|.+.++ .++.+.... ....+++|++|++.++ .+..+|.
T Consensus 81 N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 141 (168)
T 2ell_A 81 NR-IFGGLD--------------MLAEKLPNLTHLNLSGN-KLKDISTLE--PLKKLECLKSLDLFNC-EVTNLNDYRES 141 (168)
T ss_dssp CC-CCSCCC--------------HHHHHCTTCCEEECBSS-SCCSSGGGG--GGSSCSCCCEEECCSS-GGGTSTTHHHH
T ss_pred Cc-CchHHH--------------HHHhhCCCCCEEeccCC-ccCcchhHH--HHhcCCCCCEEEeeCC-cCcchHHHHHH
Confidence 86 444211 22335899999999988 455543211 2346899999999998 5666665
Q ss_pred CCCCCCCeeEEEecCCc
Q 046905 198 GDLITPKRVDAWYSESA 214 (225)
Q Consensus 198 ~~~~~~~L~~l~i~~~~ 214 (225)
.+..+++|+++++.++.
T Consensus 142 ~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHTTCSSCCEETTEETT
T ss_pred HHHhCccCcEecCCCCC
Confidence 45678999999987543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-07 Score=80.32 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=23.5
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEe
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIF 63 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~ 63 (225)
+|...+++|+.|+++++. +..+|. .+++|++|+++...+..++
T Consensus 55 lp~~l~~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp 97 (622)
T 3g06_A 55 LPDCLPAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLP 97 (622)
T ss_dssp CCSCCCTTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCC
T ss_pred cChhhCCCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCC
Confidence 344344677777777654 334444 3577777777222344443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.5e-07 Score=80.01 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=84.3
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCC-cccccccc---cccccccccccccceE
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEG-CLESHVGV---SKLALIKISFGNLTHL 91 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~-~~~~~l~~---~~l~~~~~~l~~L~~L 91 (225)
+|...+++|+.|+++++.. ..+| ..+++|++|+++...+..++.... .....+.. ..++. .+++|+.|
T Consensus 74 lp~~l~~~L~~L~Ls~N~l-~~ip----~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CCSCCCTTCSEEECCSSCC-SCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred cCHhHcCCCCEEECcCCCC-cccc----cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC---cCccccEE
Confidence 4444456677777766442 3455 235677777772224444433110 00000110 11111 35556666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
+++++ .++.+ +. .+++|+.|+++++. +..++ . ..++|+.|.+.++ +++.++. .
T Consensus 146 ~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~-L~~lp----------------~--l~~~L~~L~Ls~N-~L~~lp~-~ 198 (571)
T 3cvr_A 146 NADNN-QLTML--PE---LPTSLEVLSVRNNQ-LTFLP----------------E--LPESLEALDVSTN-LLESLPA-V 198 (571)
T ss_dssp ECCSS-CCSCC--CC---CCTTCCEEECCSSC-CSCCC----------------C--CCTTCCEEECCSS-CCSSCCC-C
T ss_pred eCCCC-ccCcC--CC---cCCCcCEEECCCCC-CCCcc----------------h--hhCCCCEEECcCC-CCCchhh-H
Confidence 66655 24433 11 34566666666553 33332 1 1178888888776 4554443 2
Q ss_pred CccceeCCCc-------cEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSL-------EDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L-------~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.++| +.|+++++ +++.+|.....+++|+.|++.++.+
T Consensus 199 ------~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 199 ------PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ------HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 1255 99999887 7788888777789999999986644
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-08 Score=73.55 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=63.8
Q ss_pred cccCccEEEEeeCCcc-ccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 20 LFGRLRRLEVVRDDVA-TGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
.+++|+.|+++++... ..+|.. +..+++|++|++ +| .+..+ . ....+++|+.|+++++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~----------------~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-A----------------NLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-T----------------TCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-h----------------hhhcCCCCCEEECCCCc
Confidence 3567888888876543 245542 466788888888 44 44443 1 12236788888888773
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
+... .+.....+++|+.|+++++. +..++.. .....+++|++|.+.++
T Consensus 76 -i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~-------------~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 76 -VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTI-------------EPLKKLENLKSLDLFNC 123 (149)
T ss_dssp -CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHH-------------GGGGGCTTCCEEECTTC
T ss_pred -ccch-HHHHhhhCCCCCEEECCCCc-CCChHHH-------------HHHhhCCCCCEEeCcCC
Confidence 4442 14455567888888887775 4433210 12335566666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=79.11 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=27.0
Q ss_pred CCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+++|+.|++++| +++.+|..+..+++|+.+++.++.+
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 567788887776 6667777667778888888876543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=88.45 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=21.9
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
.+++|++|+++++..........+..+++|++|++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 47788999998765222222223456777777776
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-07 Score=68.74 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=97.6
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|......++.|+++++......+...+..+++|++|+++...+..++.. .+..+++|+.|+++
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------------AFEGASGVNEILLT 89 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------------TTTTCTTCCEEECC
T ss_pred cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------------HhCCCCCCCEEECC
Confidence 356566678899999986644443444457899999999944456666431 23458899999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCcc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDY 174 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 174 (225)
++ .++.+. +.....+++|++|+++++. +..++. .....+++|+.|.+.+. +++.+....
T Consensus 90 ~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~--- 148 (220)
T 2v70_A 90 SN-RLENVQ-HKMFKGLESLKTLMLRSNR-ITCVGN--------------DSFIGLSSVRLLSLYDN-QITTVAPGA--- 148 (220)
T ss_dssp SS-CCCCCC-GGGGTTCSSCCEEECTTSC-CCCBCT--------------TSSTTCTTCSEEECTTS-CCCCBCTTT---
T ss_pred CC-ccCccC-HhHhcCCcCCCEEECCCCc-CCeECH--------------hHcCCCccCCEEECCCC-cCCEECHHH---
Confidence 98 455553 4456789999999999886 555432 23446789999999886 455553322
Q ss_pred ceeCCCccEEEEeCCC
Q 046905 175 TFKFPSLEDLIVTGCC 190 (225)
Q Consensus 175 ~~~~p~L~~L~I~~C~ 190 (225)
...+++|++|++.+.+
T Consensus 149 ~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 149 FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred hcCCCCCCEEEecCcC
Confidence 2458899999998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=79.66 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=62.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccC--Cccc---ccccc---cccccccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNE--GCLE---SHVGV---SKLALIKISFGN 87 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~--~~~~---~~l~~---~~l~~~~~~l~~ 87 (225)
+|...+++|++|+++++.. ..++...+..+++|++|+++...+..+.... +... ..+.. ..++.. .+++
T Consensus 46 ip~~~~~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 46 VPKDLPPRTKALSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp CCTTSCTTCCEEECCSSCC-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCCCCCcCEEECCCCCc-cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 5555557888888887653 3444444677888888888333566553321 1111 01111 122222 5788
Q ss_pred cceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 88 LTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 88 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
|++|+++++. ++.+..+.....+++|++|++.++.
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 8888888884 5554334566788888888888764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-07 Score=72.07 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=79.5
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
.+++|+.|+++++.. ..+|...+..+++|++|+++...+..++.. .+..+++|+.|++.++ ++
T Consensus 62 ~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------------~~~~l~~L~~L~Ls~N-~l 124 (229)
T 3e6j_A 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSA---------------VFDRLVHLKELFMCCN-KL 124 (229)
T ss_dssp TCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSS-CC
T ss_pred CccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChh---------------HhCcchhhCeEeccCC-cc
Confidence 478999999998654 566665567899999999943466655431 1235889999999988 56
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
+.+ +.....+++|+.|++.++. +..++. .....+++|+.|.+.+.|
T Consensus 125 ~~l--p~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 125 TEL--PRGIERLTHLTHLALDQNQ-LKSIPH--------------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSC--CTTGGGCTTCSEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred ccc--CcccccCCCCCEEECCCCc-CCccCH--------------HHHhCCCCCCEEEeeCCC
Confidence 655 4556889999999999874 665542 123457889999987754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-07 Score=78.35 Aligned_cols=126 Identities=11% Similarity=0.127 Sum_probs=79.4
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccccccccccccccccc
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
++++..+..+.+. ..+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. .+..
T Consensus 48 ~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~~~~ 110 (361)
T 2xot_A 48 HNNLSRLRAEWTP-TRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEF---------------LFSD 110 (361)
T ss_dssp SSCCCEECTTSSS-SCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTT---------------TTTT
T ss_pred CCCCCccChhhhh-hcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcCCcCCHH---------------HhCC
Confidence 3445554444443 1478999999997654 445544467899999999944557766441 2334
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
+++|+.|+++++ .+..+. +.....+++|+.|++.++. +..++.... .....+++|+.|.+.+.
T Consensus 111 l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~-----------~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 111 LQALEVLLLYNN-HIVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELI-----------KDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGT-----------C----CTTCCEEECCSS
T ss_pred CcCCCEEECCCC-cccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHh-----------cCcccCCcCCEEECCCC
Confidence 788899999887 355442 3455678889999888874 555542110 01135677888877764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.6e-07 Score=77.78 Aligned_cols=112 Identities=16% Similarity=0.017 Sum_probs=54.7
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccC-CCCCccc--c-cccccccccccceeecCcC
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQ-GDSDVAG--A-NLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~-~~~~~~~--~-~~~~~~~~p~L~~L~l~~~ 161 (225)
++|++|+++++ .++.+ + ....+++|+.|++.+|. +..++..... ...+.++ . .-.....+++|++|.+.++
T Consensus 173 ~~L~~L~L~~n-~l~~l--~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEEL--P-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSS-CCSSC--C-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccccEEECcCC-cCCcC--c-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 46667776666 34443 2 24566667777766664 3332211100 0000000 0 0012335667777777664
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCc
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~ 214 (225)
.++.++. .+++|++|++.+| +++.+|.. +++|++++++++.
T Consensus 248 -~l~~l~~-------~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 248 -LLKTLPD-------LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSENI 288 (454)
T ss_dssp -CCSSCCS-------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred -cCCcccc-------cccccCEEECCCC-cccccCcc---cCcCCEEECcCCc
Confidence 2333321 2467777777776 45555542 3566666666543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6e-08 Score=70.66 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=87.0
Q ss_pred hccCCcEEEE-eccccc--eEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEec
Q 046905 45 VLHSLETLHL-SCTSYK--EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSG 121 (225)
Q Consensus 45 ~l~~L~~L~l-~c~~l~--~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~ 121 (225)
..++|++|++ +|. +. .++. ....+++|+.|++++| .++.+ .....+++|+.|++++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~----------------~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEG----------------LTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSD 73 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCS----------------CCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCS
T ss_pred CCccCeEEEccCCc-CChhHHHH----------------HHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCC
Confidence 3578999999 653 33 3322 2345889999999998 56655 3456789999999998
Q ss_pred Cccccc-ccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC---
Q 046905 122 CSAMTQ-VVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS--- 197 (225)
Q Consensus 122 C~~L~~-l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~--- 197 (225)
+. +.. ++ .....+++|++|.+.++. ++.+.... ....+++|++|++++| .++.+|.
T Consensus 74 n~-i~~~~~---------------~~~~~l~~L~~L~ls~N~-i~~~~~~~--~~~~l~~L~~L~l~~N-~l~~~~~~~~ 133 (149)
T 2je0_A 74 NR-VSGGLE---------------VLAEKCPNLTHLNLSGNK-IKDLSTIE--PLKKLENLKSLDLFNC-EVTNLNDYRE 133 (149)
T ss_dssp SC-CCSCTH---------------HHHHHCTTCCEEECTTSC-CCSHHHHG--GGGGCTTCCEEECTTC-GGGGSTTHHH
T ss_pred Cc-ccchHH---------------HHhhhCCCCCEEECCCCc-CCChHHHH--HHhhCCCCCEEeCcCC-cccchHHHHH
Confidence 86 443 22 223358899999998875 44432101 2346899999999998 5676665
Q ss_pred -CCCCCCCeeEEEec
Q 046905 198 -GDLITPKRVDAWYS 211 (225)
Q Consensus 198 -~~~~~~~L~~l~i~ 211 (225)
....+++|+.+++.
T Consensus 134 ~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 134 NVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEETTB
T ss_pred HHHHHCCCcccccCC
Confidence 34568899988764
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=71.49 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=59.4
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCccccccccccc----ccccceeecCcCC
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEIL----FSKLRYMTMLDLE 162 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~ 162 (225)
+|+.|++++|. +++.... .+..+++|++|++++|..+..-.- ..... .++|++|.|.+|+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL--------------~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL--------------ERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH--------------HHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH--------------HHHHhcccccCCCCEEEcCCCC
Confidence 68888888886 6665432 235788888888888886543110 11111 2578888888888
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCce
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKI 194 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~ 194 (225)
+++.-.... ...+++|++|+|++|++++.
T Consensus 126 ~ITD~Gl~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHH---GGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHH---HhcCCCCCEEECCCCCCCCc
Confidence 877644321 23578899999999988774
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-07 Score=82.40 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=32.3
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC--CCCCCCCeeEEEec
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS--GDLITPKRVDAWYS 211 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~--~~~~~~~L~~l~i~ 211 (225)
.+++|++|+|.+|+ +..-.... ....+++|++|++++|. ++.... -...+|.++...+.
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAA--AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHH--HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred cCcccCeeeccCCC-CcHHHHHH--HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 46778888888887 43211110 11347888888888886 442110 01245655554443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=70.13 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=17.8
Q ss_pred ccceEeccCccCccccCCchHHhhcccCCEEEEecCccc
Q 046905 87 NLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAM 125 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L 125 (225)
+|++|+|++|.++++-.. ..+..+++|++|+|++|+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCC
Confidence 455555555555544321 11234455555555555543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.3e-07 Score=66.47 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=43.4
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCc
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSC 96 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C 96 (225)
|...+++|+.|+++++.. ..++...+..+++|++|+++...+..++.. ....+++|+.|+++++
T Consensus 23 p~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 23 PTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------VFDKLTKLTILYLHEN 86 (177)
T ss_dssp CTTCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCSS
T ss_pred CCCCCCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChh---------------HccCCCccCEEECCCC
Confidence 334445666666665432 334433345566666666622234433221 1123556666666665
Q ss_pred cCccccCCchHHhhcccCCEEEEecC
Q 046905 97 KKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 97 ~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
.++.+. +.....+++|+.|++.++
T Consensus 87 -~l~~~~-~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 87 -KLQSLP-NGVFDKLTQLKELALDTN 110 (177)
T ss_dssp -CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred -CccccC-HHHhhCCcccCEEECcCC
Confidence 344332 222345566666666655
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.8e-07 Score=67.39 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCc
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L 99 (225)
...+|+.|+++++... .++. .....++|++|+++-..+..+.. ...+++|+.|+++++ .+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~-----------------l~~l~~L~~L~Ls~N-~l 76 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDG-----------------FPLLRRLKTLLVNNN-RI 76 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECC-----------------CCCCSSCCEEECCSS-CC
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccc-----------------cccCCCCCEEECCCC-cc
Confidence 4678999999986543 4453 22334499999993335665521 234789999999988 46
Q ss_pred cccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCC
Q 046905 100 MNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 100 ~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p 179 (225)
+.+. +.....+++|+.|+++++. +..++.. .....+++|+.|.+.+++- ..++.........+|
T Consensus 77 ~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~-------------~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 77 CRIG-EGLDQALPDLTELILTNNS-LVELGDL-------------DPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVP 140 (176)
T ss_dssp CEEC-SCHHHHCTTCCEEECCSCC-CCCGGGG-------------GGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCT
T ss_pred cccC-cchhhcCCCCCEEECCCCc-CCcchhh-------------HhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCC
Confidence 6653 3445789999999999885 5554321 1344678888888888753 222211000124578
Q ss_pred CccEEEEeCCCC
Q 046905 180 SLEDLIVTGCCN 191 (225)
Q Consensus 180 ~L~~L~I~~C~~ 191 (225)
+|+.|++.++..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 888888877653
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=65.90 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=75.9
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+.+++|+.|++.++. +..+|. .+..+++|++|+++-..+..+.. ..+..+++|+.|+++
T Consensus 24 ~ip~~~~~~l~~L~L~~n~-i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~---------------~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 24 VLPKGIPRDVTELYLDGNQ-FTLVPK-ELSNYKHLTLIDLSNNRISTLSN---------------QSFSNMTQLLTLILS 86 (193)
T ss_dssp SCCSCCCTTCCEEECCSSC-CCSCCG-GGGGCTTCCEEECCSSCCCCCCT---------------TTTTTCTTCCEEECC
T ss_pred cCCCCCCCCCCEEECCCCc-CchhHH-HhhcccCCCEEECCCCcCCEeCH---------------hHccCCCCCCEEECC
Confidence 3455566789999998754 346664 36788999999984445555432 123447889999998
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
++ .++.+. +.....+++|+.|++.++. +..++. .....+++|+.|.+.+.|
T Consensus 87 ~N-~l~~i~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YN-RLRCIP-PRTFDGLKSLRLLSLHGND-ISVVPE--------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SS-CCCBCC-TTTTTTCTTCCEEECCSSC-CCBCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeC-HHHhCCCCCCCEEECCCCC-CCeeCh--------------hhhhcCccccEEEeCCCC
Confidence 87 466553 3445678899999998875 555432 123356788888877653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=66.94 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=70.4
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|...+.+|+.|+++++......+...+..+++|++|+++-..+..+.. ..+..+++|+.|+++
T Consensus 22 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------------NAFEGASHIQELQLG 86 (192)
T ss_dssp SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---------------TTTTTCTTCCEEECC
T ss_pred cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH---------------hHcCCcccCCEEECC
Confidence 45555556888888887554333332235678888888883334544422 123346788888888
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
++ .++.+. +.....+++|+.|+++++. +..++. .....+++|++|.+.+.+
T Consensus 87 ~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 EN-KIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMP--------------GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SC-CCCEEC-SSSSTTCTTCCEEECCSSC-CCEECT--------------TSSTTCTTCCEEECTTCC
T ss_pred CC-cCCccC-HHHhcCCCCCCEEECCCCc-CCeeCH--------------HHhhcCCCCCEEEeCCCC
Confidence 77 455553 2334567888888888774 444321 223456778888776653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-08 Score=76.27 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred CccEEEEee-CCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 23 RLRRLEVVR-DDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 23 ~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
+|+...+.+ ...+..+|.. +..+++|++|++ ++ .+..++ ....+++|+.|++.+| .++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-----------------~~~~l~~L~~L~l~~n-~l~ 83 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-----------------SLSGMENLRILSLGRN-LIK 83 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-----------------CHHHHTTCCEEEEEEE-EEC
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-----------------ccccCCCCCEEECCCC-Ccc
Confidence 455555554 2233444443 567788888887 44 333332 1223677778887777 355
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS 180 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~ 180 (225)
.+ +.....+++|+.|++.++. +..++ ....+++|++|.+.++. ++.+.... ....+++
T Consensus 84 ~l--~~~~~~~~~L~~L~L~~N~-l~~l~----------------~~~~l~~L~~L~l~~N~-i~~~~~~~--~l~~l~~ 141 (198)
T 1ds9_A 84 KI--ENLDAVADTLEELWISYNQ-IASLS----------------GIEKLVNLRVLYMSNNK-ITNWGEID--KLAALDK 141 (198)
T ss_dssp SC--SSHHHHHHHCSEEEEEEEE-CCCHH----------------HHHHHHHSSEEEESEEE-CCCHHHHH--HHTTTTT
T ss_pred cc--cchhhcCCcCCEEECcCCc-CCcCC----------------ccccCCCCCEEECCCCc-CCchhHHH--HHhcCCC
Confidence 44 3445566778888887773 44432 23356777777776652 22221100 1124677
Q ss_pred ccEEEEeCCCCCceecCC----------CCCCCCeeEEE
Q 046905 181 LEDLIVTGCCNMKIFTSG----------DLITPKRVDAW 209 (225)
Q Consensus 181 L~~L~I~~C~~L~~lp~~----------~~~~~~L~~l~ 209 (225)
|++|++.+++--...|.. ...+++|+.++
T Consensus 142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888888777432222221 34566777665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-06 Score=63.42 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=59.3
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
++|+.|++.++ .++.+........+++|++|+++++. +..++. .....+++|++|.+.+.. ++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~Ls~N~-l~ 91 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------------NAFEGASHIQELQLGENK-IK 91 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------------TTTTTCTTCCEEECCSCC-CC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH--------------hHcCCcccCCEEECCCCc-CC
Confidence 36666666666 34444222234566677777776654 333321 123345666666666542 34
Q ss_pred eeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCCce
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.... ...+++|++|+++++ +++.+ |..+..+++|+++++.++.|
T Consensus 92 ~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 92 EISNKM---FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECSSS---STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccCHHH---hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 443321 124677777777776 44444 44456677777777765433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-06 Score=72.77 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.1
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
++|++|.+.++ .++.++. ...+++|++|++.+| +++.+|.. .++|+++++.++..
T Consensus 173 ~~L~~L~L~~n-~l~~l~~-----~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEELPE-----LQNLPFLTAIYADNN-SLKKLPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp TTCCEEECCSS-CCSSCCC-----CTTCTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSSCC
T ss_pred ccccEEECcCC-cCCcCcc-----ccCCCCCCEEECCCC-cCCcCCCC---cCcccEEECcCCcC
Confidence 46777777765 3443331 135778888888877 45556542 35788888775543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-07 Score=78.27 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=19.4
Q ss_pred eCCCccEEEEeCCCCCce-----ecCCC--CCCCCeeEEEecCCc
Q 046905 177 KFPSLEDLIVTGCCNMKI-----FTSGD--LITPKRVDAWYSESA 214 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~-----lp~~~--~~~~~L~~l~i~~~~ 214 (225)
.+++|++|++++|. ++. +|..+ ...++|+.|++.++.
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 35666666666664 332 23322 225666666666543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.5e-06 Score=62.41 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=15.1
Q ss_pred CCCccEEEEeCCCCCceecCCC-CCCCCeeEEEecC
Q 046905 178 FPSLEDLIVTGCCNMKIFTSGD-LITPKRVDAWYSE 212 (225)
Q Consensus 178 ~p~L~~L~I~~C~~L~~lp~~~-~~~~~L~~l~i~~ 212 (225)
+++|++|++.++ +++.+|... ..+++|+.+++.+
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence 444555555444 344444332 3344455555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.4e-06 Score=63.19 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=77.3
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|++.+. .++.+ +.....+++|+.|+++++. +..++. .....+++|++|.+.+.. +
T Consensus 30 ~~~l~~L~L~~n-~i~~i--p~~~~~l~~L~~L~Ls~N~-i~~i~~--------------~~f~~l~~L~~L~Ls~N~-l 90 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLV--PKELSNYKHLTLIDLSNNR-ISTLSN--------------QSFSNMTQLLTLILSYNR-L 90 (193)
T ss_dssp CTTCCEEECCSS-CCCSC--CGGGGGCTTCCEEECCSSC-CCCCCT--------------TTTTTCTTCCEEECCSSC-C
T ss_pred CCCCCEEECCCC-cCchh--HHHhhcccCCCEEECCCCc-CCEeCH--------------hHccCCCCCCEEECCCCc-c
Confidence 568899999887 45655 3566788999999998875 554432 233467889999888763 5
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCce
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESAC 215 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~~ 215 (225)
+.+.... ...+++|++|++.++ +++.+|.. +..+++|+.+++.++.|
T Consensus 91 ~~i~~~~---f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRT---FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTT---TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHH---hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555432 245789999999986 67778764 46788999999986544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-07 Score=77.33 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=42.1
Q ss_pred ccccccceeecCcCCCccee-----ecCCCccceeCCCccEEEEeCCCCCce-----ecCCC-CCCCCeeEEEecCCce
Q 046905 148 ILFSKLRYMTMLDLENLTSF-----CSGVVDYTFKFPSLEDLIVTGCCNMKI-----FTSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 148 ~~~p~L~~L~l~~~~~L~~~-----~~~~~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~-~~~~~L~~l~i~~~~~ 215 (225)
..+++|++|.+.++. +... .... ....+++|++|++++|. ++. +|... .++++|++|++.++..
T Consensus 241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l--~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 241 KSWPNLRELGLNDCL-LSARGAAAVVDAF--SKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp GGCTTCCEEECTTCC-CCHHHHHHHHHHH--HTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ccCCCcCEEECCCCC-CchhhHHHHHHHH--hhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 456778888887774 2221 1100 00127999999999984 554 77655 4579999999987654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=79.35 Aligned_cols=109 Identities=16% Similarity=-0.007 Sum_probs=80.9
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...+++|+.|+++++. +..+ +.....+++|+.|++.++. +..++ .....+++|+.|.|.++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~lp---------------~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNI--SANIFKYDFLTRLYLNGNS-LTELP---------------AEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCC--CGGGGGCCSCSCCBCTTSC-CSCCC---------------GGGGGGTTCCEEECTTS
T ss_pred hccCCCCcEEECCCCC-CCCC--ChhhcCCCCCCEEEeeCCc-CcccC---------------hhhhCCCCCCEEeCcCC
Confidence 3457889999999885 5544 3445688999999998885 55554 23457889999999887
Q ss_pred CCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 162 ENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 162 ~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
. |+.++.. ...+++|++|++.++ .++.+|..+..+++|+.|+++++.+
T Consensus 281 ~-l~~lp~~----~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 281 R-LTSLPAE----LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp C-CSSCCSS----GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred c-CCccChh----hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 5 5555443 256889999999988 6788898888889999999986644
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=63.00 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=70.4
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
+++|+.|+++++ .++.+ .....+++|+.|+++++. +..++. .....+++|++|.+.++. +
T Consensus 41 ~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~--------------~~~~~l~~L~~L~L~~N~-i 100 (176)
T 1a9n_A 41 LDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGE--------------GLDQALPDLTELILTNNS-L 100 (176)
T ss_dssp TTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECS--------------CHHHHCTTCCEEECCSCC-C
T ss_pred CCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCc--------------chhhcCCCCCEEECCCCc-C
Confidence 348888888887 45554 234578888888888875 554431 112467889999888763 3
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC----CCCCCCeeEEEecCC
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG----DLITPKRVDAWYSES 213 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~----~~~~~~L~~l~i~~~ 213 (225)
+.++... ....+++|++|++.+++ +..+|.. ...+++|+.+++.++
T Consensus 101 ~~~~~~~--~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 101 VELGDLD--PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCGGGGG--GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcchhhH--hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4443210 12458899999999874 5566653 457788888887644
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-06 Score=73.07 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=80.0
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---ccccc---cccccccccccccceEeccCc
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVGV---SKLALIKISFGNLTHLVVFSC 96 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~~---~~l~~~~~~l~~L~~L~i~~C 96 (225)
+|+.|+++++. +..+|... +++|++|+++...+..++ ..... ..+.. ..++. . ..+|+.|+++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l--~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-L--PASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-C--CTTCCEEECCSS
T ss_pred CccEEEeCCCC-CCccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-h--hcCCCEEECCCC
Confidence 88999998765 34477643 588999999444566554 11100 00100 01111 1 115555555554
Q ss_pred cCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccce
Q 046905 97 KKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTF 176 (225)
Q Consensus 97 ~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~ 176 (225)
.++.+ +. .+++|+.|+++++. +..++ . .+++|+.|.+.++. ++.++. .
T Consensus 131 -~l~~l--p~---~l~~L~~L~Ls~N~-l~~lp----------------~--~l~~L~~L~Ls~N~-L~~lp~-l----- 178 (571)
T 3cvr_A 131 -QLTML--PE---LPALLEYINADNNQ-LTMLP----------------E--LPTSLEVLSVRNNQ-LTFLPE-L----- 178 (571)
T ss_dssp -CCSCC--CC---CCTTCCEEECCSSC-CSCCC----------------C--CCTTCCEEECCSSC-CSCCCC-C-----
T ss_pred -cCCCC--CC---cCccccEEeCCCCc-cCcCC----------------C--cCCCcCEEECCCCC-CCCcch-h-----
Confidence 23332 11 34555555555543 32221 1 45778888887763 444433 2
Q ss_pred eCCCccEEEEeCCCCCceecCCCCCCCCe-------eEEEecCCce
Q 046905 177 KFPSLEDLIVTGCCNMKIFTSGDLITPKR-------VDAWYSESAC 215 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~lp~~~~~~~~L-------~~l~i~~~~~ 215 (225)
.++|+.|+++++ +++.+|. +.. +| +.|++.++..
T Consensus 179 -~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 179 -PESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -CTTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCC
T ss_pred -hCCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 178999999887 6777876 332 66 8888876544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-06 Score=78.12 Aligned_cols=109 Identities=22% Similarity=0.112 Sum_probs=71.2
Q ss_pred HHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 43 LEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 43 ~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
+..+++|++|+++...+..++. ....+++|++|+++++ .++.+ +..+..+++|+.|+++++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~----------------~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA----------------NIFKYDFLTRLYLNGN-SLTEL--PAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG----------------GGGGCCSCSCCBCTTS-CCSCC--CGGGGGGTTCCEEECTTS
T ss_pred hccCCCCcEEECCCCCCCCCCh----------------hhcCCCCCCEEEeeCC-cCccc--ChhhhCCCCCCEEeCcCC
Confidence 4556777777772223333322 2335788889998888 56544 455678888999999888
Q ss_pred cccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCC
Q 046905 123 SAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCN 191 (225)
Q Consensus 123 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~ 191 (225)
. +..++ .....+++|++|.|.++ .++.++... ..+++|++|++.+++-
T Consensus 281 ~-l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~lp~~~----~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 281 R-LTSLP---------------AELGSCFQLKYFYFFDN-MVTTLPWEF----GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp C-CSSCC---------------SSGGGGTTCSEEECCSS-CCCCCCSST----TSCTTCCCEECTTSCC
T ss_pred c-CCccC---------------hhhcCCCCCCEEECCCC-CCCccChhh----hcCCCccEEeCCCCcc
Confidence 6 55554 23456788888888877 456565432 4578888888888753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=5.1e-06 Score=73.76 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=75.8
Q ss_pred cCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccc
Q 046905 47 HSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMT 126 (225)
Q Consensus 47 ~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~ 126 (225)
..|++|+++...+..++. ...+++|+.|+++++ .++.+ |..+..+++|+.|+++++. +.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-----------------~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-----------------LEQLLLVTHLDLSHN-RLRAL--PPALAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-----------------GGGGTTCCEEECCSS-CCCCC--CGGGGGCTTCCEEECCSSC-CC
T ss_pred cCceEEEecCCCCCCCcC-----------------ccccccCcEeecCcc-ccccc--chhhhcCCCCCEEECCCCC-CC
Confidence 367788883335554432 234778888888887 46644 4566778888888888774 54
Q ss_pred cccccccCCCCCcccccccccccccccceeecCcCCCcceee-cCCCccceeCCCccEEEEeCCCCCceecCCC----CC
Q 046905 127 QVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFC-SGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD----LI 201 (225)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~-~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~----~~ 201 (225)
.++ ....+++|+.|.+.++ +++.+. .. ....+++|+.|+++++ .++.+|... ..
T Consensus 500 ~lp----------------~l~~l~~L~~L~Ls~N-~l~~~~~p~---~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 500 NVD----------------GVANLPRLQELLLCNN-RLQQSAAIQ---PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEM 558 (567)
T ss_dssp CCG----------------GGTTCSSCCEEECCSS-CCCSSSTTG---GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHH
T ss_pred CCc----------------ccCCCCCCcEEECCCC-CCCCCCCcH---HHhcCCCCCEEEecCC-cCCCCccHHHHHHHH
Confidence 443 2345778888888775 344442 11 2245788888888886 456555433 23
Q ss_pred CCCeeEEE
Q 046905 202 TPKRVDAW 209 (225)
Q Consensus 202 ~~~L~~l~ 209 (225)
+|+|+.|.
T Consensus 559 lp~L~~L~ 566 (567)
T 1dce_A 559 LPSVSSIL 566 (567)
T ss_dssp CTTCSEEE
T ss_pred CcccCccC
Confidence 67777764
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=67.15 Aligned_cols=166 Identities=15% Similarity=0.030 Sum_probs=79.3
Q ss_pred cccCccEEEEeeCCc-------cc-cCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccce
Q 046905 20 LFGRLRRLEVVRDDV-------AT-GFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTH 90 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~-------~~-~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~ 90 (225)
.|++|+.|.|.+... .. .-...++..+|+|+.|.| +|..+. +. + ...++|++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~----------------~--~~~~~L~~ 197 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG----------------K--KPRPNLKS 197 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC----------------S--CBCTTCSE
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec----------------c--ccCCCCcE
Confidence 477888888854211 00 012233567788888888 652221 11 1 12667888
Q ss_pred EeccCccCccccCCchHH-hhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeec
Q 046905 91 LVVFSCKKLMNLVPSSVA-KSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCS 169 (225)
Q Consensus 91 L~i~~C~~L~~l~~~~~~-~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~ 169 (225)
|+|..|. +..-...... ..+|+|++|.+..+.+.. ....... ... .......||+|++|.+.+|.--.....
T Consensus 198 L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~--~~~~~~~--~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 198 LEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDY--GFDGDMN--VFR--PLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp EEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGG--TCCSCGG--GTG--GGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred EEEecCC-CChHHHHHHHHccCCCCcEEEEecccccc--ccchhHH--HHH--HHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 8887663 3221101111 257888888876432210 0000000 000 001113477888888776643211100
Q ss_pred CCCccceeCCCccEEEEeCCCCCce-----ecCCCCCCCCeeEEEecCC
Q 046905 170 GVVDYTFKFPSLEDLIVTGCCNMKI-----FTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 170 ~~~~~~~~~p~L~~L~I~~C~~L~~-----lp~~~~~~~~L~~l~i~~~ 213 (225)
.. .....+|.|++|+++.+ .+.. ++.++.++++|+.|++..+
T Consensus 271 ~l-a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 271 MF-LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HH-HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HH-HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 00 00023677777777554 4543 3433345567777777544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.3e-06 Score=69.26 Aligned_cols=180 Identities=11% Similarity=-0.040 Sum_probs=90.7
Q ss_pred cCccEEEEeeCCccccCCHhH---HHhc-cCCcEEEE-eccccceEeccC----------Cccccccccccc--------
Q 046905 22 GRLRRLEVVRDDVATGFPVGL---LEVL-HSLETLHL-SCTSYKEIFSNE----------GCLESHVGVSKL-------- 78 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~---~~~l-~~L~~L~l-~c~~l~~~~~~~----------~~~~~~l~~~~l-------- 78 (225)
++|++|+++++......+..+ +..+ ++|++|++ +|. +....... ......+....+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 899999999876443333322 2223 79999999 553 44332100 000000110000
Q ss_pred cccccccc-ccceEeccCccCccccCCc---hHHhhc-ccCCEEEEecCcccccccccccCCCCCccccccccccc-ccc
Q 046905 79 ALIKISFG-NLTHLVVFSCKKLMNLVPS---SVAKSL-ERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEIL-FSK 152 (225)
Q Consensus 79 ~~~~~~l~-~L~~L~i~~C~~L~~l~~~---~~~~~l-~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~-~p~ 152 (225)
......++ +|+.|++++| .+...... .....+ ++|++|++++|. +....... -...... .++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~----------l~~~l~~~~~~ 226 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE----------LAYIFSSIPNH 226 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH----------HHHHHHHSCTT
T ss_pred HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH----------HHHHHhcCCCC
Confidence 01111233 6777777666 34433211 112233 367777776664 22210000 0011122 358
Q ss_pred cceeecCcCCCcceeecCC-CccceeCCCccEEEEeCCC-------CCceecCCCCCCCCeeEEEecCCce
Q 046905 153 LRYMTMLDLENLTSFCSGV-VDYTFKFPSLEDLIVTGCC-------NMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 153 L~~L~l~~~~~L~~~~~~~-~~~~~~~p~L~~L~I~~C~-------~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
|++|.+.++. +....... ......+++|++|++++|. .+..++.....+++|+.++++++..
T Consensus 227 L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 9999998863 33221100 0011347899999999985 2444555666788899999886654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=70.51 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=85.8
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.+|+.|+++++. +..+|. ++.+++|++|+++...+..++. ....+++|+.|+++++ .++.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~----------------~~~~l~~L~~L~Ls~N-~l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPP----------------ALAALRCLEVLQASDN-ALEN 500 (567)
T ss_dssp TTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCG----------------GGGGCTTCCEEECCSS-CCCC
T ss_pred cCceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccch----------------hhhcCCCCCEEECCCC-CCCC
Confidence 368999998764 445675 6889999999994345555543 2345889999999988 5665
Q ss_pred cCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCc
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSL 181 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L 181 (225)
+ + .+..+++|+.|+++++. +..++. +.....+++|+.|.+.+.+ ++.++.........+|+|
T Consensus 501 l--p-~l~~l~~L~~L~Ls~N~-l~~~~~-------------p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 501 V--D-GVANLPRLQELLLCNNR-LQQSAA-------------IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp C--G-GGTTCSSCCEEECCSSC-CCSSST-------------TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTC
T ss_pred C--c-ccCCCCCCcEEECCCCC-CCCCCC-------------cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCccc
Confidence 4 3 56789999999998875 555420 1345578899999998874 333332221233458888
Q ss_pred cEEE
Q 046905 182 EDLI 185 (225)
Q Consensus 182 ~~L~ 185 (225)
+.|+
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 8875
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.6e-05 Score=62.11 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=28.6
Q ss_pred ccccceeecCcCCCcceeecCCCccceeCCCcc-EEEEeCCCCCceecC-CCCCCCCeeEEEec
Q 046905 150 FSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLE-DLIVTGCCNMKIFTS-GDLITPKRVDAWYS 211 (225)
Q Consensus 150 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~-~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~ 211 (225)
+++|+.+.+.+ +++.+..+. +..+++|+ .+.+.+ +++.++. .+...++|+.|.+.
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCCCEEECCc--ccceehHHH---hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 34555555544 244444332 23455666 666655 5555543 23455666666664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-07 Score=76.89 Aligned_cols=116 Identities=13% Similarity=0.014 Sum_probs=61.0
Q ss_pred ccceEeccCccCccccC---CchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCC
Q 046905 87 NLTHLVVFSCKKLMNLV---PSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 87 ~L~~L~i~~C~~L~~l~---~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 163 (225)
+|++|++++|. +.... .+.....+++|++|++++|. +.......-. ..-....++|++|.+.+| .
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~---------~~l~~~~~~L~~L~L~~n-~ 153 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLC---------EGLLDPQCRLEKLQLEYC-S 153 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHH---------HHHTSTTCCCCEEECTTS-C
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHH---------HHHhcCCCcceEEECCCC-C
Confidence 67888887773 44211 12334567778888887775 3221100000 000112457888888887 2
Q ss_pred cceeecCC-CccceeCCCccEEEEeCCCCCcee-----cCCC-CCCCCeeEEEecCCce
Q 046905 164 LTSFCSGV-VDYTFKFPSLEDLIVTGCCNMKIF-----TSGD-LITPKRVDAWYSESAC 215 (225)
Q Consensus 164 L~~~~~~~-~~~~~~~p~L~~L~I~~C~~L~~l-----p~~~-~~~~~L~~l~i~~~~~ 215 (225)
++...... ......+++|++|++++|. +... .... ...++|+.+++.++..
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 32211000 0011246899999999886 4421 1111 1356899999987644
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-07 Score=75.80 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred CccEEEEeeCCccc----cCCHhHHHhccCCcEEEE-ecc
Q 046905 23 RLRRLEVVRDDVAT----GFPVGLLEVLHSLETLHL-SCT 57 (225)
Q Consensus 23 ~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l-~c~ 57 (225)
+|++|+++++.... .++. .+..+++|++|++ ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSB
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCc
Confidence 68888887765332 1222 2456778888888 543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=59.15 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=52.5
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..++|+.|+++++... .++...+..+++|++|+++-..+..++.. .+..+++|+.|+++
T Consensus 26 ~iP~~~~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~---------------~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 26 SVPAGIPTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTG---------------VFDKLTQLTQLDLN 89 (174)
T ss_dssp SCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------TTTTCTTCCEEECC
T ss_pred ccCCCcCCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChh---------------HhCCcchhhEEECC
Confidence 345555567777777765433 33333356677777777733355544331 12246777777777
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
++ .++.+. +.....+++|+.|++.+.+
T Consensus 90 ~N-~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DN-HLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred CC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence 66 455442 2335567777777777654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-06 Score=70.70 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=35.9
Q ss_pred ccceeecCcCCCcceeecCC-CccceeC-CCccEEEEeCCCCCce-----ecCCCCC-CCCeeEEEecCCce
Q 046905 152 KLRYMTMLDLENLTSFCSGV-VDYTFKF-PSLEDLIVTGCCNMKI-----FTSGDLI-TPKRVDAWYSESAC 215 (225)
Q Consensus 152 ~L~~L~l~~~~~L~~~~~~~-~~~~~~~-p~L~~L~I~~C~~L~~-----lp~~~~~-~~~L~~l~i~~~~~ 215 (225)
+|++|.+.++. ++...... ......+ ++|++|++++|. +.. ++..... .++|+.++++++..
T Consensus 168 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 168 NVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred cccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 78888888772 32221100 0001124 489999998884 554 4443333 35899999986644
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.9e-05 Score=61.21 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=65.0
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccc-eeecCcCCC
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLR-YMTMLDLEN 163 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~ 163 (225)
+++|+.|++.++ +++.+. ......+++|++|.+.+ +++.|.. .....+++|+ .+.+.+ +
T Consensus 225 ~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~--ni~~I~~--------------~aF~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPH--NLKTIGQ--------------RVFSNCGRLAGTLELPA--S 284 (329)
T ss_dssp CTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCT--TCCEECT--------------TTTTTCTTCCEEEEECT--T
T ss_pred cCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCc--ccceehH--------------HHhhCChhccEEEEEcc--c
Confidence 456666666654 244442 23345566677766655 2444431 1233556788 888877 7
Q ss_pred cceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEe
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWY 210 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i 210 (225)
++.+..+. +..+++|+.+.+.+ .+++.++.. +...++|+.|+.
T Consensus 285 l~~I~~~a---F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGA---FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTT---TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhh---hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 88887653 45688999999865 478888763 467889998864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-06 Score=63.97 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=75.6
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|+.|+++++.. ..+| .+..+++|++|++ ++ .+..++. ....+++|+.|+++++
T Consensus 45 ~~l~~L~~L~ls~n~l-~~l~--~~~~l~~L~~L~l~~n-~l~~l~~----------------~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 45 STLKACKHLALSTNNI-EKIS--SLSGMENLRILSLGRN-LIKKIEN----------------LDAVADTLEELWISYN- 103 (198)
T ss_dssp HHTTTCSEEECSEEEE-SCCC--CHHHHTTCCEEEEEEE-EECSCSS----------------HHHHHHHCSEEEEEEE-
T ss_pred hcCCCCCEEECCCCCC-cccc--ccccCCCCCEEECCCC-Ccccccc----------------hhhcCCcCCEEECcCC-
Confidence 3588999999998653 4467 3788999999999 54 4444322 1233689999999998
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.++.+ + ....+++|+.|++.++. +..++.. .....+++|++|.+.+++
T Consensus 104 ~l~~l--~-~~~~l~~L~~L~l~~N~-i~~~~~~-------------~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 104 QIASL--S-GIEKLVNLRVLYMSNNK-ITNWGEI-------------DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECCCH--H-HHHHHHHSSEEEESEEE-CCCHHHH-------------HHHTTTTTCSEEEECSCH
T ss_pred cCCcC--C-ccccCCCCCEEECCCCc-CCchhHH-------------HHHhcCCCCCEEEecCCc
Confidence 56655 2 56789999999999885 4443210 134467899999998874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.8e-05 Score=55.39 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcc
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
++|+.|+++++ .++.+. +.....+++|+.|+++++. +..++.. ....+++|+.|.+.+. +++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~~~--------------~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSNK-LTAIPTG--------------VFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT--------------TTTTCTTCCEEECCSS-CCC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCCC-CCccChh--------------HhCCcchhhEEECCCC-ccc
Confidence 56666666665 344432 2334556666666666653 4444311 1124556666666553 333
Q ss_pred eeecCCCccceeCCCccEEEEeCC
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
.+..+. ...+++|++|++.+.
T Consensus 95 ~l~~~~---~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 95 SIPRGA---FDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCTTT---TTTCTTCSEEECCSS
T ss_pred eeCHHH---hccccCCCEEEeCCC
Confidence 333321 123566666666554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.72 E-value=4.7e-05 Score=56.65 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=51.9
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
+|...+++|+.|+++++.. ..++...+..+++|++|+++-..+..++.. .+..+++|+.|++++
T Consensus 24 ip~~~~~~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---------------~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 24 VPTGIPTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLTVLPAG---------------VFDKLTQLTQLSLND 87 (170)
T ss_dssp CCSCCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------TTTTCTTCCEEECCS
T ss_pred cCccCCCCCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCCcCccChh---------------hccCCCCCCEEECCC
Confidence 4444456777777776543 333333356677777777733345544331 123467777777777
Q ss_pred ccCccccCCchHHhhcccCCEEEEecC
Q 046905 96 CKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 96 C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
. .++.+. +.....+++|+.|++.+.
T Consensus 88 N-~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 N-QLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp S-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred C-ccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 6 455542 233556777777777764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=60.04 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=44.9
Q ss_pred HhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEe
Q 046905 108 AKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVT 187 (225)
Q Consensus 108 ~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~ 187 (225)
+..+++|+.|++.++..+..++.. ....+++|+.|.|.+. +|+.+.... ...+++|++|+++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~--------------~~~~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR--------------DLRGLGELRNLTIVKS-GLRFVAPDA---FHFTPRLSRLNLS 88 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG--------------GSCSCCCCSEEECCSS-CCCEECTTG---GGSCSCCCEEECC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh--------------HhccccCCCEEECCCC-ccceeCHHH---hcCCcCCCEEeCC
Confidence 445556666666554445544321 2234556666666655 455544321 2346666666666
Q ss_pred CCCCCceecCCCCCCCCeeEEEecCC
Q 046905 188 GCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 188 ~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
+. +|+.+|.......+|+.|.+.++
T Consensus 89 ~N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred CC-ccceeCHHHcccCCceEEEeeCC
Confidence 63 55666554322233666666543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=52.91 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=15.4
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
++|+.|+++++ .++.+. +.....+++|+.|+++++
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC
Confidence 44555555544 233321 222334455555555544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=5.7e-05 Score=63.32 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=78.3
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc-
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK- 97 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~- 97 (225)
.+++|+.|.|+++.... ++. + .+++|++|++ .|. +..-. ... -....+|+|+.|+++.+.
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~-l~~~~----l~~---------l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGG-LPDSV----VED---------ILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSB-CCHHH----HHH---------HHHSBCTTCCEEEEECBCG
T ss_pred cCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCC-CChHH----HHH---------HHHccCCCCcEEEEecccc
Confidence 57899999999863332 332 2 3789999999 553 32100 000 001248999999985321
Q ss_pred ------CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCccee----
Q 046905 98 ------KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSF---- 167 (225)
Q Consensus 98 ------~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~---- 167 (225)
.++.+........+|+|+.|.+.+|.-.......- .....+|+|++|.|+.+ .+...
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l------------a~a~~~~~L~~LdLs~n-~L~d~G~~~ 298 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF------------LESDILPQLETMDISAG-VLTDEGARL 298 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH------------HHCSSGGGCSEEECCSS-CCBHHHHHH
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH------------HhCccCCCCCEEECCCC-CCChHHHHH
Confidence 12222110111358999999999986321111000 11135789999999653 45432
Q ss_pred -ecCCCccceeCCCccEEEEeCCC
Q 046905 168 -CSGVVDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 168 -~~~~~~~~~~~p~L~~L~I~~C~ 190 (225)
..+ ...+++|++|++++|.
T Consensus 299 L~~~----L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 299 LLDH----VDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHTT----HHHHTTCSEEECCSBB
T ss_pred HHhh----cccCCcceEEECCCCc
Confidence 221 1357899999999884
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0003 Score=57.97 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=14.1
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
.+|+.|++++.+.+..++...+..+++|++|++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l 63 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEEC
Confidence 344555554322233333333344455555555
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=7.9e-06 Score=68.78 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred cccCccEEEEeeCCccccCCHhHHHh-----ccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEec
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEV-----LHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVV 93 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~-----l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i 93 (225)
.+++|+.|+++++..... ....+.. .++|++|++ +|. +..... ......+++|+.|++
T Consensus 70 ~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~--------------~~l~~~L~~L~~L~L 133 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQ-LDPAGL--------------RTLLPVFLRARKLGL 133 (372)
T ss_dssp HHTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCC-CCHHHH--------------HHTHHHHHTEEEEEC
T ss_pred HHhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCC-CCHHHH--------------HHHHHHHHhccHhhc
Confidence 356788888887653221 1111222 258888888 553 221100 011122456777777
Q ss_pred cCccCccccCCchHH----hhcccCCEEEEecCc
Q 046905 94 FSCKKLMNLVPSSVA----KSLERLVTLRVSGCS 123 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~----~~l~~L~~L~I~~C~ 123 (225)
++| .+......... ...++|++|++++|.
T Consensus 134 s~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 134 QLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp CSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 766 34332111111 123567777777664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00021 Score=60.07 Aligned_cols=144 Identities=13% Similarity=-0.064 Sum_probs=81.3
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccc-ccccccceEeccCccCc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIK-ISFGNLTHLVVFSCKKL 99 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~-~~l~~L~~L~i~~C~~L 99 (225)
++|+.|+++++.........+...+++|++|++ +| .+...... .+.... ...++|+.|++++| .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~-----------~L~~~L~~~~~~L~~L~Ls~n-~l 167 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK-----------DLRDLLLHDQCQITTLRLSNN-PL 167 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH-----------HHHHHHHSTTCCCCEEECCSS-CC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH-----------HHHHHHHhcCCccceeeCCCC-CC
Confidence 689999999876433222223456789999999 65 33321100 000000 12578999999999 45
Q ss_pred cccCC---chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCC-Cccc
Q 046905 100 MNLVP---SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGV-VDYT 175 (225)
Q Consensus 100 ~~l~~---~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~-~~~~ 175 (225)
..... ...+...++|++|++++|. +.......- .......++|+.|.+.++. +....... ....
T Consensus 168 ~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L----------~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L 235 (372)
T 3un9_A 168 TAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL----------AAQLDRNRQLQELNVAYNG-AGDTAALALARAA 235 (372)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH----------HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH----------HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHH
Confidence 44211 2233568899999999986 432110000 0122345689999998873 32211100 0001
Q ss_pred eeCCCccEEEEeCCC
Q 046905 176 FKFPSLEDLIVTGCC 190 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~ 190 (225)
...++|++|++.+++
T Consensus 236 ~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 236 REHPSLELLHLYFNE 250 (372)
T ss_dssp HHCSSCCEEECTTSS
T ss_pred HhCCCCCEEeccCCC
Confidence 235899999999984
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.021 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=23.5
Q ss_pred eeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecC
Q 046905 176 FKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSE 212 (225)
Q Consensus 176 ~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~ 212 (225)
..+++|+.+.+. ..++.++.. +....+|+.+.+..
T Consensus 297 ~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 297 EGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT
T ss_pred hCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc
Confidence 356777777776 357777653 35568888888853
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.029 Score=47.41 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.6
Q ss_pred cccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCC----CceecC-CCCCCCCeeEEEecC
Q 046905 151 SKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCN----MKIFTS-GDLITPKRVDAWYSE 212 (225)
Q Consensus 151 p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~----L~~lp~-~~~~~~~L~~l~i~~ 212 (225)
.+|+.+.+. .+++.+.... +..+++|+.+.+.+... ++.++. .+...++|+.+.+.+
T Consensus 248 ~~L~~i~lp--~~i~~I~~~a---F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 248 SGITTVKLP--NGVTNIASRA---FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCCSEEEEE--TTCCEECTTT---TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCccEEEeC--CCccEEChhH---hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 355666552 2355554432 34567788888765321 223443 335667888887753
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.054 Score=43.17 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=35.1
Q ss_pred HhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcc--cCCEEEEec
Q 046905 44 EVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLE--RLVTLRVSG 121 (225)
Q Consensus 44 ~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~--~L~~L~I~~ 121 (225)
.++++|++|+++-..+..+.... .....+++|+.|++++. .++.+. .+..+. +|++|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-------------~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-------------SIVQKAPNLKILNLSGN-ELKSER---ELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-------------THHHHSTTCCEEECTTS-CCCSGG---GGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCCCCCCCccch-------------hHHhhCCCCCEEECCCC-ccCCch---hhhhcccCCcceEEccC
Confidence 45777777777444454442211 11234777778877765 344431 122333 777887777
Q ss_pred Cc
Q 046905 122 CS 123 (225)
Q Consensus 122 C~ 123 (225)
.+
T Consensus 230 Np 231 (267)
T 3rw6_A 230 NS 231 (267)
T ss_dssp ST
T ss_pred Cc
Confidence 66
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.04 Score=43.94 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=52.9
Q ss_pred cccccceEeccCccCccccCC-chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVP-SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.+++|+.|++++. ++..+.. +.....+++|+.|++++.. +..+... .....+ +|++|.+.+.|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l-------------~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSEREL-------------DKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGG-------------GGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhh-------------hhcccC-CcceEEccCCc
Confidence 4889999999987 4665421 2455689999999998764 4443110 111223 89999998887
Q ss_pred CcceeecCC---CccceeCCCccEEE
Q 046905 163 NLTSFCSGV---VDYTFKFPSLEDLI 185 (225)
Q Consensus 163 ~L~~~~~~~---~~~~~~~p~L~~L~ 185 (225)
--..+.... ......||+|+.|+
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 443332100 00224588888775
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=0.025 Score=42.25 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=20.5
Q ss_pred ccccceEeccCccCccccCC---chHHhhcccCCEEEEecCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~ 123 (225)
.++|++|++++|. +.+-.. ...+...++|++|++++|.
T Consensus 64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 64 NTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4567777777763 332211 1122334667777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=0.036 Score=41.37 Aligned_cols=114 Identities=10% Similarity=-0.026 Sum_probs=65.5
Q ss_pred cccccceEeccCccCccccCC---chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLD 160 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 160 (225)
..++|+.|++.+|..+..... ...+...++|++|++++|. +..-....- .......+.|++|.|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l----------~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFAL----------AEMLKVNNTLKSLNVES 102 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHH----------HHHHHHCSSCCEEECCS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHH----------HHHHHhCCCcCEEECcC
Confidence 467899999999855654321 1223446889999999986 321100000 01223446799999887
Q ss_pred CCCcce-----eecCCCccceeCCCccEEEE--eCCCCCce-----ecCCCCCCCCeeEEEecCCc
Q 046905 161 LENLTS-----FCSGVVDYTFKFPSLEDLIV--TGCCNMKI-----FTSGDLITPKRVDAWYSESA 214 (225)
Q Consensus 161 ~~~L~~-----~~~~~~~~~~~~p~L~~L~I--~~C~~L~~-----lp~~~~~~~~L~~l~i~~~~ 214 (225)
+. +.. +.. .....++|++|++ .++ .+.. +...+...++|+++++..+.
T Consensus 103 N~-i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NF-ISGSGILALVE----ALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SC-CCHHHHHHHHH----GGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred Cc-CCHHHHHHHHH----HHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 63 211 111 1124578999999 555 4442 22222345789999887553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=86.25 E-value=2.8 Score=34.65 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=19.0
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEE
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL 54 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 54 (225)
..+|+.+.+... ...+.......+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 229 KTGVKNIIIPDS--FTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TCCCCEEEECTT--CCEECSSTTTTCSSCCEEEE
T ss_pred cCCCceEEECCC--ceecccccccccccceeEEc
Confidence 357888877642 12233333456778888877
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.23 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.22 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.2 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.02 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.01 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.0 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.97 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.85 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.83 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.81 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.81 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.77 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.65 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.65 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.62 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.61 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.43 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.38 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.26 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.14 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.96 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.94 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 97.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 97.6 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.6 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.34 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.08 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 93.23 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 92.49 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 92.35 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 86.16 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 80.78 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.2e-12 Score=104.76 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=101.7
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
...+|++|+++++.........++..+++|++|.+ +|. +..... .....+++|++|++++|.+
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~---------------~~l~~~~~L~~L~Ls~c~~ 107 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIV---------------NTLAKNSNLVRLNLSGCSG 107 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHH---------------HHHTTCTTCSEEECTTCBS
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHH---------------HHHhcCCCCcCcccccccc
Confidence 35589999998765433322334567899999999 774 221100 1122356777777777777
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccccc-----ccccc--CCCCCcccc----cc----cccccccccceeecCcCCC
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMTQV-----VASCD--QGDSDVAGA----NL----EEEILFSKLRYMTMLDLEN 163 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l-----~~~~~--~~~~~~~~~----~~----~~~~~~p~L~~L~l~~~~~ 163 (225)
+++......+..+++|++|+|++|.++..- ..... -.....++. .. .-...+|+|++|++.+|+.
T Consensus 108 itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 187 (284)
T d2astb2 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187 (284)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence 665422333456777777777777654321 00000 000001110 00 1123468899999999988
Q ss_pred cceeecCCCccceeCCCccEEEEeCCCCCcee-cCCCCCCCCeeEEEecCC
Q 046905 164 LTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIF-TSGDLITPKRVDAWYSES 213 (225)
Q Consensus 164 L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l-p~~~~~~~~L~~l~i~~~ 213 (225)
++.-... ....+|+|++|++.+|..++.- ...+...|+|+.+++.++
T Consensus 188 itd~~~~---~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 188 LKNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CCGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCchhhh---hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 7643322 1245789999999999887632 122356788999988643
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.4e-13 Score=106.34 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=84.0
Q ss_pred hccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 45 VLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 45 ~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
...+|++|++ +|.--.+. +......+++|++|.+.+|+ +.+.. ...+..+++|++|++++|.
T Consensus 44 ~~~~L~~LdLs~~~i~~~~---------------l~~l~~~c~~L~~L~L~~~~-l~~~~-~~~l~~~~~L~~L~Ls~c~ 106 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVST---------------LHGILSQCSKLQNLSLEGLR-LSDPI-VNTLAKNSNLVRLNLSGCS 106 (284)
T ss_dssp CCBCCCEEECTTCEECHHH---------------HHHHHTTBCCCSEEECTTCB-CCHHH-HHHHTTCTTCSEEECTTCB
T ss_pred cCCCCCEEECCCCccCHHH---------------HHHHHHhCCCcccccccccC-CCcHH-HHHHhcCCCCcCccccccc
Confidence 4678999999 76411110 01123358999999999994 54432 2445678999999999998
Q ss_pred cccccccc----c-c-CCCCCcccc---cc----c-ccccccccceeecCcCC-CcceeecCCCccceeCCCccEEEEeC
Q 046905 124 AMTQVVAS----C-D-QGDSDVAGA---NL----E-EEILFSKLRYMTMLDLE-NLTSFCSGVVDYTFKFPSLEDLIVTG 188 (225)
Q Consensus 124 ~L~~l~~~----~-~-~~~~~~~~~---~~----~-~~~~~p~L~~L~l~~~~-~L~~~~~~~~~~~~~~p~L~~L~I~~ 188 (225)
++...... . . -...+.++. .. . .....+.|+.|.+.+|. ++..-.... ....+|+|++|++.+
T Consensus 107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~--l~~~~~~L~~L~L~~ 184 (284)
T d2astb2 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCPNLVHLDLSD 184 (284)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCTTCSEEECTT
T ss_pred cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccc--ccccccccccccccc
Confidence 76532100 0 0 000001100 00 0 00112445555555442 222111000 123579999999999
Q ss_pred CCCCce-ecCCCCCCCCeeEEEecCC
Q 046905 189 CCNMKI-FTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 189 C~~L~~-lp~~~~~~~~L~~l~i~~~ 213 (225)
|+.++. ....+..+++|+++.+..+
T Consensus 185 ~~~itd~~~~~l~~~~~L~~L~L~~C 210 (284)
T d2astb2 185 SVMLKNDCFQEFFQLNYLQHLSLSRC 210 (284)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ccCCCchhhhhhcccCcCCEEECCCC
Confidence 998873 3334467899999999764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.8e-11 Score=92.91 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=113.4
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..+++++|+++++. +..+|...+.++++|++|+++-..+..++... .+++|+.|+++
T Consensus 24 ~iP~~lp~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~-----------------~l~~L~~L~Ls 85 (266)
T d1p9ag_ 24 ALPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-----------------TLPVLGTLDLS 85 (266)
T ss_dssp SCCSCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-----------------CCTTCCEEECC
T ss_pred eeCcCcCcCCCEEECcCCc-CCCcCHHHhhcccccccccccccccccccccc-----------------ccccccccccc
Confidence 3565555799999999754 45566555778999999999333677765422 36778888887
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC-----C-----cccccccccccccccceeecCcCCCc
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS-----D-----VAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~-----~-----~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
++ .++.. +.....+++|+.|++.++.. ..+.......-. . ...........+++|+.|.+.++ ++
T Consensus 86 ~N-~l~~~--~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l 160 (266)
T d1p9ag_ 86 HN-QLQSL--PLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NL 160 (266)
T ss_dssp SS-CCSSC--CCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred cc-ccccc--cccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhcccccc-cc
Confidence 76 34443 23456677788888777652 222211110000 0 00111122345678888888776 56
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
+.+..+. ...+++|++|+++++ +|+.+|.+...+++|+.|.+.++.|
T Consensus 161 ~~~~~~~---~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 161 TELPAGL---LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp SCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cccCccc---cccccccceeecccC-CCcccChhHCCCCCCCEEEecCCCC
Confidence 6665432 245899999999998 5999999888899999999986543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.02 E-value=1.7e-09 Score=86.35 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=70.7
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC----CC-----cccccccccccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD----SD-----VAGANLEEEILFSKLR 154 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~----~~-----~~~~~~~~~~~~p~L~ 154 (225)
.+++|+.+.+.++. +..+. ...+++|++|++.++......+..-.... .. ...........+++|+
T Consensus 148 ~l~~L~~l~l~~n~-l~~l~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~ 222 (305)
T d1xkua_ 148 GMKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222 (305)
T ss_dssp GCTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred cccccCccccccCC-ccccC----cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence 34567777777663 33331 12356777777776653322211100000 00 0111123344678889
Q ss_pred eeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCC-------CCCCCeeEEEecCCcee
Q 046905 155 YMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGD-------LITPKRVDAWYSESACC 216 (225)
Q Consensus 155 ~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~-------~~~~~L~~l~i~~~~~~ 216 (225)
+|++.++ +++.++.+. ..+++|++|+++++ +++.++... ...++|+.+.++++.|.
T Consensus 223 ~L~L~~N-~L~~lp~~l----~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 223 ELHLNNN-KLVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp EEECCSS-CCSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred eeecccc-ccccccccc----ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 9998888 677775432 45889999999987 688776421 34577888998877663
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.01 E-value=5.8e-10 Score=84.07 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=48.7
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+.+++.|.+.++.. ..+.. ++.+++|++|++ ++ .+..+... ..+++|+.|++.++.
T Consensus 37 ~~l~~l~~L~l~~~~i-~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~l-----------------~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 37 TDLDQVTTLQADRLGI-KSIDG--VEYLNNLTQINFSNN-QLTDITPL-----------------KNLTKLVDILMNNNQ 95 (199)
T ss_dssp HHHTTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGG-----------------TTCTTCCEEECCSSC
T ss_pred HHhcCCCEEECCCCCC-CCccc--cccCCCcCcCccccc-cccCcccc-----------------cCCcccccccccccc
Confidence 3477889999887653 33332 567899999999 55 45554322 235666666666663
Q ss_pred CccccCCchHHhhcccCCEEEEecCc
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
+..+ .....+++|+.|++.+|.
T Consensus 96 -~~~~---~~l~~l~~L~~L~l~~~~ 117 (199)
T d2omxa2 96 -IADI---TPLANLTNLTGLTLFNNQ 117 (199)
T ss_dssp -CCCC---GGGTTCTTCSEEECCSSC
T ss_pred -cccc---cccccccccccccccccc
Confidence 2322 124456666666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.00 E-value=9.5e-10 Score=83.57 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=97.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+.+|+.|.+.++.. ..++. ++.+++|++|++ ++ .+..+.. ...+++|+.|+++++
T Consensus 43 ~~L~~L~~L~l~~~~i-~~l~~--l~~l~~L~~L~L~~n-~i~~l~~-----------------~~~l~~L~~L~l~~n- 100 (210)
T d1h6ta2 43 NELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGN-KLTDIKP-----------------LANLKNLGWLFLDEN- 100 (210)
T ss_dssp HHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGG-----------------GTTCTTCCEEECCSS-
T ss_pred HHhcCccEEECcCCCC-CCchh--HhhCCCCCEEeCCCc-cccCccc-----------------cccCccccccccccc-
Confidence 3477889998887653 33433 577899999999 54 4554432 123677888888777
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cccc---ccccccccccccceeecCcCCCcceeecCC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DVAG---ANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~~~---~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
+++.+ .....+++|+.|++.+|.. ..+......... ..+. ........+++|+.+.+.++ .++.+..
T Consensus 101 ~i~~l---~~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~i~~-- 173 (210)
T d1h6ta2 101 KVKDL---SSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP-- 173 (210)
T ss_dssp CCCCG---GGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--
T ss_pred ccccc---ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc-ccccccc--
Confidence 45554 2345677888888877752 222111100000 0000 01123445778888888776 3444432
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
...+++|++|++++| +++.+|. +..+++|+.|++.
T Consensus 174 ---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 174 ---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELF 208 (210)
T ss_dssp ---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEE
T ss_pred ---ccCCCCCCEEECCCC-CCCCChh-hcCCCCCCEEEcc
Confidence 135899999999988 6888873 5678999999874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.97 E-value=1.6e-09 Score=83.13 Aligned_cols=175 Identities=12% Similarity=0.079 Sum_probs=91.8
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccc-c--ccccc--cccccccccccceEec
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLES-H--VGVSK--LALIKISFGNLTHLVV 93 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~-~--l~~~~--l~~~~~~l~~L~~L~i 93 (225)
.+.+|+.|.+.++.. ..++. ++++++|++|++ ++ .+..+......... . +.... -.+....+++|+.+.+
T Consensus 39 ~l~~L~~L~l~~~~i-~~l~~--l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l 114 (227)
T d1h6ua2 39 DLDGITTLSAFGTGV-TTIEG--VQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (227)
T ss_dssp HHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HcCCcCEEECCCCCC-Ccchh--HhcCCCCcEeecCCc-eeecccccccccccccccccccccccccccccccccccccc
Confidence 466777777776543 33432 567778888777 44 34433322222110 0 00000 0112334566777777
Q ss_pred cCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cccc---ccccccccccccceeecCcCCCccee
Q 046905 94 FSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DVAG---ANLEEEILFSKLRYMTMLDLENLTSF 167 (225)
Q Consensus 94 ~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~~~---~~~~~~~~~p~L~~L~l~~~~~L~~~ 167 (225)
.+|.... . ......+.++.+.+.+|.- ............ ..+. ........+++|+.|.+.++ +++++
T Consensus 115 ~~~~~~~-~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n-~l~~l 188 (227)
T d1h6ua2 115 TSTQITD-V---TPLAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDI 188 (227)
T ss_dssp TTSCCCC-C---GGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred ccccccc-c---chhccccchhhhhchhhhh-chhhhhccccccccccccccccccchhhcccccceecccCCC-ccCCC
Confidence 6664321 1 1223345555555544431 111110000000 0000 00123456789999999887 56665
Q ss_pred ecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEec
Q 046905 168 CSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 168 ~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
.. ...+++|++|++++| +++.++. +..+++|+.+.++
T Consensus 189 ~~-----l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 189 SP-----LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp GG-----GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred hh-----hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEee
Confidence 43 235899999999998 6888874 5688999999885
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.91 E-value=3e-09 Score=80.01 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=67.2
Q ss_pred cccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 20 LFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 20 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
.|++|++|+++++.. ..++. +.++++|++|++ ++ .+..++. ...+++|+.|++.+|..
T Consensus 60 ~l~nL~~L~Ls~N~l-~~~~~--l~~l~~L~~L~l~~n-~~~~~~~-----------------l~~l~~L~~L~l~~~~~ 118 (199)
T d2omxa2 60 YLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNN-QIADITP-----------------LANLTNLTGLTLFNNQI 118 (199)
T ss_dssp GCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSS-CCCCCGG-----------------GTTCTTCSEEECCSSCC
T ss_pred cCCCcCcCccccccc-cCccc--ccCCccccccccccc-ccccccc-----------------ccccccccccccccccc
Confidence 456666666665432 22322 345666666666 33 2222221 12355666666665543
Q ss_pred ccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeC
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKF 178 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~ 178 (225)
.. . .....+++|+.|+++++. +..++ ....+++|+.|.+.++ +++.+.. ...+
T Consensus 119 ~~-~---~~~~~l~~L~~L~l~~n~-l~~~~----------------~l~~~~~L~~L~l~~n-~l~~l~~-----l~~l 171 (199)
T d2omxa2 119 TD-I---DPLKNLTNLNRLELSSNT-ISDIS----------------ALSGLTSLQQLNFSSN-QVTDLKP-----LANL 171 (199)
T ss_dssp CC-C---GGGTTCTTCSEEECCSSC-CCCCG----------------GGTTCTTCSEEECCSS-CCCCCGG-----GTTC
T ss_pred cc-c---cccchhhhhHHhhhhhhh-hcccc----------------cccccccccccccccc-cccCCcc-----ccCC
Confidence 22 1 123456666666666553 32221 2234556666666554 2333321 1235
Q ss_pred CCccEEEEeCCCCCceecCCCCCCCCeeE
Q 046905 179 PSLEDLIVTGCCNMKIFTSGDLITPKRVD 207 (225)
Q Consensus 179 p~L~~L~I~~C~~L~~lp~~~~~~~~L~~ 207 (225)
++|++|+++++ +++.++. +..+++|++
T Consensus 172 ~~L~~L~ls~N-~i~~i~~-l~~L~~L~~ 198 (199)
T d2omxa2 172 TTLERLDISSN-KVSDISV-LAKLTNLES 198 (199)
T ss_dssp TTCCEEECCSS-CCCCCGG-GGGCTTCSE
T ss_pred CCCCEEECCCC-CCCCCcc-ccCCCCCCc
Confidence 66666666666 4555542 344555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.7e-08 Score=79.75 Aligned_cols=190 Identities=9% Similarity=0.021 Sum_probs=104.8
Q ss_pred cccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCccc---cccc------cccc-ccccccc
Q 046905 16 FPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLE---SHVG------VSKL-ALIKISF 85 (225)
Q Consensus 16 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~---~~l~------~~~l-~~~~~~l 85 (225)
+|.....++++|+|+++. ++.+|...+..+++|++|+++...+..+........ ..+. ...+ +.....+
T Consensus 26 iP~~ip~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 104 (284)
T d1ozna_ 26 VPVGIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (284)
T ss_dssp CCTTCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred cCCCCCCCCCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 455556689999999754 566776667889999999995556666644321110 0010 0112 1234557
Q ss_pred cccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC-----CCcc-----cccccccccccccce
Q 046905 86 GNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD-----SDVA-----GANLEEEILFSKLRY 155 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~-----~~~~-----~~~~~~~~~~p~L~~ 155 (225)
++|+.|++.++.. ..+. ......+++|+.+++.+.. ++.++....... .+.+ .........+++|+.
T Consensus 105 ~~L~~L~l~~n~~-~~~~-~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~ 181 (284)
T d1ozna_ 105 GRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (284)
T ss_dssp TTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEecCCccc-cccc-ccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence 8899999988853 3332 3344567888888888764 655543211100 0000 001112223455555
Q ss_pred eecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecC-CCCCCCCeeEEEecCCc
Q 046905 156 MTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS-GDLITPKRVDAWYSESA 214 (225)
Q Consensus 156 L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~-~~~~~~~L~~l~i~~~~ 214 (225)
+.+.++. +..+... ....+++|++|+++++. +..++. .+..+++|++|+++++.
T Consensus 182 l~l~~N~-l~~i~~~---~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 182 LLLHQNR-VAHVHPH---AFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp EECCSSC-CCEECTT---TTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hhhhhcc-ccccChh---Hhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence 5555443 2223221 12346778888887763 444443 34567788888887543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.83 E-value=7e-09 Score=84.73 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=93.5
Q ss_pred ccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccC
Q 046905 17 PRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFS 95 (225)
Q Consensus 17 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~ 95 (225)
|.+..++|++|.+.++.. ..++. +..+++|+.|++ ++ .+..++... .+++|+.|++++
T Consensus 214 ~~~~~~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~-----------------~~~~L~~L~l~~ 272 (384)
T d2omza2 214 PLGILTNLDELSLNGNQL-KDIGT--LASLTNLTDLDLANN-QISNLAPLS-----------------GLTKLTELKLGA 272 (384)
T ss_dssp GGGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSS-CCCCCGGGT-----------------TCTTCSEEECCS
T ss_pred cccccCCCCEEECCCCCC-CCcch--hhcccccchhccccC-ccCCCCccc-----------------ccccCCEeeccC
Confidence 345678999999988653 34443 577899999999 55 344443322 244555555544
Q ss_pred ccCccccCC-------------------chHHhhcccCCEEEEecCcccccccccccCCCCCccccccccccccccccee
Q 046905 96 CKKLMNLVP-------------------SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYM 156 (225)
Q Consensus 96 C~~L~~l~~-------------------~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L 156 (225)
++ +..+.. ......+++++.|+++++. +..+ .....+|+|++|
T Consensus 273 ~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~l----------------~~l~~l~~L~~L 334 (384)
T d2omza2 273 NQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDI----------------SPVSSLTKLQRL 334 (384)
T ss_dssp SC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCC----------------GGGGGCTTCCEE
T ss_pred cc-cCCCCccccccccccccccccccccccccchhcccCeEECCCCC-CCCC----------------cccccCCCCCEE
Confidence 42 222200 0122344455555554442 3322 134578999999
Q ss_pred ecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCC
Q 046905 157 TMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 157 ~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
.+.++ +++.+.. ...+|+|++|+++++ +++.++. +..+++|+.++++++
T Consensus 335 ~L~~n-~l~~l~~-----l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 335 FFANN-KVSDVSS-----LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred ECCCC-CCCCChh-----HcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence 99998 5665542 235899999999887 6777764 567899999999765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=1.2e-08 Score=78.09 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=92.7
Q ss_pred cccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccc---cccccccc--ccccccccccceE
Q 046905 18 RHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLE---SHVGVSKL--ALIKISFGNLTHL 91 (225)
Q Consensus 18 ~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~---~~l~~~~l--~~~~~~l~~L~~L 91 (225)
...+.++..+.+......+..+ ...+.+|++|++ +| +++++...+.+.. -.+....+ ......+++|+.+
T Consensus 15 d~~l~~~~~~~l~~~~~~d~~~---~~~l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l 90 (227)
T d1h6ua2 15 DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITEL 90 (227)
T ss_dssp SHHHHHHHHHHTTCSSTTSEEC---HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEE
T ss_pred CHHHHHHHHHHhCCCCcCCcCC---HHHcCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCceeecccccccccccccc
Confidence 3345554444443333223222 467899999999 66 3554422111110 00111111 1123345666666
Q ss_pred eccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cccc--c-cccccccccccceeecCcCCCcc
Q 046905 92 VVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DVAG--A-NLEEEILFSKLRYMTMLDLENLT 165 (225)
Q Consensus 92 ~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~~~--~-~~~~~~~~p~L~~L~l~~~~~L~ 165 (225)
.+.++. ++.+ .....+++|+.+.+.+|... .+......... ..+. . ........++|++|.+.++.- .
T Consensus 91 ~~~~n~-~~~i---~~l~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~-~ 164 (227)
T d1h6ua2 91 ELSGNP-LKNV---SAIAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-S 164 (227)
T ss_dssp ECCSCC-CSCC---GGGTTCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-C
T ss_pred cccccc-cccc---cccccccccccccccccccc-ccchhccccchhhhhchhhhhchhhhhcccccccccccccccc-c
Confidence 666552 3333 22345666666666665422 11111100000 0000 0 112234567788888876632 2
Q ss_pred eeecCCCccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 166 SFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+.. ...+++|++|++++| +++.++. +..+++|++|+++++..
T Consensus 165 ~~~~-----l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~l 207 (227)
T d1h6ua2 165 DLTP-----LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQI 207 (227)
T ss_dssp CCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred cchh-----hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCcC
Confidence 2221 135899999999998 7888764 56789999999987754
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.81 E-value=3.1e-08 Score=79.18 Aligned_cols=61 Identities=7% Similarity=-0.171 Sum_probs=40.0
Q ss_pred cccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCc-eecCCCCCCCCeeEEEecCCce
Q 046905 149 LFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMK-IFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 149 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~-~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
.+++|+.+.+.++.--..+.. ...+++|+.|+++++ +++ .+|..+..+++|++++++.+..
T Consensus 219 ~~~~l~~l~~~~~~l~~~~~~-----~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l 280 (313)
T d1ogqa_ 219 SDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ccccccccccccccccccccc-----cccccccccccCccC-eecccCChHHhCCCCCCEEECcCCcc
Confidence 445666666655532111111 134788999999887 455 7888788889999999887654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.81 E-value=8.1e-09 Score=78.28 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=85.7
Q ss_pred HhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 44 EVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 44 ~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
..+.+|++|++ +| .++.+.. ...+++|+.|+++++ +++.+. ....+++|+.|++.+|
T Consensus 43 ~~L~~L~~L~l~~~-~i~~l~~-----------------l~~l~~L~~L~L~~n-~i~~l~---~~~~l~~L~~L~l~~n 100 (210)
T d1h6ta2 43 NELNSIDQIIANNS-DIKSVQG-----------------IQYLPNVTKLFLNGN-KLTDIK---PLANLKNLGWLFLDEN 100 (210)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-----------------GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS
T ss_pred HHhcCccEEECcCC-CCCCchh-----------------HhhCCCCCEEeCCCc-cccCcc---ccccCccccccccccc
Confidence 45789999999 54 4444321 234899999999999 566652 3468999999999998
Q ss_pred cccccccccccCCCC---Ccccc---cccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceec
Q 046905 123 SAMTQVVASCDQGDS---DVAGA---NLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFT 196 (225)
Q Consensus 123 ~~L~~l~~~~~~~~~---~~~~~---~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp 196 (225)
. ++.++........ ..++. .......++.|+.+.+.++. ++... ....+++|+.+.+.++ +++.++
T Consensus 101 ~-i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~-l~~~~-----~~~~l~~L~~l~l~~n-~l~~i~ 172 (210)
T d1h6ta2 101 K-VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDIT-----VLSRLTKLDTLSLEDN-QISDIV 172 (210)
T ss_dssp C-CCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS-CCCCCG
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccc-ccccc-----cccccccccccccccc-cccccc
Confidence 5 6665421111000 00000 00112233444444443331 22221 1245889999999998 567665
Q ss_pred CCCCCCCCeeEEEecCCce
Q 046905 197 SGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 197 ~~~~~~~~L~~l~i~~~~~ 215 (225)
. +..+++|+.++++++..
T Consensus 173 ~-l~~l~~L~~L~Ls~N~i 190 (210)
T d1h6ta2 173 P-LAGLTKLQNLYLSKNHI 190 (210)
T ss_dssp G-GTTCTTCCEEECCSSCC
T ss_pred c-ccCCCCCCEEECCCCCC
Confidence 3 56789999999987644
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.2e-08 Score=74.82 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.5
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceE
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEI 62 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~ 62 (225)
.+|.+.+++++.|+++++. +..+|...+.++++|++|++ ++.....+
T Consensus 22 ~iP~~l~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i 69 (242)
T d1xwdc1 22 EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVI 69 (242)
T ss_dssp SCCSCSCSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEE
T ss_pred CcCCCCCCCCCEEECcCCc-CCccChhHhhccchhhhhhhcccccccee
Confidence 4566667799999999755 45666665678999999999 65544433
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.65 E-value=7.2e-08 Score=78.52 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=107.8
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++++.+.++++.... ++. ....++|++|++ ++ .+++++ ....+++|+.|++.++.
T Consensus 194 ~~l~~~~~l~l~~n~i~~-~~~--~~~~~~L~~L~l~~n-~l~~~~-----------------~l~~l~~L~~L~l~~n~ 252 (384)
T d2omza2 194 AKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGN-QLKDIG-----------------TLASLTNLTDLDLANNQ 252 (384)
T ss_dssp GGCTTCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSS-CCCCCG-----------------GGGGCTTCSEEECCSSC
T ss_pred ccccccceeeccCCccCC-CCc--ccccCCCCEEECCCC-CCCCcc-----------------hhhcccccchhccccCc
Confidence 457899999998755333 332 356899999999 55 444432 22348899999999984
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCC---Cccc---ccccccccccccceeecCcCCCcceeecCC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDS---DVAG---ANLEEEILFSKLRYMTMLDLENLTSFCSGV 171 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~---~~~~---~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 171 (225)
++.+. ....+++|++|++.++. +..++........ .... ........+++++.|.+.++ +++.+..
T Consensus 253 -l~~~~---~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~-- 324 (384)
T d2omza2 253 -ISNLA---PLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-- 324 (384)
T ss_dssp -CCCCG---GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred -cCCCC---cccccccCCEeeccCcc-cCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcc--
Confidence 56552 35678999999998775 4444321111000 0000 01123456788888888776 4555432
Q ss_pred CccceeCCCccEEEEeCCCCCceecCCCCCCCCeeEEEecCCce
Q 046905 172 VDYTFKFPSLEDLIVTGCCNMKIFTSGDLITPKRVDAWYSESAC 215 (225)
Q Consensus 172 ~~~~~~~p~L~~L~I~~C~~L~~lp~~~~~~~~L~~l~i~~~~~ 215 (225)
...+|+|++|++++| +++.++ .+..+++|++++++.+..
T Consensus 325 ---l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~l 363 (384)
T d2omza2 325 ---VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQI 363 (384)
T ss_dssp ---GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred ---cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCcC
Confidence 246899999999999 788776 367789999999987654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.65 E-value=9.7e-08 Score=75.87 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=60.7
Q ss_pred cccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC
Q 046905 82 KISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL 161 (225)
Q Consensus 82 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 161 (225)
...++.++.|.++++ .+..+. +.....+++|++|++++| +++.++ .....+++|++|.+++.
T Consensus 191 ~~~~~~l~~L~~s~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~L~~lp---------------~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 191 LKGLNNLAKLGLSFN-SISAVD-NGSLANTPHLRELHLNNN-KLVKVP---------------GGLADHKYIQVVYLHNN 252 (305)
T ss_dssp GTTCTTCCEEECCSS-CCCEEC-TTTGGGSTTCCEEECCSS-CCSSCC---------------TTTTTCSSCCEEECCSS
T ss_pred hhccccccccccccc-cccccc-cccccccccceeeecccc-cccccc---------------cccccccCCCEEECCCC
Confidence 334567777877777 455543 345567788888888887 466654 23456899999999996
Q ss_pred CCcceeecCCC---ccceeCCCccEEEEeCCC
Q 046905 162 ENLTSFCSGVV---DYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 162 ~~L~~~~~~~~---~~~~~~p~L~~L~I~~C~ 190 (225)
+++++....- ......++|+.|.+.+.|
T Consensus 253 -~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 253 -NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp -CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 5877754320 011246789999999876
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5e-08 Score=74.93 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=100.8
Q ss_pred cccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCccccccccccccccccc
Q 046905 6 KDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKIS 84 (225)
Q Consensus 6 ~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 84 (225)
++++.+-.+.|. .+++|++|+++++.....++...+..+++++++.+ +|.++..+... ....
T Consensus 39 n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~---------------~~~~ 101 (242)
T d1xwdc1 39 TKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE---------------AFQN 101 (242)
T ss_dssp CCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT---------------SEEC
T ss_pred CcCCccChhHhh--ccchhhhhhhccccccceeeccccccccccccccccccccccccccc---------------cccc
Confidence 334444443333 37899999999876655555544567899999999 88888766542 2234
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCc--ccccccccccCC---CC---Cccc--cc--ccccccccc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS--AMTQVVASCDQG---DS---DVAG--AN--LEEEILFSK 152 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~--~L~~l~~~~~~~---~~---~~~~--~~--~~~~~~~p~ 152 (225)
+++|+.|++.++ +++.... ...+.+++.+.+..+. ++..+....... .. ..+. .. .......++
T Consensus 102 l~~L~~l~l~~~-~l~~~~~---~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~ 177 (242)
T d1xwdc1 102 LPNLQYLLISNT-GIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ 177 (242)
T ss_dssp CTTCCEEEEESC-CCCSCCC---CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCC
T ss_pred cccccccccchh-hhccccc---ccccccccccccccccccccccccccccccccccceeeecccccccccccccccchh
Confidence 788899988887 4544422 2234445555443332 333332211100 00 0000 00 011122345
Q ss_pred cceeecCcCCCcceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEe
Q 046905 153 LRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWY 210 (225)
Q Consensus 153 L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i 210 (225)
++++...+..+++.++.+. ...+++|++|++.+. +++.+|.. +..+++|+.+.+
T Consensus 178 l~~~~~l~~n~l~~l~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 178 LDELNLSDNNNLEELPNDV---FHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp EEEEECTTCTTCCCCCTTT---TTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSE
T ss_pred hhccccccccccccccHHH---hcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcC
Confidence 5566556666777776532 345789999999886 47888764 345555554443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=8.1e-08 Score=75.70 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=25.7
Q ss_pred ccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeC
Q 046905 146 EEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTG 188 (225)
Q Consensus 146 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~ 188 (225)
....+++|++|++.+.. +..+... ....+++|++|++.+
T Consensus 196 ~f~~l~~L~~L~l~~N~-i~~~~~~---~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 196 AFRDLGRLMTLYLFANN-LSALPTE---ALAPLRALQYLRLND 234 (284)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCHH---HHTTCTTCCEEECCS
T ss_pred Hhhhhhhcccccccccc-ccccccc---ccccccccCEEEecC
Confidence 34567889999988754 3333321 123578999999976
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2e-07 Score=72.74 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=81.9
Q ss_pred ccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccc
Q 046905 5 DKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKI 83 (225)
Q Consensus 5 ~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~ 83 (225)
+++++.+-.+.|. .+++|++|+++++. +..++. ...+++|++|++ ++ .+...+.. ..
T Consensus 40 ~N~i~~l~~~~f~--~l~~L~~L~L~~N~-l~~l~~--~~~l~~L~~L~Ls~N-~l~~~~~~----------------~~ 97 (266)
T d1p9ag_ 40 ENLLYTFSLATLM--PYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHN-QLQSLPLL----------------GQ 97 (266)
T ss_dssp TSCCSEEEGGGGT--TCTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSS-CCSSCCCC----------------TT
T ss_pred CCcCCCcCHHHhh--cccccccccccccc-cccccc--ccccccccccccccc-cccccccc----------------cc
Confidence 3444444443333 37789999998764 344543 356899999999 54 44433221 12
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCC--C---C-----ccccccccccccccc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGD--S---D-----VAGANLEEEILFSKL 153 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~--~---~-----~~~~~~~~~~~~p~L 153 (225)
.+++|+.|+++++..-. +. ......++++++|.+.++. +..++......- . . ...........+++|
T Consensus 98 ~l~~L~~L~l~~~~~~~-~~-~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L 174 (266)
T d1p9ag_ 98 TLPALTVLDVSFNRLTS-LP-LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (266)
T ss_dssp TCTTCCEEECCSSCCCC-CC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred cccccccccccccccce-ee-ccccccccccccccccccc-cceeccccccccccchhcccccccccccCcccccccccc
Confidence 24445555554443211 11 1222334444444444432 222221110000 0 0 000111234567899
Q ss_pred ceeecCcCCCcceeecCCCccceeCCCccEEEEeCC
Q 046905 154 RYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 154 ~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
++|.+++.. |++++.+. +.+++|+.|.+.+-
T Consensus 175 ~~L~Ls~N~-L~~lp~~~----~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 175 DTLLLQENS-LYTIPKGF----FGSHLLPFAFLHGN 205 (266)
T ss_dssp CEEECCSSC-CCCCCTTT----TTTCCCSEEECCSC
T ss_pred ceeecccCC-CcccChhH----CCCCCCCEEEecCC
Confidence 999999874 88887654 56899999999863
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.43 E-value=3e-09 Score=80.11 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=64.4
Q ss_pred CccEEEEee-CCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 23 RLRRLEVVR-DDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 23 ~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.++.+.+.+ ...+..++.. +..+++|++|+++...++++.. ...+++|+.|+++++ .++.
T Consensus 24 ~~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~I~~i~~-----------------l~~l~~L~~L~Ls~N-~i~~ 84 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISS-----------------LSGMENLRILSLGRN-LIKK 84 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEEESCCCC-----------------HHHHTTCCEEECCEE-EECS
T ss_pred ccceeeeecccCchhhhhhH-HhcccccceeECcccCCCCccc-----------------ccCCccccChhhccc-cccc
Confidence 344555554 2233334333 4667777777772223443321 123667777777766 3554
Q ss_pred cCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcC--CCcceeecCCCccceeCC
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDL--ENLTSFCSGVVDYTFKFP 179 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~--~~L~~~~~~~~~~~~~~p 179 (225)
+ +.....+++|+.|++.++. +..+. ....+++|+.|.+.++ ..+..+. ....+|
T Consensus 85 i--~~~~~~~~~L~~L~l~~N~-i~~l~----------------~~~~l~~L~~L~L~~N~i~~~~~~~-----~l~~l~ 140 (198)
T d1m9la_ 85 I--ENLDAVADTLEELWISYNQ-IASLS----------------GIEKLVNLRVLYMSNNKITNWGEID-----KLAALD 140 (198)
T ss_dssp C--SSHHHHHHHCCEEECSEEE-CCCHH----------------HHHHHHHSSEEEESEEECCCHHHHH-----HHTTTT
T ss_pred c--ccccccccccccccccccc-ccccc----------------cccccccccccccccchhccccccc-----cccCCC
Confidence 4 2233445667777776653 44431 2335566777776654 2222111 112367
Q ss_pred CccEEEEeCCC
Q 046905 180 SLEDLIVTGCC 190 (225)
Q Consensus 180 ~L~~L~I~~C~ 190 (225)
+|++|.+.++|
T Consensus 141 ~L~~L~L~~N~ 151 (198)
T d1m9la_ 141 KLEDLLLAGNP 151 (198)
T ss_dssp TCSEEEECSSH
T ss_pred ccceeecCCCc
Confidence 77777777764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.5e-07 Score=67.05 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=63.2
Q ss_pred ccccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 83 ISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 83 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
..+++|+.|+++++ .++.+. ....+++|++|++++|. +..++. .....+|+|++|.+.++.
T Consensus 38 ~~l~~L~~L~Ls~N-~i~~l~---~~~~l~~L~~L~ls~N~-i~~l~~--------------~~~~~l~~L~~L~L~~N~ 98 (162)
T d1a9na_ 38 ATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNNR-ICRIGE--------------GLDQALPDLTELILTNNS 98 (162)
T ss_dssp GGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSSC-CCEECS--------------CHHHHCTTCCEEECCSCC
T ss_pred cccccCCEEECCCC-CCCccC---CcccCcchhhhhccccc-ccCCCc--------------cccccccccccceecccc
Confidence 34677888888877 466552 24567788888888875 555431 112357788888887763
Q ss_pred CcceeecCCCccceeCCCccEEEEeCCCCCceecC----CCCCCCCeeEEEe
Q 046905 163 NLTSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTS----GDLITPKRVDAWY 210 (225)
Q Consensus 163 ~L~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~----~~~~~~~L~~l~i 210 (225)
++.+..-. ....+|+|++|++.+|+ +..+|. ....+|+|+.|+.
T Consensus 99 -i~~~~~l~--~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 99 -LVELGDLD--PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp -CCCGGGGG--GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred -cccccccc--ccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence 22222100 12357888888888874 344442 1345677777654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=3.9e-07 Score=62.99 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=38.2
Q ss_pred cEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCC
Q 046905 25 RRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVP 104 (225)
Q Consensus 25 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 104 (225)
|.|+++++.. ..++. ++.+++|++|+++...+.+++. ....+++|+.|++++. .++.+
T Consensus 1 R~L~Ls~n~l-~~l~~--l~~l~~L~~L~ls~N~l~~lp~----------------~~~~l~~L~~L~l~~N-~i~~l-- 58 (124)
T d1dcea3 1 RVLHLAHKDL-TVLCH--LEQLLLVTHLDLSHNRLRALPP----------------ALAALRCLEVLQASDN-ALENV-- 58 (124)
T ss_dssp SEEECTTSCC-SSCCC--GGGGTTCCEEECCSSCCCCCCG----------------GGGGCTTCCEEECCSS-CCCCC--
T ss_pred CEEEcCCCCC-CCCcc--cccCCCCCEEECCCCccCcchh----------------hhhhhhcccccccccc-ccccc--
Confidence 3455554332 33332 4556666666664444544432 1223566666666664 44443
Q ss_pred chHHhhcccCCEEEEecCc
Q 046905 105 SSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 105 ~~~~~~l~~L~~L~I~~C~ 123 (225)
.....+++|++|++.++.
T Consensus 59 -~~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 59 -DGVANLPRLQELLLCNNR 76 (124)
T ss_dssp -GGGTTCSSCCEEECCSSC
T ss_pred -CccccccccCeEECCCCc
Confidence 124556666666666553
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.40 E-value=2.5e-07 Score=68.77 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=81.1
Q ss_pred ccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEecc
Q 046905 15 DFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVF 94 (225)
Q Consensus 15 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~ 94 (225)
.+|.+..+++++|+++++......+...+..+++|++|+++-..+..++. .....+++|++|+++
T Consensus 22 ~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~---------------~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------------NAFEGASHIQELQLG 86 (192)
T ss_dssp SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---------------TTTTTCTTCCEEECC
T ss_pred ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc---------------cccccccccceeeec
Confidence 34666667999999998765444555556789999999994344544433 123347889999999
Q ss_pred CccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 95 SCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 95 ~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
+. +++.+. +.....+++|++|++.+.. +..++.. ....+++|++|.+.+-+
T Consensus 87 ~N-~l~~l~-~~~F~~l~~L~~L~L~~N~-l~~i~~~--------------~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 87 EN-KIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMPG--------------SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SC-CCCEEC-SSSSTTCTTCCEEECCSSC-CCEECTT--------------SSTTCTTCCEEECTTCC
T ss_pred cc-cccccC-HHHHhCCCcccccccCCcc-ccccCHH--------------HhcCCcccccccccccc
Confidence 88 677764 3456789999999999875 7766532 22356788888887654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.9e-07 Score=64.62 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred ccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCcc
Q 046905 21 FGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLM 100 (225)
Q Consensus 21 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~ 100 (225)
..++|+|+++++.. ..++. ....+++|++|+++-..+.++.. ...+++|+.|++++|. ++
T Consensus 17 ~~~lr~L~L~~n~I-~~i~~-~~~~l~~L~~L~Ls~N~i~~l~~-----------------~~~l~~L~~L~ls~N~-i~ 76 (162)
T d1a9na_ 17 AVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKLDG-----------------FPLLRRLKTLLVNNNR-IC 76 (162)
T ss_dssp TTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEECC-----------------CCCCSSCCEEECCSSC-CC
T ss_pred cCcCcEEECCCCCC-CccCc-cccccccCCEEECCCCCCCccCC-----------------cccCcchhhhhccccc-cc
Confidence 45799999998653 44553 24678999999994446776632 2348899999999994 77
Q ss_pred ccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCC
Q 046905 101 NLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPS 180 (225)
Q Consensus 101 ~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~ 180 (225)
.+. +.....+++|++|++.++. +..+... .....+|+|++|.+.++|- .............+|+
T Consensus 77 ~l~-~~~~~~l~~L~~L~L~~N~-i~~~~~l-------------~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~ 140 (162)
T d1a9na_ 77 RIG-EGLDQALPDLTELILTNNS-LVELGDL-------------DPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQ 140 (162)
T ss_dssp EEC-SCHHHHCTTCCEEECCSCC-CCCGGGG-------------GGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTT
T ss_pred CCC-ccccccccccccceecccc-ccccccc-------------cccccccccchhhcCCCcc-ccccchHHHHHHHCCC
Confidence 663 3455689999999999985 4444211 2345689999999998852 2221100001234788
Q ss_pred ccEEE
Q 046905 181 LEDLI 185 (225)
Q Consensus 181 L~~L~ 185 (225)
|+.|+
T Consensus 141 L~~LD 145 (162)
T d1a9na_ 141 VRVLD 145 (162)
T ss_dssp CSEET
T ss_pred cCeeC
Confidence 87765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.26 E-value=2.6e-06 Score=63.03 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=77.1
Q ss_pred ccccceEeccCccCccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENL 164 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 164 (225)
++++++|++++. .+...........+++|++|++.+.. +..++. .....+++|++|.+.+. ++
T Consensus 28 p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~~~~L~~L~Ls~N-~l 90 (192)
T d1w8aa_ 28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------------NAFEGASHIQELQLGEN-KI 90 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------------TTTTTCTTCCEEECCSC-CC
T ss_pred CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccccc--------------cccccccccceeeeccc-cc
Confidence 467889999887 45443334455778999999998775 444432 23345788889888877 67
Q ss_pred ceeecCCCccceeCCCccEEEEeCCCCCceecCC-CCCCCCeeEEEecCCc
Q 046905 165 TSFCSGVVDYTFKFPSLEDLIVTGCCNMKIFTSG-DLITPKRVDAWYSESA 214 (225)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~I~~C~~L~~lp~~-~~~~~~L~~l~i~~~~ 214 (225)
+.+..+. +..+++|++|++.+. +++.+|.+ +..+++|+++++.++.
T Consensus 91 ~~l~~~~---F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 91 KEISNKM---FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEECSSS---STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cccCHHH---HhCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence 7776543 345889999999886 78888765 4678899999987553
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.22 E-value=2.9e-06 Score=67.34 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=49.4
Q ss_pred CccEEEEeeCCccc--cCCHhHHHhccCCcEEEE-eccccc-eEeccCCcccccccccccccccccccccceEeccCccC
Q 046905 23 RLRRLEVVRDDVAT--GFPVGLLEVLHSLETLHL-SCTSYK-EIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKK 98 (225)
Q Consensus 23 ~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l-~c~~l~-~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~ 98 (225)
+++.|++.++.... .+|.. ++++++|++|++ +|.++. .+|. ....+++|++|+++++.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~----------------~i~~L~~L~~L~Ls~N~- 112 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPP----------------AIAKLTQLHYLYITHTN- 112 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCG----------------GGGGCTTCSEEEEEEEC-
T ss_pred EEEEEECCCCCCCCCCCCChH-HhcCcccccccccccccccccccc----------------ccccccccchhhhcccc-
Confidence 57888888744332 35554 578888888888 777665 3322 23346667777776663
Q ss_pred ccccCCchHHhhcccCCEEEEecCcc
Q 046905 99 LMNLVPSSVAKSLERLVTLRVSGCSA 124 (225)
Q Consensus 99 L~~l~~~~~~~~l~~L~~L~I~~C~~ 124 (225)
+.... +.....+++|+.+++..+..
T Consensus 113 l~~~~-~~~~~~~~~L~~l~l~~N~~ 137 (313)
T d1ogqa_ 113 VSGAI-PDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp CEEEC-CGGGGGCTTCCEEECCSSEE
T ss_pred ccccc-cccccchhhhcccccccccc
Confidence 33332 23345566666666666543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.14 E-value=2.8e-06 Score=58.52 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=68.1
Q ss_pred CccccccccccccccccccCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccc
Q 046905 4 LDKDIQVIFQGDFPRHLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKI 83 (225)
Q Consensus 4 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~ 83 (225)
-++++..+- +-+.+++|++|+++++. ++.+|.. +..+++|++|+++-..+++++. ..
T Consensus 6 s~n~l~~l~----~l~~l~~L~~L~ls~N~-l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~-----------------~~ 62 (124)
T d1dcea3 6 AHKDLTVLC----HLEQLLLVTHLDLSHNR-LRALPPA-LAALRCLEVLQASDNALENVDG-----------------VA 62 (124)
T ss_dssp TTSCCSSCC----CGGGGTTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-----------------GT
T ss_pred CCCCCCCCc----ccccCCCCCEEECCCCc-cCcchhh-hhhhhcccccccccccccccCc-----------------cc
Confidence 345555442 12568899999999755 4667765 5789999999994456665532 23
Q ss_pred cccccceEeccCccCccccCCchHHhhcccCCEEEEecCc
Q 046905 84 SFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 123 (225)
.+++|+.|++.++ .+..+........+++|+.|++.+-+
T Consensus 63 ~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 63 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence 4899999999988 56555333456788999999998754
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.7e-05 Score=56.58 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred hhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeC
Q 046905 109 KSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTG 188 (225)
Q Consensus 109 ~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~ 188 (225)
..+++|++|+|.+...++.+... ....+++|+.|.+.+. +|+.+..+. ...+++|++|++++
T Consensus 28 ~~l~~l~~L~l~~n~~l~~i~~~--------------~f~~l~~L~~L~Ls~N-~l~~i~~~~---f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 28 PGAENLTELYIENQQHLQHLELR--------------DLRGLGELRNLTIVKS-GLRFVAPDA---FHFTPRLSRLNLSF 89 (156)
T ss_dssp CSCSCCSEEECCSCSSCCEECGG--------------GSCSCCCCSEEECCSS-CCCEECTTG---GGSCSCCCEEECCS
T ss_pred cCccccCeeecCCCccccccCch--------------hhccccccCcceeecc-ccCCccccc---ccccccccceeccC
Confidence 34556666666655555554321 2234566666666555 355554432 23466777777766
Q ss_pred CCCCceecCCCCCCCCeeEEEecCC
Q 046905 189 CCNMKIFTSGDLITPKRVDAWYSES 213 (225)
Q Consensus 189 C~~L~~lp~~~~~~~~L~~l~i~~~ 213 (225)
. +++.+|.+.....+|+.|+++++
T Consensus 90 N-~l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 90 N-ALESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred C-CCcccChhhhccccccccccCCC
Confidence 4 56666665544456777777643
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.94 E-value=6.6e-07 Score=66.89 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=73.7
Q ss_pred ccccCccEEEEeeCCccccCCHhHHHhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCcc
Q 046905 19 HLFGRLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCK 97 (225)
Q Consensus 19 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~ 97 (225)
..+++|+.|+++++.. ..++. +..+++|++|++ ++ .+.+++. ....+++|+.|++.++
T Consensus 45 ~~L~~L~~L~Ls~n~I-~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~----------------~~~~~~~L~~L~l~~N- 103 (198)
T d1m9la_ 45 STLKACKHLALSTNNI-EKISS--LSGMENLRILSLGRN-LIKKIEN----------------LDAVADTLEELWISYN- 103 (198)
T ss_dssp HHTTTCCEEECSEEEE-SCCCC--HHHHTTCCEEECCEE-EECSCSS----------------HHHHHHHCCEEECSEE-
T ss_pred hcccccceeECcccCC-CCccc--ccCCccccChhhccc-ccccccc----------------cccccccccccccccc-
Confidence 3588999999998653 44553 678999999999 55 3444422 1123578999999887
Q ss_pred CccccCCchHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 98 KLMNLVPSSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 98 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.++.+ .....+++|+.|+++++. +..+... .....+|+|+.|.+.+.|
T Consensus 104 ~i~~l---~~~~~l~~L~~L~L~~N~-i~~~~~~-------------~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 104 QIASL---SGIEKLVNLRVLYMSNNK-ITNWGEI-------------DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECCCH---HHHHHHHHSSEEEESEEE-CCCHHHH-------------HHHTTTTTCSEEEECSSH
T ss_pred ccccc---ccccccccccccccccch-hcccccc-------------ccccCCCccceeecCCCc
Confidence 56655 346788999999998874 4433210 133467899999998875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=97.83 E-value=5.2e-05 Score=60.03 Aligned_cols=76 Identities=25% Similarity=0.237 Sum_probs=46.8
Q ss_pred cCccEEEEeeCCccccCCHhHHHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccc
Q 046905 22 GRLRRLEVVRDDVATGFPVGLLEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMN 101 (225)
Q Consensus 22 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~ 101 (225)
.++++|+++++. ++.+|. .+++|++|+++|..+++++.. +++|+.|++.++ +++.
T Consensus 38 ~~l~~LdLs~~~-L~~lp~----~~~~L~~L~Ls~N~l~~lp~~-------------------~~~L~~L~l~~n-~l~~ 92 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSSLPE----LPPHLESLVASCNSLTELPEL-------------------PQSLKSLLVDNN-NLKA 92 (353)
T ss_dssp HTCSEEECTTSC-CSCCCS----CCTTCSEEECCSSCCSSCCCC-------------------CTTCCEEECCSS-CCSC
T ss_pred cCCCEEEeCCCC-CCCCCC----CCCCCCEEECCCCCCcccccc-------------------hhhhhhhhhhhc-ccch
Confidence 368899998754 456774 268899999877788877542 446666666655 2333
Q ss_pred cCCchHHhhcccCCEEEEecCcccccc
Q 046905 102 LVPSSVAKSLERLVTLRVSGCSAMTQV 128 (225)
Q Consensus 102 l~~~~~~~~l~~L~~L~I~~C~~L~~l 128 (225)
+. . -.+.|++|++.++. +..+
T Consensus 93 l~--~---lp~~L~~L~L~~n~-l~~l 113 (353)
T d1jl5a_ 93 LS--D---LPPLLEYLGVSNNQ-LEKL 113 (353)
T ss_dssp CC--S---CCTTCCEEECCSSC-CSSC
T ss_pred hh--h---hccccccccccccc-cccc
Confidence 31 0 11346666666553 4444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=97.60 E-value=0.00023 Score=56.14 Aligned_cols=71 Identities=17% Similarity=0.054 Sum_probs=53.5
Q ss_pred hcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCCCcceeecCCCccceeCCCccEEEEeCC
Q 046905 110 SLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLENLTSFCSGVVDYTFKFPSLEDLIVTGC 189 (225)
Q Consensus 110 ~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~p~L~~L~I~~C 189 (225)
.+++|++|++++|. +++++ ..+++|+.|.+.++ ++++++. .+++|++|++++|
T Consensus 282 ~~~~L~~L~Ls~N~-l~~lp------------------~~~~~L~~L~L~~N-~L~~l~~-------~~~~L~~L~L~~N 334 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIELP------------------ALPPRLERLIASFN-HLAEVPE-------LPQNLKQLHVEYN 334 (353)
T ss_dssp CCTTCCEEECCSSC-CSCCC------------------CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCc-cCccc------------------cccCCCCEEECCCC-cCCcccc-------ccCCCCEEECcCC
Confidence 46889999999984 66654 13689999999876 5766653 2578999999999
Q ss_pred CCCceecCCCCCCCCeeEEEec
Q 046905 190 CNMKIFTSGDLITPKRVDAWYS 211 (225)
Q Consensus 190 ~~L~~lp~~~~~~~~L~~l~i~ 211 (225)
+ ++++|.. +.+|+.|+++
T Consensus 335 ~-L~~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 335 P-LREFPDI---PESVEDLRMN 352 (353)
T ss_dssp C-CSSCCCC---CTTCCEEECC
T ss_pred c-CCCCCcc---ccccCeeECc
Confidence 6 9999852 4567888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=7.9e-05 Score=52.99 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=41.9
Q ss_pred HhccCCcEEEE-eccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 44 EVLHSLETLHL-SCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 44 ~~l~~L~~L~l-~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
..+++|++|++ +...++.+... .+..+++|+.|+++++ +++.+. +.....+++|++|++++.
T Consensus 28 ~~l~~l~~L~l~~n~~l~~i~~~---------------~f~~l~~L~~L~Ls~N-~l~~i~-~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 28 PGAENLTELYIENQQHLQHLELR---------------DLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CSCSCCSEEECCSCSSCCEECGG---------------GSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSS
T ss_pred cCccccCeeecCCCccccccCch---------------hhccccccCcceeecc-ccCCcc-cccccccccccceeccCC
Confidence 34667777777 55566666431 2234677777777777 466653 344566777777777766
Q ss_pred ccccccc
Q 046905 123 SAMTQVV 129 (225)
Q Consensus 123 ~~L~~l~ 129 (225)
. ++.++
T Consensus 91 ~-l~~l~ 96 (156)
T d2ifga3 91 A-LESLS 96 (156)
T ss_dssp C-CSCCC
T ss_pred C-CcccC
Confidence 5 55544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00063 Score=55.32 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred cCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCC---chHHhhcccCCEEEEecCc
Q 046905 47 HSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 47 ~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~ 123 (225)
++|++|+|+|.++....- ......+++++.|++.+|. ++.... ...+..+++|++|+++++.
T Consensus 2 ~~l~~ld~~~~~i~~~~~--------------~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~ 66 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARW--------------AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE 66 (460)
T ss_dssp EEEEEEEEESCCCCHHHH--------------HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred CCCCEEEeeCCcCChHHH--------------HHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence 467888888877654311 1223346788888888883 543211 1234567888888888764
Q ss_pred ccccccccccCCCCCccccccccc-ccccccceeecCcCCCcceeecCC-CccceeCCCccEEEEeCCC
Q 046905 124 AMTQVVASCDQGDSDVAGANLEEE-ILFSKLRYMTMLDLENLTSFCSGV-VDYTFKFPSLEDLIVTGCC 190 (225)
Q Consensus 124 ~L~~l~~~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~L~~~~~~~-~~~~~~~p~L~~L~I~~C~ 190 (225)
+.......-. ... ...++|++|.+.+|. ++...... ......+++|++|++.++.
T Consensus 67 -i~~~~~~~l~----------~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 67 -LGDVGVHCVL----------QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp -CHHHHHHHHH----------HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred -CChHHHHHHH----------HHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 3211000000 000 122468888888873 43321100 0011246788888888764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.00076 Score=54.81 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=15.5
Q ss_pred CccEEEEeeCCccccCCHhHHHhccCCcEEEE-ec
Q 046905 23 RLRRLEVVRDDVATGFPVGLLEVLHSLETLHL-SC 56 (225)
Q Consensus 23 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l-~c 56 (225)
+|+.|+|++......--...+..++++++|++ +|
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~ 37 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC 37 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence 45666665422211111122345666666666 55
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.018 Score=40.37 Aligned_cols=64 Identities=20% Similarity=0.136 Sum_probs=38.0
Q ss_pred cccccceEeccCccCccccCC-chHHhhcccCCEEEEecCcccccccccccCCCCCcccccccccccccccceeecCcCC
Q 046905 84 SFGNLTHLVVFSCKKLMNLVP-SSVAKSLERLVTLRVSGCSAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTMLDLE 162 (225)
Q Consensus 84 ~l~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 162 (225)
.+++|+.|+++++ +++.+.. ......+++|+.|++++.. ++.+.. ......++|+.|.+.+.|
T Consensus 63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~--------------l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--------------LDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGG--------------HHHHTTCCCSSCCCTTST
T ss_pred hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc-cccchh--------------hhhhhccccceeecCCCC
Confidence 4678888888877 4555421 2345677888888887754 444321 111234467777776655
Q ss_pred C
Q 046905 163 N 163 (225)
Q Consensus 163 ~ 163 (225)
-
T Consensus 127 l 127 (162)
T d1koha1 127 L 127 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.012 Score=41.23 Aligned_cols=94 Identities=18% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHhccCCcEEEEeccccceEeccCCcccccccccccccccccccccceEeccCccCccccCCchHHhhcccCCEEEEecC
Q 046905 43 LEVLHSLETLHLSCTSYKEIFSNEGCLESHVGVSKLALIKISFGNLTHLVVFSCKKLMNLVPSSVAKSLERLVTLRVSGC 122 (225)
Q Consensus 43 ~~~l~~L~~L~l~c~~l~~~~~~~~~~~~~l~~~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~I~~C 122 (225)
...+++|++|+++...+..+.... .....+++|+.|++++. .++++... ......+|+.|++.+.
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~-------------~~~~~l~~L~~L~Ls~N-~i~~l~~l-~~l~~~~L~~L~L~~N 125 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMS-------------SIVQKAPNLKILNLSGN-ELKSEREL-DKIKGLKLEELWLDGN 125 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGG-------------THHHHSTTCCCCCCTTS-CCCCGGGH-HHHTTCCCSSCCCTTS
T ss_pred HHhCCCCCEeeCCCccccCCchhH-------------HHHhhCCcccccccccC-ccccchhh-hhhhccccceeecCCC
Confidence 357899999999555566553211 12335789999999987 56665321 2234567889888876
Q ss_pred cccccccccccCCCCCcccccccccccccccceeecC
Q 046905 123 SAMTQVVASCDQGDSDVAGANLEEEILFSKLRYMTML 159 (225)
Q Consensus 123 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 159 (225)
+ +........ +........||+|+.|+=.
T Consensus 126 p-l~~~~~~~~-------~y~~~i~~~~P~L~~LDg~ 154 (162)
T d1koha1 126 S-LSDTFRDQS-------TYISAIRERFPKLLRLDGH 154 (162)
T ss_dssp T-TSSSSSSHH-------HHHHHHHTTSTTCCEETTE
T ss_pred C-cCcCcccch-------hHHHHHHHHCCCCCEECcC
Confidence 5 222111100 0001234578888888643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.35 E-value=0.01 Score=46.61 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred eCCCccEEEEeCCCCCce-----ecCCC--CCCCCeeEEEecCCc
Q 046905 177 KFPSLEDLIVTGCCNMKI-----FTSGD--LITPKRVDAWYSESA 214 (225)
Q Consensus 177 ~~p~L~~L~I~~C~~L~~-----lp~~~--~~~~~L~~l~i~~~~ 214 (225)
.+++|++|++++|. +.. +-..+ ...++|+.|+++.+.
T Consensus 241 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 241 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred ccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence 45677777777774 321 11111 123567777776543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.16 E-value=0.063 Score=37.55 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=17.2
Q ss_pred cccceEeccCccCccccCC---chHHhhcccCCEEEEecCc
Q 046905 86 GNLTHLVVFSCKKLMNLVP---SSVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 86 ~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~I~~C~ 123 (225)
++|++|++++| .+..-.. ...+...+.|++|++++|.
T Consensus 44 ~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~ 83 (167)
T d1pgva_ 44 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 83 (167)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred Cccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh
Confidence 45666666665 2332100 1122334556666666653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=80.78 E-value=0.17 Score=35.06 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=17.5
Q ss_pred ccccceEeccCccCccccCCc---hHHhhcccCCEEEEecCc
Q 046905 85 FGNLTHLVVFSCKKLMNLVPS---SVAKSLERLVTLRVSGCS 123 (225)
Q Consensus 85 l~~L~~L~i~~C~~L~~l~~~---~~~~~l~~L~~L~I~~C~ 123 (225)
.++|++|++++| .+...... ..+...++++.+++.+|.
T Consensus 45 n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 45 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 455666666665 33221111 122334556666655553
|