Citrus Sinensis ID: 046908
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.920 | 0.404 | 0.295 | 5e-49 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.831 | 0.450 | 0.330 | 6e-48 | |
| Q9FRS6 | 1029 | Leucine-rich repeat recep | no | no | 0.907 | 0.485 | 0.289 | 9e-48 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.891 | 0.432 | 0.300 | 4e-46 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.876 | 0.462 | 0.315 | 9e-46 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.820 | 0.361 | 0.307 | 9e-46 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.805 | 0.454 | 0.299 | 5e-44 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.796 | 0.438 | 0.319 | 8e-44 | |
| Q8LPB4 | 1021 | Phytosulfokine receptor 1 | N/A | no | 0.825 | 0.445 | 0.318 | 1e-43 | |
| O22938 | 890 | Leucine-rich repeat recep | no | no | 0.784 | 0.485 | 0.311 | 2e-43 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 171/578 (29%), Positives = 270/578 (46%), Gaps = 71/578 (12%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
I N ++L LDLS+N G IP L L L L ++NN L G + S+++NLT+L+
Sbjct: 357 ISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTL 416
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+ N +G + + KLE++ + ++ E + T ++ + IPS
Sbjct: 417 YHNNLEGKVP-KEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPS 475
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQKLIYL 170
+ + L L L N++VGN P ++N +G +P + G + +++
Sbjct: 476 SIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFM 535
Query: 171 DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
+ N +G++P S+ +K L + S N F+G + P+ L FD++ N F G I
Sbjct: 536 -IYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSI-SPLCGSSSYLS-FDVTENGFEGDI 592
Query: 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL- 289
+ T+L L L N F+G++ ++ L L+DI NSLSG + L
Sbjct: 593 PLELGKSTNLDRLRLGKNQFTGRIPRT-----FGKISELSLLDISRNSLSGIIPVELGLC 647
Query: 290 SSVKHLYLQKNAITG------------------DNKFFGRIPYQINELSNLHVLLLRGNS 331
+ H+ L N ++G NKF G +P +I L+N+ L L GNS
Sbjct: 648 KKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNS 707
Query: 332 LQGHIPNELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELSGEIPREIGQL 378
L G IP E+ ++ L L + L LS N L+GEIP EIGQL
Sbjct: 708 LNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQL 767
Query: 379 QNIR-ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
Q+++ AL+LS N +G IP + S L ESLDLSHN+L G +P Q+ + L N+SYN
Sbjct: 768 QDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYN 827
Query: 438 NLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMIDM 497
NL G K+QF+ + ++ GN LCGS P + AG + S+
Sbjct: 828 NLEGKL--KKQFSRWQADAFVGNAGLCGS------------PLSHCNRAGSKNQRSLSPK 873
Query: 498 VALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAKI 535
+ S +S + L VL I ++++ +F K+
Sbjct: 874 TVVIISAISSLAAIAL---MVLVIILFFKQNHDLFKKV 908
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 257/536 (47%), Gaps = 78/536 (14%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
GI L+ L L LS+NNF G+I L+N HL+ LD+S+N LSG++PS+L ++TSL++LD
Sbjct: 96 GIQKLQRLKVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLD 154
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+F GT+S + N S L L +S Q+ + T S L L LS P
Sbjct: 155 LTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPS-TLFRCSVLNSLNLSRNRFSGNP 213
Query: 122 SF---LLQHYHLIFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMGI---- 162
SF + + L LDLS+N + G+ P+ N F+G LP ++G+
Sbjct: 214 SFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSGALPSDIGLCPHL 273
Query: 163 ----------------VLQKLIYL---DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG 203
LQKL L D+ N+ GD P IG+M L D S N +G
Sbjct: 274 NRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTG 333
Query: 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263
+LP I S +L +LS N G++ + L + L N FSG + D + L
Sbjct: 334 KLPSSI-SNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLGL 392
Query: 264 SQLKSLELIDIFENSLSGSLV--SSFNLSSVKHLYLQKNAITGD---------------- 305
++ D N L+GS+ SS S+ L L N++TG
Sbjct: 393 QEM------DFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNL 446
Query: 306 --NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363
N F R+P +I L NL VL LR ++L G +P ++C + + L L
Sbjct: 447 SWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICES-----------QSLQILQLD 495
Query: 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423
N L+G IP IG +++ L+LS+N L+G IP+S SNL+ + L L N+LSG IP +L
Sbjct: 496 GNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKEL 555
Query: 424 TGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPP 479
L L NVS+N L G P + F + D+S+ GN +C L+R C+ + P
Sbjct: 556 GDLQNLLLVNVSFNRLIGRLPLGDVFQSLDQSAIQGNLGICSPLLRGPCTLNVPKP 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1 | Back alignment and function description |
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Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 167/577 (28%), Positives = 257/577 (44%), Gaps = 77/577 (13%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L ++ SSNNF G +P+ L N T L+VLD G VPS+ NL +L++L
Sbjct: 144 GLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLG 203
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VI 120
NF G + + S LE +++ M ++ E + ++L+ L L+ +L I
Sbjct: 204 LSGNNFGGKVP-KVIGELSSLETIILGYNGFMGEIPEE-FGKLTRLQYLDLAVGNLTGQI 261
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
PS L Q L + L N++ GKLPR +G + L++LD+ N G+
Sbjct: 262 PSSLGQLKQLTTVYLYQNRL------------TGKLPRELG-GMTSLVFLDLSDNQITGE 308
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
IP +GE+K L + +L RN +G +P I L++ +L N+ G + + L
Sbjct: 309 IPMEVGELKNLQLLNLMRNQLTGIIPSKIAE-LPNLEVLELWQNSLMGSLPVHLGKNSPL 367
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS-FNLSSVKHLYLQK 299
WL + +N SG + L ++L + +F NS SG + F+ ++ + +QK
Sbjct: 368 KWLDVSSNKLSGDIPSG-----LCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQK 422
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF------------- 346
N I+G IP +L L L L N+L G IP+++ +
Sbjct: 423 NHISGS------IPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSL 476
Query: 347 ---------LHRFYSNLKYMAG--------------LDLSSNELSGEIPREIGQLQNIRA 383
L F ++ AG LDLS N SG IP I + + +
Sbjct: 477 SSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVS 536
Query: 384 LNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443
LNL +N L G IP++ + + M LDLS+N L+G+IP L L NVS+N L GP
Sbjct: 537 LNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPI 596
Query: 444 PDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMIDMVALKWS 503
P FA D GN+ LCG ++ CS +L A G ++ +
Sbjct: 597 PSNMLFAAIDPKDLVGNNGLCGGVL-PPCSKSLALSAK-----GRNPGRIHVNHAVFGFI 650
Query: 504 FGASFVTVILGLF-AVLWINSYWR-----RRWYVFAK 534
G S + + +F A WI + W R Y+F K
Sbjct: 651 VGTSVIVAMGMMFLAGRWIYTRWDLYSNFAREYIFCK 687
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Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
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Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 193/643 (30%), Positives = 291/643 (45%), Gaps = 152/643 (23%)
Query: 12 LDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTI 71
LD+SSN F G IP L NLT L++L++S NQL+G++P++L NL SL+YL QGT+
Sbjct: 167 LDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTL 226
Query: 72 SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSFLLQHYHL 130
++++N S L V L +S + + V + +L+VL LS+ + +P L + L
Sbjct: 227 P-SAISNCSSL-VHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSL 284
Query: 131 IF--------------------------LDLSNNKVVGNFPI------------CSNNNF 152
LDL N++ G FP+ S N F
Sbjct: 285 TIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLF 344
Query: 153 AGKLPRNMGIVLQ-----------------------KLIYLDMPKNIFEGDIPYSIGEMK 189
+G++P ++G + + L LD N +G IP +G MK
Sbjct: 345 SGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMK 404
Query: 190 ELYMQDLSRNNFSGELPQPIVS-----------------------GCVALDLFDLSNNNF 226
L + L RN+FSG +P +V+ +L DLS N F
Sbjct: 405 ALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRF 464
Query: 227 FGQIFPKYMNLTHLHWLYLDNNHFSGKMD-------------------DANILVQLSQLK 267
G + NL++L +L L N FSG++ + V+LS L
Sbjct: 465 SGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLP 524
Query: 268 SLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG------------------DNKF 308
++++I + N+ SG + F +L S++++ L N+ +G DN
Sbjct: 525 NVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHI 584
Query: 309 FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368
G IP +I S L VL LR N L GHIP +L + R + LDL N LS
Sbjct: 585 SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPR-----------LKVLDLGQNNLS 633
Query: 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428
GEIP EI Q ++ +L+L +N LSG IP SFS L +DLS N L+G IP L ++
Sbjct: 634 GEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISS 693
Query: 429 -LSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAG 487
L FNVS NNL G P + S ++GN ELCG + ++C S+ T E G
Sbjct: 694 NLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESS-------TAE-G 745
Query: 488 EEEDDSMIDMVALKWSFGASFVTVILGLFAVLWINSY--WRRR 528
+++ MI M+ + A+ +L LF ++ + WR++
Sbjct: 746 KKKKRKMILMIVM-----AAIGAFLLSLFCCFYVYTLLKWRKK 783
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 249/529 (47%), Gaps = 46/529 (8%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
I NL NL EL L NN G IP NL ++ +L++ NQLSG++P + N+T+L+ L
Sbjct: 234 IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSL 293
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIP 121
+ G I ++L N L VL + + E S + L++S+ L +P
Sbjct: 294 HTNKLTGPIP-STLGNIKTLAVLHLYLNQLNGSIPPELGEMESMID-LEISENKLTGPVP 351
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMGIVLQKLIY 169
+ L +L L +N++ G P NNF G LP + KL
Sbjct: 352 DSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTI-CRGGKLEN 410
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
L + N FEG +P S+ + K L N+FSG++ + L+ DLSNNNF GQ
Sbjct: 411 LTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAF-GVYPTLNFIDLSNNNFHGQ 469
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMD-DANILVQLSQLKSLELIDIFENSLSGSLVSSF- 287
+ + L L NN +G + + + QLSQL D+ N ++G L S
Sbjct: 470 LSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQL------DLSSNRITGELPESIS 523
Query: 288 NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
N++ + L L N ++G +IP I L+NL L L N IP L ++ R
Sbjct: 524 NINRISKLQLNGNRLSG------KIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPR-- 575
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
L YM +LS N+L IP + +L ++ L+LS N L G I F +L+ E
Sbjct: 576 ------LYYM---NLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLER 626
Query: 408 LDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSL 467
LDLSHN LSG IPP + L++ +VS+NNL GP PD F ++ GN +LCGS+
Sbjct: 627 LDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSV 686
Query: 468 IRKKCSSALKPPATPTEEAGEEEDDSMIDMVALKWSFGASFVTVILGLF 516
+ LK P + T +D ++I + + ++V G+F
Sbjct: 687 ---NTTQGLK-PCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIF 731
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 253/510 (49%), Gaps = 58/510 (11%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
++L +LDLS+N+ G IP+ L L L L + NN L G + +++NLT+L++L + N
Sbjct: 360 QSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNN 419
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSFLL 125
+G + ++ KLEVL + ++ E + TS LK++ + H IP +
Sbjct: 420 LEGKLP-KEISALRKLEVLFLYENRFSGEIPQEIGNCTS-LKMIDMFGNHFEGEIPPSIG 477
Query: 126 QHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQKLIYLDMP 173
+ L L L N++VG P ++N +G +P + G L+ L L +
Sbjct: 478 RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF-LKGLEQLMLY 536
Query: 174 KNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK 233
N +G++P S+ ++ L +LS N +G + P+ L FD++NN F +I +
Sbjct: 537 NNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLS-FDVTNNGFEDEIPLE 594
Query: 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL-SSV 292
N +L L L N +GK I L +++ L L+D+ N+L+G++ L +
Sbjct: 595 LGNSQNLDRLRLGKNQLTGK-----IPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKL 649
Query: 293 KHLYLQKNAITG------------------DNKFFGRIPYQINELSNLHVLLLRGNSLQG 334
H+ L N ++G N+F +P ++ + L VL L GNSL G
Sbjct: 650 THIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNG 709
Query: 335 HIPNELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381
IP E+ ++ L + L + L LS N L+GEIP EIGQLQ++
Sbjct: 710 SIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDL 769
Query: 382 R-ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ AL+LS N +G IP + L E+LDLSHN+L+G +P + + L NVS+NNL
Sbjct: 770 QSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLG 829
Query: 441 GPTPDKEQFATFDESSYTGNHELCGSLIRK 470
G K+QF+ + S+ GN LCGS + +
Sbjct: 830 GKL--KKQFSRWPADSFLGNTGLCGSPLSR 857
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 152/508 (29%), Positives = 248/508 (48%), Gaps = 64/508 (12%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
I +LK+L +DL N G IP + + + L+ LD+S N+LSG +P +++ L LE L
Sbjct: 87 AIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLI 146
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQV-KTETWHPTSQLKVLKLSDCHLHVI 120
+ G I ++L+ L++L ++ ++ + W+ Q L+ ++ ++
Sbjct: 147 LKNNQLIGPIP-STLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNIS 205
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQKLI 168
P L Q L + D+ NN + G+ P S N G++P ++G + ++
Sbjct: 206 PD-LCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFL--QVA 262
Query: 169 YLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228
L + N G IP IG M+ L + DLS N SG +P PI+ + L +N G
Sbjct: 263 TLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIP-PILGNLTFTEKLYLHSNKLTG 321
Query: 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN 288
I P+ N++ LH+L L++NH +G +I +L +L L +++ N L G + +
Sbjct: 322 SIPPELGNMSKLHYLELNDNHLTG-----HIPPELGKLTDLFDLNVANNDLEGPIPD--H 374
Query: 289 LSSVKHLYLQKNAI-TGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
LSS +L N++ NKF G IP +L ++ L L N+++G IP EL
Sbjct: 375 LSSCTNL----NSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVEL------- 423
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
S + + LDLS+N+++G IP +G L+++ +NLS N ++G +P F NL+
Sbjct: 424 ----SRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIME 479
Query: 408 LDLSHNRLSGHIPPQLTGLN-----------------------FLSNFNVSYNNLSGPTP 444
+DLS+N +SG IP +L L L+ NVS+NNL G P
Sbjct: 480 IDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIP 539
Query: 445 DKEQFATFDESSYTGNHELCGSLIRKKC 472
F+ F S+ GN LCGS + C
Sbjct: 540 KNNNFSRFSPDSFIGNPGLCGSWLNSPC 567
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 158/495 (31%), Positives = 226/495 (45%), Gaps = 56/495 (11%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65
L NL LDL +NN G +P L NLT L+ L + N SGK+P+T LEYL
Sbjct: 141 LVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGN 200
Query: 66 NFQGTI--SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPS 122
G I I +L +L + ++ N L + S+L ++C L IP
Sbjct: 201 ELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNL---SELVRFDAANCGLTGEIPP 257
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMGIVLQKLIYL 170
+ + L L L N G SNN F G++P + L+ L L
Sbjct: 258 EIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFS-QLKNLTLL 316
Query: 171 DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
++ +N G IP IGEM EL + L NNF+G +PQ + L + DLS+N G +
Sbjct: 317 NLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENG-RLVILDLSSNKLTGTL 375
Query: 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS-FNL 289
P + L L N G + D+ L + +SL I + EN L+GS+ F L
Sbjct: 376 PPNMCSGNRLMTLITLGNFLFGSIPDS-----LGKCESLTRIRMGENFLNGSIPKELFGL 430
Query: 290 SSVKHLYLQKNAITGD-------------------NKFFGRIPYQINELSNLHVLLLRGN 330
+ + LQ N +TG+ N+ G +P I LS + LLL GN
Sbjct: 431 PKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGN 490
Query: 331 SLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNF 390
G IP E+ L+ ++ LD S N SG I EI + + + ++LS N
Sbjct: 491 KFSGSIPPEI-----------GRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNE 539
Query: 391 LSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFA 450
LSG IP + +K+ L+LS N L G IP + + L++ + SYNNLSG P QF+
Sbjct: 540 LSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFS 599
Query: 451 TFDESSYTGNHELCG 465
F+ +S+ GN LCG
Sbjct: 600 YFNYTSFVGNSHLCG 614
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 165/518 (31%), Positives = 235/518 (45%), Gaps = 63/518 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTN-LTSLEYLDRF 63
NL NL LDLSSN+F G P +N L L+VL++ N G +P++L N L + +D
Sbjct: 132 NLSNLEVLDLSSNDFSGLFPSLIN-LPSLRVLNVYENSFHGLIPASLCNNLPRIREIDLA 190
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPS 122
F G+I + + N S +E L ++S + + E + S L VL L + L + S
Sbjct: 191 MNYFDGSIPV-GIGNCSSVEYLGLASNNLSGSIPQELFQ-LSNLSVLALQNNRLSGALSS 248
Query: 123 FLLQHYHLIFLDLSNNKVVGNFP------------ICSNNNFAGKLPRNMGIVLQKLIYL 170
L + +L LD+S+NK G P +N F G++PR++ + + L
Sbjct: 249 KLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSLSNS-RSISLL 307
Query: 171 DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
+ N G I + M L DL+ N+FSG +P + C+ L + + F QI
Sbjct: 308 SLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNL-PNCLRLKTINFAKIKFIAQI 366
Query: 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLS 290
+ N L L N+ IL LK+L L F+ S V S
Sbjct: 367 PESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPS-VPSLQFK 425
Query: 291 SVKHLYLQKNAITGD------------------NKFFGRIPYQINELSNLHVLLLRGNSL 332
++K L + + G N+ G IP + L++L L L N+
Sbjct: 426 NLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTF 485
Query: 333 QGHIPNELCHVSRFLHR------------FYSNLKYMAG-------------LDLSSNEL 367
G IP+ L + + + F+ AG +DLS N L
Sbjct: 486 IGEIPHSLTSLQSLVSKENAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLSYNSL 545
Query: 368 SGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLN 427
+G I E G L+ + LNL NN LSG IP + S + E LDLSHN LSG+IPP L L+
Sbjct: 546 NGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLS 605
Query: 428 FLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCG 465
FLS F+V+YN LSGP P QF TF SS+ GN LCG
Sbjct: 606 FLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCG 643
|
Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis. Daucus carota (taxid: 4039) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 232/498 (46%), Gaps = 66/498 (13%)
Query: 4 CNLKNLF--ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
C + N F LDLS G++ +++L LK LD+S N +G++P++ NL+ LE+LD
Sbjct: 58 CGVNNSFVEMLDLSGLQLRGNV-TLISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLD 116
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
F G I + KL L + SN L V +LKVL+
Sbjct: 117 LSLNRFVGAIPVE----FGKLRGLRAFNISNNLLVG----EIPDELKVLE---------- 158
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFP------------ICSNNNFAGKLPRNMGIVLQKLIY 169
L +S N + G+ P N+ G++P +G+V +L
Sbjct: 159 -------RLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNGLGLV-SELEL 210
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
L++ N EG IP I E +L + L++N +GELP+ V C L + NN G
Sbjct: 211 LNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEA-VGICSGLSSIRIGNNELVGV 269
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289
I N++ L + D N+ SG+ I+ + S+ +L L+++ N +G++ +
Sbjct: 270 IPRTIGNISGLTYFEADKNNLSGE-----IVAEFSKCSNLTLLNLAANGFAGTIPTELG- 323
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349
+ + LQ+ ++G N FG IP NL+ L L N L G IP ELC + R +
Sbjct: 324 ---QLINLQELILSG-NSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYL 379
Query: 350 F-------------YSNLKYMAGLDLSSNELSGEIPREIGQLQNIR-ALNLSNNFLSGAI 395
N + L L N L+G IP EIG+++N++ ALNLS N L G++
Sbjct: 380 LLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSL 439
Query: 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDES 455
P L SLD+S+N L+G IPP L G+ L N S N L+GP P F S
Sbjct: 440 PPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPNS 499
Query: 456 SYTGNHELCGSLIRKKCS 473
S+ GN ELCG+ + C
Sbjct: 500 SFLGNKELCGAPLSSSCG 517
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 0 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| 255553269 | 2793 | receptor-kinase, putative [Ricinus commu | 0.938 | 0.185 | 0.395 | 1e-111 | |
| 357468869 | 703 | Receptor protein kinase-like protein [Me | 0.958 | 0.751 | 0.373 | 1e-106 | |
| 358345693 | 1011 | Receptor-like protein kinase [Medicago t | 0.967 | 0.527 | 0.360 | 1e-103 | |
| 357468861 | 1016 | Receptor-like protein kinase [Medicago t | 0.967 | 0.524 | 0.360 | 1e-103 | |
| 297743503 | 947 | unnamed protein product [Vitis vinifera] | 0.950 | 0.553 | 0.421 | 1e-100 | |
| 359483099 | 1231 | PREDICTED: probable LRR receptor-like se | 0.961 | 0.430 | 0.356 | 2e-96 | |
| 359482749 | 1067 | PREDICTED: leucine-rich repeat receptor | 0.967 | 0.499 | 0.355 | 5e-96 | |
| 357468847 | 694 | Receptor protein kinase-like protein [Me | 0.949 | 0.753 | 0.384 | 3e-94 | |
| 297743510 | 1188 | unnamed protein product [Vitis vinifera] | 0.909 | 0.421 | 0.363 | 1e-93 | |
| 359482725 | 1144 | PREDICTED: leucine-rich repeat receptor | 0.967 | 0.465 | 0.346 | 3e-93 |
| >gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 268/677 (39%), Positives = 364/677 (53%), Gaps = 160/677 (23%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+G+C LK+L EL LS N F G +PQCL+NLT+L+VLD+++N+ SG + S ++ LTSL+YL
Sbjct: 1205 VGLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYL 1264
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE--TWHPTSQLKVLKLSDCHLH 118
F+G S +SLANH KLE+ +SSGS ML+++TE W PT QLKV+ L +C+L+
Sbjct: 1265 FLSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLN 1324
Query: 119 V----IPSFLLQHYHLIFLDLSNNKVVGNFP----------------------------- 145
+ IPSFLL + L F+DLS+N ++G FP
Sbjct: 1325 LRTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSY 1384
Query: 146 -------ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSR 198
S+N+ AG++P+++G++L L YL+M N FEG+IP SI +M+ L + DLS
Sbjct: 1385 RHELINLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSN 1444
Query: 199 NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMD--- 255
N FSGELP+ ++S L LSNNNF G+IFP+ MNL L L ++NN+FSGK+D
Sbjct: 1445 NYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDF 1504
Query: 256 ----------------DANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQK 299
I +QL L S+E++D+ EN G++ S FN SS+++L+LQK
Sbjct: 1505 FYCPRLSVLDISKNKVAGVIPIQLCNLSSVEILDLSENRFFGAMPSCFNASSLRYLFLQK 1564
Query: 300 NAITG------------------DNKFFGRIPY------------------------QIN 317
N + G +NKF G IP Q+
Sbjct: 1565 NGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWISQLSELHVLLLGGNALGGHIPNQLC 1624
Query: 318 ELSNLHVLLLRGNSLQGHIPNELCHVS--------------------------------- 344
+L NL ++ L N L G IP+ ++S
Sbjct: 1625 QLRNLKIMDLSHNLLCGSIPSCFHNISFGSMVEESFSSSSIGVAMASHYDSYAYYKATLE 1684
Query: 345 -----------------RFLHRFYSN------LKYMAGLDLSSNELSGEIPREIGQLQNI 381
F+ ++ N + MAG+DLS NEL GEIP EIG +Q I
Sbjct: 1685 LDLPGLLSWSSSSEVQVEFIMKYRYNSYKGSVINLMAGIDLSRNELRGEIPSEIGDIQEI 1744
Query: 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441
R+LNLS N LSG+IP SFSNLK ESLDL +N LSG IP QL LNFL F+VSYNNLSG
Sbjct: 1745 RSLNLSYNHLSGSIPFSFSNLKNLESLDLRNNSLSGEIPTQLVELNFLGTFDVSYNNLSG 1804
Query: 442 PTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMIDMVALK 501
+K QF TFDESSY GN ELCG LI + C++ P +P+ + +EED+ IDM
Sbjct: 1805 RILEKGQFGTFDESSYKGNPELCGDLIHRSCNTEATTPPSPSPDV-DEEDEGPIDMFWFY 1863
Query: 502 WSFGASFVTVILGLFAV 518
WSF AS+V FA+
Sbjct: 1864 WSFCASYVIAFEMEFAM 1880
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 257/689 (37%), Positives = 354/689 (51%), Gaps = 161/689 (23%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+C LK+L ELD+S N F +P+CL+NLT+L VL++S N SG PS ++NLTSL YL
Sbjct: 3 GLCKLKDLVELDISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLS 62
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTET--WHPTSQLKVLKLSDCHLH- 118
F QG+ S+++LANHS L+ L ISS S ++TE W P QLK L L +C+L+
Sbjct: 63 LFGNYMQGSFSLSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNK 122
Query: 119 ----VIPSFLLQHYHLIFLDLSNNKVVGNFPI-----------CSNNNFAGKLPRNMGIV 163
VIP+FL Y LI +DLS+NK+VG FP S N+ +G LP+++GI
Sbjct: 123 DKGSVIPTFLSYQYSLILMDLSSNKLVGLFPRWFIHSSMKYLDISINSLSGFLPKDIGIF 182
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
L + Y++ N FEG+IP SIG+MK+L DLS N+FSGELP+ + +GC L LSN
Sbjct: 183 LPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGELPKQLATGCDNLQYLKLSN 242
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDA-------------------------- 257
N G I PK+ N ++ +L+L+NN+FSG ++D
Sbjct: 243 NFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFLSISNNSFSGTIPSSIG 301
Query: 258 ------------NIL-----VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
NIL +++S + SL+++D+ +N L GS+ L+ ++ LYLQKN
Sbjct: 302 TFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIGSIPKLSGLTVLRFLYLQKN 361
Query: 301 AIT------------------------------------------GDNKFFGRIPYQINE 318
++ G NK G IP Q+
Sbjct: 362 NLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELRVLLLGGNKLEGDIPIQLCR 421
Query: 319 LSNLHVLLLRGNSLQGHIPN---------------------------------------- 338
L + ++ L N L IP+
Sbjct: 422 LKKIDIMDLSRNMLNASIPSCFRNMSFGMRQYVDDDDGPTFEFSISGYLPTISFNASLSI 481
Query: 339 -------------ELCHVSRFLHRFYSN--LKYMAGLDLSSNELSGEIPREIGQLQNIRA 383
E+ ++ FY L+ M GLDLS N L+G IP +IG LQ +RA
Sbjct: 482 QPPWSLFNEDLQFEVEFRTKHYEYFYKGKVLENMTGLDLSWNNLTGLIPSQIGHLQQVRA 541
Query: 384 LNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443
LNLS+N LSG IP +FSNL ESLDLS+N LSG IP +LT LNFLS FNVSYNN SG
Sbjct: 542 LNLSHNHLSGPIPITFSNLTQIESLDLSYNNLSGKIPNELTQLNFLSTFNVSYNNFSGTP 601
Query: 444 PDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMIDMVALKWS 503
P QF FDE SY GN LCG L+ +KC P++ + + GE+E +M+DM+ WS
Sbjct: 602 PSTGQFGGFDEDSYRGNPGLCGPLLYQKCERVESSPSSQSNDNGEKE--TMVDMITFYWS 659
Query: 504 FGASFVTVILGLFAVLWINSYWRRRWYVF 532
F AS++T++L VL +N WR W+ +
Sbjct: 660 FTASYITILLAFITVLCVNPRWRMAWFYY 688
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 253/702 (36%), Positives = 368/702 (52%), Gaps = 169/702 (24%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+CN K+L ELD+S N F +P CL+NLT+L+VL++SNN SG PS ++NLTSL YL
Sbjct: 268 GLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLS 327
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNM-LQVKTE--TWHPTSQLKVLKLSDCHLH 118
+ QG+ S+++LANHS LEVL ISS +N+ + ++TE W P QLK L + +C+L+
Sbjct: 328 FYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLN 387
Query: 119 -----VIPSFLLQHYHLIFLDLSNNKVVGNFPI-------------CSNNNFAGKLPRNM 160
VIP+FL Y+L++L LS+N + G+ P SNNN +G LP+++
Sbjct: 388 KDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHNDDMIYLDISNNNLSGLLPKDI 447
Query: 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFD 220
GI L + YL+ N FEG+IP SIG+MK+L + D S+N+FSGELP+ + +GC L
Sbjct: 448 GIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLK 507
Query: 221 LSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDD------------------------ 256
LSNN G I P++ N ++ L+L+NN+FSG ++D
Sbjct: 508 LSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPS 566
Query: 257 -------------------ANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYL 297
I +++S + L+++D+ +N L+GS+ L+ ++ LYL
Sbjct: 567 SIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYL 626
Query: 298 QKNAITG------------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
Q+N ++G +NKF G+IP +++ S L VLLL GN+ +G IP +
Sbjct: 627 QENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQ 686
Query: 340 LCHVSR------------------FLHRFYSNLKYM-AGLDLSS---------------N 365
LC + + F + + +Y+ A DLSS +
Sbjct: 687 LCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDS 746
Query: 366 ELSGEIPREIGQ-------------------------LQNIRALNLSNNFLSGAIPE--- 397
LS ++P E Q L+N+ L+LS N L+G IP
Sbjct: 747 SLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIG 806
Query: 398 ---------------------SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSY 436
+FSNL ESLDLS+N LSG IP +LT LNFLS FNVSY
Sbjct: 807 DLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSY 866
Query: 437 NNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMID 496
NNLSG P QFA FDE +Y GN LCG L+ +KC PP++ + + EE+++ +D
Sbjct: 867 NNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSND--NEEEETGVD 924
Query: 497 MVALKWSFGASFVTVILGLFAVLWINSYWRRRW-YVFAKILN 537
M+ WSF AS++T++L VL IN WR W Y +K +N
Sbjct: 925 MITFYWSFTASYITILLAFITVLCINPRWRMAWFYYISKFMN 966
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 253/702 (36%), Positives = 368/702 (52%), Gaps = 169/702 (24%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+CN K+L ELD+S N F +P CL+NLT+L+VL++SNN SG PS ++NLTSL YL
Sbjct: 268 GLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLS 327
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNM-LQVKTE--TWHPTSQLKVLKLSDCHLH 118
+ QG+ S+++LANHS LEVL ISS +N+ + ++TE W P QLK L + +C+L+
Sbjct: 328 FYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLN 387
Query: 119 -----VIPSFLLQHYHLIFLDLSNNKVVGNFPI-------------CSNNNFAGKLPRNM 160
VIP+FL Y+L++L LS+N + G+ P SNNN +G LP+++
Sbjct: 388 KDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHNDDMIYLDISNNNLSGLLPKDI 447
Query: 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFD 220
GI L + YL+ N FEG+IP SIG+MK+L + D S+N+FSGELP+ + +GC L
Sbjct: 448 GIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLK 507
Query: 221 LSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDD------------------------ 256
LSNN G I P++ N ++ L+L+NN+FSG ++D
Sbjct: 508 LSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPS 566
Query: 257 -------------------ANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYL 297
I +++S + L+++D+ +N L+GS+ L+ ++ LYL
Sbjct: 567 SIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYL 626
Query: 298 QKNAITG------------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
Q+N ++G +NKF G+IP +++ S L VLLL GN+ +G IP +
Sbjct: 627 QENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQ 686
Query: 340 LCHVSR------------------FLHRFYSNLKYM-AGLDLSS---------------N 365
LC + + F + + +Y+ A DLSS +
Sbjct: 687 LCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDS 746
Query: 366 ELSGEIPREIGQ-------------------------LQNIRALNLSNNFLSGAIPE--- 397
LS ++P E Q L+N+ L+LS N L+G IP
Sbjct: 747 SLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIG 806
Query: 398 ---------------------SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSY 436
+FSNL ESLDLS+N LSG IP +LT LNFLS FNVSY
Sbjct: 807 DLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSY 866
Query: 437 NNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMID 496
NNLSG P QFA FDE +Y GN LCG L+ +KC PP++ + + EE+++ +D
Sbjct: 867 NNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSND--NEEEETGVD 924
Query: 497 MVALKWSFGASFVTVILGLFAVLWINSYWRRRW-YVFAKILN 537
M+ WSF AS++T++L VL IN WR W Y +K +N
Sbjct: 925 MITFYWSFTASYITILLAFITVLCINPRWRMAWFYYISKFMN 966
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743503|emb|CBI36370.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 243/577 (42%), Positives = 343/577 (59%), Gaps = 53/577 (9%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEYL 60
G C L L ELDLS N F+G +P CLNN T L++LD+S N SG + S L NLTSLEY+
Sbjct: 357 GFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDLSANLFSGNLSSPLLPNLTSLEYI 416
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE---TWHPTSQLKVLKLSDCHL 117
D F+G+ S +S ANHSKL+V+++ S +N +V+TE W P QLKVL LS C L
Sbjct: 417 DLSYNQFEGSFSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKVLSLSSCKL 476
Query: 118 HV-IPSFLLQHYHLIFLDLSNNKVVGNFP------------------------------- 145
+P FL + L+ +DLS+N + G+FP
Sbjct: 477 TGDLPGFLQYQFRLVRVDLSHNNLTGSFPNWLLANNTRLEFLVLRNNSLMGQLLPLRPTT 536
Query: 146 -----ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNN 200
S+N G+L N+ ++ ++ L++ N FEG +P SI EM L + DLS NN
Sbjct: 537 RISSLDISHNQLDGQLQENVAHMIPHIMSLNLSNNGFEGILPSSIAEMISLRVLDLSANN 596
Query: 201 FSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANIL 260
FSGE+P+ +++ L++ LSNN F G+IF + NLT + L L NN F+G + +N++
Sbjct: 597 FSGEVPKQLLA-TKRLEILKLSNNKFHGEIFSRDFNLTWVEVLCLGNNQFTGTL--SNVI 653
Query: 261 VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELS 320
+ S L LE +D+ +N+LSGSL S NL ++KHL+LQ N T IP S
Sbjct: 654 SKNSWLSGLEFLDVSQNALSGSLPSLKNLLNLKHLHLQGNMFTR------LIPRDFLNSS 707
Query: 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSN--LKYMAGLDLSSNELSGEIPREIGQL 378
NL L +R NS +E+ V++ Y L++M+GLDLS N L+GEIP E+G L
Sbjct: 708 NLLTLDIRENSPIYKETDEVEFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGML 767
Query: 379 QNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438
+I ALNLS+N L+G+IP+SFSNL ESLDLS+N+L G IP +L LNFL F+V+YNN
Sbjct: 768 SSIHALNLSHNQLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNN 827
Query: 439 LSGPTPD-KEQFATFDESSYTGNHELCGSLIRKKCSSALKPPATPTEEAGEEEDDSMIDM 497
+SG P+ K QF TFDES+Y GN LCG L+++KC+++++ P P++ E I+
Sbjct: 828 ISGRVPNTKAQFGTFDESNYEGNPFLCGELLKRKCNTSIESPCAPSQSFKSEAKWYDINH 887
Query: 498 VALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAK 534
V SF S++ ++LG +L+IN YWR RW+ F +
Sbjct: 888 VVFFASFTTSYIMILLGFVTMLYINPYWRHRWFNFIE 924
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 255/715 (35%), Positives = 358/715 (50%), Gaps = 185/715 (25%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL-EYL 60
G C L L ELDL+SN F+G +P CLNNLT L++LD+S+N SG V S+L + EY+
Sbjct: 312 GFCQLNKLQELDLNSNFFQGILPPCLNNLTSLRLLDLSHNLFSGNVSSSLLPSLTSLEYI 371
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE---TWHPTSQLKVLKLSDCHL 117
D F+G S NS ANHS L+V++ S +N +++TE W P QLKVL LS+ L
Sbjct: 372 DLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKFEIETEYPVGWVPLFQLKVLVLSNYKL 431
Query: 118 -HVIPSFLLQHYHLIFLDLSNNKVVGNFP------------------------------- 145
P FL + L +DLS+N + G+FP
Sbjct: 432 IGDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLENNTRLEYLVLRNNSLMGQLLPLRPNS 491
Query: 146 -----ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNN 200
S+N G+L +N+ ++ + +L++ N FEG +P SI EM L+ DLS N+
Sbjct: 492 RITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMSSLWSLDLSANS 551
Query: 201 FSGELPQPIVSGCVALDL--FDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGK----- 253
FSGE+P+ ++ VA DL LSNN F G+IF + NLT L +L+LDNN F G
Sbjct: 552 FSGEVPKQLL---VAKDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQFKGTLSNVI 608
Query: 254 --------------------------MDDANILV------------QLSQLKSLELIDIF 275
M D LV ++SQL+ LE +D+
Sbjct: 609 SRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQLQRLEFLDVS 668
Query: 276 ENSLSGSLVSSFNLSSVKHLYLQKNAITG------------------DNKFFGRIPYQIN 317
+N+LSGSL S ++ +KHL+LQ N TG DN+ FG IP I+
Sbjct: 669 QNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNRLFGSIPNSIS 728
Query: 318 E------------------------LSNLHVLLLRGNSLQGHIPNELCHVS--------- 344
L+ + ++ L N+ G IP H+
Sbjct: 729 RLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHIQFGDFKTEHN 788
Query: 345 -------------------------------------RFLHRFYSN------LKYMAGLD 361
F+ + SN L +M+GLD
Sbjct: 789 VYKPMFNPYSFFSIYTGYLVKYLFFSTEAHRDEVDEVEFVTKNRSNSYGGGILDFMSGLD 848
Query: 362 LSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421
LS N L+GEIPRE+G L +I ALNLS+N L G++P+SFS L ESLDLS+N+LSG IPP
Sbjct: 849 LSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKSFSKLSQIESLDLSYNKLSGEIPP 908
Query: 422 QLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLIRKKCSSALKPPA 480
+ GLNFL FNV++NN+SG PD KEQF TF ESSY N LCG ++++KC+++++ P
Sbjct: 909 EFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESSYEDNPFLCGPMLKRKCNTSIESPN 968
Query: 481 TPTEEAGEEEDDSM-IDMVALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAK 534
+P++ + E E ID V SF AS++ ++LG A+L+IN YWR+RW+ F +
Sbjct: 969 SPSQPSQESEAKWYDIDHVVFFASFVASYIMILLGFAAILYINPYWRQRWFNFIE 1023
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 254/715 (35%), Positives = 359/715 (50%), Gaps = 182/715 (25%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEY 59
+G C L L ELDLS N F+G +P CLNNLT L++LD+S+N LSG + S L NLTSLEY
Sbjct: 331 VGFCQLNKLQELDLSYNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLLPNLTSLEY 390
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE---TWHPTSQLKVLKLSDCH 116
+D +F+G+ S +S ANHSKL+V+++ S +N +V+TE W P QLK L LS+C
Sbjct: 391 IDLSYNHFEGSFSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKALFLSNCK 450
Query: 117 LHV-IPSFLLQHYHLIFLDLSNNKVVGNF--------------------------PI--- 146
L IP FL + L +DLS+N + G F P+
Sbjct: 451 LTGDIPDFLQYQFKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLMGQLLPLRPN 510
Query: 147 -------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRN 199
S+N G+L N+G ++ +++L++ N FEG +P SI EM L + DLS N
Sbjct: 511 TRILSLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSAN 570
Query: 200 NFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGK------ 253
NFSGE+P+ +++ L + LS N F G+IF + N+T L LYLDNN F G
Sbjct: 571 NFSGEVPKQLLA-TKDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVIS 629
Query: 254 -------------------------MDDANILV------------QLSQLKSLELIDIFE 276
M + LV ++SQL+ ++ +D+ +
Sbjct: 630 GSSQLMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQLQQMKFLDVSQ 689
Query: 277 NSLSGSLVSSFNLSSVKHLYLQKNAITG------------------DNKFFGRI------ 312
N+LSGSL S ++ ++HL+LQ N TG DN+ FG I
Sbjct: 690 NALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSISA 749
Query: 313 ------------------PYQINELSNLHVLLLRGNSLQGHIP----------------- 337
P + L+ + ++ L NS G IP
Sbjct: 750 LLELRILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDIRFGEMKKENDV 809
Query: 338 -----------------------------------NELCHVSRFLHRFYSN--LKYMAGL 360
NE+ V++ H YS L +M GL
Sbjct: 810 FRQFIDFGYGGDSRNLYVGFTVKKWEFDSDVYDEKNEVEFVTKNRHDSYSGDILNFMFGL 869
Query: 361 DLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420
DLS N L+GEIP ++G+L I ALNLS+N L +IP+SFSNL ESLDLS+N+LSG IP
Sbjct: 870 DLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIESLDLSYNKLSGEIP 929
Query: 421 PQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLIRKKCSSALKPP 479
+L LNFL F+V+YNN+SG PD K QF TFDE SY GN LCG+L+++KC+++++PP
Sbjct: 930 LELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGTLLKRKCNTSIEPP 989
Query: 480 ATPTEEAGEEEDDSMIDMVALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAK 534
P++ E I+ V SF S++ ++LG +L+IN YWR RW+ F +
Sbjct: 990 CAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIE 1044
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468847|ref|XP_003604708.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505763|gb|AES86905.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 254/661 (38%), Positives = 349/661 (52%), Gaps = 138/661 (20%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+CNLK+L ELD+S N F P+CL+NLT+L+VL++SNN SGK PS ++NLTSL YL
Sbjct: 32 GLCNLKDLVELDISQNMFSAKFPECLSNLTNLRVLELSNNLFSGKFPSFISNLTSLAYLS 91
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNM-LQVKTE--TWHPTSQLKVLKLSDCHLH 118
+ QG+ S+++LANHS LEVL ISS +N+ + ++TE W P QLK L L +C+L+
Sbjct: 92 FYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLILRNCNLN 151
Query: 119 -----VIPSFLLQHYHLIFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMG 161
VIP+FL Y+L+ +DLS NK+VG+ P SNNN +G L ++
Sbjct: 152 KDKGSVIPTFLSYQYNLMLVDLSGNKIVGSSPSWLIHNHNINYLDISNNNLSGLLTKDFD 211
Query: 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDL 221
+ L L+ N FEG+IP SIG++K+L + DLS N+FSGELP+ + + +L +
Sbjct: 212 LFLPSATQLNFSWNSFEGNIPSSIGKIKKLLLLDLSHNHFSGELPKQLATDSDSLLYLSV 271
Query: 222 SNNNFFGQIFPKYMNL-----------------------THLHWLYLDNNHFSGKMDDAN 258
S+N G I PK+ NL T L +L + NN FSG + +
Sbjct: 272 SDNFLSGNI-PKFCNLGMKNLFLNNNNFSGTLEDVLGNNTELAFLSISNNSFSGTIPSS- 329
Query: 259 ILVQLSQLKSLELIDIFENSLSGSLVSSF---------NLSSVKHLYLQKNAITG----- 304
+ ++E++ + EN L G + F +LSS + LYLQKN ++G
Sbjct: 330 ----IGTFSNMEVLIMSENLLEGEIPIEFSNMFSLEMLDLSSKQFLYLQKNDLSGSIPIE 385
Query: 305 -------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF----- 346
+NKF G+IP I+ LS L VLLL N+L+G IP +LC + +
Sbjct: 386 LSESSKLQLLDLRENKFSGKIPNWIDNLSELRVLLLGWNNLEGDIPIQLCRLKKINMMDL 445
Query: 347 --------LHRFYSNLKYMAG--------------------------------------- 359
+ + NL + G
Sbjct: 446 SRNMFNASIPSCFQNLTFGIGQYNDGPIFVISISLTQDIPNGFRTKHNDYFYKGKVLEKM 505
Query: 360 --LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417
LDLS N+L+G IP +IG LQ + ALNLS+N LSG IP +FSNL ESLDLS+N LSG
Sbjct: 506 TGLDLSCNKLTGTIPSQIGHLQQVLALNLSHNHLSGPIPITFSNLTEIESLDLSYNNLSG 565
Query: 418 HIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALK 477
IP +LT L FLS FNVSYNNLSG P QFATF E SY GN LCGSL+ +KC
Sbjct: 566 KIPYELTQLTFLSTFNVSYNNLSGTPPSTGQFATFVEDSYRGNPGLCGSLLDRKCEGVKS 625
Query: 478 PPATPTEEAGEEEDDSMIDMVALKWSFGASF-VTVILGLFAVLW-----INSYWRRRWYV 531
P++ + + EEE + +DM+ W F F ++ + LW I SY + V
Sbjct: 626 SPSSQSNDNEEEETN--VDMITFYWRFLHDFRLSCFASFYYGLWPSLIGIASYIPVNFCV 683
Query: 532 F 532
F
Sbjct: 684 F 684
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743510|emb|CBI36377.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 239/657 (36%), Positives = 342/657 (52%), Gaps = 156/657 (23%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPST-LTNLTSLEYL 60
G C L L ELDLS N F+G +P CLNN T L++LD+S+N SG S L NLTSLEY+
Sbjct: 541 GFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDLSSNLFSGNFSSPLLRNLTSLEYI 600
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE---TWHPTSQLKVLKLSDCHL 117
D S F+G+ S +S ANHSKL+V+++ +N +V+TE W P QLK+L LS C L
Sbjct: 601 DLSSNQFEGSFSFSSFANHSKLQVVILGRDNNKFEVETEYPVGWVPLFQLKILSLSSCKL 660
Query: 118 HV-IPSFLLQHYHLIFLDLSNNKVVGNFPI------------------------------ 146
+P FL + L+ +D+S+N + G+FP
Sbjct: 661 TGDLPGFLQYQFRLVGVDISHNNLTGSFPYWLLENNTRLESLVLRNNSLMGQLLPLGPNT 720
Query: 147 ------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNN 200
S+N G+L N+ ++ +++L++ N FEG +P SI E++ L++ DLS NN
Sbjct: 721 RINSLDISHNQLDGQLQENVAHMIPNIMFLNLSNNGFEGILPSSIAELRALWILDLSTNN 780
Query: 201 FSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNL--------------THLHWLYLD 246
FSGE+P+ +++ L + LSNN F G+IF + NL T L L L
Sbjct: 781 FSGEVPKQLLA-TKDLGILKLSNNKFHGEIFSRDFNLTGLLCEIPSQIGNMTDLTTLVLG 839
Query: 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG-- 304
NN+F GK+ +++SQL+ +E +D+ +N+ SGSL S ++ ++HL+LQ N TG
Sbjct: 840 NNNFKGKLP-----LEISQLQRMEFLDVSQNAFSGSLPSLKSMEYLEHLHLQGNMFTGLI 894
Query: 305 ----------------DNKFFGRIPYQIN------------------------ELSNLHV 324
+N+ FG IP I+ L+ + +
Sbjct: 895 PRDFLNSSNLLTLDIRENRLFGSIPNSISALLKLRILLLGGNLLSGFIPNHLCHLTEISL 954
Query: 325 LLLRGNSLQGHIPNELCH------------------------VSRFLHRFYSN--LKYMA 358
+ L NS G IP H V++ FY L++M+
Sbjct: 955 MDLSNNSFSGPIPKCFGHIRFGEMKKEDNVFGQFIEFGFGMFVTKNRSDFYKGGILEFMS 1014
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
GLDLS N L+GEIP E+G L IRALNLS+N L+G+IP+SFSNL ESLDLS+N+L G
Sbjct: 1015 GLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLDLSYNKLGGE 1074
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLIRKKCSSALK 477
IP +L LNFL F+V+YNN SG PD K QF TFDE SY GN LCG L+++KC++++
Sbjct: 1075 IPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKCNTSID 1134
Query: 478 PPATPTEEAGEEEDDSMIDMVALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAK 534
F S++ ++LG +L+IN YWR RW+ F +
Sbjct: 1135 --------------------------FTTSYIMILLGFAIILYINPYWRHRWFNFIE 1165
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 247/713 (34%), Positives = 353/713 (49%), Gaps = 180/713 (25%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEY 59
+G C L L ELD+S N F+G +P CLNNLT L++LD+S N SG + S L NLTSLEY
Sbjct: 410 IGFCQLNKLQELDISYNLFQGILPPCLNNLTSLRLLDLSANLFSGNLSSPLLPNLTSLEY 469
Query: 60 LDRFSINFQGTISINSLANHSKLEVLL----------ISSGSNMLQVKTE---TWHPTSQ 106
++ F+G+ S +S ANHSKL+V++ + +N +V+TE W P Q
Sbjct: 470 INLSYNQFEGSFSFSSFANHSKLQVVILGRYNNIFEEVGGDNNKFEVETEYPVGWVPLFQ 529
Query: 107 LKVLKLSDCHLHV-IPSFLLQHYHLIFLDLSNNKVVGNFP-------------------- 145
LK L LS C L + FL + L+ +DLS+N + G+FP
Sbjct: 530 LKALFLSSCKLTGDLLGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSL 589
Query: 146 ----------------ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189
S+N G+L N+ ++ +I L++ N FEG +P SI E++
Sbjct: 590 MGQLLPLGRNTRIDSLDISHNQLDGQLQENVAHMIPNIISLNLSNNGFEGILPSSIAELR 649
Query: 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNH 249
L DLS NNFSGE+P+ +++ L++ LSNN F G+IF + NLT L +LYL NN
Sbjct: 650 ALRSLDLSTNNFSGEVPKQLLAA-KDLEILKLSNNKFHGEIFSRDFNLTWLEYLYLGNNQ 708
Query: 250 FSGK-------------------------------MDDANILV------------QLSQL 266
F+G M D LV ++SQL
Sbjct: 709 FTGTLSNVICRSFRLKVLDVSNNYMSGEIPSQIGNMTDLTTLVLGNNNFKGKLPPEISQL 768
Query: 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG------------------DNKF 308
+ +E +D+ +N+LSGSL S ++ ++HL+LQ N TG +N+
Sbjct: 769 QRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENRL 828
Query: 309 FGRIPYQIN------------------------ELSNLHVLLLRGNSLQGHIPNELCHV- 343
FG IP I+ L+ + ++ L NS G IP H+
Sbjct: 829 FGSIPNSISALLKLRILLLGGNLLSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGHIR 888
Query: 344 ----------------------SRFLHRFYSN-------------------LKYMAGLDL 362
S ++ Y+ L++M+GLDL
Sbjct: 889 FGEMKKEDNVFEQFIESGYGFNSHIVYAVYNEKDEVEFVTKNRRDSYKGGILEFMSGLDL 948
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422
S N L+GEIP E+G L I ALNLS+N L+G+IP+ FSNL ESLDLS+N+LSG IP +
Sbjct: 949 SCNNLTGEIPHELGMLSWIHALNLSHNQLNGSIPKGFSNLSQIESLDLSYNKLSGEIPLE 1008
Query: 423 LTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLIRKKCSSALKPPAT 481
L LNFL F+V+YNN SG PD K QF TFDE SY GN LCG L+++KC+++++ P
Sbjct: 1009 LVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKCNTSIESPCA 1068
Query: 482 PTEEAGEEEDDSMIDMVALKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAK 534
P++ E I+ V SF S++ ++LG +L+IN YWR RW+ F +
Sbjct: 1069 PSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIE 1121
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.744 | 0.451 | 0.334 | 1.6e-44 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.925 | 0.572 | 0.325 | 7.5e-61 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.751 | 0.424 | 0.355 | 7.8e-49 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.789 | 0.435 | 0.344 | 1.5e-53 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.745 | 0.439 | 0.368 | 4.8e-53 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.778 | 0.444 | 0.350 | 2.4e-51 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.784 | 0.398 | 0.327 | 4e-49 | |
| TAIR|locus:2054421 | 890 | AT2G41820 [Arabidopsis thalian | 0.798 | 0.494 | 0.325 | 1.2e-44 | |
| TAIR|locus:2091353 | 1016 | AT3G28040 [Arabidopsis thalian | 0.827 | 0.448 | 0.313 | 3.8e-44 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.803 | 0.432 | 0.314 | 3.9e-44 |
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 1.6e-44, P = 1.6e-44
Identities = 150/449 (33%), Positives = 213/449 (47%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
C +KNL ELDL NF G +P C NL L+ LD+S+NQL+G +P + ++L SLEYL
Sbjct: 217 CEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLS 276
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTE-TWHPTSQLKVLKLSDCHLHVIPS 122
+F+G S+N L N +KL+V + SS +M+QVK E TW P QL VL L C L IP+
Sbjct: 277 DNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPN 336
Query: 123 FLLQHYHLIFLDLSNNKVVGNFP--ICSNNNFAG--KLPRNMGIVLQ------KLIYLDM 172
FL+ +L +DLS N++ G P + NN +L N + Q L LD
Sbjct: 337 FLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDF 396
Query: 173 PKNIFEGDIPYSIGE-MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231
+N G P + G + L + S N F G P + + DLS NN G++
Sbjct: 397 SENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSM-GEMYNISFLDLSYNNLSGELP 455
Query: 232 PKYMNLTH-LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXX 290
+++ L L L +N FSG + L + + SL ++ I
Sbjct: 456 QSFVSSCFSLSILQLSHNKFSG-----HFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTL 510
Query: 291 XXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR----F 346
+ N N G +P + L+ L L GN L G +P+ HVS F
Sbjct: 511 VDLCILDMSN-----NFLEGELPPLLLVFEYLNFLDLSGNLLSGALPS---HVSLDNVLF 562
Query: 347 LHR--FYSNLK--YMAG---LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399
LH F + ++ LDL +N+LSG IP+ + Q+I L L N L+G IP +
Sbjct: 563 LHNNNFTGPIPDTFLGSIQILDLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIPSTL 621
Query: 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNF 428
LDLS N+L+G IP L+F
Sbjct: 622 CEFSKMRLLDLSDNKLNGFIPSCFNNLSF 650
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 7.5e-61, P = 7.5e-61
Identities = 177/543 (32%), Positives = 261/543 (48%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNN-LTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
++ L LDLS NNF +P+ + L L+ L++SNN+ G +PS++ + ++E++D
Sbjct: 347 MRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSY 406
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
NF G + N L L +S + ++ TS + ++ ++ IP L
Sbjct: 407 NNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTL 466
Query: 125 LQHYHLIFLDLSNNKVVGNFPI-----------CSNNNFAGKLPRNMGIVLQKLIYLDMP 173
L L +DLSNN + G P SNN G +P ++ + L LD+
Sbjct: 467 LNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVLRISNNRLQGAIPPSL-FNIPYLWLLDLS 525
Query: 174 KNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK 233
N G +P Y+ DL NN +G +P + G L L DL NN G I P
Sbjct: 526 GNFLSGSLPLR-SSSDYGYILDLHNNNLTGSIPDTLWYG---LRLLDLRNNKLSGNI-PL 580
Query: 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLE-----LIDIFEXXXXXXXXXXXX 288
+ + + + L N+ +GK+ L LS ++ L+ L +
Sbjct: 581 FRSTPSISVVLLRENNLTGKIPVE--LCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGG 638
Query: 289 XXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348
+ + ++ + + + Y+ +S+ L S+ ++ E R+
Sbjct: 639 HSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSL---DYSVDFNVQVEFAVKQRYDL 695
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
L M GLDLSSNELSG IP E+G L+ +R+LNLS N LSG+IP SFSNL+ ESL
Sbjct: 696 YMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESL 755
Query: 409 DLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468
DLS N+L G IP QLT L L FNVSYNNLSG P +QF TF E SY GN LCGS
Sbjct: 756 DLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPT 815
Query: 469 RKKCSSALKXXXXXXXXXXXXXDDS-MIDMVALKWSFGASFVTVILGLFAVLWINSYWRR 527
++ C D+S ++D+V L WS G ++VTV++G L +S WRR
Sbjct: 816 KRSCGGT----TISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRR 871
Query: 528 RWY 530
W+
Sbjct: 872 AWF 874
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 164/461 (35%), Positives = 237/461 (51%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
C +KNL +LDL N FEG +P CL NL L+VLD+S+NQLSG +P++ +L SLEYL
Sbjct: 257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLS 316
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVIPS 122
NF+G S+N LAN +KL+V +SS S MLQV+TE+ W P QL V L C L IP+
Sbjct: 317 DNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPN 376
Query: 123 FLLQHYHLIFLDLSNNKVVGNFP--ICSNNNFAG--KLPRNMGIVLQ------KLIYLDM 172
FL+ +L +DLS+N++ G+ P + NN +L N + Q KL LD
Sbjct: 377 FLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDF 436
Query: 173 PKNIFEGDIPYSIGEM--KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
N G +P +IG + + L+M S N F G LP + + DLS NNF G++
Sbjct: 437 SANDITGVLPDNIGHVLPRLLHMNG-SHNGFQGNLPSSM-GEMNDISFLDLSYNNFSGEL 494
Query: 231 FPKYMNLT---HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXX 287
P+ + LT L L L +N FSG + + +Q ++L SL ++ +
Sbjct: 495 -PRSL-LTGCFSLITLQLSHNSFSGPI----LPIQ-TRLTSLIVLRMHNNLFTGEIGVGL 547
Query: 288 XXXXXKHLYLQKNAITGDNKFFGRIPYQIN-ELSNLHVLLLRGNSLQGHIPNELCHVSRF 346
++ N N+ G I I + S+L +LLL N L+G +P L +
Sbjct: 548 RTLVNLSIFDASN-----NRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAI--- 599
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMT 405
H +L + LDLS N LSG++P + + I+ L NN +G +P + L+
Sbjct: 600 -H----HLNF---LDLSGNLLSGDLPSSVVNSMYGIKIF-LHNNSFTGPLPVTL--LENA 648
Query: 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK 446
LDL +N+LSG IP Q + + NNL+G P K
Sbjct: 649 YILDLRNNKLSGSIP-QFVNTGKMITLLLRGNNLTGSIPRK 688
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 167/485 (34%), Positives = 241/485 (49%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G C KN+ EL LS+N G P CL +LT L+VLD+S+NQL+G VPS L NL SLEYL
Sbjct: 253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLS 312
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVI 120
F NF+G S+ LAN SKL+VL + S SN L+V+ ET W P QL V+ L C+L +
Sbjct: 313 LFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKV 372
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFP-------------ICSNNNFAG-KLPRNMGIVLQK 166
P FLL L +DLS+N++ GNFP + NN+F +LP++
Sbjct: 373 PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSFQLPKSA----HN 428
Query: 167 LIYLDMPKNIFEGDIPYSIGE-MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN 225
L++L++ N F + G + L +L+ N F G LP + +++ DLS+N
Sbjct: 429 LLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSL-DNMKSIEFLDLSHNR 487
Query: 226 FFGQIFPKYMN-LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXX 284
F G++ +++ +L L L +N SG+ + + + L ++ +
Sbjct: 488 FHGKLPRRFLKGCYNLTILKLSHNKLSGE-----VFPEAANFTRLWVMSMDNNLFTGNIG 542
Query: 285 XXXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344
++ N NK G IP I E L L L N L+G IP L
Sbjct: 543 KGFRSLPSLNVLDISN-----NKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSL---- 593
Query: 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKM 404
F N+ Y+ LDLSSN LSG+IP + + + L L NN LSG IP++ L
Sbjct: 594 -----F--NISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTL--LLN 644
Query: 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYT--GNHE 462
LDL +NRLSG++P + N +S + NN +G P QF + N++
Sbjct: 645 VIVLDLRNNRLSGNLPEFINTQN-ISILLLRGNNFTGQIP--HQFCSLSNIQLLDLSNNK 701
Query: 463 LCGSL 467
GS+
Sbjct: 702 FNGSI 706
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 4.8e-53, P = 4.8e-53
Identities = 165/448 (36%), Positives = 234/448 (52%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
C LKNL +LDL N+F G IP CL +L L+VLD+S+NQLSG +PS+ ++L SLEYL
Sbjct: 243 CKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLS 302
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPS 122
NF G+ S+N L N + L+ +++ ++ ++ + + +L+++ LS +L IP+
Sbjct: 303 DNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQ-KKLRLVDLSSNNLSGNIPT 361
Query: 123 FLLQHY-HLIFLDLSNNK--------VVGNFPIC--SNNNFAGKLPRNMGIVLQKLIYLD 171
+LL + L L L NN +V N I S NN GK P M L L+ L+
Sbjct: 362 WLLTNNPELEVLQLQNNSFTIFPIPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLN 420
Query: 172 MPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231
N F+G P SIGEMK + DLS NNFSG+LP+ V+GCV++ LS+N F G+
Sbjct: 421 GSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFL 480
Query: 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXXX 291
P+ N L L +DNN F+G NI LS L ++D+
Sbjct: 481 PRETNFPSLDVLRMDNNLFTG-----NIGGGLSNSTMLRILDM----SNNGLSGAIPRWL 531
Query: 292 XKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG----HIPNELCHVSRFL 347
+ YL I+ +N G IP + + L L L GN G H+ +EL + FL
Sbjct: 532 FEFPYLDYVLIS-NNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSEL-GIYMFL 589
Query: 348 HR--FYSN-----LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400
H F LK + LDL +N+LSG IP + Q+I L L N L+G+IP
Sbjct: 590 HNNNFTGPIPDTLLKSVQILDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELC 648
Query: 401 NLKMTESLDLSHNRLSGHIPPQLTGLNF 428
+L LDLS N+L+G IP L+ L+F
Sbjct: 649 DLSNVRLLDLSDNKLNGVIPSCLSNLSF 676
|
|
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 164/468 (35%), Positives = 237/468 (50%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
GIC L N+ ELDLS N GH+P CL +LT L+VLD+S+N+L+G VPS+L +L SLEYL
Sbjct: 239 GICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLS 298
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHLHVI 120
F +F+G+ S SLAN S L VL + S S+ LQV +E+ W P QL V+ L C++ +
Sbjct: 299 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 358
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFP--ICSNNNFAGKL--PRNMGIVLQ------KLIYL 170
P FLL L +DLS+N + G P + +NN L N+ Q L++L
Sbjct: 359 PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHNLLFL 418
Query: 171 DMPKNIFEGDIPYSIGEM-KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
D+ N F P +IG + L + S+NNF LP + + DLS N+F G
Sbjct: 419 DVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSL-GNMNGIQYMDLSRNSFHGN 477
Query: 230 IFPKYMNLTH-LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXX 288
+ ++N + + L L +N SG+ I + + ++ + +F
Sbjct: 478 LPRSFVNGCYSMAILKLSHNKLSGE-----IFPESTNFTNI--LGLFMDNNLFTGKIGQG 530
Query: 289 XXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS--RF 346
+L L + +N G IP I EL +L LL+ N L+G IP L + S +
Sbjct: 531 LRSLINLELLDMS---NNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQL 587
Query: 347 LHRFYSNLKYMA--------G--LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIP 396
L ++L + G L L N+LSG IP + L N+ L+L NN SG IP
Sbjct: 588 LDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTL--LANVEILDLRNNRFSGKIP 645
Query: 397 ESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
E F N++ L L N +G IP QL GL+ + ++S N L+G P
Sbjct: 646 E-FINIQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIP 692
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 154/470 (32%), Positives = 230/470 (48%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTS-LEY 59
LGIC L L ELDLSSN +P CL NLTHL+ LD+SNNQL+G + S ++ L S LEY
Sbjct: 352 LGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEY 410
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTET-WHPTSQLKVLKLSDCHL- 117
L NF G+ NSL N ++L V +SS ++QV+TE+ W P QLK+L LS+C L
Sbjct: 411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLG 470
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFP--ICSNNN------FAGK-LPR-NMGIVLQKL 167
+ FL+ L F+DLS+NK+ G FP + NN +G L + + I++ L
Sbjct: 471 STMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHGL 530
Query: 168 IYLDMPKNIFEGDIPYSIGEM-KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
LD+ N+ I IG + L + S N+F G +P I +L + D+S+N
Sbjct: 531 QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSI-GEMKSLQVLDMSSNGL 589
Query: 227 FGQIFPKYMNLTH-LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXX 285
+GQ+ +++ + L L L NN GK I + + L L + +F
Sbjct: 590 YGQLPIMFLSGCYSLRVLKLSNNQLQGK-----IFSKHANLTGL--VGLFLDGNNFTGSL 642
Query: 286 XXXXXXXKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP----NELC 341
K+L L DN+F G +P I +S L L + GN L+G P +
Sbjct: 643 EEGLLKSKNLTLLD---ISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWV 699
Query: 342 HVSRFLHRFYS-----NLKY--MAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA 394
V H +S N+ + + L L +NE +G +P + + + L+L NN SG
Sbjct: 700 EVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGK 759
Query: 395 IPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
I + L L +N +IP ++ L+ + ++S+N GP P
Sbjct: 760 ILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIP 809
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| TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 159/488 (32%), Positives = 243/488 (49%)
Query: 4 CNLKNLFE--LDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
C + N F LDLS G++ +++L LK LD+S N +G++P++ NL+ LE+LD
Sbjct: 58 CGVNNSFVEMLDLSGLQLRGNVT-LISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLD 116
Query: 62 RFSIN-FQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
S+N F G I + KL L + SN L V E P +LKVL+ + V
Sbjct: 117 -LSLNRFVGAIPVE----FGKLRGLRAFNISNNLLVG-EI--P-DELKVLERLE-EFQVS 166
Query: 121 PSFLLQHY-HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+ L H + +LS+ +V + N+ G++P +G+V +L L++ N EG
Sbjct: 167 GNGLNGSIPHWVG-NLSSLRVFTAY----ENDLVGEIPNGLGLV-SELELLNLHSNQLEG 220
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLT 238
IP I E +L + L++N +GELP+ V C L + NN G + P+ + N++
Sbjct: 221 KIPKGIFEKGKLKVLVLTQNRLTGELPEA-VGICSGLSSIRIGNNELVG-VIPRTIGNIS 278
Query: 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXXXXKHLYLQ 298
L + D N+ SG+ I+ + S+ +L L+++ + + LQ
Sbjct: 279 GLTYFEADKNNLSGE-----IVAEFSKCSNLTLLNL----AANGFAGTIPTELGQLINLQ 329
Query: 299 KNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR--FL----HRFYS 352
+ ++G N FG IP NL+ L L N L G IP ELC + R +L +
Sbjct: 330 ELILSG-NSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRG 388
Query: 353 NLKYMAG-------LDLSSNELSGEIPREIGQLQNIR-ALNLSNNFLSGAIPESFSNLKM 404
++ + G L L N L+G IP EIG+++N++ ALNLS N L G++P L
Sbjct: 389 DIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDK 448
Query: 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464
SLD+S+N L+G IPP L G+ L N S N L+GP P F SS+ GN ELC
Sbjct: 449 LVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPNSSFLGNKELC 508
Query: 465 GSLIRKKC 472
G+ + C
Sbjct: 509 GAPLSSSC 516
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| TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.8e-44, P = 3.8e-44
Identities = 157/501 (31%), Positives = 234/501 (46%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEYLD 61
+ N +L +LDLS NN G IP L ++T L+ LD++ N SG + L N +SL YL
Sbjct: 120 LSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLS 179
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSG--SNMLQVKTETWHPTSQLKVLKLSDCHLH- 118
+ +G I ++L S L L +S S + W +L+ L LS L
Sbjct: 180 LSHNHLEGQIP-STLFRCSVLNSLNLSRNRFSGNPSFVSGIWR-LERLRALDLSSNSLSG 237
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFP----IC--------SNNNFAGKLPRNMGIVLQK 166
IP +L ++L L L N+ G P +C S+N+F+G+LPR + L+
Sbjct: 238 SIPLGILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQ-KLKS 296
Query: 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
L + D+ N+ GD P IG+M L D S N +G+LP I S +L +LS N
Sbjct: 297 LNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSI-SNLRSLKDLNLSENKL 355
Query: 227 FGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK-------------SLELID 273
G++ + L + L N FSG + D + L ++ S L +
Sbjct: 356 SGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLGLQEMDFSGNGLTGSIPRGSSRLFE 415
Query: 274 IFEXXXXXXXXXXXXXXXXKHLYLQKNAITGD-NKFFGRIPYQINELSNLHVLLLRGNSL 332
L++ + N F R+P +I L NL VL LR ++L
Sbjct: 416 SLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSAL 475
Query: 333 QGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392
G +P ++C S+ L L L N L+G IP IG +++ L+LS+N L+
Sbjct: 476 IGSVPADICE-SQSLQI----------LQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLT 524
Query: 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452
G IP+S SNL+ + L L N+LSG IP +L L L NVS+N L G P + F +
Sbjct: 525 GPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSL 584
Query: 453 DESSYTGNHELCGSLIRKKCS 473
D+S+ GN +C L+R C+
Sbjct: 585 DQSAIQGNLGICSPLLRGPCT 605
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| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 151/480 (31%), Positives = 222/480 (46%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+LK+L L L N G IP L NLT L+ D+S N+LSG +PS+L L+SL ++
Sbjct: 174 SLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQ 233
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSF 123
N G I NS+ N S L + + T + L+V+ + H IP+
Sbjct: 234 NNLSGMIP-NSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPAS 292
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMG-IVLQKLIYLDMPKNIFEGDIP 182
+ HL + + N G + F G+L RN+ + L + ++ ++ + G I
Sbjct: 293 VANASHLTVIQIYGNLFSGII----TSGF-GRL-RNLTELYLWRNLFQTREQDDW-GFIS 345
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLTHLH 241
+ +L +L NN G LP + +L L N G I PK + NL L
Sbjct: 346 -DLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSI-PKDIGNLIGLQ 403
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEXXXXXXXXXXXXXXXXKHLYLQKNA 301
LYL NN+F G + + L +LK+L ++ +E ++ L
Sbjct: 404 HLYLCNNNFRGSLPSS-----LGRLKNLGILLAYENNLSGSIPLAIGNLTELNILL---- 454
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF--------------L 347
G NKF G IPY ++ L+NL L L N+L G IP+EL ++ +
Sbjct: 455 -LGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSI 513
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
+ +LK + SN LSG+IP +G Q +R L L NN LSG+IP + LK E+
Sbjct: 514 PQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLET 573
Query: 408 LDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSL 467
LDLS N LSG IP L + L + N+S+N+ G P FA S GN +LCG +
Sbjct: 574 LDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGI 633
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00013121001 | SubName- Full=Chromosome undetermined scaffold_439, whole genome shotgun sequence; (851 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 551 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-43 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-36 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-30 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-23 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-47
Identities = 146/476 (30%), Positives = 210/476 (44%), Gaps = 117/476 (24%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NLKNL L L N G IP + +L L LD+S+N LSG++P + L +LE L FS
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
NF G I + +L + +L+VL QL K S IP L
Sbjct: 318 NNFTGKIPV-ALTSLPRLQVL--------------------QLWSNKFSG----EIPKNL 352
Query: 125 LQHYHLIFLDLSNNKVVGNFP--ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+H +L LDLS N + G P +CS+ N L KLI N EG+IP
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGN------------LFKLILF---SNSLEGEIP 397
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
S+G + L L N+FSGELP ++ L +++
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPS-------------------------EFTKLPLVYF 432
Query: 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAI 302
L + NN+ G+++ + + SL+++ + N G L SF +++L L +N
Sbjct: 433 LDISNNNLQGRINS-----RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN-- 485
Query: 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
+F G +P ++ LS L L L
Sbjct: 486 ----QFSGAVPRKLGSLSEL-----------------------------------MQLKL 506
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422
S N+LSGEIP E+ + + +L+LS+N LSG IP SFS + + LDLS N+LSG IP
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566
Query: 423 LTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKP 478
L + L N+S+N+L G P F + S+ GN +LCG +S L P
Sbjct: 567 LGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG----DTTSGLPP 618
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 5e-43
Identities = 142/441 (32%), Positives = 197/441 (44%), Gaps = 69/441 (15%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLT-SLEYLDRF 63
N + +DLS N G I + L +++ +++SNNQLSG +P + + SL YL+
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
+ NF G+I S+ N LE L +S +NML + IP+
Sbjct: 127 NNNFTGSIPRGSIPN---LETLDLS--NNMLSGE----------------------IPND 159
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
+ L LDL N +VG P N L L +L + N G IP
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTN-------------LTSLEFLTLASNQLVGQIPR 206
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
+G+MK L L NN SGE+P I G +L+ DL NN G I NL +L +L
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG---SLVSSFNLSSVKHLYLQKN 300
+L N SG + + L +L SL+L D NSLSG LV + HL+
Sbjct: 266 FLYQNKLSGPI--PPSIFSLQKLISLDLSD---NSLSGEIPELVIQLQNLEILHLF---- 316
Query: 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGL 360
N F G+IP + L L VL L N G IP L ++NL L
Sbjct: 317 ----SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK--------HNNLTV---L 361
Query: 361 DLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420
DLS+N L+GEIP + N+ L L +N L G IP+S + + L N SG +P
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421
Query: 421 PQLTGLNFLSNFNVSYNNLSG 441
+ T L + ++S NNL G
Sbjct: 422 SEFTKLPLVYFLDISNNNLQG 442
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-36
Identities = 132/452 (29%), Positives = 193/452 (42%), Gaps = 93/452 (20%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65
+ NL LDLS+N G IP + + + LKVLD+ N L GK+P++LTNLTSLE+L S
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLL 125
G I Q+K LK
Sbjct: 199 QLVGQIP-----------------------------RELGQMKSLK-------------- 215
Query: 126 QHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185
I+L +N +G++P +G L L +LD+ N G IP S+
Sbjct: 216 ----WIYLGYNN--------------LSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSL 256
Query: 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245
G +K L L +N SG +P P + L DLS+N+ G+I + L +L L+L
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315
Query: 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGD 305
+N+F+GK I V L+ L L+++ ++ N SG + K+L N D
Sbjct: 316 FSNNFTGK-----IPVALTSLPRLQVLQLWSNKFSGEI--------PKNLGKHNNLTVLD 362
Query: 306 ---NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
N G IP + NL L+L NSL+G IP L + + + L
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL-----------GACRSLRRVRL 411
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422
N SGE+P E +L + L++SNN L G I ++ + L L+ N+ G + P
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PD 470
Query: 423 LTGLNFLSNFNVSYNNLSGPTPDKEQFATFDE 454
G L N ++S N SG P K + E
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRK--LGSLSE 500
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
+D+ G I +I + + +LS N SG +P I + +L +LSNNNF G
Sbjct: 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-N 288
I P+ ++ +L L L NN SG+ I + SL+++D+ N L G + +S N
Sbjct: 134 I-PR-GSIPNLETLDLSNNMLSGE-----IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186
Query: 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348
L+S++ L L N+ G+IP ++ ++ +L + L N+L G IP E+ ++ H
Sbjct: 187 LTSLEFLTL------ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
LDL N L+G IP +G L+N++ L L N LSG IP S +L+ SL
Sbjct: 241 -----------LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289
Query: 409 DLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
DLS N LSG IP + L L ++ NN +G P
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 88/297 (29%), Positives = 134/297 (45%), Gaps = 45/297 (15%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L L L L SN F G IP+ L +L VLD+S N L+G++P L + +L L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
FS + +G I + + + ++ +V+ + + +L P
Sbjct: 387 LFSNSLEGEIPKS------------LGACRSLRRVRLQDNSFSGEL-------------P 421
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPI------------CSNNNFAGKLPRNMGIVLQKLIY 169
S + + FLD+SNN + G + N F G LP + G ++L
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLEN 479
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
LD+ +N F G +P +G + EL LS N SGE+P + S C L DLS+N GQ
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQ 538
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS 286
I + + L L L N SG+ I L ++SL ++I N L GSL S+
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGE-----IPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
GL L + L G IP +I +L++++++NLS N + G IP S ++ E LDLS+N +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTPDKE-----QFATFDESSYTGNHELCGSLIRKKCS 473
IP L L L N++ N+LSG P A+F+ +T N LCG + C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRACG 538
Query: 474 SALKPPATPTEEAGEEEDDSMIDMVALKWSFGASFVTVILGLFAVLWINSYWRRR 528
P G + + +FG S + L + A+ W W+RR
Sbjct: 539 --------PHLSVGAK----------IGIAFGVSVAFLFLVICAMCW----WKRR 571
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Query: 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRAL 384
L L L+G IPN++ S L+++ ++LS N + G IP +G + ++ L
Sbjct: 423 LGLDNQGLRGFIPNDI-----------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471
Query: 385 NLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL-SNFNVSYN 437
+LS N +G+IPES L L+L+ N LSG +P L G ++FN + N
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
I L++L ++LS N+ G+IP L ++T L+VLD+S N +G +P +L LTSL L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 241 HW----LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHL 295
W L LDN G + + +S+L+ L+ I++ NS+ G++ S +++S++ L
Sbjct: 417 KWFIDGLGLDNQGLRGFIPN-----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
L N F G IP + +L++L +L L GNSL G +P L R LHR N
Sbjct: 472 DLSYN------SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG--GRLLHRASFNFT 523
Query: 356 YMAGL 360
AGL
Sbjct: 524 DNAGL 528
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT-ESLDL 410
+N + +DLS +SG+I I +L I+ +NLSNN LSG IP+ + L+L
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
S+N +G IP + L ++S N LSG P
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
++ +L LDLS N+F G IP+ L LT L++L+++ N LSG+VP+ L L R S
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL----LHRAS 519
Query: 65 INF 67
NF
Sbjct: 520 FNF 522
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 12 LDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTI 71
L L + G IP ++ L HL+ +++S N + G +P +L ++TSLE LD +F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 72 SINSLANHSKLEVLLISSGS 91
SL + L +L ++ S
Sbjct: 483 P-ESLGQLTSLRILNLNGNS 501
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-05
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
NL LDLS+N L +LKVLD+S N L+ P + L SL LD
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 7e-05
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 360 LDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
LDLS+N L+ IP L N++ L+LS N L+ PE+FS L SLDLS N L
Sbjct: 5 LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
IP+ + + HL ++LS N + GN P S + L LD+ N F
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITS------------LEVLDLSYNSFN 479
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELP 206
G IP S+G++ L + +L+ N+ SG +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNN 438
N+++L+LSNN L+ +F L + LDLS N L+ I P+ +GL L + ++S NN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59
Query: 439 L 439
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 149 NNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208
N G +P ++ L+ L +++ N G+IP S+G + L + DLS N+F+G +P+
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDA 257
+ GQ LT L L L+ N SG++ A
Sbjct: 486 L------------------GQ-------LTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.94 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.69 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.66 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.53 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.35 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.33 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.29 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.21 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.18 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.18 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.09 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.09 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.06 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.01 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.97 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.97 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.97 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.83 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.81 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.74 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.68 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.63 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.52 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.51 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.28 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.13 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.08 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.92 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.87 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.86 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.62 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.62 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.61 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.41 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.0 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.92 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.44 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.35 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.98 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.68 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.32 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.1 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.45 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.51 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.51 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.5 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.79 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.79 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.95 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 86.49 | |
| PF12273 | 130 | RCR: Chitin synthesis regulation, resistance to Co | 84.42 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 84.18 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 84.07 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 83.27 | |
| PF02439 | 38 | Adeno_E3_CR2: Adenovirus E3 region protein CR2; In | 80.37 | |
| PF02009 | 299 | Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00 | 80.23 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-52 Score=463.19 Aligned_cols=442 Identities=36% Similarity=0.532 Sum_probs=294.6
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
.+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+| ..+..+++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccE
Confidence 46677777777777766667677777777777777777766667777777777777777776665554 34666666666
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC------------CCCCc
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI------------CSNNN 151 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~------------~~~~~ 151 (551)
|++++|.+...++. .+..+++|++|++++|.+ ..+|..+.++++|++|++++|.+.+..|. +.++.
T Consensus 217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 66666665444433 355666666666666666 35556666666666666666666554442 33444
Q ss_pred ccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC
Q 046908 152 FAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231 (551)
Q Consensus 152 ~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 231 (551)
+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|++.+..|
T Consensus 296 l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 296 LSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCC
Confidence 55555544432 5566666666666666666666666666666666666655555433 335556666666665555555
Q ss_pred cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeecccccccc------
Q 046908 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG------ 304 (551)
Q Consensus 232 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~------ 304 (551)
..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++..+..+ .+++|+.|++++|.+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEG-----EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred hhHhCcCCCCEEECcCCEecc-----cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 555555555555555555544 223334444555555555555444444433 44444444444444431
Q ss_pred ------------CccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 305 ------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 305 ------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
.+.+.+.+|..+ ..++|+.|++++|++.+.+|.. +.++++|+.|++++|.+.+.+|
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRK-----------LGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChh-----------hhhhhccCEEECcCCcceeeCC
Confidence 000011333332 2355666666666665555544 4677889999999999999999
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+.++++|++|++++|.+++.+|..|..+++|+.|++++|++++.+|..+..++.|+++++++|++.+.+|....+.++
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 596 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccCCCCCCCCcc
Q 046908 453 DESSYTGNHELCGSL 467 (551)
Q Consensus 453 ~~~~~~~n~~~c~~~ 467 (551)
....+.||+..|+..
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 889999999999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=445.40 Aligned_cols=447 Identities=33% Similarity=0.472 Sum_probs=393.0
Q ss_pred CCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
.++++|++|+|++|++++..|. ..+++|++|+|++|.+++..|..++++++|++|++++|.+.+.+| ..+.++++|+
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 191 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLE 191 (968)
T ss_pred ccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCC
Confidence 4789999999999999987775 568999999999999999999999999999999999999987776 4689999999
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC------------CCCC
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI------------CSNN 150 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~------------~~~~ 150 (551)
+|++++|.+....+. .+..+++|++|++++|.+ ..+|..+.++++|++|++++|.+.+..|. +..+
T Consensus 192 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 999999987666554 688999999999999999 57899999999999999999999877764 5667
Q ss_pred cccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC
Q 046908 151 NFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230 (551)
Q Consensus 151 ~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 230 (551)
.+.+.+|..+.. +++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..
T Consensus 271 ~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 271 KLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred eeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcC
Confidence 788888888775 8999999999999999999999999999999999999997777654 67999999999999999999
Q ss_pred CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccce
Q 046908 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFF 309 (551)
Q Consensus 231 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~ 309 (551)
|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~-----~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~----- 418 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTG-----EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG----- 418 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEe-----eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-----
Confidence 9999999999999999999987 455668899999999999999999888877 89999999999998863
Q ss_pred eccCccccccCCCceEEecCCcccccCChhhhhhhchhhHh------------hhccccCceEecCCCcCcccCCccccC
Q 046908 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF------------YSNLKYMAGLDLSSNELSGEIPREIGQ 377 (551)
Q Consensus 310 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 377 (551)
.+|..+..+++|+.|++++|.+.+.+|..+..++++..-. ..+.++|+.|++++|++++..|..+..
T Consensus 419 -~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 419 -ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred -ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence 6777788888888888888888877776554444442111 123467899999999999999999999
Q ss_pred CCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcc
Q 046908 378 LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESS 456 (551)
Q Consensus 378 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~ 456 (551)
+++|++|++++|++++.+|..+.++++|+.|++++|.+++.+|..|..+++|+.|++++|++++..|. ...+..+..++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988887 55677888899
Q ss_pred cCCCCCCCCcc
Q 046908 457 YTGNHELCGSL 467 (551)
Q Consensus 457 ~~~n~~~c~~~ 467 (551)
+.+|+..+..|
T Consensus 578 ls~N~l~~~~p 588 (968)
T PLN00113 578 ISHNHLHGSLP 588 (968)
T ss_pred ccCCcceeeCC
Confidence 99999877544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=340.42 Aligned_cols=397 Identities=23% Similarity=0.234 Sum_probs=212.7
Q ss_pred CCEEECcCCCCcccCCccCCCC--CCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcC-CCCCCEE
Q 046908 9 LFELDLSSNNFEGHIPQCLNNL--THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLAN-HSKLEVL 85 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L 85 (551)
-+.||.+++.+..+....+.+. +.-+.|++++|+++.+.+..|.++++|+.+++..|.++ .+|. |.. ..+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEE
Confidence 4567777777765444444433 23355888888887777777778888888877777766 3331 222 2235555
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+|.+|. +..+..+.+..++.|+.|||+.|.|+.+| ..-|-.-.
T Consensus 131 ~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~------------------------------------~~sfp~~~ 173 (873)
T KOG4194|consen 131 DLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIP------------------------------------KPSFPAKV 173 (873)
T ss_pred eeeccc-cccccHHHHHhHhhhhhhhhhhchhhccc------------------------------------CCCCCCCC
Confidence 554443 22233333444444444444444444444 22222233
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
++++|+|++|.|+....+.|..+.+|..|.|++|+++ .+|...|..+++|+.|+|..|++.-..--+|.++++|+.|.|
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 4555555555555555555555555555555555555 555555555555555555555554443445555555555555
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCce
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
..|.+....+++ |..+.++++|+|..|+++.....++ ++++|+.|++++|.|.. .-+.++..+++|++
T Consensus 253 qrN~I~kL~DG~-----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r------ih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 253 QRNDISKLDDGA-----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR------IHIDSWSFTQKLKE 321 (873)
T ss_pred hhcCcccccCcc-----eeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe------eecchhhhccccee
Confidence 555555554444 5555555555555555555544444 55555555555555542 22344555555566
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc---cccC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE---SFSN 401 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 401 (551)
|+|++|+++. ++...|..+..|++|+|++|.+...-...|.++++|++|||++|.++..+.+ .|.+
T Consensus 322 LdLs~N~i~~-----------l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 322 LDLSSNRITR-----------LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred Eecccccccc-----------CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 6666555551 1222244455555555555555544444555555555555555555544332 2555
Q ss_pred CCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 402 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+++|+.|++.+|++..+...+|.+++.|+.|||.+|.+-.+-++......++++.+..-.++|+|.+
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 5555555555555554444455555555555555555554444422222444555555555666654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=332.05 Aligned_cols=374 Identities=24% Similarity=0.277 Sum_probs=289.7
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-+.||+|+|++..+-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.+. .+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 4567999999999888899999999999999999999 78876666778999999999888 566678999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
|.|. +..++...|..-.++++|+|++|.|+.+.. .|..+.+|..|.|+.|+++ .+|...|..+++
T Consensus 157 SrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-------------tLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-------------TLPQRSFKRLPK 222 (873)
T ss_pred hhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-------------ccCHHHhhhcch
Confidence 9886 566777778888899999999999987764 6777889999999999998 899988888899
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.|+|..|.+.-...-.|.++++|+.|.|..|.+. .+..++|.++.++++|+|+.|+++.....++.+++.|++|+++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 999999999888665667888888888888888887 7888888888888888888888887777778888888888888
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCc-cccccCCCce
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPY-QINELSNLHV 324 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~l~~L~~ 324 (551)
+|.|..+..++ ++..++|++|+|++|.++...+..| .+..|++|.|++|.++ .+.+ .|..+++|++
T Consensus 302 ~NaI~rih~d~-----WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-------~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRIHIDS-----WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-------HLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhhheeecch-----hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-------HHHhhHHHHhhhhhh
Confidence 88888765554 7777888888888888888777777 6777777777777665 2222 2445555555
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKM 404 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 404 (551)
|||+.|.+...+-. ....|.++++|+.|++.+|++..+...+|.+++.
T Consensus 370 LdLr~N~ls~~IED--------------------------------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 370 LDLRSNELSWCIED--------------------------------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred hcCcCCeEEEEEec--------------------------------chhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 55555555433322 1234555666666666666666555566666666
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCC
Q 046908 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 405 L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 443 (551)
|++|||.+|.|..+.|.+|..+ .|+.|.+..-++.|.+
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 6666666666666666666666 6666666555555444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=295.58 Aligned_cols=424 Identities=26% Similarity=0.358 Sum_probs=318.1
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
..++.+++++|.++ .+.+.+.++..|.+|++++|++. ..|.+++.+..++.++.++|++. .+| ..+..+.+++.++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhh
Confidence 35778889999888 45556888999999999999988 78888899999999999999887 444 3477788888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
.++|.... .++ .+..+-.|+.++..+|++.++|+.++.+.++..+++.+|.+. .+|+.... ++.
T Consensus 121 ~s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-------------~l~~~~i~-m~~ 184 (565)
T KOG0472|consen 121 CSSNELKE-LPD-SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-------------ALPENHIA-MKR 184 (565)
T ss_pred ccccceee-cCc-hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-------------hCCHHHHH-HHH
Confidence 88876433 333 466777888889999999999999999989999999999887 67776665 778
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.+|...|-+. .+|..++.+.+|..|++..|++. .+|+ |.+|..|.+++++.|.+.....+...+++++..||+.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 888888888777 66777888888888888888887 7773 5678888888888888875555555688888888888
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeecccccccc----------------------
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG---------------------- 304 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~---------------------- 304 (551)
.|+++ ..|....-+.+|++||+++|.+++.++..-++ .|+.|-+.+|.+..
T Consensus 261 dNklk------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 261 DNKLK------EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ccccc------cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 88887 45555778888888888888888877665566 78888888887653
Q ss_pred ------------------------------------CccceeccCccccccCC---CceEEecCCcccccCChhhhhhhc
Q 046908 305 ------------------------------------DNKFFGRIPYQINELSN---LHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 305 ------------------------------------~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
...-...+|..++.... ...++++.|++. ++|..+..+..
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000122222211111 445566666665 56655544443
Q ss_pred h-------------hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCC
Q 046908 346 F-------------LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSH 412 (551)
Q Consensus 346 l-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 412 (551)
+ .......+++|..|+|++|.+. .+|..++.+..|++|+++.|++. ..|.....+..|+.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 3 2233356677777888877776 67777777777888888888776 6666666666667776677
Q ss_pred CcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 413 NRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 413 n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
|++..+.|..+..+..|.+||+.+|.+...+|..+.+..++.+.+.|||+..
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 7887666666899999999999999999988888899999999999999873
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=297.51 Aligned_cols=372 Identities=22% Similarity=0.328 Sum_probs=243.5
Q ss_pred CCCCCCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCC
Q 046908 1 LGICNLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANH 79 (551)
Q Consensus 1 ~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 79 (551)
++-+-+|-++-+|+|+|.++ +.+|.....++++++|.|...++. .+|+.++.+.+|++|.+++|++.... +.+..+
T Consensus 1 ~~tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~L 77 (1255)
T KOG0444|consen 1 MSTGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDL 77 (1255)
T ss_pred CCccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccc
Confidence 35667888999999999999 678999999999999999999999 89999999999999999999987432 457778
Q ss_pred CCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChh
Q 046908 80 SKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRN 159 (551)
Q Consensus 80 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~ 159 (551)
+.|+.+.++.|++-....+..+..+..|+.|+|++|++..+|..+..-+++-.|+||+|+|. .+|..
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-------------tIPn~ 144 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-------------TIPNS 144 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-------------cCCch
Confidence 88888888888766665444566777888888888888888888888888888888888887 77887
Q ss_pred HhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc-cccCCcccCCCC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF-FGQIFPKYMNLT 238 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~ 238 (551)
+|.+++.|-.|||++|++. .+|.....+..|++|+|++|.+. .+.-.-.-.+++|+.|.+++.+- ...+|.++.++.
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 7777777777788777777 45666677777777777777654 22211112245556666655432 234555555666
Q ss_pred CCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccc
Q 046908 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+|+.+|++.|.+. .+|..+-.+++|+.|++|+|+++......-...+|+.|+++.|+++ .+|.++..
T Consensus 223 NL~dvDlS~N~Lp------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------~LP~avcK 289 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------VLPDAVCK 289 (1255)
T ss_pred hhhhccccccCCC------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-------cchHHHhh
Confidence 6666666666554 3444555556666666666655554332223445555555555555 55555555
Q ss_pred cCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 319 LSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 319 l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
+++|+.|.+.+|+++- -+|+.+ +.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGI-----------GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe 356 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGI-----------GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE 356 (1255)
T ss_pred hHHHHHHHhccCcccccCCccch-----------hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence 5555555555555441 134433 22333444455555544 45555555555555555555554 4445
Q ss_pred cccCCCCCCEEeCCCCcCc
Q 046908 398 SFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~ 416 (551)
++.-++.|+.||+..|.-.
T Consensus 357 aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhcCCcceeeccCCcCc
Confidence 5555555555555555443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=290.56 Aligned_cols=372 Identities=26% Similarity=0.351 Sum_probs=323.8
Q ss_pred CCCCCCCEEEcccCcCc-cccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCC
Q 046908 28 NNLTHLKVLDISNNQLS-GKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQ 106 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 106 (551)
+-+|-.+-.|+++|.++ +..|.....+++++.|.|....+. .+| +.++.+.+|++|.+++|+++.... -+..++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHG--ELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhh--hhccchh
Confidence 45677788999999999 678999999999999999888876 455 568999999999999998765544 3678899
Q ss_pred ccEEEccCCCC--CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 107 LKVLKLSDCHL--HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 107 L~~L~l~~n~l--~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
|+.+.+..|++ +.+|..++.+..|+.||||.|++. +.|..+-. ..++..|+|++|.|..+....
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------EvP~~LE~-AKn~iVLNLS~N~IetIPn~l 145 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------EVPTNLEY-AKNSIVLNLSYNNIETIPNSL 145 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-------------hcchhhhh-hcCcEEEEcccCccccCCchH
Confidence 99999999999 789999999999999999999998 78887765 678999999999999766667
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
|.++..|-.||||+|++. .+|..+ ..+..|+.|+|++|.+.......+-.+++|+.|++++.+-+-. .+|.++.
T Consensus 146 finLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----N~Ptsld 219 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----NIPTSLD 219 (1255)
T ss_pred HHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh----cCCCchh
Confidence 889999999999999998 899887 4589999999999988765556667788999999998765432 5677799
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.+.+|..+|+|.|.+...+...+.+++|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++.+
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-------eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL- 290 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-------ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL- 290 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-------eeeccHHHHhhhhhhccccchhc-cchHHHhhh-
Confidence 999999999999999988887779999999999999998 56666677789999999999998 899988665
Q ss_pred chhhHhhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 423 (551)
+.|+.|.+.+|+++- -+|..++.+.+|+++..++|.+. ..|+.+..+++|+.|.|++|++- .+|+++
T Consensus 291 ----------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 291 ----------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred ----------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 456889999998873 48999999999999999999997 89999999999999999999998 789999
Q ss_pred CCCCCCCeEECCCCccccCCC
Q 046908 424 TGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 424 ~~l~~L~~l~l~~N~l~~~~~ 444 (551)
.-++.|..||++.|+=.-.+|
T Consensus 359 HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhcCCcceeeccCCcCccCCC
Confidence 999999999999996543444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=285.11 Aligned_cols=401 Identities=26% Similarity=0.363 Sum_probs=271.4
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+.++..|++|++++|++. ..|.+++.+..++.++.++|+++ .+|.+++.+.+|+.++.++|.+....+ .+..+..+
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~--~i~~~~~l 139 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD--SIGRLLDL 139 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc--hHHHHhhh
Confidence 346777888888888887 67777888888888888888888 777778888888888877777763322 35556666
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
+.++..+|++. ..|. .+..+.+|..+++.+|++..+|+..-.++.|++||...|.+. .+|+.++.
T Consensus 140 ~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-------------tlP~~lg~ 204 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-------------TLPPELGG 204 (565)
T ss_pred hhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-------------cCChhhcc
Confidence 66666555422 2222 234444555555555555554444333455555555544444 33333332
Q ss_pred ---------------------hcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEEC
Q 046908 163 ---------------------VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDL 221 (551)
Q Consensus 163 ---------------------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 221 (551)
.+..|.++.+..|.+.........++.++..||+++|+++ ++|.++.- +.+|++||+
T Consensus 205 l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDl 282 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDL 282 (565)
T ss_pred hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcc
Confidence 1445555555555555322223346677777777777776 77766643 666777777
Q ss_pred cCCcccccCCcccCCCCCCCEEecccccccCcCCC------chhh------------------------------Hhhcc
Q 046908 222 SNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDD------ANIL------------------------------VQLSQ 265 (551)
Q Consensus 222 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~------------------------------~~~~~ 265 (551)
++|.+++ .|.+++++ +|+.|-+.+|++..+..+ +.+. .....
T Consensus 283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 7777764 34566777 777777777766543210 0000 01122
Q ss_pred CCCCCEEECCCCcccccCCCcccc---cccceeecccccccc-----------------CccceeccCccccccCCCceE
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNL---SSVKHLYLQKNAITG-----------------DNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~-----------------~~~~~~~~~~~~~~l~~L~~L 325 (551)
+.+.+.|+++.-.++.++...|.. .-....++++|++.. .+...+-+|..++.+++|..|
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 345667777777777776666622 225666777776652 233334566667888999999
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
++++|.+. .+|.++ ..+..|+.|+++.|.+. ..|.....+..++.+-.++|++..+.++.+.++.+|
T Consensus 441 ~L~NN~Ln-~LP~e~-----------~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEM-----------GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred ecccchhh-hcchhh-----------hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 99999887 788775 55667899999999998 889888888888888889999998888889999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
..||+.+|.+. .+|..+.+|++|++|++.+|+|.
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999998 88999999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-31 Score=269.80 Aligned_cols=421 Identities=24% Similarity=0.273 Sum_probs=254.7
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
++.|+++.|.+....-+...+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+| ....++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhheec
Confidence 566667666554322233444445778888877777 67777777777888877777665 344 446677777777776
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCC-------CCCCcccccCChhHh
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPI-------CSNNNFAGKLPRNMG 161 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~-------~~~~~~~~~l~~~~~ 161 (551)
+|. .... +..+..+.+|+.|+++.|++..+|..+..++.+..++.++|.....++. +..+.+.+.++..+.
T Consensus 100 ~n~-l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNR-LQSL-PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cch-hhcC-chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 554 2222 3346667788888888888888887777777777777777721111110 222222233333332
Q ss_pred hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 162 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
. +.. .|+|++|.+... .+..+.+|+.+....|++. ++.. ..++|+.|+.++|.++...+ -..-.+|+
T Consensus 178 ~-l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~ 244 (1081)
T KOG0618|consen 178 N-LTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDV--HPVPLNLQ 244 (1081)
T ss_pred h-hhe--eeecccchhhhh---hhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeecc--ccccccce
Confidence 2 112 466666665511 2334455555555555554 2221 23456666666666552221 11234677
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCC
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSN 321 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~ 321 (551)
+++++.|+++ .+|.+...+.+|+.++..+|.++..+...+...+|+.|....|.+. .+|+...+.+.
T Consensus 245 ~~dis~n~l~------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-------yip~~le~~~s 311 (1081)
T KOG0618|consen 245 YLDISHNNLS------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-------YIPPFLEGLKS 311 (1081)
T ss_pred eeecchhhhh------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-------hCCCcccccce
Confidence 7777777776 4556677777777777777777666665556677777777777776 66666666777
Q ss_pred CceEEecCCcccccCChhhhhhhch---------------------------------------hhHhhhccccCceEec
Q 046908 322 LHVLLLRGNSLQGHIPNELCHVSRF---------------------------------------LHRFYSNLKYMAGLDL 362 (551)
Q Consensus 322 L~~L~l~~n~l~~~~p~~~~~~~~l---------------------------------------~~~~~~~l~~L~~L~L 362 (551)
|++|++..|++. ..|..+.+.... ....+.+...|+.|+|
T Consensus 312 L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 777777777776 444433221111 1112245556666666
Q ss_pred CCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
++|.+.......+.+++.|++|+||+|+++ .+|+....++.|++|...+|++. ..| .+..++.|+.+|++.|+++..
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 666665333334556666666666666666 45555666666666666666666 556 677888999999999998765
Q ss_pred CCC-CccCCccCCcccCCCCCCC
Q 046908 443 TPD-KEQFATFDESSYTGNHELC 464 (551)
Q Consensus 443 ~~~-~~~~~~~~~~~~~~n~~~c 464 (551)
.-. ....+.++.++++||.|.-
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhhCCCcccceeeccCCcccc
Confidence 544 3334788999999999754
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-31 Score=270.24 Aligned_cols=395 Identities=27% Similarity=0.324 Sum_probs=265.0
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
+|+.||+|+|.+. .+|..+..+.+|+.|.++.|.|. ..|.+..++.+|++|+|..|.+. ..| ..+..+.+|+.|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP-~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLP-ASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCc-hhHHhhhccccccc
Confidence 4899999999887 78888888999999999999888 77788888888888888877665 444 34777888888888
Q ss_pred ccCcccccccCCCccCCCC-------------------ccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccC-CC
Q 046908 88 SSGSNMLQVKTETWHPTSQ-------------------LKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNF-PI 146 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~-------------------L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~-~~ 146 (551)
+.|.+... |. .+..++. ++.+++..|.+ ..++..+..+++ .|||++|.+.... ..
T Consensus 122 S~N~f~~~-Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 122 SFNHFGPI-PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred chhccCCC-ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 88864322 11 1122222 44444444444 344444444443 4666666654100 00
Q ss_pred --------CCCCccc-----c---------cCCh---hHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCcc
Q 046908 147 --------CSNNNFA-----G---------KLPR---NMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNF 201 (551)
Q Consensus 147 --------~~~~~~~-----~---------~l~~---~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 201 (551)
+..+.+. | ..|- ...-...+|++++++.|++.+ +|.++..+.+|+.++..+|++
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhH
Confidence 0000000 0 0000 000012356666666666663 346666666666666666666
Q ss_pred ceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC-CCEEECCCCccc
Q 046908 202 SGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS-LELIDIFENSLS 280 (551)
Q Consensus 202 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~ 280 (551)
+ .+|...+. ..+|+.|++..|.+.. +|....++++|++|+|..|.+...++. .+..+.. |..++.+.|++.
T Consensus 277 ~-~lp~ri~~-~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~-----~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 277 V-ALPLRISR-ITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDN-----FLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred H-hhHHHHhh-hhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchH-----HHhhhhHHHHHHhhhhcccc
Confidence 5 66666543 5666666666666653 344455677777777777777644331 1333332 556666666665
Q ss_pred ccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCce
Q 046908 281 GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359 (551)
Q Consensus 281 ~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~ 359 (551)
..+...- ..+.|+.|++.+|.+++ ..-+.+-++++|+.|+|++|++. .+|... +.++..|++
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd------~c~p~l~~~~hLKVLhLsyNrL~-~fpas~----------~~kle~Lee 411 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTD------SCFPVLVNFKHLKVLHLSYNRLN-SFPASK----------LRKLEELEE 411 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccc------cchhhhccccceeeeeecccccc-cCCHHH----------HhchHHhHH
Confidence 5442222 57889999999998875 44456777899999999999997 666543 678889999
Q ss_pred EecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcc
Q 046908 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 360 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 439 (551)
|+||+|+++ .+|.....+..|++|...+|++. ..| .+.+++.|+.+|++.|+++...-..-...+.|++||+++|..
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999999999 78899999999999999999998 677 788999999999999999865433333448999999999974
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-28 Score=224.56 Aligned_cols=243 Identities=21% Similarity=0.231 Sum_probs=190.1
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-..++|..|+|+.+.+.+|+.+++||+||||+|.|+.+.|++|.++.+|.+|-+.+|+-...++.+.|.++..++-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 56789999999998899999999999999999999999999999999999999888844444888899999999998888
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCccccc--CCC------------------
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGN--FPI------------------ 146 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~--~~~------------------ 146 (551)
.-|. ..-+..+.|..+++|..|.+-+|.+..++. .+..+..++++.+..|.+... +|-
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6665 334555678888899999999999888876 777788888888877763211 000
Q ss_pred -----------------------------CCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECc
Q 046908 147 -----------------------------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLS 197 (551)
Q Consensus 147 -----------------------------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 197 (551)
...+...+..|..-|..+++|+.|+|++|+++.+.+.+|.+...+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 112223345566667777888888888888887777788888888888888
Q ss_pred CCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccC
Q 046908 198 RNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 198 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
.|++. .+...+|.++..|+.|+|++|+++...|.+|..+.+|.+|.+-.|++..
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 88886 7777788888888888888888887778888888888888887777654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-27 Score=215.87 Aligned_cols=314 Identities=19% Similarity=0.181 Sum_probs=205.1
Q ss_pred EEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCC
Q 046908 110 LKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189 (551)
Q Consensus 110 L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 189 (551)
.+-++-.++.+|..+. ...++++|..|.|+ .+|+..|..+++|+.|||++|.|+.+.|++|.++.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA 115 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcc-------------cCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence 3444455556654322 24566777777777 77777777777777777777777777777777777
Q ss_pred CCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 190 ELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 190 ~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
++..|-+.+ |+|+ .+|...|.++.+++.|.+.-|++.-...++|..+++|..|.+..|.+..+.... |..+..
T Consensus 116 ~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t-----f~~l~~ 189 (498)
T KOG4237|consen 116 SLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT-----FQGLAA 189 (498)
T ss_pred hhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc-----ccchhc
Confidence 777655544 7776 777777777777777777777776666677777777777777777776544433 666677
Q ss_pred CCEEECCCCcccccC------------CCcc-cccccceeeccccccccCccceeccCcc-cc-ccCCCceEEecCCccc
Q 046908 269 LELIDIFENSLSGSL------------VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQ-IN-ELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 269 L~~L~l~~n~l~~~~------------~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~ 333 (551)
++.+.+..|.+.... +..+ +.....-..+.+.++. .+++. |. ....+.+--.+.+...
T Consensus 190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-------q~~a~kf~c~~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-------QEDARKFLCSLESLPSRLSSEDFPD 262 (498)
T ss_pred cchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-------ccchhhhhhhHHhHHHhhccccCcC
Confidence 777766666532110 0001 1111111222222221 11111 10 0111211111222222
Q ss_pred ccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCC
Q 046908 334 GHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 334 ~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 413 (551)
+..|. ..|..+++|+.|+|++|+++++-+.+|.++..+++|.|..|+|..+....|.++..|+.|+|.+|
T Consensus 263 ~~cP~----------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 263 SICPA----------KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred CcChH----------HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 23332 23788999999999999999888889999999999999999998777778899999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 461 (551)
+|+...|.+|..+.+|.++++-.|++.|.+.-.+...+++.-...|||
T Consensus 333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred eeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 999888999999999999999999988777554444444444455555
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=233.46 Aligned_cols=307 Identities=21% Similarity=0.204 Sum_probs=193.7
Q ss_pred CCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhH
Q 046908 81 KLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNM 160 (551)
Q Consensus 81 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~ 160 (551)
+|+.|.+.++. ...+|.. | ...+|+.|++.+|++..++..+..+++|+.|+++++.... .+|.
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~------------~ip~-- 652 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK------------EIPD-- 652 (1153)
T ss_pred ccEEEEecCCC-CCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC------------cCCc--
Confidence 45556555443 2233322 2 3457777777777777777666777777777777664322 3332
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
...+++|+.|++++|.....+|..+..+++|+.|++++|.....+|... .+++|+.|++++|......|.. .++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 1225677777777776656677777777777777777764444666544 4677777777777544444432 3567
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc-------cCCCcc-cccccceeeccccccccCccceecc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG-------SLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~ 312 (551)
+.|++++|.+...+. .+ .+++|+.|++.++.... ..+..+ .+++|+.|++++|... +.+
T Consensus 728 ~~L~L~~n~i~~lP~------~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------~~l 794 (1153)
T PLN03210 728 SWLDLDETAIEEFPS------NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------VEL 794 (1153)
T ss_pred CeeecCCCccccccc------cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc------ccc
Confidence 777777777653322 12 45667777666533211 111111 3567888888877533 257
Q ss_pred CccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC
Q 046908 313 PYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 313 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE 859 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc
Confidence 7777788888888888776544566532 4567788888877544344432 356788888888887
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCc
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~ 438 (551)
.+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 566777778888888888754444566667777778888877774
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=230.01 Aligned_cols=335 Identities=19% Similarity=0.241 Sum_probs=181.9
Q ss_pred CCCCCCCCEEECcCCC------CcccCCccCCCCC-CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhh
Q 046908 3 ICNLKNLFELDLSSNN------FEGHIPQCLNNLT-HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINS 75 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 75 (551)
|.++++|+.|.+..+. +...+|+.|..++ +|+.|.+.++.++ .+|..| ...+|+.|++.++.+.. ++ ..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~-~~ 629 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW-DG 629 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc-cc
Confidence 5566777777765442 2233455555554 4777777777666 556555 45677777777766552 22 23
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccc
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG 154 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 154 (551)
+..+++|+.|+++++.....++. +..+++|+.|++++|.. ..+|..+..+++|+.|++++|....
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------------ 695 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------------ 695 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------------
Confidence 45667777777776655555542 55666777777777653 6677777777777777777654322
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc-------
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF------- 227 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------- 227 (551)
.+|..+ .+++|+.|++++|......|.. ..+|+.|++++|.+. .+|... .+++|+.|++.++...
T Consensus 696 ~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 696 ILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred ccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccc
Confidence 334333 2566777777776544444432 346667777777665 566543 3566666666553211
Q ss_pred ccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCcc
Q 046908 228 GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNK 307 (551)
Q Consensus 228 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 307 (551)
...+..+...++|+.|++++|.... .+|..+..+++|+.|++++|...+..|....+++|+.|++++|..-.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~--- 839 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR--- 839 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc---
Confidence 1111112233556666666654433 34444566666666666665433333333345556666665553210
Q ss_pred ceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcC
Q 046908 308 FFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLS 387 (551)
Q Consensus 308 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 387 (551)
.+|.. .++|+.|++++|.++ .+|.++ ..+++|+.|++++|+--..+|.....+++|+.++++
T Consensus 840 ---~~p~~---~~nL~~L~Ls~n~i~-~iP~si-----------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 840 ---TFPDI---STNISDLNLSRTGIE-EVPWWI-----------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ---ccccc---ccccCEeECCCCCCc-cChHHH-----------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 22221 235555555555554 444432 344455555555532222344445555555555555
Q ss_pred CC
Q 046908 388 NN 389 (551)
Q Consensus 388 ~n 389 (551)
+|
T Consensus 902 ~C 903 (1153)
T PLN03210 902 DC 903 (1153)
T ss_pred CC
Confidence 55
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-22 Score=208.98 Aligned_cols=262 Identities=22% Similarity=0.253 Sum_probs=189.3
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
.-..|+++++.++.+|..+. .+|+.|++++|.++ .+|. .+++|++|++++|.++. +|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-------------~LP~----lp~~Lk~LdLs~N~Lts-LP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-------------SLPA----LPPELRTLEVSGNQLTS-LPVL- 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-------------CCCC----CCCCCcEEEecCCccCc-ccCc-
Confidence 45678888888888887664 36888888888887 4553 24678888888888874 3432
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++|+.|++++|.+. .+|. . ..+|+.|++++|+++.. |. ..++|+.|++++|.++.++. +
T Consensus 261 --p~sL~~L~Ls~N~L~-~Lp~-l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---l------ 320 (788)
T PRK15387 261 --PPGLLELSIFSNPLT-HLPA-L---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---L------ 320 (788)
T ss_pred --ccccceeeccCCchh-hhhh-c---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---C------
Confidence 467888888888887 5664 2 35688888888888754 32 24678888888888875432 1
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
..+|+.|++++|.+++.+. ...+|+.|++++|+|+ .+|.. .++|+.|++++|++. .+|..
T Consensus 321 p~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls-------~LP~l---p~~L~~L~Ls~N~L~-~LP~l------ 380 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLA-------SLPTL---PSELYKLWAYNNRLT-SLPAL------ 380 (788)
T ss_pred cccccccccccCccccccc---cccccceEecCCCccC-------CCCCC---Ccccceehhhccccc-cCccc------
Confidence 2357778888888876543 1357888888888887 55543 256778888888887 45532
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
..+|+.|++++|.++ .+|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..
T Consensus 381 --------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 381 --------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred --------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhh
Confidence 246788899999888 45543 2578889999999884 4543 346788899999988 67888888
Q ss_pred CCCCCeEECCCCccccCCCC
Q 046908 426 LNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 426 l~~L~~l~l~~N~l~~~~~~ 445 (551)
++.|+.|++++|++++..+.
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCCeEECCCCCCCchHHH
Confidence 88999999999998876543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=204.43 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=20.6
Q ss_pred CceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 357 MAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 344555555554 44555555555555555555555444433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-20 Score=193.29 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=150.2
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+.+.|++++++++.+|..+. ++++.|++++|.++ .+|..++ ++|+.|++++|.++. +|..+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-------------sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-------------SLPENLQ---GNIKTLYANSNQLTS-IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-------------cCChhhc---cCCCEEECCCCcccc-CChhh
Confidence 56778888888877776543 46788888888777 5665553 477888888887773 45444
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
. .+|+.|++++|++. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|.++..+.. +
T Consensus 240 ~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~------l-- 302 (754)
T PRK15370 240 P--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH------L-- 302 (754)
T ss_pred h--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc------c--
Confidence 2 46777888888777 7776653 467777777777764 344332 4677777777777643221 1
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
.++|+.|++++|.++..+... .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 303 p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-------~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----- 365 (754)
T PRK15370 303 PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALT-------SLPASLP--PELQVLDVSKNQIT-VLPETL----- 365 (754)
T ss_pred hhhHHHHHhcCCccccCCccc--cccceeccccCCccc-------cCChhhc--CcccEEECCCCCCC-cCChhh-----
Confidence 135666677777766543322 356667777776665 4444432 56667777776665 444432
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc----ccCCCCCCEEeCCCCcCc
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES----FSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 416 (551)
.+.|+.|++++|.++ .+|..+. .+|+.|++++|+++ .+|.. +..++.+..|++.+|.++
T Consensus 366 --------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 --------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 135666666666666 3444433 24666666666665 33332 233456666666666654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=191.72 Aligned_cols=246 Identities=22% Similarity=0.327 Sum_probs=191.3
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
+...|+++++.++ .+|..+ .+.++.|++++|.++. +|..+. .+|+.|++++|+++ .+|..
T Consensus 179 ~~~~L~L~~~~Lt-------------sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~ 238 (754)
T PRK15370 179 NKTELRLKILGLT-------------TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPAT 238 (754)
T ss_pred CceEEEeCCCCcC-------------cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChh
Confidence 5688999999888 666554 3579999999999984 455443 58999999999998 88876
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN 288 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 288 (551)
+. ..|+.|++++|.+.. +|..+. .+|+.|++++|.++.++. .+ .++|+.|++++|+++..+...
T Consensus 239 l~---~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~------~l--~~sL~~L~Ls~N~Lt~LP~~l-- 302 (754)
T PRK15370 239 LP---DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPE------NL--PEELRYLSVYDNSIRTLPAHL-- 302 (754)
T ss_pred hh---ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCcccc------cc--CCCCcEEECCCCccccCcccc--
Confidence 53 579999999999874 455443 589999999999985432 12 258999999999998765432
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
.++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++
T Consensus 303 p~sL~~L~Ls~N~Lt-------~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l-------------~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 303 PSGITHLNVQSNSLT-------ALPETLP--PGLKTLEAGENALT-SLPASL-------------PPELQVLDVSKNQIT 359 (754)
T ss_pred hhhHHHHHhcCCccc-------cCCcccc--ccceeccccCCccc-cCChhh-------------cCcccEEECCCCCCC
Confidence 357999999999987 5565443 68999999999998 466543 257999999999998
Q ss_pred ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC----CCCCCCCeEECCCCccc
Q 046908 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL----TGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~L~~l~l~~N~l~ 440 (551)
.+|..+. ++|++|++++|+++. +|..+. ..|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 360 -~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 -VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5776553 689999999999994 455443 36999999999998 556543 34578899999999986
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=175.68 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=40.2
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCC---CCCEEECcCCcccc----cCCcccCCC-CCCCEEecccccccCcCCC
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCV---ALDLFDLSNNNFFG----QIFPKYMNL-THLHWLYLDNNHFSGKMDD 256 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~ 256 (551)
+..+++|+.|++++|.+.+..+.. +..+. +|++|++++|++.+ .....+..+ ++|+.|++++|.+++...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~- 154 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC- 154 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-
Confidence 344445555555555443222211 11122 25555555554432 111223333 555555555555543111
Q ss_pred chhhHhhccCCCCCEEECCCCccc
Q 046908 257 ANILVQLSQLKSLELIDIFENSLS 280 (551)
Q Consensus 257 ~~~~~~~~~l~~L~~L~l~~n~l~ 280 (551)
..+...+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCc
Confidence 123334445555555555555554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-19 Score=176.66 Aligned_cols=264 Identities=22% Similarity=0.223 Sum_probs=139.1
Q ss_pred cCCccEEEccCCccccc----CCcccccCCCCcEEECcCCccceeCCh------hhhhCCCCCCEEECcCCcccccCCcc
Q 046908 164 LQKLIYLDMPKNIFEGD----IPYSIGEMKELYMQDLSRNNFSGELPQ------PIVSGCVALDLFDLSNNNFFGQIFPK 233 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~ 233 (551)
+..|+.++++++.++.. ++..+...+.++.++++++.+.+ .+. ..+..+++|+.|++++|.+....+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 44455555555554321 23334455566667766665541 111 23344778888888888776544444
Q ss_pred cCCCCC---CCEEecccccccCcCCCchhhHhhccC-CCCCEEECCCCcccccCCC----cc-cccccceeecccccccc
Q 046908 234 YMNLTH---LHWLYLDNNHFSGKMDDANILVQLSQL-KSLELIDIFENSLSGSLVS----SF-NLSSVKHLYLQKNAITG 304 (551)
Q Consensus 234 ~~~l~~---L~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~----~~-~~~~L~~L~L~~n~l~~ 304 (551)
+..+.+ |++|++++|.+.... ...+...+..+ ++|+.|++++|.+++.... .+ .+++|++|++++|.+++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 444433 888888888776311 11233445566 7778888888777632211 12 44567777777776652
Q ss_pred CccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc-----CCC
Q 046908 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG-----QLQ 379 (551)
Q Consensus 305 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~ 379 (551)
. ....++..+..+++|++|++++|.+.+.....+. ..+..+++|+.|++++|.+++.....+. ..+
T Consensus 180 ~--~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 180 A--GIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred H--HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 1 0112233344455677777777766532222211 1234556666666666666542222211 135
Q ss_pred CCcEEEcCCCCCCCc----ccccccCCCCCCEEeCCCCcCccc----CCCCCCCC-CCCCeEECCCCc
Q 046908 380 NIRALNLSNNFLSGA----IPESFSNLKMTESLDLSHNRLSGH----IPPQLTGL-NFLSNFNVSYNN 438 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l-~~L~~l~l~~N~ 438 (551)
.|++|++++|.++.. +...+..+++|+.+++++|.++.. ....+... +.|+.+++.+|+
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 666666666666521 223344456666666666666532 22223333 455566655554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-19 Score=145.08 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=122.6
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+-+.++++.|.||+|+++ ..|..++.+.+|+.|++++|+|. .+|.+++.+++|+.|+++-|.+. ..| ..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp-rgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP-RGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc-cccCCCchh
Confidence 445677888999999998 55666889999999999999999 88888999999999998887765 333 457888888
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
+.|++.+|+......++.|..++.|+.|.+++|.+..+|..++++++|+.|.+.+|++- ++|.+++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-------------~lpkeig~ 171 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-------------SLPKEIGD 171 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-------------hCcHHHHH
Confidence 88888888877777777777777888888888888888887888888888877777776 66666664
Q ss_pred hcCCccEEEccCCccc
Q 046908 163 VLQKLIYLDMPKNIFE 178 (551)
Q Consensus 163 ~l~~L~~L~L~~n~~~ 178 (551)
++.|++|.+.+|+++
T Consensus 172 -lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 172 -LTRLRELHIQGNRLT 186 (264)
T ss_pred -HHHHHHHhcccceee
Confidence 555666666666555
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-19 Score=143.94 Aligned_cols=155 Identities=25% Similarity=0.434 Sum_probs=86.5
Q ss_pred CCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
.+.+++.|.+++|+++.+++ ....+.+|+.|++++|++.+.+...-.+++|+.|++.-|++. ..|.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp------nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-------~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP------NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-------ILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCC------cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-------cCccc
Confidence 45556666666666663333 255666666666666666665555446666666666666655 55666
Q ss_pred ccccCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc
Q 046908 316 INELSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA 394 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 394 (551)
|+.+|.|+.||+++|++.. .+|.. |-.+..|+.|+|++|.+. .+|...+++++|+.|.+..|.+. .
T Consensus 98 fgs~p~levldltynnl~e~~lpgn-----------ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGN-----------FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcc-----------hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 6666666666666665542 22322 233344455555555554 45555555555555555555554 3
Q ss_pred ccccccCCCCCCEEeCCCCcCc
Q 046908 395 IPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 395 ~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.|..++.+..|++|.+.+|+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee
Confidence 4444555555555555555555
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-14 Score=150.68 Aligned_cols=118 Identities=35% Similarity=0.582 Sum_probs=104.0
Q ss_pred cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCC--ccCCccCCcccCCCCCCCCccccCCCC
Q 046908 436 YNNLSGPTPDK--EQFATFDESSYTGNHELCGSLIRKKCS 473 (551)
Q Consensus 436 ~N~l~~~~~~~--~~~~~~~~~~~~~n~~~c~~~~~~~c~ 473 (551)
+|+++|.+|.. ........+.+.+|+..|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999998873 222344567889999999876555564
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-13 Score=126.63 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=44.6
Q ss_pred hhccccCceEecCCCcCccc----CCccccCCCCCcEEEcCCCCCCCccccc----c-cCCCCCCEEeCCCCcCccc---
Q 046908 351 YSNLKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFLSGAIPES----F-SNLKMTESLDLSHNRLSGH--- 418 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~~--- 418 (551)
|..++.|+.|||.+|-++.. +...++.+++|++|++++|.+...-..+ + ...|+|+.|.+.+|.|+..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 44555555555555555421 2233444555666666666554322111 1 2356666666666666531
Q ss_pred -CCCCCCCCCCCCeEECCCCcc
Q 046908 419 -IPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 419 -~p~~~~~l~~L~~l~l~~N~l 439 (551)
+-..+...+.|..|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 112233355666666666666
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-13 Score=125.22 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=117.1
Q ss_pred ccCCCCccEEEccCCCCC-----CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCC
Q 046908 101 WHPTSQLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN 175 (551)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n 175 (551)
..+...++.+++++|.++ .+...+.+.++|+..++|+-- +|.. ...+|..+..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~--------~~Ei~e~L~~------------- 83 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRL--------KDEIPEALKM------------- 83 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCc--------HHHHHHHHHH-------------
Confidence 345567888888888873 344556667778877777531 1111 1133332211
Q ss_pred cccccCCcccccCCCCcEEECcCCccceeCCh---hhhhCCCCCCEEECcCCcccccCC-------------cccCCCCC
Q 046908 176 IFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ---PIVSGCVALDLFDLSNNNFFGQIF-------------PKYMNLTH 239 (551)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~ 239 (551)
+..++..+++|+++|||+|.+....+. .+.+.+..|++|.|.+|.+....- .....-+.
T Consensus 84 -----l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 84 -----LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred -----HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 111222333444444444444322111 112234444444444444332111 11223345
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccccc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINEL 319 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l 319 (551)
|+.+..++|++.... ...+...|...+.|+.+.++.|.+...... .+..++.++
T Consensus 159 Lrv~i~~rNrlen~g-a~~~A~~~~~~~~leevr~~qN~I~~eG~~-------------------------al~eal~~~ 212 (382)
T KOG1909|consen 159 LRVFICGRNRLENGG-ATALAEAFQSHPTLEEVRLSQNGIRPEGVT-------------------------ALAEALEHC 212 (382)
T ss_pred eEEEEeecccccccc-HHHHHHHHHhccccceEEEecccccCchhH-------------------------HHHHHHHhC
Confidence 555555555553221 113444455555555555555544322111 122334455
Q ss_pred CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc-----cCCCCCcEEEcCCCCCCCc
Q 046908 320 SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-----GQLQNIRALNLSNNFLSGA 394 (551)
Q Consensus 320 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~ 394 (551)
++|++|||++|.++......++ ..+..++.|++|++++|.+......+| ...++|++|.+.+|.|+..
T Consensus 213 ~~LevLdl~DNtft~egs~~La-------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALA-------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred CcceeeecccchhhhHHHHHHH-------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 5555555555555422222221 123445555566666655543332222 2245666666666666532
Q ss_pred ----ccccccCCCCCCEEeCCCCcC
Q 046908 395 ----IPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 395 ----~~~~~~~l~~L~~L~l~~n~l 415 (551)
+.......+.|+.|+|++|++
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCcccc
Confidence 112234456667777777766
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-13 Score=134.21 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=138.5
Q ss_pred EECcCCccceeCChhhhh-CCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEE
Q 046908 194 QDLSRNNFSGELPQPIVS-GCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272 (551)
Q Consensus 194 L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 272 (551)
|.|++-++. ++|...+. .+..-...|++.|++. ..|..+..+..|+.+.+..|.+. .+|.....+..|.++
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r------~ip~~i~~L~~lt~l 126 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR------TIPEAICNLEALTFL 126 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce------ecchhhhhhhHHHHh
Confidence 344444554 55554432 2334456677777776 34566666777777777777776 455557777778888
Q ss_pred ECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhh
Q 046908 273 DIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYS 352 (551)
Q Consensus 273 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~ 352 (551)
|++.|+++..+...+.+ -|+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..+ .
T Consensus 127 ~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~-------~lp~~ig~~~tl~~ld~s~nei~-slpsql-----------~ 186 (722)
T KOG0532|consen 127 DLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT-------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-----------G 186 (722)
T ss_pred hhccchhhcCChhhhcC-cceeEEEecCccc-------cCCcccccchhHHHhhhhhhhhh-hchHHh-----------h
Confidence 88888777766665533 3677777777777 67777777777777777777776 556554 4
Q ss_pred ccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC---CCC
Q 046908 353 NLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL---NFL 429 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L 429 (551)
++.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+.-. .-.
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF 262 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence 5556677777777776 556666643 4777777777777 66777777777777777777776 444433221 224
Q ss_pred CeEECCCC
Q 046908 430 SNFNVSYN 437 (551)
Q Consensus 430 ~~l~l~~N 437 (551)
++|+.+-+
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 45555555
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=128.13 Aligned_cols=113 Identities=35% Similarity=0.569 Sum_probs=101.7
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
.++.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-----------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-----------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHH-----------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 37889999999999999875 6678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~ 444 (551)
++++|+.|+|++|++++.+|..+... ..+..+++.+|+..|..|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999887764 467789999998766544
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-13 Score=129.19 Aligned_cols=198 Identities=27% Similarity=0.361 Sum_probs=150.9
Q ss_pred EEccCCCCCCCchhh--hCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 110 LKLSDCHLHVIPSFL--LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 110 L~l~~n~l~~l~~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
|.|++-.+..+|... ..+..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|.++.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-------------elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~ 119 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-------------ELPEEACA-FVSLESLILYHNCIR-TIPEAICN 119 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-------------cCchHHHH-HHHHHHHHHHhccce-ecchhhhh
Confidence 445555555555322 33444566788888877 77776665 567888888888887 67778888
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+..|+.+|++.|++. .+|..++. --|+.|.+++|+++ ..|..++..+.|..|+.+.|.+. .++..+.++.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------slpsql~~l~ 189 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------SLPSQLGYLT 189 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------hchHHhhhHH
Confidence 888899999999887 78877753 34888888888886 45666778888888999988887 5666788888
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhh
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 341 (551)
+|+.|.+..|.+...++... .-.|..||++.|+++ .+|..|.+|+.|++|-|.+|++. .-|..+|
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-------ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 89888888888887776654 456888899999888 88888999999999999999887 6666654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-12 Score=120.31 Aligned_cols=212 Identities=25% Similarity=0.250 Sum_probs=120.0
Q ss_pred CCCCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cc
Q 046908 213 CVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NL 289 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~ 289 (551)
+.+|+.+.|.+..+..... .....|++++.||++.|-+.... .+..-...+++|+.|+++.|++........ .+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~---~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF---PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH---HHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4445555555554432211 23345666666666666554322 223334556677777777776654333332 56
Q ss_pred cccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc
Q 046908 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369 (551)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~ 369 (551)
+.|+.|.|+.|.++- ..+......+|+|+.|++..|.....-. ..+..+..|++|||++|++.+
T Consensus 197 ~~lK~L~l~~CGls~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~-----------~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-----KDVQWILLTFPSLEVLYLEANEIILIKA-----------TSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred hhhheEEeccCCCCH-----HHHHHHHHhCCcHHHhhhhcccccceec-----------chhhhhhHHhhccccCCcccc
Confidence 777777777776651 1222334456777777777774211100 012445567778888877763
Q ss_pred cC-CccccCCCCCcEEEcCCCCCCCcc-ccc-----ccCCCCCCEEeCCCCcCccc-CCCCCCCCCCCCeEECCCCcccc
Q 046908 370 EI-PREIGQLQNIRALNLSNNFLSGAI-PES-----FSNLKMTESLDLSHNRLSGH-IPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 370 ~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
.. ....+.++.|+.|+++.+.+.++- |+. ...+++|+.|++++|++... .-..+..+++|+.+.+..|++..
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 21 134566778888888888776542 222 34577888888888888532 11234455667777777777764
Q ss_pred CC
Q 046908 442 PT 443 (551)
Q Consensus 442 ~~ 443 (551)
.-
T Consensus 341 e~ 342 (505)
T KOG3207|consen 341 ET 342 (505)
T ss_pred cc
Confidence 43
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=104.12 Aligned_cols=105 Identities=27% Similarity=0.292 Sum_probs=38.2
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHW 242 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 242 (551)
+.+|+.|++++|.+.... .+..+++|+.|++++|+++ .++..+...+++|+.|++++|++.... -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 445555555555555332 3555677777777777776 555444344667777777777665422 234455666666
Q ss_pred EecccccccCcCCCchhhHhhccCCCCCEEE
Q 046908 243 LYLDNNHFSGKMDDANILVQLSQLKSLELID 273 (551)
Q Consensus 243 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 273 (551)
|++.+|++..... .-...+..+|+|+.||
T Consensus 118 L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEKKN--YRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGSTT--HHHHHHHH-TT-SEET
T ss_pred eeccCCcccchhh--HHHHHHHHcChhheeC
Confidence 6666666654322 2233345566666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-12 Score=121.41 Aligned_cols=161 Identities=24% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCCCCCEEEcccCcCccccc-hhccCCCCCCEeeCCCCccccccChh-hhcCCCCCCEEEcccCcccccccCCCccCCCC
Q 046908 29 NLTHLKVLDISNNQLSGKVP-STLTNLTSLEYLDRFSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHPTSQ 106 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 106 (551)
++.+|+...|.+..+..... +....+++++.|||++|-+....+.- ....+++|+.|+++.|....-.....-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44555555555555442111 23445555555555555544333221 12344555555555544332222222224456
Q ss_pred ccEEEccCCCCC--CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccC-Cc
Q 046908 107 LKVLKLSDCHLH--VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI-PY 183 (551)
Q Consensus 107 L~~L~l~~n~l~--~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~-~~ 183 (551)
|+.|.++.|+++ .+-..+..+++|+.|+|..|..... ...+.. .+..|+.|||++|.+.... -.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~~~~---i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------KATSTK---ILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------ecchhh---hhhHHhhccccCCccccccccc
Confidence 777777777773 3334455566666666666632100 011111 1345666666666654322 12
Q ss_pred ccccCCCCcEEECcCCccc
Q 046908 184 SIGEMKELYMQDLSRNNFS 202 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~ 202 (551)
..+.++.|+.|+++.+.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred ccccccchhhhhccccCcc
Confidence 3344555555555555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-11 Score=121.63 Aligned_cols=199 Identities=34% Similarity=0.433 Sum_probs=109.0
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCC-CCCEEecccccccCcCCCchhhHhhccCCCCC
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT-HLHWLYLDNNHFSGKMDDANILVQLSQLKSLE 270 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~ 270 (551)
..++++.+.+...+.. . ...+.++.|++.+|.++.+. ....... +|+.|++++|.+.. ++.....+++|+
T Consensus 96 ~~l~~~~~~~~~~~~~-~-~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~------l~~~~~~l~~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSNISE-L-LELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES------LPSPLRNLPNLK 166 (394)
T ss_pred ceeeccccccccCchh-h-hcccceeEEecCCcccccCc-cccccchhhcccccccccchhh------hhhhhhcccccc
Confidence 3566666666312222 2 12456777777777776443 2333342 67777777777763 323466677777
Q ss_pred EEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHh
Q 046908 271 LIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF 350 (551)
Q Consensus 271 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~ 350 (551)
.|++++|.++.........+.|+.|++++|+++ .+|........|+++.+++|++. ..+..
T Consensus 167 ~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~----------- 227 (394)
T COG4886 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-------DLPPEIELLSALEELDLSNNSII-ELLSS----------- 227 (394)
T ss_pred ccccCCchhhhhhhhhhhhhhhhheeccCCccc-------cCchhhhhhhhhhhhhhcCCcce-ecchh-----------
Confidence 777777777665554335666666666666665 45554444445666666666432 22222
Q ss_pred hhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC
Q 046908 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 421 (551)
+..+.++..+.+.+|++. ..+..+..++++++|++++|.++.... +..+.+|+.|++++|.+....|.
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 133444555555555554 224445555556666666666553322 55555566666666655544433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-11 Score=119.37 Aligned_cols=199 Identities=33% Similarity=0.399 Sum_probs=110.4
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCC-CCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 169 YLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV-ALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
.+++..+.+... ......++.++.|++.+|.++ .++.... ... +|+.|++++|.+... +..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 455555555321 223334456666666666666 5555432 132 666666666666532 23455666666666666
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|++.. ++......++|+.|++++|++...+...-....|+++.+++|.+. ..+..+..+.++..+.+
T Consensus 173 N~l~~------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-------~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 173 NDLSD------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-------ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred chhhh------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-------ecchhhhhccccccccc
Confidence 66653 222233566666666666666665543222344666666666432 44555556666666666
Q ss_pred cCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 328 RGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 328 ~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
.+|++.. .+.. ...+++++.|++++|.++ .++. +..+.+++.|++++|.++...+..
T Consensus 240 ~~n~~~~-~~~~-----------~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 240 SNNKLED-LPES-----------IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CCceeee-ccch-----------hccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 6666552 1222 244555666666666666 2332 566666666666666666555443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-11 Score=101.67 Aligned_cols=126 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCEEEcccCcCccccchhcc-CCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLT-NLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVL 110 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 110 (551)
++++|+|++|.|+.+. .++ .+.+|+.|++++|.+... +.+..+++|++|++++|.+.. +.......+++|++|
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 4444444444444221 122 234444444444444422 123444444455554444322 111111235566666
Q ss_pred EccCCCCCCCc--hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEcc
Q 046908 111 KLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP 173 (551)
Q Consensus 111 ~l~~n~l~~l~--~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~ 173 (551)
++++|++..+. ..+..+++|+.|++.+|+++.. + .....+...+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~---------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K---------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T---------THHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h---------hHHHHHHHHcChhheeCCE
Confidence 66666664332 3455667777777777766521 0 1223444457777777754
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-11 Score=110.95 Aligned_cols=185 Identities=23% Similarity=0.230 Sum_probs=105.6
Q ss_pred CCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCC-----------------------Cc
Q 046908 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV-----------------------SS 286 (551)
Q Consensus 230 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~ 286 (551)
.+..+.-+.+|+++.++.+.-..+..- ...-+.|+++...+..++.... ..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~------~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~ 279 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDI------ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVS 279 (490)
T ss_pred cccchHHhhhhheeeeeccchhheece------eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEe
Confidence 334445567788888877654432211 2233566666665544332110 00
Q ss_pred c-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC
Q 046908 287 F-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN 365 (551)
Q Consensus 287 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n 365 (551)
. ....|++++|++|.|+ .+.++..-.|.++.|++++|.+. .+.. +..+++|+.||||+|
T Consensus 280 ~dTWq~LtelDLS~N~I~-------~iDESvKL~Pkir~L~lS~N~i~-~v~n------------La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-------QIDESVKLAPKLRRLILSQNRIR-TVQN------------LAELPQLQLLDLSGN 339 (490)
T ss_pred cchHhhhhhccccccchh-------hhhhhhhhccceeEEecccccee-eehh------------hhhcccceEeecccc
Confidence 1 2455667777777666 45555555667777777777665 2111 244566677777777
Q ss_pred cCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCccccCC
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~ 443 (551)
.++ .+.++-..+.+.++|.|++|.|... ..+..+-+|..||+++|+|.... -..+.++|.|+.+.|.+|++.+.+
T Consensus 340 ~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 340 LLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 666 4444445566667777777766522 33555666677777777765322 235666677777777777776544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-11 Score=107.40 Aligned_cols=130 Identities=24% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
.+.|+++||++|.|+ .+.+.+ .-.+.++.|++++|.+.... .++.+++|+.||+++|.++.. -.+-..+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~------~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC------VGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh------hhhHhhhc
Confidence 344555555555555 444443 23455555555555554332 245555566666665555421 12233455
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCccc
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 333 (551)
+.+.|.+++|.+..... .-.+-+|..|++++|+|...+ --..++.+|.|+.+.+.+|++.
T Consensus 353 NIKtL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ld-----eV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELD-----EVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhhhhh-hHhhhhheeccccccchhhHH-----HhcccccccHHHHHhhcCCCcc
Confidence 55555565555443211 013445566666666554110 1123566677777777777765
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-10 Score=81.26 Aligned_cols=61 Identities=41% Similarity=0.606 Sum_probs=55.2
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 67 (551)
|+|++|++++|+++.+.+++|.++++|++|++++|.++...+++|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6789999999999988888999999999999999999988888999999999999998864
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-10 Score=118.09 Aligned_cols=245 Identities=27% Similarity=0.279 Sum_probs=164.9
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+..++.+++..|.+.. .-..+..+++|+.+++.+|++. .+... ...+++|++|++++|.++... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 4455566666666653 2233566778888888888876 44432 234778888888888887643 35567778888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCC-cccccccceeeccccccccCccceeccCccccccCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVS-SFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
++++|.++.... +..++.|+.+++++|.+...... .-.+.+++.+++.+|.+.. ..++..+..+
T Consensus 146 ~l~~N~i~~~~~-------~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--------i~~~~~~~~l 210 (414)
T KOG0531|consen 146 NLSGNLISDISG-------LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE--------IEGLDLLKKL 210 (414)
T ss_pred eeccCcchhccC-------CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc--------ccchHHHHHH
Confidence 888888865432 55688888888888888876662 1267888888999887752 2334445556
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccc--cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK--YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+++..|.++..-+. ..+. .|+.+++++|.+. ..+..+..+..+..|++.+|++... ..+.
T Consensus 211 ~~~~l~~n~i~~~~~l-------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 211 VLLSLLDNKISKLEGL-------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred HHhhcccccceeccCc-------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccc
Confidence 6668888887632221 1122 2788899999887 4446677788899999999988744 3355
Q ss_pred CCCCCCEEeCCCCcCccc---CCCC-CCCCCCCCeEECCCCccccCCC
Q 046908 401 NLKMTESLDLSHNRLSGH---IPPQ-LTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~---~p~~-~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..+.+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 667778888888877622 1221 4555778888888888766544
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-10 Score=80.47 Aligned_cols=60 Identities=45% Similarity=0.608 Sum_probs=37.1
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcc
Q 046908 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 439 (551)
+|++|++++|+++.+.++.|.++++|++|++++|+++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655555666666666666666653
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.8e-10 Score=118.73 Aligned_cols=280 Identities=20% Similarity=0.205 Sum_probs=172.2
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCc--ccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNK--VVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
...+.+.+-+|.+..++... .+++|++|-+.+|. +. .++..+|..++.|+.|||++|.--+.+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~-------------~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL-------------EISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh-------------hcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 46777777777776665433 33478888888885 44 6778888889999999999988878899
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ 262 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 262 (551)
..++++-+|++|++++..+. .+|..+ ..+..|.+|++..+.-....+.....+++|++|.+....... +......
T Consensus 589 ~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~e 663 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKE 663 (889)
T ss_pred hHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHh
Confidence 99999999999999999998 899887 458899999999887655567777779999999997765221 1133344
Q ss_pred hccCCCCCEEECCCCcccccCCCcccccccc----eeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 263 LSQLKSLELIDIFENSLSGSLVSSFNLSSVK----HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 263 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
+..+.+|+.+....... ........+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+......
T Consensus 664 l~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-------~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-------TLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-------eeecccccccCcceEEEEcCCCchhhcc
Confidence 56666666666644433 1111111233333 3333332222 4556677889999999999887632221
Q ss_pred hhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 339 ~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
..+..... . ..+++..+...++... ..+......++|+.|.+..+.....+......+..++.+-+..+.+.+
T Consensus 736 ~~~~~~~~---~--~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 736 WEESLIVL---L--CFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccccchh---h--hHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 11111000 0 0112222222222111 111122234677777777776655544444555555555555555543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-10 Score=113.96 Aligned_cols=64 Identities=30% Similarity=0.270 Sum_probs=28.5
Q ss_pred cccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc---cccc-ccCCCCCCEEeCCCCcCcccC
Q 046908 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA---IPES-FSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~l~~n~l~~~~ 419 (551)
+..+..|++.+|.+... ..+...+.+..+....|.+... .... ....+.++.+.+..|.+....
T Consensus 254 ~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 34444445544444311 1122334444445555544311 1111 344566666666666665443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-09 Score=112.59 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc-ccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccE
Q 046908 31 THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF-QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKV 109 (551)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 109 (551)
...++..+-+|.+. ..+... ..++|++|-+..|.. ...++...|..++.|+.||+++|.....+|. .+..+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhc
Confidence 55566666666655 333322 223566665555541 2234444455566666666655443333333 3444555555
Q ss_pred EEccCCCCCCCchhhhCCCCCCEEEccCCc
Q 046908 110 LKLSDCHLHVIPSFLLQHYHLIFLDLSNNK 139 (551)
Q Consensus 110 L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~ 139 (551)
|+++++.+..+|..+.++..|.+|++..+.
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred ccccCCCccccchHHHHHHhhheecccccc
Confidence 555555555555555555555555555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-10 Score=102.67 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=120.1
Q ss_pred CCCCEEECcCCCCcc-cCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccC-hhhhcCCCCCCE
Q 046908 7 KNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTIS-INSLANHSKLEV 84 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~ 84 (551)
..|++||||+..|+. ..-..++.+.+|+.|+|.++++.+.+...+.+-.+|+.|+++.++-..... .-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358999999988873 233457789999999999999999888999999999999998865332322 234678999999
Q ss_pred EEcccCcccccccCCCccC-CCCccEEEccCCCC----CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChh
Q 046908 85 LLISSGSNMLQVKTETWHP-TSQLKVLKLSDCHL----HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRN 159 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l----~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~ 159 (551)
|+++++............. -.+|+.|+++++.- +.+..-..++++|.+||||+|..-. ...-..
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-----------~~~~~~ 333 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-----------NDCFQE 333 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-----------chHHHH
Confidence 9999998665443222222 23788899988763 3344455678888889988874320 011122
Q ss_pred HhhhcCCccEEEccCCcccccCCcc---cccCCCCcEEECcC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYS---IGEMKELYMQDLSR 198 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~L~~ 198 (551)
++ .++.|++|.++.|-. ++|.. +...+.|.+||+-+
T Consensus 334 ~~-kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 334 FF-KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HH-hcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 22 366777777777642 33332 33456666666544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-10 Score=114.57 Aligned_cols=129 Identities=28% Similarity=0.260 Sum_probs=88.0
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
.-.|...+.++|.++ .+..++.-++.|+.|+|++|+++.. ..+..++.|+.|||++|.+.
T Consensus 163 Wn~L~~a~fsyN~L~-------~mD~SLqll~ale~LnLshNk~~~v-------------~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-------LMDESLQLLPALESLNLSHNKFTKV-------------DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hhhHhhhhcchhhHH-------hHHHHHHHHHHhhhhccchhhhhhh-------------HHHHhcccccccccccchhc
Confidence 445666777777776 4556666677888888888887621 12467788888888888887
Q ss_pred ccCCc-cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCcccc
Q 046908 369 GEIPR-EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 369 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
.+|. ...++. |+.|++++|.++.. ..+.++.+|+.||+++|-|++-- -..+..+..|+.|.|.+|++.+
T Consensus 223 -~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 223 -HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3332 233444 88888888888743 33667888888888888876421 1234455678888888888854
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-09 Score=109.86 Aligned_cols=126 Identities=26% Similarity=0.209 Sum_probs=73.3
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
+|...+.+.|.+. ....++.-++.++.|+|++|+++ .+. ....++.|++|||++|.+.....-.-.++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4555666666655 23334455566666666666665 332 334466666777776666543322223333 667777
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeeccccccc
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~ 303 (551)
++|.++.. .++.++.+|+.||+++|-+.+...-.+ .+..|++|+|.+|.+.
T Consensus 240 rnN~l~tL-------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL-------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh-------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77766432 225666677777777776666544333 5667777777777664
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-09 Score=96.18 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccccc-ccCcCCCchhhHhhccCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNH-FSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~ 268 (551)
.|+.+||++..++..--..+.+.|.+|+.|.+.++++.+.+...+..-.+|+.++|+.+. ++.. ..-..+.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhhh
Confidence 466666666665533333445556666666666666666555556666666666666542 2111 22233556666
Q ss_pred CCEEECCCCcccccCCCcc---cccccceeecccc
Q 046908 269 LELIDIFENSLSGSLVSSF---NLSSVKHLYLQKN 300 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n 300 (551)
|..|+++.|.+........ --+.|+.|+++++
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 6666666665543322222 2345555555554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-08 Score=88.86 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCCcEEEcCCCCCCCccc-c----cc--cCCCCCCEEeCCCCcCc
Q 046908 379 QNIRALNLSNNFLSGAIP-E----SF--SNLKMTESLDLSHNRLS 416 (551)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~-~----~~--~~l~~L~~L~l~~n~l~ 416 (551)
++|..|...+|.+.+.+- . .| ..+|-|..|-+.+|++.
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 455555555554432211 1 11 24566666777777775
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-07 Score=85.08 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=50.1
Q ss_pred CCCCCEEECcCCcccccC----CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-
Q 046908 213 CVALDLFDLSNNNFFGQI----FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF- 287 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 287 (551)
-+.|+......|++..-. ...|....+|+++.+.+|.|....-..-+...+..+++|++||+.+|.++.......
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 345666666666554211 112333456777777777665332222334456677778888888777764433222
Q ss_pred ----cccccceeeccccccc
Q 046908 288 ----NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 288 ----~~~~L~~L~L~~n~l~ 303 (551)
.++.|++|.+.+|-++
T Consensus 236 ~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhcccchhhhccccchhhc
Confidence 3445666666666554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-07 Score=83.00 Aligned_cols=188 Identities=19% Similarity=0.123 Sum_probs=87.5
Q ss_pred CCCCCEEECcCCcccc--cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--c
Q 046908 213 CVALDLFDLSNNNFFG--QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--N 288 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~ 288 (551)
++.++.+||.+|.++. .+...+.++|.|++|+|+.|++...... .| ..+.+|++|-+.+..+.......+ .
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4455566666665543 1222344566666666666665543221 11 234455566555555443333333 5
Q ss_pred ccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc
Q 046908 289 LSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368 (551)
Q Consensus 289 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 368 (551)
+|.+++|+++.|.+..-+.-...+ +. .-+.+++++...|.... -...+++ -...|++..+.+..|++.
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~-e~--~s~~v~tlh~~~c~~~~--w~~~~~l-------~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCI-ED--WSTEVLTLHQLPCLEQL--WLNKNKL-------SRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred chhhhhhhhccchhhhhccccccc-cc--cchhhhhhhcCCcHHHH--HHHHHhH-------HhhcccchheeeecCccc
Confidence 566666666666332100000000 00 01234444444443220 0000111 133455566666666554
Q ss_pred ccC-CccccCCCCCcEEEcCCCCCCCcc-cccccCCCCCCEEeCCCCcCcc
Q 046908 369 GEI-PREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 369 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
+.- -+.+..++.+-.|+|+.|+|..-. -+++.+++.|..|.+++|.+..
T Consensus 213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 321 233445566666777777765321 2456667777777777776653
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-07 Score=84.47 Aligned_cols=86 Identities=24% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCCCEeeCCCCccccccChh-hhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC--CCCchhhhCCCC
Q 046908 53 NLTSLEYLDRFSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL--HVIPSFLLQHYH 129 (551)
Q Consensus 53 ~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~l~~~~~~~~~ 129 (551)
..+.++.+||.+|.++.+-... .+.++|.|++|+++.|.+...+.... .+..+|+.|-|.+..+ +.....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3456666777776666443322 24566667777776666554444321 3455677777777666 344445556666
Q ss_pred CCEEEccCCc
Q 046908 130 LIFLDLSNNK 139 (551)
Q Consensus 130 L~~L~Ls~n~ 139 (551)
+++|.+|.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.7e-08 Score=78.17 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=44.0
Q ss_pred ccCceEecCCCcCcccCCcccc-CCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 355 KYMAGLDLSSNELSGEIPREIG-QLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
..|+..+|++|.+. .+|+.|. ..+.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 44445555555555 3333332 2335555666666665 33444555666666666666655 4455555555555556
Q ss_pred CCCCccc
Q 046908 434 VSYNNLS 440 (551)
Q Consensus 434 l~~N~l~ 440 (551)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-07 Score=75.49 Aligned_cols=108 Identities=28% Similarity=0.438 Sum_probs=70.2
Q ss_pred CccEEEccCCCCCCCch---hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 106 QLKVLKLSDCHLHVIPS---FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
.+..++|+.|.+..++. .+...++|+..+|++|.+. .+|..+...++.++.+++++|.+. ..|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~neis-dvP 93 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNEIS-DVP 93 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhhhh-hch
Confidence 45566677777765554 3445556666777777776 666666665667777777777776 455
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 229 (551)
..+..++.|+.|+++.|.+. ..|..++. +.++-.|+..+|.+..+
T Consensus 94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARAEI 138 (177)
T ss_pred HHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhcCCCCccccC
Confidence 55777777777777777776 55555544 66666677666665543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=55.51 Aligned_cols=37 Identities=51% Similarity=0.739 Sum_probs=24.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCc
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS 44 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 44 (551)
++|++|++++|+|+. +|..++++++|+.|++++|.|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467777777777773 4445777777777777777776
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=71.08 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLK 111 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 111 (551)
+...+||++|.+.. -+.|..++.|.+|.++.|.++. +....-..+++|..|.+.+|.+..-.+.+-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 33444444444431 1123444444444444444442 22222233344444444444433333333445555666666
Q ss_pred ccCCCCCCCch----hhhCCCCCCEEEccCC
Q 046908 112 LSDCHLHVIPS----FLLQHYHLIFLDLSNN 138 (551)
Q Consensus 112 l~~n~l~~l~~----~~~~~~~L~~L~Ls~n 138 (551)
+-+|....-+. .+.++++|+.||.+.-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66666533321 3456666777766654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.2e-06 Score=69.86 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=60.3
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 243 (551)
.....+||++|.+... +.|..++.|.+|.+++|+|+ .+...+..-+++|..|.|.+|.+.... -.-+..+|.|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455666666665422 24556677777777777776 566555555666777777777664321 1234556666666
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN 277 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 277 (551)
.+-+|+++...... ...+..+++|++||++.-
T Consensus 119 tll~Npv~~k~~YR--~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYR--LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCce--eEEEEecCcceEeehhhh
Confidence 66666655432211 111445556666655543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.9e-06 Score=52.43 Aligned_cols=36 Identities=44% Similarity=0.680 Sum_probs=15.6
Q ss_pred CCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 380 NIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444455555555555444
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-05 Score=63.96 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=13.8
Q ss_pred hhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccC
Q 046908 74 NSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSD 114 (551)
Q Consensus 74 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 114 (551)
.+|.++++|+.+.+.. ....++..+|..+++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 3444555555554432 13334444444444444444444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=64.53 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=28.0
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
|..+++|+.+.+.. .+......+|..+++|+.+++.++ +. .++...|.++.+++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33344444444442 233333444444444444444432 33 34444444444444444433 2222233334444444
Q ss_pred CEEecc
Q 046908 241 HWLYLD 246 (551)
Q Consensus 241 ~~L~L~ 246 (551)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=71.64 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=39.5
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSFNLSS 291 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~ 291 (551)
+.+++.|++++|.+... |. -.++|++|.++++.-.. .+|..+ .++|+.|++++| .+... .++
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLt-----sLP~~L--P~nLe~L~Ls~Cs~L~sL------P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLT-----TLPGSI--PEGLEKLTVCHCPEISGL------PES 113 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcc-----cCCchh--hhhhhheEccCccccccc------ccc
Confidence 67788888888866543 31 12357888887643222 122112 246777777776 33321 234
Q ss_pred cceeeccccc
Q 046908 292 VKHLYLQKNA 301 (551)
Q Consensus 292 L~~L~L~~n~ 301 (551)
|+.|++..+.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 6666665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.5e-06 Score=82.59 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=83.8
Q ss_pred hhCCCCCCEEECcCCcc-cccCCccc-CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC--CC
Q 046908 210 VSGCVALDLFDLSNNNF-FGQIFPKY-MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL--VS 285 (551)
Q Consensus 210 ~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~ 285 (551)
..++..|+.|+.+++.- +.....++ .++.+|+.+.++.++--+. ..+...-.+.+.|+.+++.++...... ..
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 34566677777766532 21111222 3567777777777653111 011122345677777777776543221 11
Q ss_pred cc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCC
Q 046908 286 SF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364 (551)
Q Consensus 286 ~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~ 364 (551)
.. +++.|+++.+++|....+.++- .+...-..+..|+.+.+++++.... ..+. ....+++|+.+++-+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le--------~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITD--ATLE--------HLSICRNLERIELID 435 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchH--HHHH--------HHhhCcccceeeeec
Confidence 11 7888888888887643211000 1112234567788888888875411 1111 135677888888877
Q ss_pred CcCcc-c-CCccccCCCCCcEEE
Q 046908 365 NELSG-E-IPREIGQLQNIRALN 385 (551)
Q Consensus 365 n~l~~-~-~~~~~~~l~~L~~L~ 385 (551)
++-.. . +...-.+++++++..
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehh
Confidence 64321 1 122234555555543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.2e-05 Score=82.07 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCCEEEcccCcCcc-ccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 29 NLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
.+|.|+.|.+++-.+.. .......++++|..||+++.++... ..+..+++|+.|.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhcc
Confidence 45555555555544321 1222334555555555555554422 224444444444443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.7e-06 Score=80.01 Aligned_cols=63 Identities=27% Similarity=0.254 Sum_probs=27.3
Q ss_pred hccccCceEecCCCcCc-cc----CCccccCCCCCcEEEcCCCCCCC-cccccccCCCCCCEEeCCCCc
Q 046908 352 SNLKYMAGLDLSSNELS-GE----IPREIGQLQNIRALNLSNNFLSG-AIPESFSNLKMTESLDLSHNR 414 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~-~~----~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 414 (551)
.+++.|+.|.++++... +. ....-..+..|..+.|+++.... ..-+.+..+++|+.+++-+++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34555555555555332 11 01112334455555555554431 112233445555555555543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=69.76 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNN 138 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n 138 (551)
.+.+++.|++++|.+..+|. -..+|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENC 82 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCC
Confidence 35677777777777777772 2235777777664
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=6.4e-05 Score=79.87 Aligned_cols=111 Identities=27% Similarity=0.317 Sum_probs=79.6
Q ss_pred CCCCCCEEECcCCCCcc-cCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
.||.|++|.+++=.+.. .+..-..++|+|..||+|+..++.. ..+++|++|+.|.+.+-.+........+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 47899999988866542 2234466899999999999999954 66889999999988877766544455678899999
Q ss_pred EEEcccCcccccc-----cCCCccCCCCccEEEccCCCC
Q 046908 84 VLLISSGSNMLQV-----KTETWHPTSQLKVLKLSDCHL 117 (551)
Q Consensus 84 ~L~l~~n~~~~~~-----~~~~~~~l~~L~~L~l~~n~l 117 (551)
.||+|........ -.+.-..+|+|+.||.+++.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9999875433221 112234467777777777766
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=4e-05 Score=69.27 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc
Q 046908 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
.+.+.|+..++.++++ .....++.|++|.|+-|+++...+.. .|..|++|+|..|.|.+.+. -..+.
T Consensus 19 ~~vkKLNcwg~~L~DI-------sic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sldE-----L~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-------SICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLDE-----LEYLK 85 (388)
T ss_pred HHhhhhcccCCCccHH-------HHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHHH-----HHHHh
Confidence 3444555555554432 11345566666666666665543221 56667777777776652111 02245
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
++|+|+.|.|..|+..+..+.... ...+.-+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR------~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYR------RKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHH------HHHHHHcccchhcc
Confidence 667777777777776665554331 11235556666654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00021 Score=64.36 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcc--ccccChhhhcCCCCCCEEEcccCcccccccCCCccCC
Q 046908 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF--QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPT 104 (551)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 104 (551)
...+..|+.|++.+..++.. ..|-.|++|+.|.++.|.+ .+.+..- ...+++|+++++++|.+...-.......+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhh
Confidence 34455666666666655521 2355667777777777733 3333221 23447888888887775432222234566
Q ss_pred CCccEEEccCCCCCCCc----hhhhCCCCCCEEEcc
Q 046908 105 SQLKVLKLSDCHLHVIP----SFLLQHYHLIFLDLS 136 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~----~~~~~~~~L~~L~Ls 136 (551)
.+|..|++.+|..+.+- ..+.-+++|++||--
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 67888888888875543 245556778777643
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=5.6e-05 Score=68.33 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+.+.++|+.-++.+. .|. +...++.|++|.|+-|+++... .|..|++|++|+|..|.|..+ .-...+.+++
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl----dEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL----DELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH----HHHHHHhcCc
Confidence 334445555555554 222 2234556666666666665443 255666666666666666543 2233455666
Q ss_pred CCCEEECCCCcccccCCCcc------cccccceee
Q 046908 268 SLELIDIFENSLSGSLVSSF------NLSSVKHLY 296 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~ 296 (551)
+|+.|-|..|.-.+..+..+ .+|+|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666666665544443333 355555553
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00061 Score=61.48 Aligned_cols=85 Identities=25% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC--cccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN--SLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
...|+.+++.+..++... .|..+++|+.|.++.| .+.+-..... .+|+|+++++++|+|... .++
T Consensus 42 ~~~le~ls~~n~gltt~~-------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l----stl- 109 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL----STL- 109 (260)
T ss_pred ccchhhhhhhccceeecc-------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc----ccc-
Confidence 344445555554443321 2555667777777777 3333333222 557777777777776520 011
Q ss_pred ccccccCCCceEEecCCccc
Q 046908 314 YQINELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~ 333 (551)
..+..+.+|..|++.+|..+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 12344566667777776654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.00036 Score=72.67 Aligned_cols=237 Identities=20% Similarity=0.103 Sum_probs=125.6
Q ss_pred CCCCCCEEEcccCc-Cccc-cchhccCCCCCCEeeCCCC-cccccc---ChhhhcCCCCCCEEEcccCcccccccCCCc-
Q 046908 29 NLTHLKVLDISNNQ-LSGK-VPSTLTNLTSLEYLDRFSI-NFQGTI---SINSLANHSKLEVLLISSGSNMLQVKTETW- 101 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~- 101 (551)
.++.|+.|.+.++. +... .-.....+++|+.|+++++ ...... .......+.+|+.|+++++.......-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46778888887773 3321 2344566778888887752 111111 122345567888888887764332221112
Q ss_pred cCCCCccEEEccCCC-C--CCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccc
Q 046908 102 HPTSQLKVLKLSDCH-L--HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178 (551)
Q Consensus 102 ~~l~~L~~L~l~~n~-l--~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~ 178 (551)
..+++|+.|.+.+|. + ..+-.....++.|++|+++++..... ..+... ...+++++.+.+....-
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d----------~~l~~~-~~~c~~l~~l~~~~~~~- 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD----------SGLEAL-LKNCPNLRELKLLSLNG- 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH----------HHHHHH-HHhCcchhhhhhhhcCC-
Confidence 237789999888777 4 34455667788899999998754310 012222 33366666655433221
Q ss_pred ccCCcccccCCCCcEEECcCCccc--eeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEEecccccccCcCC
Q 046908 179 GDIPYSIGEMKELYMQDLSRNNFS--GELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWLYLDNNHFSGKMD 255 (551)
Q Consensus 179 ~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 255 (551)
+..++.+.+++.... +.........++.++.+.+..+...... ...+.+++.|+ ..+...
T Consensus 334 ---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------- 396 (482)
T KOG1947|consen 334 ---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------- 396 (482)
T ss_pred ---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-------
Confidence 334444444332221 1233344556778888887777643322 23445555552 222111
Q ss_pred CchhhHhhccCCCCCEEECCCCcccccCCCcc---cccccceeeccccc
Q 046908 256 DANILVQLSQLKSLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNA 301 (551)
Q Consensus 256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n~ 301 (551)
......++.|+++.+.......... .+..++.+++.++.
T Consensus 397 -------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 397 -------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred -------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 2222237777777765433222111 15566667666664
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.00064 Score=70.72 Aligned_cols=240 Identities=19% Similarity=0.061 Sum_probs=138.1
Q ss_pred cCCCCCCEeeCCCCccccccC-hhhhcCCCCCCEEEcccC-cccccc---cCCCccCCCCccEEEccCCC-CCC--Cchh
Q 046908 52 TNLTSLEYLDRFSINFQGTIS-INSLANHSKLEVLLISSG-SNMLQV---KTETWHPTSQLKVLKLSDCH-LHV--IPSF 123 (551)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~l~~n~-l~~--l~~~ 123 (551)
...+.|+.|.+.++....... ......++.|++|+++++ ...... .......+++|+.|+++.+. ++. +...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347889999887765443322 244678899999999863 221111 12244567899999999998 543 2233
Q ss_pred hhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccccc--CCcccccCCCCcEEECcCCc
Q 046908 124 LLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD--IPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 124 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~ 200 (551)
...+++|++|.+.++. ++. .--..+...++.|+.|+++++..... ......++++++.+.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~------------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD------------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred HhhCCCcceEccCCCCccch------------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 3448899999988776 442 22234555688999999998876421 22224446666665543322
Q ss_pred cceeCChhhhhCCCCCCEEECcCCcc---cccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCC-EEECCC
Q 046908 201 FSGELPQPIVSGCVALDLFDLSNNNF---FGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLE-LIDIFE 276 (551)
Q Consensus 201 l~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~-~L~l~~ 276 (551)
- +..++.+.+..... ..........+++++.+.+..+..... .....+.+++.|. .+.+..
T Consensus 333 ~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 333 G-----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL----GLELSLRGCPNLTESLELRL 397 (482)
T ss_pred C-----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc----chHHHhcCCcccchHHHHHh
Confidence 1 33444444443322 112233456889999999988874332 1123356666662 222111
Q ss_pred CcccccCCCcccccccceeeccccccccCccceeccCccccc-cCCCceEEecCCccc
Q 046908 277 NSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE-LSNLHVLLLRGNSLQ 333 (551)
Q Consensus 277 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~ 333 (551)
. ....++.|++..+.......+ ..... +..++.+++.++...
T Consensus 398 ~----------~~~~l~~L~l~~~~~~t~~~l-----~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 398 C----------RSDSLRVLNLSDCRLVTDKGL-----RCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred c----------cCCccceEecccCccccccch-----HHHhhhhhccccCCccCcccc
Confidence 1 122388888888864321100 11111 667888888887654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=5e-05 Score=77.10 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=41.1
Q ss_pred cccCceEecCCCcCccc----CCccccCCCC-CcEEEcCCCCCCCc----ccccccCC-CCCCEEeCCCCcCcccC----
Q 046908 354 LKYMAGLDLSSNELSGE----IPREIGQLQN-IRALNLSNNFLSGA----IPESFSNL-KMTESLDLSHNRLSGHI---- 419 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~---- 419 (551)
...++.|.+++|.++.. ....+...+. +..|++..|++.+. ....+..+ +.+++++++.|.++...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555566665555421 1112233333 45566666655432 11223333 45566666666665322
Q ss_pred CCCCCCCCCCCeEECCCCcc
Q 046908 420 PPQLTGLNFLSNFNVSYNNL 439 (551)
Q Consensus 420 p~~~~~l~~L~~l~l~~N~l 439 (551)
...+..++.++.+.+.+|++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 22334445566666666655
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0036 Score=33.55 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=9.3
Q ss_pred CCEEECcCCCCcccCCccCC
Q 046908 9 LFELDLSSNNFEGHIPQCLN 28 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~ 28 (551)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3333343
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0072 Score=32.35 Aligned_cols=22 Identities=45% Similarity=0.836 Sum_probs=15.5
Q ss_pred CCCEEEcccCcCccccchhccCC
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNL 54 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l 54 (551)
+|++|||++|.++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 666666543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.00022 Score=72.51 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCcEEECcCCccceeCChhh---hhCCCCCCEEECcCCcccccCC----cccCCC-CCCCEEecccccccCcCCCchhhH
Q 046908 190 ELYMQDLSRNNFSGELPQPI---VSGCVALDLFDLSNNNFFGQIF----PKYMNL-THLHWLYLDNNHFSGKMDDANILV 261 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~ 261 (551)
.+..+.|.+|.+.+.-...+ ......|+.|++++|.+.+... ..+... ..+++|++..|.++..... .+..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~-~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA-PLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH-HHHH
Confidence 36777888887764322222 2335567777777777653221 122222 4456666666666543322 4555
Q ss_pred hhccCCCCCEEECCCCccc
Q 046908 262 QLSQLKSLELIDIFENSLS 280 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~ 280 (551)
.+.....++.++++.|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccchhHHHHHhcccc
Confidence 5656666777777766653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.053 Score=26.84 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=6.0
Q ss_pred CccEEEccCCCCCCC
Q 046908 106 QLKVLKLSDCHLHVI 120 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l 120 (551)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554443
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.11 Score=29.05 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=10.2
Q ss_pred CCCCEEECcCCCCcccCCccC
Q 046908 7 KNLFELDLSSNNFEGHIPQCL 27 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~ 27 (551)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555553333333
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.11 Score=29.05 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=10.2
Q ss_pred CCCCEEECcCCCCcccCCccC
Q 046908 7 KNLFELDLSSNNFEGHIPQCL 27 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~ 27 (551)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555553333333
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.0043 Score=54.96 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred hccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+.++.+..|+++.|.+. ..|..+.+...++.+++.+|..+ ..|.++...++++.+++-.|.+.
T Consensus 62 s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 44444555555555554 45555555555555555555554 44555555555555555555543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.17 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCcEEECcCCccceeCChhhhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVS 211 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~ 211 (551)
++|+.|+|++|++. .+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 66665543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.17 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCcEEECcCCccceeCChhhhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVS 211 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~ 211 (551)
++|+.|+|++|++. .+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666666666666 66665543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.95 E-value=0.067 Score=46.69 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCccEEEccCCC-CCCC-chhhhCCCCCCEEEccC
Q 046908 104 TSQLKVLKLSDCH-LHVI-PSFLLQHYHLIFLDLSN 137 (551)
Q Consensus 104 l~~L~~L~l~~n~-l~~l-~~~~~~~~~L~~L~Ls~ 137 (551)
.++|+.|++++|. |+.- -..+.++++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3466666666554 3222 24566666666666655
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.23 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=6.2
Q ss_pred CCCceEEecCCccc
Q 046908 320 SNLHVLLLRGNSLQ 333 (551)
Q Consensus 320 ~~L~~L~l~~n~l~ 333 (551)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555554
|
... |
| >PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls | Back alignment and domain information |
|---|
Probab=84.42 E-value=0.81 Score=37.76 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 046908 504 FGASFVTVILGL 515 (551)
Q Consensus 504 ~~~~~~~~~~~~ 515 (551)
+++++|++++++
T Consensus 4 l~~iii~~i~l~ 15 (130)
T PF12273_consen 4 LFAIIIVAILLF 15 (130)
T ss_pred eHHHHHHHHHHH
Confidence 333333333333
|
Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.18 E-value=0.042 Score=48.95 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
...+.||++.|.+..+...+..++.+..||++.|.+. .+|..... ...+..+++..|..+ ..|.+
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-------------~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-------------FLPKDAKQ-QRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-------------hChhhHHH-HHHHHHHHhhccchh-hCCcc
Confidence 3444555555554444444444444555555555444 34443332 333444444444433 44555
Q ss_pred cccCCCCcEEECcCCc
Q 046908 185 IGEMKELYMQDLSRNN 200 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~ 200 (551)
+...++++++++.+|.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 5555555555555544
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=84.07 E-value=0.92 Score=25.31 Aligned_cols=14 Identities=57% Similarity=0.702 Sum_probs=7.8
Q ss_pred CCCCEEECcCCCCc
Q 046908 7 KNLFELDLSSNNFE 20 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~ 20 (551)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.27 E-value=0.15 Score=44.56 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhc-CCCCCCEEEcccCcccccccCCCccCCCCccEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLA-NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVL 110 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 110 (551)
.++.+|-++..|..+.-+-+.+++.++.|.+.++.-.+....+.++ ..++|+.|++++|..+++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4577777887777666666777777777776665543222222222 347888888888887766655556677788877
Q ss_pred EccC
Q 046908 111 KLSD 114 (551)
Q Consensus 111 ~l~~ 114 (551)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7655
|
|
| >PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host [] | Back alignment and domain information |
|---|
Probab=80.37 E-value=2.4 Score=25.80 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q 046908 504 FGASFVTVILGL 515 (551)
Q Consensus 504 ~~~~~~~~~~~~ 515 (551)
.+++++++++++
T Consensus 8 IIv~V~vg~~ii 19 (38)
T PF02439_consen 8 IIVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
|
This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain. |
| >PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world | Back alignment and domain information |
|---|
Probab=80.23 E-value=3.1 Score=39.50 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHhh
Q 046908 524 YWRRRWYVFAKILNLV 539 (551)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (551)
||||...+..+..|.|
T Consensus 280 RYRRKKKmkKKlQYiK 295 (299)
T PF02009_consen 280 RYRRKKKMKKKLQYIK 295 (299)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 3555444444544444
|
Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 551 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-37 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-04 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-28 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-04 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-19 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-09 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-105
Identities = 136/482 (28%), Positives = 200/482 (41%), Gaps = 67/482 (13%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLT-HLKVLDISNNQLSGKVPSTLTN--LTSLEY 59
+ ++ L LDLS N F G +P+ L NL+ L LD+S+N SG + L +L+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH- 118
L + F G I +L+N S+L L LS +L
Sbjct: 399 LYLQNNGFTGKIP-PTLSNCSELVSLH-------------------------LSFNYLSG 432
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
IPS L L L L N G++P+ + ++ L L + N
Sbjct: 433 TIPSSLGSLSKLRDLKLWLN------------MLEGEIPQELMY-VKTLETLILDFNDLT 479
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT 238
G+IP + L LS N +GE+P+ I L + LSNN+F G I + +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQ 298
L WL L+ N F+G I + + + + N K +
Sbjct: 539 SLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANFIAGKRYVYI---KNDGMKKECHGA 590
Query: 299 KNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMA 358
N +F G Q+N LS + + GH N M
Sbjct: 591 GN----LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-----------DNNGSMM 635
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
LD+S N LSG IP+EIG + + LNL +N +SG+IP+ +L+ LDLS N+L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKP 478
IP ++ L L+ ++S NNLSGP P+ QF TF + + N LCG + + S
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755
Query: 479 PA 480
A
Sbjct: 756 YA 757
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 2e-84
Identities = 124/445 (27%), Positives = 191/445 (42%), Gaps = 70/445 (15%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L L +S N G + ++ +L+ LD+S+N S +P L + ++L++LD
Sbjct: 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSF 123
G S +++ ++L++L +S IP
Sbjct: 233 NKLSGDFS-RAISTCTELKLL-------------------------NISSNQFVGPIPPL 266
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
L+ L +L L+ N F G++P + L LD+ N F G +P
Sbjct: 267 PLKS--LQYLSLAEN------------KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT-HLHW 242
G L LS NNFSGELP + L + DLS N F G++ NL+ L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 243 LYLDNNHFSGKMDDANILVQL--SQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQK 299
L L +N+FSG IL L + +L+ + + N +G + + N S + L+L
Sbjct: 373 LDLSSNNFSGP-----ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL-- 425
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359
N G IP + LS L L L N L+G IP EL +K +
Sbjct: 426 ----SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-----------YVKTLET 470
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
L L N+L+GEIP + N+ ++LSNN L+G IP+ L+ L LS+N SG+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 420 PPQLTGLNFLSNFNVSYNNLSGPTP 444
P +L L +++ N +G P
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIP 555
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 2e-71
Identities = 116/453 (25%), Positives = 179/453 (39%), Gaps = 74/453 (16%)
Query: 4 CNLKNLFELDLSSNNFE---GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
C + +DLSS + L +LT L+ L +SN+ ++G V SL L
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105
Query: 61 DRFSINFQGTI-SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
D + G + ++ SL + S L+ L +S SN L
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVS--SNTLD---------------------FPG 142
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV--LQKLIYLDMPKNIF 177
S L+ L LDL S N+ +G + +L +L + N
Sbjct: 143 KVSGGLKLNSLEVLDL------------SANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 178 EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNL 237
GD+ + L D+S NNFS +P + C AL D+S N G
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHL 295
T L L + +N F G + LKSL+ + + EN +G + ++ L
Sbjct: 247 TELKLLNISSNQFVGPIPPLP-------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
L N F+G +P S L L L N+ G +P + ++
Sbjct: 300 DL------SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD----------TLLKMR 343
Query: 356 YMAGLDLSSNELSGEIPREIGQL-QNIRALNLSNNFLSGAIPESFSNLKMT--ESLDLSH 412
+ LDLS NE SGE+P + L ++ L+LS+N SG I + + L L +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 413 NRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
N +G IPP L+ + L + ++S+N LSG P
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 379 QNIRALNLSNNFLS---GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435
+ +++LS+ L+ A+ S +L ESL LS++ ++G + L++ ++S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108
Query: 436 YNNLSGPTPDKEQFA 450
N+LSGP
Sbjct: 109 RNSLSGPVTTLTSLG 123
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 5e-66
Identities = 88/296 (29%), Positives = 132/296 (44%), Gaps = 28/296 (9%)
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP-IVSGCVALDLFDLSN-NNFFGQIFP 232
+ G + + + + DLS N P P ++ L+ + NN G I P
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 233 KYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS 291
LT LH+LY+ + + SG I LSQ+K+L +D N+LSG+L S +L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLL-LRGNSLQGHIPNELCHVSRFLHRF 350
+ + N+ G IP S L + + N L G IP +++
Sbjct: 151 LVGITF------DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------ 198
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
+A +DLS N L G+ G +N + ++L+ N L+ + K LDL
Sbjct: 199 ------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGS 466
+NR+ G +P LT L FL + NVS+NNL G P FD S+Y N LCGS
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 4e-40
Identities = 63/299 (21%), Positives = 102/299 (34%), Gaps = 70/299 (23%)
Query: 3 ICNLKNLFELDLSS-NNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ NL L L + NN G IP + LT L L I++ +SG +P L+ + +L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
S N+L SG+ +P
Sbjct: 132 ---------FSYNAL------------SGT----------------------------LP 142
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
+ +L+ + N +G +P + G + + + +N G I
Sbjct: 143 PSISSLPNLVGITFD------------GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
P + + L DLSRN G+ L+ N+ + K +L+
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLN 247
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
L L NN G + L+QLK L +++ N+L G + NL N
Sbjct: 248 GLDLRNNRIYGT-----LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCHVSRFLHRFYSNLKYMAGLDL 362
+ + G + + ++ L L G +L IP+ L NL Y+ L +
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-----------NLPYLNFLYI 83
Query: 363 SS-NELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421
N L G IP I +L + L +++ +SGAIP+ S +K +LD S+N LSG +PP
Sbjct: 84 GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 422 QLTGLNFLSNFNVSYNNLSGPTPD 445
++ L L N +SG PD
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPD 167
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSG--AIPESFSNLKMTESLDLSH-NRL 415
D + G + Q + L+LS L IP S +NL L + N L
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 416 SGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
G IPP + L L +++ N+SG PD
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 4e-55
Identities = 102/469 (21%), Positives = 170/469 (36%), Gaps = 45/469 (9%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L LD+ N P+ L LKVL++ +N+LS T T+L L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH-LM 105
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPS- 122
N I N L L +S N L K T L+ L LS+ + + S
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLS--HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 123 --FLLQHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQ--K 166
+ + L L+LS+N++ P C +N L + + L
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQ--DLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
+ L + + + +K + DLS NN + + + L+ F L N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYN 282
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANI----LVQLSQLKSLELIDIFENSLS 280
N L ++ +L L + + A++ LK LE +++ +N +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 281 GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
G + F L ++K+L L + + + S LH+L L N + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRT--LTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP-REIGQLQNIRALNLSNNFLSGAIPES 398
S L ++ LDL NE+ E+ +E L+NI + LS N S
Sbjct: 401 F-----------SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 399 FSNLKMTESLDLSHNRLSG--HIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
F+ + + L L L P L L+ ++S NN++ D
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 7e-54
Identities = 85/480 (17%), Positives = 154/480 (32%), Gaps = 63/480 (13%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNL--THLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
++ L LS++ L T+L +LD+S N L+ + L LEY
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 62 RFSINFQGTISINSLANHSKLEVL--------LISSGSNMLQVKTETWHPTSQLKVLKLS 113
N + +SL + L S +++ ++ ++ L+ L +
Sbjct: 279 -LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337
Query: 114 DCHLHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
D + I S + +L +L LSN+ + +N F + L L++
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFT--SLRTLTNETFVS-------LAHSPLHILNL 388
Query: 173 PKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFP 232
KN + + L + DL N EL G + LS N +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448
Query: 233 KYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS 291
+ + L L L + L L L D+ N+++ L
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL---DLSNNNIANINDDMLEGLEK 505
Query: 292 VKHLYLQKNAIT--GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349
++ L LQ N + + G Y + LS+LH+L
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL------------------------ 541
Query: 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLD 409
+L SN L ++ ++L N L+ F+N +SL+
Sbjct: 542 -----------NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 410 LSHNRLSGHIPPQL-TGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468
L N ++ L+ ++ +N F + ++T EL +
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 7e-50
Identities = 94/474 (19%), Positives = 162/474 (34%), Gaps = 89/474 (18%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLT---NLTSL 57
L I +L +L+LSSN + P C + + L L ++N QL + L TS+
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 58 EYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117
L S + T S + + L +L LS +L
Sbjct: 225 RNLS-LSNSQLSTTSNTTFLG-----------------------LKWTNLTMLDLSYNNL 260
Query: 118 HVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176
+V+ + L + L N + F ++ G L + YL++ ++
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFS----HSLHG---------LFNVRYLNLKRSF 307
Query: 177 FEGDI---------PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF 227
+ I +S +K L ++ N+ G + + +G + L LSN+
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTS 366
Query: 228 GQIFP----KYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
+ + + LH L L N S DA S L LE++D+ N + L
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-----FSWLGHLEVLDLGLNEIGQEL 421
Query: 284 VSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNE 339
L ++ +YL N + +L L+LR +L+ P+
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQL------TRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS------- 392
+ NL LDLS+N ++ + L+ + L+L +N L+
Sbjct: 476 FQPL--------RNLTI---LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 393 -GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
G L L+L N L L ++ NNL+
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 9e-49
Identities = 94/455 (20%), Positives = 155/455 (34%), Gaps = 45/455 (9%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65
N+ L+L+ N + L LD+ N +S P L L+ L+
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+S + A + L L + SN +Q +K + L L LS L
Sbjct: 84 ELSQ-LSDKTFAFCTNLTELHLM--SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 125 LQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
+L L LSNNK+ + S L L++ N + P
Sbjct: 141 QVQLENLQELLLSNNKIQA---LKSEELDIFANS--------SLKKLELSSNQIKEFSPG 189
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDL--FDLSNNNFFGQIFP--KYMNLTH 239
+ L+ L+ L + + + LSN+ + T+
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249
Query: 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQ 298
L L L N+ + +D+ + L LE + N++ S L +V++L L+
Sbjct: 250 LTMLDLSYNNLNVVGNDS-----FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 299 KNAITGD---NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
++ + L L L + N + G N + NLK
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--------INLK 356
Query: 356 YMAGLDLSSNELS-GEIPREIGQ---LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
Y L LS++ S + E + LNL+ N +S ++FS L E LDL
Sbjct: 357 Y---LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 412 HNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPD 445
N + + Q GL + +SYN T +
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 1e-45
Identities = 88/452 (19%), Positives = 170/452 (37%), Gaps = 43/452 (9%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
+ D S +P L T++ VL++++NQL + T + L LD N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD-VGFNT 60
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH 127
+ L+VL + + + Q+ +T+ + L L L + I +
Sbjct: 61 ISKLEPELCQKLPMLKVLNL-QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 128 -YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
+LI LDLS+N + + L+ L L + N + +
Sbjct: 120 QKNLITLDLSHNGLSS-------------TKLGTQVQLENLQELLLSNNKIQALKSEELD 166
Query: 187 EMKELYMQ--DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI---FPKYMNLTHLH 241
++ +LS N P L L+N + + T +
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN 300
L L N+ S + + ++ + L L D+ N+L+ SF L +++ +L+ N
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP-NELCHVSRFLHRFYSNLKYMAG 359
I + ++ L N+ L L+ + + I L + F ++ L++
Sbjct: 283 NIQ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH--- 333
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA--IPESFSNLKMT--ESLDLSHNRL 415
L++ N++ G L N++ L+LSN+F S E+F +L + L+L+ N++
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Query: 416 SGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKE 447
S + L L ++ N + +E
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 2e-37
Identities = 71/343 (20%), Positives = 121/343 (35%), Gaps = 40/343 (11%)
Query: 104 TSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163
T +V S L +P L ++ L+L++N NF
Sbjct: 3 TVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHN----QLRRLPAANFTR--------- 47
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+L LD+ N P ++ L + +L N S L + C L L +
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMS 106
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG-- 281
N+ ++ +L L L +N S QL++L+ + + N +
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-----QVQLENLQELLLSNNKIQALK 161
Query: 282 -SLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340
+ F SS+K L L N I P + + L L L L + +L
Sbjct: 162 SEELDIFANSSLKKLELSSNQIK------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Query: 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQ--NIRALNLSNNFLSGAIPES 398
C ++++ L LS+++LS L+ N+ L+LS N L+ +S
Sbjct: 216 CLELAN-----TSIRN---LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 399 FSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441
F+ L E L +N + L GL + N+ +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-28
Identities = 61/303 (20%), Positives = 110/303 (36%), Gaps = 26/303 (8%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVP-STLTNLTSLEYLDR 62
L L+L+ N + L HL+VLD+ N++ ++ L ++ +
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY- 436
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQ---VKTETWHPTSQLKVLKLSDCHL-H 118
S N ++ NS A L+ L++ L+ + P L +L LS+ ++ +
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
+ L L LDL +N N + G + L L L++ N F+
Sbjct: 495 INDDMLEGLEKLEILDLQHN----NLARLWKHANPGGPIYFLKG-LSHLHILNLESNGFD 549
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG---QIFPKYM 235
++ EL + DL NN + LP + + V+L +L N ++F
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGP-- 606
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-------SLSGSLVSSFN 288
+L L + N F + V + ++ + G V F+
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFD 666
Query: 289 LSS 291
SS
Sbjct: 667 TSS 669
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 5e-55
Identities = 64/482 (13%), Positives = 147/482 (30%), Gaps = 66/482 (13%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ +L + ++S+ + I + + +N ++ V + LT L
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDC-HLHV 119
+ F I + E + W L +++ +C +L
Sbjct: 212 YMGNSPFVAEN-ICEAWENENSEYAQQYKTED------LKWDNLKDLTDVEVYNCPNLTK 264
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN-IFE 178
+P+FL + ++++ N+ + + + P +K+ + + N +
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV-----GEKIQIIYIGYNNLKT 319
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSG----------------------ELPQPIVSGCVAL 216
+ S+ +MK+L M + N G E+P +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379
Query: 217 DLFDLSNNNFFGQIFPKYM---NLTHLHWLYLDNNHFSGKMDDA--NILVQLSQLKSLEL 271
+ ++N + P +++ + + N + + ++
Sbjct: 380 ENLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 272 IDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG-DNKFFGRIPYQINELSNLHVLLLRG 329
I++ N +S F S + + L N +T L + LR
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 330 NSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSN- 388
N L + ++ + L Y+ G+DLS N S P + ++ + N
Sbjct: 498 NKLTK-LSDDF---------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546
Query: 389 -----NFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443
N PE + L + N + + ++ +S ++ N
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISID 603
Query: 444 PD 445
Sbjct: 604 LS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 7e-55
Identities = 74/465 (15%), Positives = 150/465 (32%), Gaps = 69/465 (14%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG----KVPSTLTNLTSLEYL 60
+ + L L G +P + LT L+VL + ++ P ++ S E
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 61 DRFSINFQGTI-SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
+ +++Q T + + S L I+S +K + T + + ++
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITF 197
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+ +++ L + N+ V + +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI------------------CEAWENENSEYAQQYK 239
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF--------FGQIF 231
+K+L ++ +LP + + L +++ N Q
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSS 291
+ +Y+ N+ + L ++K L +++ N L G L + +
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKT----FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354
Query: 292 VKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF 350
+ L L N IT IP + L N L+ IPN
Sbjct: 355 LASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-------- 398
Query: 351 YSNLKYMAGLDLSSNELSG-------EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
++ M+ +D S NE+ + + N+ ++NLSNN +S E FS
Sbjct: 399 -KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 404 MTESLDLSHNRLSG-------HIPPQLTGLNFLSNFNVSYNNLSG 441
S++L N L+ L++ ++ +N L+
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 6e-49
Identities = 56/470 (11%), Positives = 136/470 (28%), Gaps = 74/470 (15%)
Query: 3 ICNLKNLFELDLSSNNFEG----HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLE 58
I L L L L S+ + P+ ++ + +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH 118
+ + + + + + + SS + + ++
Sbjct: 161 ------------LIKDCINSDPQQKSIKKSSRIT------------LKDTQIGQLSNNIT 196
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV------LQKLIYLDM 172
+ +++ L + N+ V + N + + L+ L +++
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256
Query: 173 PKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG--------CVALDLFDLSNN 224
+P + + E+ + +++ N Q + + + N
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 225 NFF-GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
N + + L L N GK+ L +++ N ++
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA------FGSEIKLASLNLAYNQITEIP 369
Query: 284 VSSF-NLSSVKHLYLQKNAITGDNKFFGRIP--YQINELSNLHVLLLRGNSLQGHIPNEL 340
+ V++L N + IP + +S + + N +
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSG------- 393
+ ++ ++LS+N++S + ++NL N L+
Sbjct: 423 DPLDPTP----FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Query: 394 AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF--LSNFNVSYNNLSG 441
E+F N + S+DL N+L+ + L ++SYN+ S
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-41
Identities = 68/437 (15%), Positives = 144/437 (32%), Gaps = 80/437 (18%)
Query: 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86
LN+ + L + SG+VP + LT LE L S + + S
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPI 146
+H +F+ F DL + +
Sbjct: 137 QKQKMR------------------------MHYQKTFVDYDPREDFSDLIKDCI------ 166
Query: 147 CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
+++ + ++ I L K + N + ++ + +L + + F E
Sbjct: 167 -NSDPQQKSIKKSSRITL-KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223
Query: 207 QPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
C A + + + K+ NL L + + N K+ L L
Sbjct: 224 ------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-----LKAL 272
Query: 267 KSLELIDIFENSLSG---------SLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317
++LI++ N +L + ++ +Y+ N + + +
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQ 327
Query: 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQ 377
++ L +L N L+G +P + +A L+L+ N+++ G
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFG-----------SEIKLASLNLAYNQITEIPANFCGF 375
Query: 378 LQNIRALNLSNNFLSGAIPESFS--NLKMTESLDLSHNRLSG-------HIPPQLTGLNF 428
+ + L+ ++N L IP F ++ + ++D S+N + + P
Sbjct: 376 TEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434
Query: 429 LSNFNVSYNNLSGPTPD 445
+S+ N+S N +S +
Sbjct: 435 VSSINLSNNQISKFPKE 451
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-39
Identities = 57/400 (14%), Positives = 119/400 (29%), Gaps = 58/400 (14%)
Query: 2 GICNLKNLFELDLSSNNF--------EGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLT 52
+ L + ++++ N + ++++ I N L + V ++L
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327
Query: 53 NLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLK 111
+ L L+ +G + + + KL L ++ N + + T Q++ L
Sbjct: 328 KMKKLGMLECLYNQLEG--KLPAFGSEIKLASLNLAY--NQITEIPANFCGFTEQVENLS 383
Query: 112 LSDCHLHVIPS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIY 169
+ L IP+ + +D S N++ + L +
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-----DGKNFDPLDPTPFK-GINVSS 437
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
+++ N L +L N + +P N
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IP-----------------KNSLKD 479
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289
+ N L + L N + DD + + L L ID+ NS S N
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDD----FRATTLPYLVGIDLSYNSFSKFPTQPLNS 535
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349
S++K ++ N+ P I +L L + N ++ + ++
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT-------- 586
Query: 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN 389
N+ LD+ N + L +
Sbjct: 587 --PNISV---LDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 30/241 (12%), Positives = 61/241 (25%), Gaps = 21/241 (8%)
Query: 220 DLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
L G++ LT L L L ++ + +S S E
Sbjct: 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKGISANMSDEQKQKMRMHY 145
Query: 280 SGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
+ V L K+ I + I + N++ +
Sbjct: 146 QKTFVDY--DPREDFSDLIKDCINS-DPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399
+ L + + ++ E E + N +
Sbjct: 202 VM-----------RLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKW 245
Query: 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTG 459
NLK +++ + +P L L + NV+ N K+ + ++
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305
Query: 460 N 460
Sbjct: 306 K 306
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 32/255 (12%), Positives = 60/255 (23%), Gaps = 67/255 (26%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-------KVPSTLTNL 54
N+ ++LS+N + + + L +++ N L+ N
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487
Query: 55 TSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSD 114
L +D + N KL L + L L + LS
Sbjct: 488 YLLTSID---------LRFN------KLTKLSDDFRATTLP----------YLVGIDLSY 522
Query: 115 CHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK 174
P+ L L + N D
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQ-------------------------------RDAQG 551
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N + P I L + N+ ++ + I + + D+ +N
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDIKDNPNISIDLSYV 607
Query: 235 MNLTHLHWLYLDNNH 249
L +
Sbjct: 608 CPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 17/133 (12%)
Query: 315 QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG----E 370
+N + L L G G +P+ + L + L L S+
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIG-----------QLTELEVLALGSHGEKVNERLF 124
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT--ESLDLSHNRLSGHIPPQLTGLNF 428
P+ I + + + ++ + I
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 429 LSNFNVSYNNLSG 441
+ NN++
Sbjct: 185 DTQIGQLSNNITF 197
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 374 EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG----HIPPQLTGLNFL 429
+ + L+L SG +P++ L E L L + P ++
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 430 SNFNVSYNNLSGPTPDKEQFATF 452
+ D + F
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDF 158
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 3e-50
Identities = 94/467 (20%), Positives = 155/467 (33%), Gaps = 49/467 (10%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
L NL LDL+ + L L ++ N L + L+ +L++L
Sbjct: 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF- 111
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIP 121
F +I L N LE L + SN + +K PT +LKVL + +H +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLG--SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 122 SFL---LQHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQK 166
LQ + L+L+ N + G P N +Q
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229
Query: 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQ--DLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
L E P + E+ ++ +L ++ F + L DL+
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT 288
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
+ ++ + L+ L L L N F + S SL + I N+ L
Sbjct: 289 H-LSELPSGLVGLSTLKKLVLSANKFENLCQIS-----ASNFPSLTHLSIKGNTKRLELG 342
Query: 285 SSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342
+ NL +++ L L + I Q+ LS+L L L N
Sbjct: 343 TGCLENLENLRELDLSHDDIE----TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSN 401
L+ LDL+ L + + L ++ LNLS++ L + + F
Sbjct: 399 C--------PQLEL---LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 402 LKMTESLDLSHNRLSGHI---PPQLTGLNFLSNFNVSYNNLSGPTPD 445
L + L+L N L L L +S+ +LS
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-48
Identities = 91/459 (19%), Positives = 151/459 (32%), Gaps = 42/459 (9%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD- 61
+ N K L L L SN+ LKVLD NN + +++L L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+ N I + + + + + ++ K L + D I
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 122 SFL---LQHYHLIFLDLSNNKVVGNFPIC------------SNNNFAGKLPRNMGIVLQK 166
+ L + ++L + + + + +LP + L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLST 302
Query: 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
L L + N FE S L + N EL + L DLS+++
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 227 FGQIFPKYM--NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
NL+HL L L N +A + LEL+D+ L
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-----FKECPQLELLDLAFTRLKVKDA 417
Query: 285 SSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342
S NL +K L L + + + + L L L L+GN +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISS------EQLFDGLPALQHLNLQGNHFPKGNIQKT-- 469
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402
L + L LS +LS L+ + ++LS+N L+ + E+ S+L
Sbjct: 470 ------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441
K L+L+ N +S +P L L+ N+ N L
Sbjct: 524 K-GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 4e-38
Identities = 76/445 (17%), Positives = 127/445 (28%), Gaps = 87/445 (19%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65
+ L+ S N + L +L LD++ Q+ T + L+ L
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV---- 87
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLL 125
++ N L + + LK L + I L
Sbjct: 88 -----LTANPL-----------------IFMAETALSGPKALKHLFFIQTGISSIDFIPL 125
Query: 126 QH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
+ L L L +N + + G +KL L
Sbjct: 126 HNQKTLESLYLGSNHISS-------------IKLPKGFPTEKLKVL-------------- 158
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLS-NNNFFGQIFPKYMNLTHLHWL 243
D N L + +S L+ N N I P + L
Sbjct: 159 ----------DFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303
+ + L D+ + +S ++ SV+ + LQK+
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 304 GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363
+ S L L L L +P+ L + S LK L LS
Sbjct: 268 NI------SSNTFHCFSGLQELDLTATHLS-ELPSGLVGL--------STLKK---LVLS 309
Query: 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRL--SGHIP 420
+N+ ++ L++ N + NL+ LDLSH+ + S
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 421 PQLTGLNFLSNFNVSYNNLSGPTPD 445
QL L+ L + N+SYN +
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTE 394
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 71/383 (18%), Positives = 117/383 (30%), Gaps = 90/383 (23%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPS-TLTNLTSLEYL 60
G+ L L +L LS+N FE +N L L I N ++ + L NL +L L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
D +S + + S L+ L LS +
Sbjct: 356 D---------LSHDDI---------------ETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 121 PSFLLQHY-HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+ + L LDL+ ++ + + F L L L++ ++ +
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKV---KDAQSPFQN---------LHLLKVLNLSHSLLDI 439
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH 239
+ L +L N+F ++ N L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPK---------------GNIQKTNSLQ-------TLGR 477
Query: 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQK 299
L L L S A + LK + +D+ N L+ S + + + +L L
Sbjct: 478 LEILVLSFCDLSSIDQHA-----FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSN------ 353
N I+ +P + LS + LR N L C FL + N
Sbjct: 533 NHIS------IILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLED 581
Query: 354 --------LKYMAGLDLSSNELS 368
+ G+ LS LS
Sbjct: 582 TEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 32/256 (12%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKM 254
+ + E+P + + L+ S N + L +L +L L
Sbjct: 18 NCENLGLN-EIPGTLPNSTECLEF---SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 255 DDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313
+D L+ + + N L ++ ++KHL+ + I+
Sbjct: 74 EDT-----FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI------DF 122
Query: 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPR 373
++ L L L N + + + + LD +N +
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKG-----------FPTEKLKVLDFQNNAIHYLSKE 171
Query: 374 EIGQLQNIR--ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF--L 429
++ LQ +LNL+ N ++G I + + +SL+ + I L L
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230
Query: 430 SNFNVSYNNLSGPTPD 445
+ +P
Sbjct: 231 WLGTFEDMDDEDISPA 246
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 26/219 (11%)
Query: 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHL 295
L N + S+L +L +D+ + +F + + L
Sbjct: 32 PNSTECLEFSFNVLPTIQNTT-----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
L N + ++ L L + L + L+
Sbjct: 87 VLTANPLIFM------AETALSGPKALKHLFFIQTGISSIDFIPLHNQK--------TLE 132
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTE--SLDLSHN 413
L L SN +S + + ++ L+ NN + E S+L+ SL+L+ N
Sbjct: 133 S---LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452
++ I P + N + +T
Sbjct: 190 DIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 20/205 (9%)
Query: 266 LKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324
S E ++ N L ++F L ++ L L + I L
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDT 85
Query: 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRAL 384
L+L N L L LK+ L +S + + + +L
Sbjct: 86 LVLTANPLIFMAETALSG--------PKALKH---LFFIQTGISSIDFIPLHNQKTLESL 134
Query: 385 NLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSN--FNVSYNNLSGP 442
L +N +S + + LD +N + ++ L +N N++ N+++G
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194
Query: 443 TPDKEQFATFDESSYTGNHELCGSL 467
P A F ++ G L
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIF 219
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-49
Identities = 86/457 (18%), Positives = 152/457 (33%), Gaps = 62/457 (13%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKV----LDISNNQLSGKVPSTLTNLTSLE 58
NL NL LDLSSN + L L + + LD+S N ++ P + L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTS-----QLKVLKLS 113
L + + + + LEV + G + E + ++ L + +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 114 DCHLHV----IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIY 169
+L I ++ L + + N +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG---------------WQH 308
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN--NFF 227
L++ F + +K L N E +L+ DLS N +F
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRNGLSFK 362
Query: 228 GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF 287
G T L +L L N + L+ LE +D ++L S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 288 --NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345
+L ++ +L + N LS+L VL + GNS Q + +
Sbjct: 417 FLSLRNLIYLDIS------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------ 464
Query: 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405
++ L+ + LDLS +L P L +++ LN+S+N + L
Sbjct: 465 ----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 406 ESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSG 441
+ LD S N + +L + L+ N++ N+ +
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-49
Identities = 83/471 (17%), Positives = 160/471 (33%), Gaps = 58/471 (12%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ L LDLS + +L+HL L ++ N + + L+SL+ L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVI 120
N + + + L+ L ++ N++Q E + + L+ L LS + I
Sbjct: 108 VETNLASLEN-FPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 121 PSFLLQ-----HYHLIFLDLSNNKVVGNFPIC-----------SNNNFAGKLPRNMGIVL 164
L+ + LDLS N + P NN + + + L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 165 QKLIYLDMPKNIFEGD------IPYSIGEMKELYMQ--DLSRNNFSGELPQPIVSGCVAL 216
L + F + ++ + L ++ L+ ++ + + + +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 217 DLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE 276
F L + + L L N F +LKSL+ +
Sbjct: 285 SSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ--------FPTLKLKSLKRLTFTS 334
Query: 277 NSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 336
N + S +L S++ L L +N ++ F G ++L L L N + +
Sbjct: 335 NKGGNAF-SEVDLPSLEFLDLSRNGLS----FKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388
Query: 337 PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAI 395
+ + L++ LD + L + L+N+ L++S+ A
Sbjct: 389 SSNFLGL--------EQLEH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 396 PESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPD 445
F+ L E L ++ N + P T L L+ ++S L +P
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 9e-49
Identities = 91/452 (20%), Positives = 158/452 (34%), Gaps = 44/452 (9%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYLD 61
L +L +L N + +L LK L++++N + S K+P +NLT+LE+LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 62 RFSINFQGTISINSLANHSKLEVLLISS--GSNMLQVKTETWHPTSQLKVLKLSDCHL-- 117
S N +I L ++ +L +S N + +L L L +
Sbjct: 156 -LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIF 177
+V+ + + L L + + + A + N+ I +L YLD +
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD----YY 270
Query: 178 EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNL 237
DI + + L S +L N F K +L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV---SSFNLSSVKH 294
L + + ++D L SLE +D+ N LS S F +S+K+
Sbjct: 328 KRLTFTSNKGGNAFSEVD----------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L L N + + L L L + ++L+ + +L
Sbjct: 378 LDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSEFS----------VFLSL 420
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHN 413
+ + LD+S L ++ L ++ N P+ F+ L+ LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
+L P L+ L N+S+NN
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 4e-41
Identities = 90/458 (19%), Positives = 151/458 (32%), Gaps = 37/458 (8%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + N+ NF IP L K LD+S N L + + L+ LD
Sbjct: 4 VEVVPNI-TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETW-HPTSQLKVLKLSDCHLHVIP 121
Q + + S L L+++ N +Q S L+ L + +L +
Sbjct: 60 SRCEIQTIED-GAYQSLSHLSTLILT--GNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 122 SFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
+F + H L L++++N + KLP L L +LD+ N +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQS-----------FKLPEYFS-NLTNLEHLDLSSNKIQSI 164
Query: 181 IPYSIGEMKELYMQ----DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YM 235
+ + ++ + DLS N + P + L L NN +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 236 NLTHLHWLYLDNNHFSG----KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLS 290
L L L F + D + L L L E + + ++ F L+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 291 SVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF 350
+V L I F +Q EL N L+
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 351 YSNLKYMAGLDLSSNELS--GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
+L + LDLS N LS G + +++ L+LS N + + +F L+ E L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401
Query: 409 DLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPD 445
D H+ L L L ++S+ +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 7e-39
Identities = 81/450 (18%), Positives = 151/450 (33%), Gaps = 63/450 (14%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQ-CLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEY 59
G L +L L +N ++ + C+ L L+V + + + + ++LE
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
L + I LA +I + + + + L +
Sbjct: 254 LCNLT------IEEFRLAYLDYYLDDIIDLFNCL-----------TNVSSFSLVSVTIER 296
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+ F ++ L+L N K G+ P L++L + +G
Sbjct: 297 VKDF-SYNFGWQHLELVNCKF-------------GQFPTLKLKSLKRLTFTS-----NKG 337
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIV-SGCVALDLFDLSNNNFFGQIFPKYMNLT 238
+S ++ L DLSRN S + G +L DLS N + ++ L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLE 396
Query: 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYL 297
L L +++ M + ++ + L L L DI + F LSS++ L +
Sbjct: 397 QLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 298 QKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYM 357
N+ +P EL NL L L L+ P ++L +
Sbjct: 453 AGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-----------NSLSSL 496
Query: 358 AGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT-ESLDLSHNRLS 416
L++S N L +++ L+ S N + + + + + L+L+ N +
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 417 GHIPPQ--LTGLNFLSNFNVSYNNLSGPTP 444
Q L + V + TP
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-30
Identities = 70/414 (16%), Positives = 137/414 (33%), Gaps = 70/414 (16%)
Query: 2 GICNLKNLFELDLSSNN-FEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
G+CNL + E L+ + + I N LT++ + + + + ++L
Sbjct: 253 GLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHL 309
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
+ G L + LK L +
Sbjct: 310 E-LVNCKFGQFPTLKLKS----------------------------LKRLTFTSNKGGNA 340
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
S + L FLDLS N +F G ++ L YLD+ N
Sbjct: 341 FSEVDLP-SLEFLDLSRNG----------LSFKGCCSQSDF-GTTSLKYLDLSFNGVIT- 387
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
+ + +++L D +N + L D+S+ + + L+ L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQK 299
L + N F ++L++L +D+ + L ++F +LSS++ L +
Sbjct: 448 EVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359
N + L++L VL N + EL H L
Sbjct: 504 NNFFSL------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---------- 547
Query: 360 LDLSSNELSGEIPRE--IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
L+L+ N+ + + + +++ R L + + A P + + SL+++
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL-SLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 66/301 (21%), Positives = 114/301 (37%), Gaps = 30/301 (9%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS--GKVPSTLTNLTSLE 58
LK+L L +SN G +L L+ LD+S N LS G + TSL+
Sbjct: 319 FPTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQ--VKTETWHPTSQLKVLKLSDCH 116
YLD S N T+S ++ +LE L + L+ + + L L +S H
Sbjct: 377 YLD-LSFNGVITMS-SNFLGLEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 117 LHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN 175
V + + L L + + N+F ++ L+ L +LD+ +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKM------------AGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 176 IFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235
E P + + L + ++S NNF P +L + D S N+ +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 236 NL-THLHWLYLDNNHFSGKMDDANILVQLSQLKSL-----ELIDIFENSLSGSLVSSFNL 289
+ + L +L L N F+ + + L + + L + + G V S N+
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599
Query: 290 S 290
+
Sbjct: 600 T 600
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 1e-47
Identities = 66/466 (14%), Positives = 142/466 (30%), Gaps = 69/466 (14%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD- 61
+ N + L L+ +G +P + LT LKVL + + + + +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 62 ----RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117
+ + + N S L I+ M +K ++ ++ L++ +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RI 437
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIF 177
I + + L + +N+ + + +
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYD------------------NIAVDWEDANSDYAKQ 479
Query: 178 EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF---------FG 228
+ S +K+L +L +LP + L +++ N +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWT 538
Query: 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN 288
++ + Y+ N+ A++ ++ L L+D N + L +
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASL----QKMVKLGLLDCVHNKVR-HLEAFGT 593
Query: 289 LSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
+ L L N I IP + L N L+ IPN
Sbjct: 594 NVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLKY-IPNIF------- 638
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPR-----EIGQLQNIRALNLSNNFLSGAIPESFSNL 402
++ M +D S N++ E + + N + LS N + E F+
Sbjct: 639 --NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696
Query: 403 KMTESLDLSHNRLS-------GHIPPQLTGLNFLSNFNVSYNNLSG 441
++ LS+N ++ L+ ++ +N L+
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-47
Identities = 62/497 (12%), Positives = 135/497 (27%), Gaps = 106/497 (21%)
Query: 3 ICNLKNLFELDLSSNNFEG-------------------HIPQCLNNLTHLKVLDISNNQL 43
I L L + +++ F + +NL L +++ N
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 44 SGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHP 103
++P L +L L+ L+ I+ N
Sbjct: 504 MTQLPDFLYDLPELQSLN---------IACN----------------------------- 525
Query: 104 TSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163
+ + + + N + P + +
Sbjct: 526 --RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-------------FPASASLQ 570
Query: 164 -LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLS 222
+ KL LD N + + G +L L N E+P+ + ++ S
Sbjct: 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627
Query: 223 NNNFFGQIFPKYM---NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
+N + P ++ + + N + + + + + + + + N +
Sbjct: 628 HNKL--KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Query: 280 SGSLVSSF-NLSSVKHLYLQKNAITG-DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337
F S + + L N +T L + LR N L +
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS 744
Query: 338 NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNL------SNNFL 391
++ + L Y++ +D+S N S P + ++A + N +
Sbjct: 745 DDF---------RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 392 SGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL-SGPTPD--KEQ 448
P + L + N + + +L L +++ N S
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYI 851
Query: 449 FATFDESSYTGNHELCG 465
A Y ++ G
Sbjct: 852 EAGMYVLLYDKTQDIRG 868
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (418), Expect = 1e-43
Identities = 57/443 (12%), Positives = 128/443 (28%), Gaps = 48/443 (10%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ + + L+N + L ++ G+VP + LT L+ L + + +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
+ ++ + K +L + L ++ P +
Sbjct: 363 GRLFGD-EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKD 420
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
+ L + ++ N + + + L KL + + F D +
Sbjct: 421 SRISLKDTQIGN------LTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNI-----AVD 468
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHF 250
+ S L +L N Q+ +L L L + N
Sbjct: 469 WEDANSDYAKQYENEELSW-SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 251 SGKMDDANILVQL----SQLKSLELIDIFENSLSGSLVSS--FNLSSVKHLYLQKNAITG 304
+L +++ + N+L S+ + + L N +
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364
+ L L L N ++ IP + C + + L S
Sbjct: 588 -------LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG----------LGFSH 628
Query: 365 NELSGEIPR--EIGQLQNIRALNLSNNFLSGAIPESFSNLKMT-----ESLDLSHNRLSG 417
N+L IP + + +++ S N + ++ ++ LS+N +
Sbjct: 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Query: 418 HIPPQLTGLNFLSNFNVSYNNLS 440
+ +S +S N ++
Sbjct: 688 FPTELFATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 5e-28
Identities = 56/395 (14%), Positives = 97/395 (24%), Gaps = 100/395 (25%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ + L LD N H+ L L + NQ+ +E L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
S L I
Sbjct: 625 G--------------------------------------------------FSHNKLKYI 634
Query: 121 PS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
P+ Y + +D S NK+ S + K + + N +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN--------ASTVTLSYNEIQ 686
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT 238
+ LS N + +P N Y N
Sbjct: 687 KFPTELFATGSPISTIILSNNLMT-SIP-----------------ENSLKPKDGNYKNTY 728
Query: 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQ 298
L + L N + DD + + L L +D+ N S N S +K ++
Sbjct: 729 LLTTIDLRFNKLTSLSDD----FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784
Query: 299 KNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMA 358
N+ + P I +L L + N ++ + +L L
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT----------PQLYI-- 831
Query: 359 GLDLSSNEL-SGEIPREIGQLQNIRALNLSNNFLS 392
LD++ N S ++ ++ L +
Sbjct: 832 -LDIADNPNISIDVTSVCPYIEA-GMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 8e-10
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
L L+ G +P IGQL ++ L+ + + + + + +R+ H
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 420 PP----QLTGLNFLSNFNVSYNNLSGPTP 444
LN + N P
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKP 416
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 9/111 (8%), Positives = 30/111 (27%), Gaps = 7/111 (6%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
+ + + ++ + L+L+ G +P++ L + L + +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 420 P-------PQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHEL 463
+ Y + + + + + N E+
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 3e-43
Identities = 83/472 (17%), Positives = 140/472 (29%), Gaps = 61/472 (12%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
L +L L L+ N + P + LT L+ L +L+ + L +L+ L+
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETW-----HPTSQLKVLKLSDCHL 117
+N + L + +S N +Q T L +S +
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLS--YNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG----KLPRNMGIVLQKL------ 167
I Q L L L N N N AG +L + L
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 168 ----------IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALD 217
+ D + + L+ + V
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL---EDVPKHFKWQ 310
Query: 218 LFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN 277
+ ++L L L L N S I + L SL +D+ N
Sbjct: 311 SLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGS-------ISFKKVALPSLSYLDLSRN 360
Query: 278 SLSGSLVSSF---NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG 334
+LS S S+ +S++HL L N + L L L + ++L+
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-------MSANFMGLEELQHLDFQHSTLKR 413
Query: 335 HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA 394
+ +L+ + LD+S + L ++ L ++ N
Sbjct: 414 VTEFS----------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463
Query: 395 IPES-FSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
+ F+N LDLS +L L+ L N+S+NNL
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 5e-42
Identities = 82/483 (16%), Positives = 143/483 (29%), Gaps = 83/483 (17%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYLD 61
L +L L + L LK L++++N + K+P+ +NLT+L ++D
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
S N+ TI++N L + + +S L +S + I
Sbjct: 160 -LSYNYIQTITVNDLQFLRENPQVNLS---------------------LDMSLNPIDFIQ 197
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG----KLPRNMGIVLQKL---------- 167
Q L L L N N N AG +L + L
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 168 ------IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLF-- 219
+ D + + L+ + P +L +
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 220 ----------------DLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263
L+ N G I K + L L +L L N S + +
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375
Query: 264 SQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLH 323
+ L+ L D+ N + L ++HL Q + + + L L
Sbjct: 376 NSLRHL---DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLL 427
Query: 324 VLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIR 382
L + + + ++ +L L ++ N + N+
Sbjct: 428 YLDISYTNTKIDFDGIFLGLT--------SLNT---LKMAGNSFKDNTLSNVFANTTNLT 476
Query: 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442
L+LS L F L + L++SHN L L LS + S+N +
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 443 TPD 445
Sbjct: 537 KGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-38
Identities = 76/470 (16%), Positives = 147/470 (31%), Gaps = 67/470 (14%)
Query: 3 ICNLKNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQ---LSGKVPSTLTNLTSLE 58
I L L +L+++ N +P +NLT+L +D+S N ++ L +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH 118
S+N I + KL L + N + + L V +L
Sbjct: 184 LSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242
Query: 119 VIPSF---------LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIY 169
+ L + L+ + + + L +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-------------LANVSA 289
Query: 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
+ + + + + + + R + L L+ N G
Sbjct: 290 MSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNK--GS 341
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289
I K + L L +L L N S + + + L+ L D+ N + L
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL---DLSFNGAIIMSANFMGL 398
Query: 290 SSVKHLYLQKNAITG-------------------DNKFFGRIPYQINELSNLHVLLLRGN 330
++HL Q + + L++L+ L + GN
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 331 SLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNF 390
S + + + ++N + LDLS +L L ++ LN+S+N
Sbjct: 459 SFKDNTLSN----------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 391 LSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L ++ L +LD S NR+ L+ FN++ N+++
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 81/470 (17%), Positives = 148/470 (31%), Gaps = 62/470 (13%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
I + N+ +P + + K +D+S N L + +N + L++LD
Sbjct: 8 IEVVPNI-TYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLD- 62
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
S TI + L L++ +G+ + ++ + L+ L + L + S
Sbjct: 63 LSRCEIETIEDKAWHGLHHLSNLIL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121
Query: 123 FLLQH-YHLIFLDLSNNK--------VVGNFP-----ICSNNNFAGKLPRNMGIVLQKL- 167
F + L L++++N N S N + N L++
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENP 180
Query: 168 ---IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
+ LDM N + I + +L+ L N S + + + L + L
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 225 NFFGQIFPKY------MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS 278
F + + L + + + DD L+ + ++ + S
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM---SLAGVS 296
Query: 279 LSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338
+ L + L + + + L L L L N
Sbjct: 297 IK-YLEDVPKHFKWQSLSIIRCQLKQFPTLD---------LPFLKSLTLTMNKGSISFKK 346
Query: 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELS--GEIPREIGQLQNIRALNLSNNFLSGAIP 396
+L Y LDLS N LS G ++R L+LS N +
Sbjct: 347 VAL----------PSLSY---LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392
Query: 397 ESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPD 445
+F L+ + LD H+ L L L ++SY N
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-31
Identities = 85/456 (18%), Positives = 154/456 (33%), Gaps = 73/456 (16%)
Query: 21 GHIPQCLNNLTH--------------------LKVLDISNNQLSGKVPSTLTNLTSLEYL 60
G + C+ + + K +D+S N L + +N + L++L
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
D S TI + L L++ +G+ + ++ + L+ L + L +
Sbjct: 62 D-LSRCEIETIEDKAWHGLHHLSNLIL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119
Query: 121 PSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
SF + L L++++N + F+ L L+++D+ N +
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHS---CKLPAYFSN---------LTNLVHVDLSYNYIQT 167
Query: 180 DIPYSIGEMKELYMQ----DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-Y 234
+ ++E D+S N Q + L L N I
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFI--QDQAFQGIKLHELTLRGNFNSSNIMKTCL 225
Query: 235 MNLTHLHWLYLDNNHFSG----KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLS 290
NL LH L F ++ + +I+ L + E + N S +V L+
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 291 SVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRF 350
+V + L +I L + L+ +L
Sbjct: 286 NVSAMSLAGVSIKYLEDVPK--------HFKWQSLSIIRCQLKQFPTLDL---------- 327
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT--ESL 408
LK L L+ N+ S I + L ++ L+LS N LS + S+S+L L
Sbjct: 328 -PFLKS---LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381
Query: 409 DLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
DLS N + GL L + + ++ L T
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 7e-19
Identities = 55/289 (19%), Positives = 88/289 (30%), Gaps = 53/289 (18%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKM 254
DLS N L S L DLS + L HL L L N
Sbjct: 38 DLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 255 DDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313
+ S L SLE + E L+ L ++K L + N I +P
Sbjct: 97 PGS-----FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-----LP 146
Query: 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPR 373
+ L+NL + L N +Q N+L + S LD+S N + I
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS-------LDMSLNPID-FIQD 198
Query: 374 EIGQLQNIRALNLSNNFLSGAIPESF----SNLKM------------------------- 404
+ Q + L L NF S I ++ + L +
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Query: 405 ----TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQF 449
+ L++ + L +S +++ ++ + F
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 20/230 (8%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNL--THLKVLDISNNQLSGKVPSTLTNLTSLE 58
L +L LDLS N ++L L+ LD+S N + + L L+
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402
Query: 59 YLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL- 117
+LD + ++ + KL L I S +N + + L LK++
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDI-SYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 118 -HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176
+ + + +L FLDLS ++ + + L +L L+M N
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQ-------------ISWGVFDTLHRLQLLNMSHNN 508
Query: 177 FEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
++ L D S N + +L F+L+NN+
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSV 557
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-35
Identities = 94/460 (20%), Positives = 163/460 (35%), Gaps = 37/460 (8%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKV--PSTLTNLTSLEYLDR 62
NL NL LDL S+ P L HL L + LS V NL +L LD
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD- 129
Query: 63 FSINFQGTISIN-SLANHSKLEVLLISSGSNMLQVKTETWHP--TSQLKVLKLSDCHLHV 119
S N ++ ++ S + L+ + S + + V P L L+ L+
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDF-SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188
Query: 120 IPSF-------LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
S ++ L LD+S N + +N + I+ ++
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK-SQAFSLILAHHIMGAGF 247
Query: 173 PKNIFEGDIPYSIGEMKELYMQ--DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI 230
+ + + + ++ DLS L + L + +L+ N
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 231 FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NL 289
+ L +L L L N L + ID+ +N ++ +F L
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSN-----FYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQI---NELSNLHVLLLRGNSLQGHIPNELCHVSRF 346
++ L L+ NA+T + F IP N+L L + L N + N L ++
Sbjct: 362 EKLQTLDLRDNALTTIH-FIPSIPDIFLSGNKLVTLPKINLTANLIHLS-ENRLENLD-- 417
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAI-----PESFS 400
+ F + ++ L L+ N S + + ++ L L N L A + F
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L + L L+HN L+ P + L L +++ N L+
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 106/582 (18%), Positives = 181/582 (31%), Gaps = 89/582 (15%)
Query: 5 NLKNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLT-------S 56
NLK L LDLS N ++ L LK +D S+NQ+ L L S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 57 LEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTS----------- 105
L +S + + LE+L +S + + + S
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 106 QLKVLKLSDCHLHVIPSFL---LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162
+ ++ L + LDLS+ V L +
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-------------SLNSRVFE 287
Query: 163 VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLS 222
L+ L L++ N + + L + +LS N EL G + DL
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346
Query: 223 NNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGS 282
N+ + L L L L +N + + + S+ I + N L
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT----------TIHFIPSIPDIFLSGNKLVTL 396
Query: 283 LVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342
+ ++L +N + + Y + + +L +L+L N ++
Sbjct: 397 PKINLTA---NLIHLSENRLENLDIL-----YFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-----GQLQNIRALNLSNNFLSGAIPE 397
+ L + L L N L E+ L +++ L L++N+L+ P
Sbjct: 449 ENPSLEQ----------LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498
Query: 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQ--------- 448
FS+L L L+ NRL+ + L ++S N L P PD
Sbjct: 499 VFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPDVFVSLSVLDITH 556
Query: 449 --------FATFDESSYTGNHELCGSLIRKKCSSALKPPATP-TEEAGEEEDDSMIDMVA 499
+TF N + G C + E D+ +
Sbjct: 557 NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616
Query: 500 LKWSFGASFVTVILGLFAVLWINSYWRRRWYVFAKILNLVLK 541
F VT+ L L +L + + + + LV K
Sbjct: 617 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFK 658
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 2e-27
Identities = 80/471 (16%), Positives = 148/471 (31%), Gaps = 78/471 (16%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKV-PSTLTNLTSLEYLDRF 63
L L LS N L L++L++ + + NL +L LD
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD-L 80
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQ---VKTETWHPTSQLKVLKLSDCHLHVI 120
+ + ++ L L + L +K + L L LS + +
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLY--FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 121 P--SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN--- 175
+ L +D S+N+ + + + + L + + N
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQ----IFLVCEHELE-------PLQGKTLSFFSLAANSLY 187
Query: 176 -IFEGDIPYSIGEMKELYMQ--DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFP 232
D + + + ++ D+S N ++ ++ +N
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT-------------GNFSNAISKSQAF 234
Query: 233 KYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS 291
+ H+ ++ D N L++ S+ +D+ + F L
Sbjct: 235 SLILAHHIMGAGFGFHNIKDP--DQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLKD 291
Query: 292 VKHLYLQKNAITG--DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL--------- 340
+K L L N I D F+G L NL VL L N L + +
Sbjct: 292 LKVLNLAYNKINKIADEAFYG--------LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAY 342
Query: 341 -----CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395
H++ + + L+ + LDL N L+ I + +I + LS N L
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397
Query: 396 PESFSNLKMTESLDLSHNRLSG-HIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
+ + + LS NRL I L + L ++ N S + D
Sbjct: 398 KINLTA----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 4e-27
Identities = 77/419 (18%), Positives = 148/419 (35%), Gaps = 62/419 (14%)
Query: 34 KVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNM 93
++ L+ +VP L L S N+ T++ +S +L++L + S
Sbjct: 7 RIAFYRFCNLT-QVPQVLNTTERL----LLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
Query: 94 LQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNF 152
L + E + L++L L ++ + Q +HL L L + + + + F
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL--SDAVLKDGYF 119
Query: 153 AGKLPRNMGIVLQKLIYLDMPKN-IFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVS 211
L+ L LD+ KN I + S G++ L D S N + + +
Sbjct: 120 RN---------LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELE 169
Query: 212 GCVALDL--FDLSNNNFFGQIFPKYMNL------THLHWLYLDNNHFSGKMDDANILVQL 263
L F L+ N+ + ++ + L L + N ++
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT------------ 217
Query: 264 SQLKSLELIDIFENSLSGSLVSSFNLS-SVKHLYLQKNAITG-DNKFFGRIPYQINELSN 321
+++ F N++S S S L+ + + I D F + S+
Sbjct: 218 -----VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA-----RSS 267
Query: 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381
+ L L + ++ + +LK L+L+ N+++ L N+
Sbjct: 268 VRHLDLSHGFVF--------SLNSRVFETLKDLKV---LNLAYNKINKIADEAFYGLDNL 316
Query: 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ LNLS N L +F L +DL N ++ L L ++ N L+
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDL 410
L L LS N + L+ ++ L L + + I E+F NL LDL
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 411 SHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPDKEQFA 450
+++ + P GL L + + LS F
Sbjct: 81 GSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-34
Identities = 80/454 (17%), Positives = 155/454 (34%), Gaps = 49/454 (10%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
+ D S +F IP L +K LD+S N+++ L +L+ L
Sbjct: 2 LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLI-L 57
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIP- 121
+ TI ++ + LE L +S N L + + + P S LK L L +
Sbjct: 58 KSSRINTIEGDAFYSLGSLEHLDLS--DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115
Query: 122 -SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
S +L L + N ++ R L L L++
Sbjct: 116 TSLFPNLTNLQTLRI------------GNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN--------FFGQIFP 232
S+ +++++ L + + L + ++ +L + N
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 233 KYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS 291
M L + F+ + +++LS+++ + + S L
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY 351
V+ + +++ I F + + L + + + + + +P C S+ L
Sbjct: 283 VETVTIRRLHIP-QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP---CSFSQHL---- 333
Query: 352 SNLKYMAGLDLSSNELSGEIPRE---IGQLQNIRALNLSNNFLS--GAIPESFSNLKMTE 406
+L++ LDLS N + E + G +++ L LS N L E LK
Sbjct: 334 KSLEF---LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 407 SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
SLD+S N +P + N+S +
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-33
Identities = 81/454 (17%), Positives = 153/454 (33%), Gaps = 47/454 (10%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYLDRF 63
+L +L LDLS N+ L+ LK L++ N V S NLT+L+ L
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
++ I A + L L I ++ ++++ + L L +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 124 LLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ +L+L + + S + + + D N +
Sbjct: 191 FADILSSVRYLELRDTNLARFQF--SPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLL 247
Query: 183 YSIGEMKELYMQDLSRNNF-------SGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235
I E+ E+ D + N S + + V + + F + Y
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF----NLSS 291
L + + ++N+ LKSLE +D+ EN + + + S
Sbjct: 308 LLEKVKRITVENSKVFLVPCSF-----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY 351
++ L L +N + + + L NL L + N+ +P+
Sbjct: 363 LQTLVLSQNHLR----SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-------- 409
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
+++ L+LSS + + I Q + L++SNN L + L+ L +S
Sbjct: 410 EKMRF---LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYIS 459
Query: 412 HNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
N+L +P + L +S N L
Sbjct: 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-29
Identities = 66/414 (15%), Positives = 129/414 (31%), Gaps = 53/414 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L +L EL++ + + + Q L ++ + L + ++ + + L+S+ YL+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE-LR 204
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ L + + + S L + ++
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRG--------------SVLTDESFNELLKLLRYI 250
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
L+ + F D + N + N + + + + + L +P+ D+
Sbjct: 251 LELSEVEFDDCTLNGL-----GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM---NLTHLH 241
++++ + + +P +L+ DLS N + L
Sbjct: 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
L L NH IL+ L L SL DI N+ S ++ L L
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSL---DISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361
I + I L VL + N+L F L+ L
Sbjct: 422 IR-------VVKTCI--PQTLEVLDVSNNNLD------------SFSLFLPRLQE---LY 457
Query: 362 LSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
+S N+L +P + + + +S N L F L + + L N
Sbjct: 458 ISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 31/255 (12%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLTHLHWLYLDNNHFSGK 253
D +F+ +P + + +LDL + N I + +L L L ++ +
Sbjct: 11 DGRSRSFT-SIPSGLTAAMKSLDL----SFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT--GDNKFFG 310
DA L SLE +D+ +N LS S F LSS+K+L L N G F
Sbjct: 66 EGDA-----FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Query: 311 RIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370
L+NL L + I + L + L++ + L
Sbjct: 121 -------NLTNLQTLRIGNVETFSEIRRIDF----------AGLTSLNELEIKALSLRNY 163
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430
+ + +++I L L + + + L L+L L+ L S
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223
Query: 431 NFNVSYNNLSGPTPD 445
S T +
Sbjct: 224 PMKKLAFRGSVLTDE 238
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 60/375 (16%), Positives = 125/375 (33%), Gaps = 76/375 (20%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL-- 60
+ +++++ L L + + + L+ ++ L++ + L+ S L +
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227
Query: 61 -------------------------------DRFSINFQGTIS---INSLANHSKLEVLL 86
D ++N G + + ++ K+E +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 87 IS----SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNKVV 141
I + + + ++K + + + + ++P QH L FLDLS N +V
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
Query: 142 GNFPICSNNNFAGKLPRNMGIVLQ--KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRN 199
N+ G P +VL L + I +K L D+SRN
Sbjct: 348 EE--YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT--------LKNLTSLDISRN 397
Query: 200 NFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANI 259
F +P + +LS+ ++ L L + NN+ +
Sbjct: 398 TFH-PMP-DSCQWPEKMRFLNLSSTGI--RVVKTC-IPQTLEVLDVSNNNLD------SF 446
Query: 260 LVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG-DNKFFGRIPYQINE 318
+ L +L+ L I N L +L + + + + +N + + F R
Sbjct: 447 SLFLPRLQEL---YISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDR------- 495
Query: 319 LSNLHVLLLRGNSLQ 333
L++L + L N
Sbjct: 496 LTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ + L+LSS + C+ L+VLD+SNN L L L L Y+
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL-YIS 459
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLH 118
R + ++ + L V+ IS N L+ V + + L+ + L
Sbjct: 460 RNKLK-----TLPDASLFPVLLVMKIS--RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-33
Identities = 86/478 (17%), Positives = 151/478 (31%), Gaps = 86/478 (17%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYLDRF 63
L +L +L N + +L LK L++++N + S K+P +NLT+LE+LD
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-L 156
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
S N +I L ++ +L +S L LS ++ I
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS---------------------LDLSLNPMNFIQPG 195
Query: 124 LLQHYHLIFLDLSNNKVVGNFP-------------------ICSNNNFAGKLPRNMGIVL 164
+ L L L NN N + N K ++ L
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGL 254
Query: 165 QKLIYLDMPKN---IFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDL 221
L + + DI + + L G L+L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 222 SNNNFFGQIF----------------PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265
F ++L L +L L N S K + +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI--NELSNLH 323
LK L D+ N + + L ++HL Q + + ++ L NL
Sbjct: 375 LKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLI 424
Query: 324 VLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIR 382
L + + +S +L+ L ++ N +I +L+N+
Sbjct: 425 YLDISHTHTRVAFNGIFNGLS--------SLEV---LKMAGNSFQENFLPDIFTELRNLT 473
Query: 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L+LS L P +F++L + L+++ N+L L L + N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-33
Identities = 83/470 (17%), Positives = 159/470 (33%), Gaps = 58/470 (12%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
+ L LDLS + +L+HL L ++ N + + L+SL+ L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV-A 107
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVIP 121
++ + + L+ L ++ N++Q E + + L+ L LS + I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 122 SFLLQ-----HYHLIFLDLSNNKVVGNFPIC-----------SNNNFAGKLPRNMGIVLQ 165
L+ + LDLS N + P NN + + + L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 166 KLIYLDMPKNIFEG-----DIPYSI-GEMKELYMQ--DLSRNNFSGELPQPIVSGCVALD 217
L + F S + L ++ L+ ++ + + + +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 218 LFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN 277
F L + + + L L N F +LKSL+ + N
Sbjct: 286 SFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQ--------FPTLKLKSLKRLTFTSN 335
Query: 278 SLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337
+ S +L S++ L L +N ++ F G ++L L L N + +
Sbjct: 336 KGG-NAFSEVDLPSLEFLDLSRNGLS----FKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389
Query: 338 NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIP 396
+ + L++ LD + L + L+N+ L++S+ A
Sbjct: 390 SNFLGL--------EQLEH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 397 ESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLSGPTPD 445
F+ L E L ++ N + P T L L+ ++S L +P
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 88/458 (19%), Positives = 156/458 (34%), Gaps = 37/458 (8%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + N+ NF IP L K LD+S N L + + L+ LD
Sbjct: 4 VEVVPNI-TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD- 58
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
S TI + + S L L++ +G+ + + + S L+ L + +L + +
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 123 FLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
F + H L L++++N + F+ L L +LD+ N +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQS---FKLPEYFSN---------LTNLEHLDLSSNKIQSIY 165
Query: 182 PYSIGEMKELYMQ----DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-N 236
+ + ++ + DLS N + + + L L NN + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 237 LTHLHWLYLDNNHFSG----KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS 291
L L L F + D + L L L E + + ++ F L++
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY 351
V L I F +Q EL N L+
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 352 SNLKYMAGLDLSSNELS--GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLD 409
+L + LDLS N LS G + +++ L+LS N + + +F L+ E LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402
Query: 410 LSHNRLSGHIPPQ--LTGLNFLSNFNVSYNNLSGPTPD 445
H+ L + L L ++S+ +
Sbjct: 403 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-21
Identities = 72/422 (17%), Positives = 139/422 (32%), Gaps = 92/422 (21%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQ-CLNNLTHLKVLDI------SNNQLSGKVPSTLTNL 54
G L +L L +N ++ + C+ L L+V + + L S L L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 55 TSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSD 114
+L ++ F + + + + + L + S ++ + + + + L+L +
Sbjct: 255 CNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 115 CHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK 174
C P+ L+ L L ++NK + + L L +LD+ +
Sbjct: 314 CKFGQFPTLKLK--SLKRLTFTSNK------GGNAFSEVD---------LPSLEFLDLSR 356
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
N L + + G +L DLS N + +
Sbjct: 357 N--------------GLSFKGCCSQSD---------FGTTSLKYLDLSFNGVI-TMSSNF 392
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKH 294
+ L L L ++ LK + +F +L ++ +
Sbjct: 393 LGLEQLEHLDFQHS----------------NLKQMSEFSVFL-----------SLRNLIY 425
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L + N LS+L VL + GNS Q + + ++ L
Sbjct: 426 LDISHTHTRVAF------NGIFNGLSSLEVLKMAGNSFQENFLPD----------IFTEL 469
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+ + LDLS +L P L +++ LN+++N L F L + + L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 415 LS 416
Sbjct: 530 WD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 57/306 (18%), Positives = 100/306 (32%), Gaps = 55/306 (17%)
Query: 4 CNLKNLFELDLSSNNFEGHIP-QCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
L N+ L S E HL++++ Q L SL+ L
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTF 332
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGS-NMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
S + S + LE L +S + +++ T+ LK L LS + +
Sbjct: 333 TSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
S L L LD ++ + + L+ LIYLD
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------LRNLIYLD---------- 427
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHL 240
+S + I +G +L++ ++ N+F P L +L
Sbjct: 428 --------------ISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQK 299
+L L A + L SL+++++ N L F L+S++ ++L
Sbjct: 473 TFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 300 NAITGD 305
N
Sbjct: 528 NPWDCS 533
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 94/441 (21%), Positives = 161/441 (36%), Gaps = 67/441 (15%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ + L NLT+L L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+ I+ L N + L L +SS N + + L+ L + + P
Sbjct: 119 ---LFNNQITDIDPLKNLTNLNRLELSS--NTIS-DISALSGLTSLQQLSFGNQVTDLKP 172
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
L L LD+S+NKV + L L L N
Sbjct: 173 --LANLTTLERLDISSNKVSDISVLAK---------------LTNLESLIATNNQISDIT 215
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
P +G + L L+ N ++ L DL+NN LT L
Sbjct: 216 P--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 268
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
L L N S + L+ L +L +++ EN L + NL ++ +L L N
Sbjct: 269 ELKLGANQISN-------ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNN 320
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361
I+ + ++ L+ L L N + + L +NL + L
Sbjct: 321 ISDIS--------PVSSLTKLQRLFFYNNKVSD--VSSL-----------ANLTNINWLS 359
Query: 362 LSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421
N++S P + L I L L++ + A +N+ + ++ L P
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APA 415
Query: 422 QLTGLNFLSNFNVSYNNLSGP 442
++ + ++++N S
Sbjct: 416 TISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 92/441 (20%), Positives = 150/441 (34%), Gaps = 67/441 (15%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+L + L + + L +L ++ SNNQL+ P L NLT L +
Sbjct: 42 QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL- 96
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+N I LAN + L L + +N + + T L L+LS + I +
Sbjct: 97 --MNNNQIADITPLANLTNLTGLTLF--NNQITDIDPLKNLT-NLNRLELSSNTISDISA 151
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L L L N + A L L LD+ N
Sbjct: 152 -LSGLTSLQQLSFGNQ-------VTDLKPLAN---------LTTLERLDISSNKVSD--I 192
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
+ ++ L + N S P + LD L+ N + +LT+L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL--KDIGTLASLTNLTD 247
Query: 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAI 302
L L NN S L LS L L + + N +S ++ L+++ +L L +N +
Sbjct: 248 LDLANNQISN-------LAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL 299
Query: 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
I+ L NL L L N++ P S+L + L
Sbjct: 300 ED--------ISPISNLKNLTYLTLYFNNISDISP-------------VSSLTKLQRLFF 338
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422
+N++S + L NI L+ +N +S P +NL L L+ +
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394
Query: 423 LTGLNFLSNFNVSYNNLSGPT 443
++ + L P
Sbjct: 395 KANVSIPNTVKNVTGALIAPA 415
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 9e-31
Identities = 86/444 (19%), Positives = 151/444 (34%), Gaps = 69/444 (15%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L + L N + +L + L + + L +L ++
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN--- 74
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ I L N +KL +L++ +N + T + T L L L + + I
Sbjct: 75 FSNNQLTDITPLKNLTKLVDILMN--NNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 131
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
+L L+LS+N + + L L L + +
Sbjct: 132 NLT-NLNRLELSSNTISDISALSG---------------LTSLQQLSFGNQVTD---LKP 172
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244
+ + L D+S N S +++ L+ +NN LT+L L
Sbjct: 173 LANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQI--SDITPLGILTNLDELS 227
Query: 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG 304
L+ N + L+ L +L +D+ N +S +L L+ + L L N I+
Sbjct: 228 LNGNQLKD-------IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISN 279
Query: 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364
+ G L+ L L L N L+ P SNLK + L L
Sbjct: 280 ISPLAG--------LTALTNLELNENQLEDISPI-------------SNLKNLTYLTLYF 318
Query: 365 NELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424
N +S P + L ++ L NN +S S +NL L HN++S P L
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 372
Query: 425 GLNFLSNFNVSYNNLSGPTPDKEQ 448
L ++ ++ + + +
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKA 396
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-29
Identities = 84/436 (19%), Positives = 157/436 (36%), Gaps = 68/436 (15%)
Query: 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68
L ++ + I L + ++ V T+L + L +
Sbjct: 3 LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQ---ADRL 56
Query: 69 GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHY 128
G SI+ + + L + S +N L T + T +L + +++ + I L
Sbjct: 57 GIKSIDGVEYLNNLTQINFS--NNQLTDITPLKNLT-KLVDILMNNNQIADITP-LANLT 112
Query: 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
+L L L NN++ P+ + L L L++ N ++ +
Sbjct: 113 NLTGLTLFNNQITDIDPLKN---------------LTNLNRLELSSNTISD--ISALSGL 155
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
L N + P ++ L+ D+S+N LT+L L NN
Sbjct: 156 TSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209
Query: 249 HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308
S + L L +L+ + + N L + + +L+++ L L N I+
Sbjct: 210 QISD-------ITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN---- 257
Query: 309 FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368
+ ++ L+ L L L N + P + L + L+L+ N+L
Sbjct: 258 ---LA-PLSGLTKLTELKLGANQISNISPL-------------AGLTALTNLELNENQLE 300
Query: 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428
P I L+N+ L L N +S P S+L + L +N++S L L
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354
Query: 429 LSNFNVSYNNLSGPTP 444
++ + +N +S TP
Sbjct: 355 INWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-26
Identities = 88/441 (19%), Positives = 147/441 (33%), Gaps = 90/441 (20%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ NL NL L L +N P L NLT+L L++S+N +S S L+ LTSL+ L
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 162
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
F + +L L+ L +S + I
Sbjct: 163 -FGNQVTDLKPLANLTT----------------------------LERLDISSNKVSDIS 193
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
L + +L L +NN++ P+ L L L + N + DI
Sbjct: 194 V-LAKLTNLESLIATNNQISDITPLGI---------------LTNLDELSLNGNQLK-DI 236
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
++ + L DL+ N S P +SG L L N LT L
Sbjct: 237 G-TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTALT 290
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
L L+ N + +S LK+L + ++ N++S + +L+ ++ L+ N
Sbjct: 291 NLELNENQLED-------ISPISNLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFYNNK 342
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361
++ + L+N++ L N + P +NL + L
Sbjct: 343 VSD--------VSSLANLTNINWLSAGHNQISDLTP-------------LANLTRITQLG 381
Query: 362 LSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRLSGHIP 420
L+ + N+ N N I P + S+ D++ N S
Sbjct: 382 LNDQAWTNAPV---NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TN 437
Query: 421 PQLTGLNFLSNFNVSYNNLSG 441
+ SG
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSG 458
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 7e-21
Identities = 87/419 (20%), Positives = 141/419 (33%), Gaps = 88/419 (21%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ NL NL L+LSSN L+ LT L+ L N L NLT+LE LD
Sbjct: 130 LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLD- 183
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
IS N +++ S L L + L+ L ++ + I
Sbjct: 184 --------ISSNKVSDISVLAKL-------------------TNLESLIATNNQISDITP 216
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L +L L L+ N++ + S L L LD+ N P
Sbjct: 217 -LGILTNLDELSLNGNQLKDIGTLAS---------------LTNLTDLDLANNQISNLAP 260
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
+ + +L L N S P ++G AL +L+ N + NL +L +
Sbjct: 261 --LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQL--EDISPISNLKNLTY 313
Query: 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAI 302
L L N+ S + +S L L+ + + N +S + S NL+++ L N I
Sbjct: 314 LTLYFNNISD-------ISPVSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQI 365
Query: 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
+ + L+ + L L + N +VS +
Sbjct: 366 SD--------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSI--------------PNT 403
Query: 363 SSNELSGEI-PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420
N I P I + +++ N S E ++ SG +
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 2e-18
Identities = 68/333 (20%), Positives = 115/333 (34%), Gaps = 69/333 (20%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ NL L LD+SSN L LT+L+ L +NNQ+S + L LT+L+ L
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDEL 226
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
++ N L + I + +++ + L L L++ + +
Sbjct: 227 S---------LNGNQLKD--------IGTLASL-----------TNLTDLDLANNQISNL 258
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
L L L L N++ P+ L L L++ +N E
Sbjct: 259 AP-LSGLTKLTELKLGANQISNISPLAG---------------LTALTNLELNENQLEDI 302
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
P I +K L L NN S P VS L NN NLT++
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKV--SDVSSLANLTNI 355
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
+WL +N S L L+ L + + + + + + + V+ S+ +
Sbjct: 356 NWLSAGHNQISD-------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Query: 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQ 333
P I++ + + N
Sbjct: 409 GAL-------IAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 30/252 (11%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L NL +LDL++N P L+ LT L L + NQ+S S L LT+L L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLE 293
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+N I+ ++N L L + N + + T +L+ L + + +
Sbjct: 294 ---LNENQLEDISPISNLKNLTYLTLY--FNNISDISPVSSLT-KLQRLFFYNNKVSDVS 347
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
S L ++ +L +N++ P+ + L ++ L + +
Sbjct: 348 S-LANLTNINWLSAGHNQISDLTPLAN---------------LTRITQLGLNDQAWTNAP 391
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ + +N + +S + D++ N +
Sbjct: 392 VNYKANVSIP---NTVKNVTGALIAPATISDGGSYTEPDITWNL-PSYTNEVSYTFSQPV 447
Query: 242 WLYLDNNHFSGK 253
+ FSG
Sbjct: 448 TIGKGTTTFSGT 459
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 73/413 (17%), Positives = 144/413 (34%), Gaps = 87/413 (21%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+L L + + L + L ++ +++ + LT+LEYL+
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN--- 72
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
++ N + + S L L +L L + + I +
Sbjct: 73 ------LNGNQITDISPLSNL-------------------VKLTNLYIGTNKITDISALQ 107
Query: 125 -LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
L +L L L+ + + P+ + L K+ L++ N D+
Sbjct: 108 NLT--NLRELYLNEDNISDISPLAN---------------LTKMYSLNLGANHNLSDLS- 149
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
+ M L ++ + P ++ L L+ N + +LT LH+
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQI--EDISPLASLTSLHYF 204
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303
N + + ++ + L + I N ++ L NLS + L + N I+
Sbjct: 205 TAYVNQITD-------ITPVANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQIS 256
Query: 304 GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363
I + +L+ L +L + N + I +NL + L L+
Sbjct: 257 D-------INA-VKDLTKLKMLNVGSNQISD-ISV------------LNNLSQLNSLFLN 295
Query: 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416
+N+L E IG L N+ L LS N ++ P ++L +S D ++ +
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 69/435 (15%), Positives = 141/435 (32%), Gaps = 111/435 (25%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
L P +L + ++ T L S+ L
Sbjct: 4 TLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLV--------- 50
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
++ +A+ +E L + L+ L L+ + I L L
Sbjct: 51 VAGEKVASIQGIEYL-------------------TNLEYLNLNGNQITDISP-LSNLVKL 90
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
L + NK+ DI ++ +
Sbjct: 91 TNLYIGTNKIT--------------------------------------DIS-ALQNLTN 111
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHF 250
L L+ +N S P ++ + +L N+ + N+T L++L + +
Sbjct: 112 LRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKV 167
Query: 251 SGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFF 309
+ ++ L L + + N + +S +L+S+ + N IT
Sbjct: 168 KD-------VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD----- 213
Query: 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369
I + ++ L+ L + N + P +NL + L++ +N++S
Sbjct: 214 --ITP-VANMTRLNSLKIGNNKITDLSP-------------LANLSQLTWLEIGTNQISD 257
Query: 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429
+ L ++ LN+ +N +S +NL SL L++N+L + GL L
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
Query: 430 SNFNVSYNNLSGPTP 444
+ +S N+++ P
Sbjct: 314 TTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 59/278 (21%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ NL ++ L+L +N+ + L+N+T L L ++ +++ + + NLT L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLS- 183
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
++ N + + S L L + L + I
Sbjct: 184 --------LNYNQIEDISPLASL-------------------TSLHYFTAYVNQITDITP 216
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ L L + NNK+ P+ + L +L +L++ N DI
Sbjct: 217 -VANMTRLNSLKIGNNKITDLSPLAN---------------LSQLTWLEIGTNQIS-DIN 259
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
++ ++ +L M ++ N S +++ L+ L+NN + LT+L
Sbjct: 260 -AVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
L+L NH + + L+ L ++ D +
Sbjct: 316 LFLSQNHITD-------IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L +L N P + N+T L L I NN+++ S L NL+ L +L+
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLE 249
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VI 120
I IN++ + +KL++L + SN + + SQL L L++ L
Sbjct: 250 ---IGTNQISDINAVKDLTKLKMLNVG--SNQIS-DISVLNNLSQLNSLFLNNNQLGNED 303
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNN 151
+ +L L LS N + P+ S +
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSK 334
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ N+ L L + +N P L NL+ L L+I NQ+S + + +LT L+ L+
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKT-ETWHPTSQLKVLKLSDCHLHVI 120
+ I+ L N S+L L ++ +N L + E + L L LS H+ I
Sbjct: 272 ---VGSNQISDISVLNNLSQLNSLFLN--NNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 121 PSFLLQHYHLIFLDLSNNKV 140
L + D +N +
Sbjct: 327 RP-LASLSKMDSADFANQVI 345
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 72/455 (15%), Positives = 138/455 (30%), Gaps = 51/455 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
N ++ ++ + + + ++K LD+S N LS + L T LE L+ S
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
L + S L L ++ +N +Q ++ L ++ ++ +
Sbjct: 68 NVLY---ETLDLESLSTLRTLDLN--NNYVQ----ELLVGPSIETLHAANNNISRVSCSR 118
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN-IFEGDIPY 183
Q + L+NNK+ L ++ YLD+ N I +
Sbjct: 119 GQ--GKKNIYLANNKIT-------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
L +L N ++ + L DLS+N + P++ + + W+
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI 219
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303
L NN I L ++LE D+ N + F + + + K +
Sbjct: 220 SLRNNKLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
Query: 304 GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363
++ Q E + L G +P L R L L
Sbjct: 274 -------KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL-----LSGQ 321
Query: 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP--- 420
+E + E R ++ I + + +L+ L +
Sbjct: 322 GSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 421 PQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDES 455
L+ V L T ++
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 56/417 (13%), Positives = 117/417 (28%), Gaps = 50/417 (11%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ +L L LDL++N Q L ++ L +NN +S S ++ YL
Sbjct: 76 LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNI-YLAN 129
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVI 120
I + S+++ L + N + E + L+ L L ++ +
Sbjct: 130 NKIT---MLRDLDEGCRSRVQYLDLK--LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
++ L LDLS+NK+ + + ++ + N
Sbjct: 185 KGQVVFA-KLKTLDLSSNKLA-------------FMGPEFQS-AAGVTWISLRNNKLV-L 228
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
I ++ + L DL N F + S + ++ T
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
+ + + K L+ + N + + + K
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346
Query: 301 AITGDNKFFGRIPYQINE-LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359
+ Q+ L + +L R ++ L
Sbjct: 347 QYR-------TVIDQVTLRKQAKITLEQKKKALD--------EQVSNGRRAHAELDGTLQ 391
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416
+ EL E LQ +RA+ + + + D+ ++ +
Sbjct: 392 QAVGQIELQH-ATEEQSPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTE 406
+H N ++ + L + N++ L+LS N LS + E
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 407 SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L+LS N L L L+ L +++ N +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430
I + ++++ L A+ + + LDLS N LS L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 431 NFNVSYNNLSGPTP 444
N+S N L
Sbjct: 62 LLNLSSNVLYETLD 75
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 14/140 (10%), Positives = 38/140 (27%), Gaps = 2/140 (1%)
Query: 2 GICNLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ +NL DL N F G + + ++ + + + +L +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
+ + L + E L+S + + ++ + + +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Query: 121 PSFLLQH-YHLIFLDLSNNK 139
+ I L+
Sbjct: 352 IDQVTLRKQAKITLEQKKKA 371
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 67/344 (19%), Positives = 114/344 (33%), Gaps = 78/344 (22%)
Query: 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164
+ VL + + L +P L H+ L + +N + LP
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLT-------------SLPALPP--- 81
Query: 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
+L L++ N +P + EL + + L + N
Sbjct: 82 -ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGN 131
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
P L L + +N + ++ S+L L + N L+ SL
Sbjct: 132 QL--TSLPV--LPPGLQELSVSDNQLA------SLPALPSELCKL---WAYNNQLT-SL- 176
Query: 285 SSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344
S ++ L + N + +P +EL L R SL
Sbjct: 177 -PMLPSGLQELSVSDNQLA-------SLPTLPSELYKLWAYNNRLTSLPALP-------- 220
Query: 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKM 404
S LK L +S N L+ +P +L+ L +S N L+ ++P S L
Sbjct: 221 -------SGLKE---LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL-- 263
Query: 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQ 448
SL + N+L+ +P L L+ + N+ N LS T +
Sbjct: 264 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 68/456 (14%), Positives = 119/456 (26%), Gaps = 133/456 (29%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ C L++ + +P CL H+ L I +N L+ +P+ L +LE
Sbjct: 34 MRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE-- 87
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
+S L +
Sbjct: 88 ---------------------------------------------------VSGNQLTSL 96
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
P L LP + L L + N
Sbjct: 97 PVLPPGLLELSIFSNPLT----------------HLPA----LPSGLCKLWIFGNQLT-S 135
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
+P ++EL +S N + LP L NN P + L
Sbjct: 136 LPVLPPGLQEL---SVSDNQLA-SLPALPSE----LCKLWAYNNQL--TSLPM--LPSGL 183
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
L + +N + ++ S+L L + SL S +K L + N
Sbjct: 184 QELSVSDNQLA------SLPTLPSELYKLWAYNNRLTSLPAL------PSGLKELIVSGN 231
Query: 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGL 360
+T +P S L L++ GN L +P S L L
Sbjct: 232 RLT-------SLP---VLPSELKELMVSGNRLT-SLPMLP-----------SGLLS---L 266
Query: 361 DLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS--GH 418
+ N+L+ +P + L + +NL N LS ++ + S +
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPIIRFDM 322
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDE 454
+ + + + +
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 59/401 (14%), Positives = 112/401 (27%), Gaps = 85/401 (21%)
Query: 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86
++ + + L + L+ DR S AN + ++
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQIET 62
Query: 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPI 146
+ + L+L L P + HL + + ++
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM----- 117
Query: 147 CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
+LP M L L + +N +P SI + L + ELP
Sbjct: 118 --------ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167
Query: 207 QPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
+P+ S + + L N L L L+
Sbjct: 168 EPLASTDASGEHQGLVN----------------LQSLRLEWTGIR--------------- 196
Query: 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325
SL +S NL ++K L ++ + ++ + I+ L L L
Sbjct: 197 ---------------SLPASIANLQNLKSLKIRNSPLSA-------LGPAIHHLPKLEEL 234
Query: 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALN 385
LRG + + P + LK L L +P +I +L + L+
Sbjct: 235 DLRGCTALRNYPPIFGGRA--------PLKR---LILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426
L +P + L + + + + +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 50/358 (13%), Positives = 83/358 (23%), Gaps = 71/358 (19%)
Query: 102 HPTSQLKVLKLSDC-HLHVIPSFLLQHYHLIFLDLSNNKVVGNFP-------ICSNNNFA 153
H +S + L L L Q D +
Sbjct: 9 HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68
Query: 154 GKLPRNMGI-VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG 212
+ + L++ P + L + ELP +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-- 124
Query: 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272
L L L N + ++ L L +
Sbjct: 125 -----------------------QFAGLETLTLARNPLR------ALPASIASLNRLREL 155
Query: 273 DIFENSLSGSLVSSF----------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322
I L L +++ L L+ I +P I L NL
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQNL 208
Query: 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR 382
L +R + L + + +L + LDL P G ++
Sbjct: 209 KSLKIRNSPLS-ALGPAIH-----------HLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L L + +P L E LDL +P + L V + +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-21
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 34/246 (13%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
L +L + + + +P + L+ L ++ N L +P+++ +L L L
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS- 156
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+ +L L S + + L+ L+L + +P+
Sbjct: 157 -------------IRACPELTELPEPLASTDASGEHQGL---VNLQSLRLEWTGIRSLPA 200
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ +L L + N+ + L + L KL LD+ + P
Sbjct: 201 SIANLQNLKSLKIRNSPLS-------------ALGPAIHH-LPKLEELDLRGCTALRNYP 246
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
G L L + LP I L+ DL ++ L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 243 LYLDNN 248
+ + +
Sbjct: 306 ILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 15/143 (10%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
L NL L L +P + NL +LK L I N+ LS + + +L LE LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTS-----QLKVLKLSDCH 116
+ L+ L++ SN+L + P QL+ L L C
Sbjct: 236 LRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCV 288
Query: 117 -LHVIPSFLLQHYHLIFLDLSNN 138
L +PS + Q + + +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL 57
I L L +LDL +P + L ++ + + + +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 67/434 (15%), Positives = 131/434 (30%), Gaps = 106/434 (24%)
Query: 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68
+++ + + + L + K++ N+ + + L + +E L+ +
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN-LNDLQI 81
Query: 69 GTISINSLANHSKLEVLLISSGSNML-QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH 127
I + A ++ L + N + + + L VL L L +P + +
Sbjct: 82 EEIDTYAFAYAHTIQKLYMG--FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 128 -YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
L L +SNN + ++ + L L
Sbjct: 140 TPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNL---------------- 170
Query: 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246
LS N L DLS + L +
Sbjct: 171 --------QLSSNR---------------LTHVDLS-------------LIPSLFHANVS 194
Query: 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDN 306
N S L+ ++E +D NS++ V + L LQ N +T
Sbjct: 195 YNLLS----------TLAIPIAVEELDASHNSINV--VRGPVNVELTILKLQHNNLTDTA 242
Query: 307 KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE 366
L + L N L+ I + ++ + L +S+N
Sbjct: 243 WLLN--------YPGLVEVDLSYNELE-KIMYHP----------FVKMQRLERLYISNNR 283
Query: 367 LSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426
L + + ++ L+LS+N L + + E+L L HN + +
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--H 338
Query: 427 NFLSNFNVSYNNLS 440
+ L N +S+N+
Sbjct: 339 HTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-25
Identities = 63/414 (15%), Positives = 127/414 (30%), Gaps = 106/414 (25%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L N + ++ L++ +++L++++ Q+ +++ L
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY--- 99
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ N++ + + L VL L L +P +
Sbjct: 100 ------MGFNAIR-----------------YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136
Query: 125 LQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
+ L L +SNN + ++ + L L + N +
Sbjct: 137 FHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLT-HVD- 181
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
+ + L+ ++S N S ++ +A++ D S+N+ + + L L
Sbjct: 182 -LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSI--NVVRGPV-NVELTIL 231
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303
L +N L+ L N + + L N +
Sbjct: 232 KLQHN-------------NLTDTAWLL-----------------NYPGLVEVDLSYNELE 261
Query: 304 GDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
+I Y ++ L L + N L L+ + + + LDL
Sbjct: 262 -------KIMYHPFVKMQRLERLYISNNRL------------VALNLYGQPIPTLKVLDL 302
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416
S N L + R Q + L L +N + + LK +L LSHN
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + ELD S N+ + L +L + +N L+ + L N L +D
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD- 254
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
S N I + +LE L IS +N L P LKVL LS HL +
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYIS--NNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 312
Query: 123 FLLQHYHLIFLDLSNNK 139
Q L L L +N
Sbjct: 313 NQPQFDRLENLYLDHNS 329
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
+ + E L N + + N+ + + + E L+L+
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 412 HNRLSGHIPPQ-LTGLNFLSNFNVSYNNLS 440
++ I + + + +N +
Sbjct: 78 DLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 106
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL 57
+ L LDLS N+ H+ + L+ L + +N + ST L +L
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 79/451 (17%), Positives = 153/451 (33%), Gaps = 89/451 (19%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
L C + EL+L++ +P+ +L L S N L+ ++P +L SL
Sbjct: 65 LRDCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVD 119
Query: 61 DRFSINFQGTISINSLANH-SKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
+ ++ +L++ LE L +S +N L+ E + + LK++ + + L
Sbjct: 120 N---------NNLKALSDLPPLLEYLGVS--NNQLEKLPELQNSSF-LKIIDVDNNSLKK 167
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+P L F+ NN++ P N L L + N +
Sbjct: 168 LPDLPPS---LEFIAAGNNQLE-ELPELQN--------------LPFLTAIYADNNSLK- 208
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH 239
+P ++ + N ELP+ + L NN + P
Sbjct: 209 KLPDLPLSLESI---VAGNNILE-ELPE--LQNLPFLTTIYADNNLL--KTLPD--LPPS 258
Query: 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQK 299
L L + +N+ + ++ L L++ + + LS ++ +L
Sbjct: 259 LEALNVRDNYLT------DLPELPQSLTFLDVSENIFSGLSEL------PPNLYYLNASS 306
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF------LHRFYSN 353
N I + + +L L + N L +P + R L
Sbjct: 307 NEIR-------SLC---DLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPEL 355
Query: 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413
+ + L + N L E P +++ L ++++ +PE NLK L + N
Sbjct: 356 PQNLKQLHVEYNPLR-EFPDIPESVED---LRMNSHLAE--VPELPQNLK---QLHVETN 406
Query: 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
L P + L ++ + P
Sbjct: 407 PLR-EFPDIPESVEDL---RMNSERVVDPYE 433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-25
Identities = 86/445 (19%), Positives = 135/445 (30%), Gaps = 88/445 (19%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ L E S+N +P N+ + ++ P +
Sbjct: 7 NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+ + N+ L L L+ L S L +P
Sbjct: 66 RDCLDRQAHELE--LNNLGLSSLPELPP---------------HLESLVASCNSLTELPE 108
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L+ + + + P L YL + N E +P
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP--------------------LLEYLGVSNNQLE-KLP 147
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
+ L + D+ N+ +LP S L+ NN + P+ NL L
Sbjct: 148 -ELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQL--EELPELQNLPFLTA 199
Query: 243 LYLDNNHFSGKMDDANILVQL-SQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
+Y DNN L +L SLE I N L L NL + +Y N
Sbjct: 200 IYADNNS----------LKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR------FLHRFYSNLK 355
+ +P + +L L +R N L +P ++
Sbjct: 249 LK-------TLP---DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
+ L+ SSNE+ + L+ LN+SNN L +P L E L S N L
Sbjct: 298 NLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI-ELPALPPRL---ERLIASFNHL 349
Query: 416 SGHIPPQLTGLNFLSNFNVSYNNLS 440
+ +P L L +V YN L
Sbjct: 350 A-EVPELPQNLKQL---HVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 30/146 (20%)
Query: 312 IPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
I + + L L ++L +P E N+K + +E
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEA-----------ENVKSKTEYYNAWSEWERNA 50
Query: 372 PREIGQL-------------QNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
P G+ + L L+N LS ++PE +L ESL S N L+
Sbjct: 51 PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-E 105
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTP 444
+P L L N + LS P
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP 131
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 49/363 (13%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ F +P+ + T ++LD+ N++ + LE L+ + N
Sbjct: 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELE-LNENIVSA 70
Query: 71 ISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-Y 128
+ + N L L + SN L+ + + S L L +S+ + ++ ++ Q Y
Sbjct: 71 VEPGAFNNLFNLRTLGLR--SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
+L L++ +N +V + L L L + K ++ +
Sbjct: 129 NLKSLEVGDNDLV-------------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
L + L N + + L + ++S+ + + P + +L L + +
Sbjct: 176 HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 249 HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT--GD 305
+ + A + L L +++ N +S S L ++ + L +
Sbjct: 235 NLTAVPYLA-----VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 306 NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN 365
F G L+ L VL + GN L + + H L L L SN
Sbjct: 290 YAFRG--------LNYLRVLNVSGNQLT-TLEESVFHSVGNLET----------LILDSN 330
Query: 366 ELS 368
L+
Sbjct: 331 PLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 3e-22
Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 59/360 (16%)
Query: 104 TSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163
++Q + + +P + LDL N + + FA
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIPTE--TRLLDLGKN----RIKTLNQDEFAS--------- 54
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
L L++ +NI P + + L L N +P + +G L D+S
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113
Query: 224 NNFFGQIFPKYM--NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281
N I YM +L +L L + +N A S L SLE + + + +L+
Sbjct: 114 NKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRA-----FSGLNSLEQLTLEKCNLTS 166
Query: 282 SLVSSF-NLSSVKHLYLQKNAIT--GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP- 337
+ +L + L L+ I D F L L VL + +
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--------LYRLKVLEISHWPYLDTMTP 218
Query: 338 ---------------NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNI 381
L V R L++ L+LS N +S I + +L +
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF---LNLSYNPIS-TIEGSMLHELLRL 274
Query: 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYNNLS 440
+ + L L+ P +F L L++S N+L+ + + + L + N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 4e-18
Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 52/280 (18%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L NL +LD+S N + +L +LK L++ +N L + L SLE L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT-LE 160
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSD-CHLHVIPS 122
+I +L++ L VL + + ++ ++ +LKVL++S +L +
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLR--HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L +L L +++ + +P
Sbjct: 219 NCLYGLNLTSLSITHCNLT-----------------------------AVPYLAVRH--- 246
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHL 240
+ L +LS N S + ++ + L L + Y L +L
Sbjct: 247 -----LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLNYL 298
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
L + N + + + +LE + + N L+
Sbjct: 299 RVLNVSGNQLTTLEESV-----FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
+L L L L N L LKVL+IS+ + +L L
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPS 122
N + ++ + L L +S N + ++ H +L+ ++L L V+
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLS--YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 123 FLLQH-YHLIFLDLSNNK 139
+ + +L L++S N+
Sbjct: 290 YAFRGLNYLRVLNVSGNQ 307
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQC-LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
NL L ++ N +P + +L +L+ L++S N +S S L L L+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLS------ 113
+ + + L VL +S N L ++ +H L+ L L
Sbjct: 278 Q-LVGGQLAVVEPYAFRGLNYLRVLNVS--GNQLTTLEESVFHSVGNLETLILDSNPLAC 334
Query: 114 DCHL 117
DC L
Sbjct: 335 DCRL 338
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 37/278 (13%)
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+ + + + + + DLS N S ++ ++ L+L +LS+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
N +L+ L L L+NN+ +L S+E + N++S
Sbjct: 68 NVL--YETLDLESLSTLRTLDLNNNYVQ----------ELLVGPSIETLHAANNNISR-- 113
Query: 284 VSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCH 342
VS K++YL N IT + S + L L+ N + +
Sbjct: 114 VSCSRGQGKKNIYLANNKIT-------MLRDLDEGCRSRVQYLDLKLNEID-TVNF---- 161
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402
++ + L+L N + ++ ++ ++ L+LS+N L+ + F +
Sbjct: 162 -----AELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSA 213
Query: 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ L +N+L I L L +F++ N
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 58/327 (17%), Positives = 111/327 (33%), Gaps = 42/327 (12%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
N ++ ++ + + + ++K LD+S N LS + L T LE L+ S
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN-LS 66
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
N L + S L L ++ +N +Q ++ L ++ ++ +
Sbjct: 67 SNVLYETL--DLESLSTLRTLDLN--NNYVQ----ELLVGPSIETLHAANNNISRVSCSR 118
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN-IFEGDIPY 183
Q + L+NNK+ L ++ YLD+ N I +
Sbjct: 119 GQ--GKKNIYLANNKIT-------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
L +L N ++ + L DLS+N + P++ + + W+
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI 219
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303
L NN I L ++LE D+ N + F + + + K +
Sbjct: 220 SLRNNKLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
Query: 304 GDNKFFGRIPYQINELSNLHVLLLRGN 330
++ Q E + L G
Sbjct: 274 -------KLTGQNEEECTVPTLGHYGA 293
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 9e-19
Identities = 52/328 (15%), Positives = 106/328 (32%), Gaps = 39/328 (11%)
Query: 23 IPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82
I + N K+ ++++ L + S + +++ LD S N IS LA +KL
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELD-LSGNPLSQISAADLAPFTKL 60
Query: 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVG 142
E+L +S SN+L +T S L+ L L++ ++ + + L +NN +
Sbjct: 61 ELLNLS--SNVLY-ETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNI-- 111
Query: 143 NFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS 202
++ + Q + + N G + DL N
Sbjct: 112 -----------SRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 203 GELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ 262
+ + L+ +L N + L L L +N + + +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA------FMGPE 209
Query: 263 LSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSN 321
+ I + N L + + +++H L+ N + ++
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT-----LRDFFSKNQR 263
Query: 322 LHVLLLRGNSLQGHIPNELCHVSRFLHR 349
+ + + E C V H
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 34/207 (16%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKH 294
N + ++ + +++ +D+ N LS + + ++
Sbjct: 8 NGNRYKIEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L L N + + LS L L L N +Q + ++
Sbjct: 63 LNLSSNVLYE-------TL-DLESLSTLRTLDLNNNYVQ-ELLV------------GPSI 101
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+ L ++N +S + Q + + L+NN ++ + LDL N
Sbjct: 102 ET---LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 415 LSGHIPPQLTG-LNFLSNFNVSYNNLS 440
+ +L + L + N+ YN +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY 182
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTE 406
+H N ++ + L + N++ L+LS N LS + E
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 407 SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L+LS N L L L+ L +++ N +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 33/271 (12%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ +L L LDL++N Q L ++ L +NN +S S ++ YL
Sbjct: 76 LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNI-YLAN 129
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVI 120
I + S+++ L + N + E + L+ L L ++ +
Sbjct: 130 NKIT---MLRDLDEGCRSRVQYLDLK--LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
+ L LDLS+NK+ + + ++ + N
Sbjct: 185 KG-QVVFAKLKTLDLSSNKLA-------------FMGPEFQS-AAGVTWISLRNNKLV-L 228
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
I ++ + L DL N F + S + + + L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271
+ + A +L L
Sbjct: 289 ----GHYGAYCCEDLPAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430
I + ++++ L A+ + + LDLS N LS L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 431 NFNVSYNNLSGPTP 444
N+S N L
Sbjct: 62 LLNLSSNVLYETLD 75
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 67/434 (15%), Positives = 130/434 (29%), Gaps = 106/434 (24%)
Query: 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68
+++ + + + L + K++ N+ + + L + +E L+ +
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN-LNDLQI 87
Query: 69 GTISINSLANHSKLEVLLISSGSNML-QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH 127
I + A ++ L + N + + + L VL L L +P + +
Sbjct: 88 EEIDTYAFAYAHTIQKLYMG--FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 128 -YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
L L +SNN + ++ + L L
Sbjct: 146 TPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNL---------------- 176
Query: 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246
LS N L DLS + L +
Sbjct: 177 --------QLSSNR---------------LTHVDLSL-------------IPSLFHANVS 200
Query: 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDN 306
N S L+ ++E +D NS++ V + L LQ N +T
Sbjct: 201 YNLLS----------TLAIPIAVEELDASHNSINV--VRGPVNVELTILKLQHNNLTDTA 248
Query: 307 KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE 366
L + L N L+ I ++ + L +S+N
Sbjct: 249 WLLN--------YPGLVEVDLSYNELE-KIMYHPF----------VKMQRLERLYISNNR 289
Query: 367 LSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426
L + + ++ L+LS+N L + + E+L L HN + +
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--H 344
Query: 427 NFLSNFNVSYNNLS 440
+ L N +S+N+
Sbjct: 345 HTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-13
Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 25/223 (11%)
Query: 221 LSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
N Q K ++ + + H + D + L + +++ +++
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 281 GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPN 338
+ + V+ L L I I + L + N+++ ++P
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIE-------EIDTYAFAYAHTIQKLYMGFNAIR-YLPP 116
Query: 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPE 397
+ + N+ + L L N+LS +PR I + L++SNN L +
Sbjct: 117 HV----------FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
Query: 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+F ++L LS NRL+ H+ L + L + NVSYN LS
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS 205
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + ELD S N+ + L +L + +N L+ + L N L +D
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD- 260
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
S N I + +LE L IS +N L P LKVL LS HL +
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYIS--NNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318
Query: 123 FLLQHYHLIFLDLSNNK 139
Q L L L +N
Sbjct: 319 NQPQFDRLENLYLDHNS 335
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 82/459 (17%), Positives = 155/459 (33%), Gaps = 47/459 (10%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
+ L++S N + +L+ L++L IS+N++ S LEYLD S N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD-LSHN 79
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVIP--S 122
IS + N L++ N + + SQLK L LS HL
Sbjct: 80 KLVKISCHPTVNLKHLDL-----SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ + L L P ++ IV ++ +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDP----EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190
Query: 183 Y-SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ +K + + S L L ++ + + T +
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN-LSSVKHLYLQKN 300
+ + N G++D + + LK+L + + + + S++ +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 301 AIT------------------GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342
+N + L+ L L+L+ N L+ EL
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-----ELSK 365
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSN 401
++ + +L+ LD+S N +S + + +++ +LN+S+N L+ I
Sbjct: 366 IAEMTTQM-KSLQQ---LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ LDL N++ IP Q+ L L NV+ N L
Sbjct: 422 R--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 2e-22
Identities = 68/435 (15%), Positives = 147/435 (33%), Gaps = 49/435 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYLDRF 63
+ L LDLS N I + +LK LD+S N + + N++ L++L
Sbjct: 67 FNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG-L 122
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-- 121
S S+ +A+ + +VLL+ + + L+ H+
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEK------EDPEGLQDFNTESLHIVFPTNK 176
Query: 122 --SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM----PKN 175
F+L +L + + + F L + + L+ +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 176 IFEGDIPYSIGEMKELYMQDLS-RNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
+ + ++ + + AL + + ++ F Y
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVK 293
++++ + +M ++S L+ + N L+ ++ + +L+ ++
Sbjct: 297 EIFSNMNIKNFTVS--GTRMVHMLCPSKISPFLHLDFSN---NLLTDTVFENCGHLTELE 351
Query: 294 HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH----------- 342
L LQ N + K +I ++ +L L + NS+ C
Sbjct: 352 TLILQMNQL----KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 343 ----VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398
+K LDL SN++ IP+++ +L+ ++ LN+++N L
Sbjct: 408 SNILTDTIFRCLPPRIKV---LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 399 FSNLKMTESLDLSHN 413
F L + + L N
Sbjct: 464 FDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 26/254 (10%)
Query: 5 NLKNLFELDLSSNNFEG-----HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEY 59
++ +S+ +G +L L + + ++ +++
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLH 118
+ F+++ + + + S L S+ N+L E ++L+ L L L
Sbjct: 305 KN-FTVSGTRMVHMLCPSKISPFLHLDFSN--NLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
+ + + + + + S N+ + + + L+ L+M NI
Sbjct: 362 ELS-----KIAEMTTQMKSLQQLD----ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK--YMN 236
I + + + DL N +P+ V AL ++++N + P +
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQL--KSVPDGIFDR 466
Query: 237 LTHLHWLYLDNNHF 250
LT L ++L N +
Sbjct: 467 LTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 21/226 (9%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
+LK L + S+ F +++ + + + + + ++ +LD F
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD-F 331
Query: 64 SINFQGTISINSLANHSKLEVLLISSGS-NMLQVKTETWHPTSQLKVLKLSDCHLHVI-- 120
S N + + ++LE L++ L E L+ L +S +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
L+ L++S+N + + LP + LD+ N +
Sbjct: 392 KGDCSWTKSLLSLNMSSNIL--------TDTIFRCLPPR-------IKVLDLHSNKIK-S 435
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
IP + +++ L +++ N +P I +L L N +
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 2e-19
Identities = 46/278 (16%), Positives = 76/278 (27%), Gaps = 33/278 (11%)
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFP---KYMNLTHLHWLYL 245
+ L + + + ++L + +I + + ++ L L L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGD 305
+N +G + L L L + S + L L+ +I
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRN---VSWATRDAWLAELQQWLKPGLKVLSIA-Q 158
Query: 306 NKFFGRIPYQINELSNLHVLLLRGNSLQGHIP--------------------NELCHVSR 345
Q+ L L L N G + S
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218
Query: 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQ-LQNIRALNLSNNFLSGAIPESFSNLKM 404
+ + GLDLS N L + +LNLS L + L
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL-- 276
Query: 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442
LDLS+NRL P L + N ++ N
Sbjct: 277 -SVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 35/293 (11%)
Query: 4 CNLKNLFELDLSSNNF--EGHIPQCLNNLTHLKVLDISNNQLSGKVPST---LTNLTSLE 58
++L L + G + +L+ LK L + ++ ++ + ++ L+
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 59 YLDRFSINFQGTISINSL-ANHSKLEVLLIS----SGSNMLQVKTETWHPTSQLKVLKLS 113
L ++ GT L A L +L + + + + + W LKVL ++
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG-LKVLSIA 157
Query: 114 DCHLHVIPSFLLQHY-HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
H ++ + L LDLS+N +G + + K P LQ L +
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPT-----LQVLALRNA 211
Query: 173 PKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF---FGQ 229
G +L DLS N+ P L+ +LS
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271
Query: 230 IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGS 282
+ K L L L N +L + + + N S
Sbjct: 272 LPAK------LSVLDLSYNRLDR-------NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 20/218 (9%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDI-FENSLSGSLVSSFNLSSVKH 294
L +L + + +I+ LS LK L + + + + +S ++
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L L+ +TG P +L++L LR S L + ++L L
Sbjct: 100 LTLENLEVTGT----APPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLK---PGL 151
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS----NLKMTESLDL 410
K L ++ ++ + L+LS+N G + + L L
Sbjct: 152 KV---LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 411 SHNR---LSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445
+ SG L ++S+N+L
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 10/146 (6%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-------VPSTLTN 53
L L L ++ + + + L LD+S+N G+ P
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202
Query: 54 LTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLS 113
L L L + + A +L+ L +S S + SQL L LS
Sbjct: 203 LQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 114 DCHLHVIPSFLLQHYHLIFLDLSNNK 139
L +P L L LDLS N+
Sbjct: 262 FTGLKQVPKGLPA--KLSVLDLSYNR 285
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 19/168 (11%)
Query: 288 NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
S+++L + + +F I + +L L +R + I L R L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFT-----DIIKSLSLKRLTVRAARIPSRI---LFGALRVL 92
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQ--NIRALNLSNNFLSG--AIPESFSNLK 403
S L+ L L + E++G P + + ++ LNL N + A
Sbjct: 93 G--ISGLQE---LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 404 MT--ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQF 449
+ L ++ Q+ LS ++S N G
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-19
Identities = 76/433 (17%), Positives = 143/433 (33%), Gaps = 47/433 (10%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL-SGKVPSTLTNLTSLEYLDRF 63
++L LD+S N + +I + L+ LD+S N V NLT L +L
Sbjct: 98 FNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Query: 64 -----SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH 118
++ ++ L I G T + L L
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-----TVLHLVFHPNSLF 209
Query: 119 VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
+ + + L L LSN K + + F +L R ++ L +++
Sbjct: 210 SVQVNMSVN-ALGHLQLSNIK-LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 179 GDIPY-SIGEMKELYMQDLS-RNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236
+ ++ L + +L+ E + +L + + N F Y
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHL 295
++ L + +V S ++ +N + S+ L ++ L
Sbjct: 328 FAEMNIKMLSISDTP-----FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY---- 351
LQ+N + K +S+L L + NSL H + C + +
Sbjct: 383 ILQRNGLKNFFKVALM----TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 352 -----------SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400
+K LDL +N + IP+++ LQ ++ LN+++N L F
Sbjct: 439 MLTGSVFRCLPPKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFD 494
Query: 401 NLKMTESLDLSHN 413
L + + L N
Sbjct: 495 RLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 5e-16
Identities = 78/446 (17%), Positives = 151/446 (33%), Gaps = 56/446 (12%)
Query: 12 LDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTI 71
L LS N+ ++ L+ L+VL +S+N++ LEYLD S N I
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD-VSHNRLQNI 115
Query: 72 SINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYH 129
S +A+ L L +S N V + + ++L L LS + + H H
Sbjct: 116 SCCPMAS---LRHLDLSF--NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 130 LIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189
L + L S + G+ L + P ++F + S+ +
Sbjct: 171 LSCILLDLV---------SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221
Query: 190 ELYMQDLSRNNFSGELPQPIVSGCVA------LDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
L + ++ N+ + + +S + L + ++ + +L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFN-LSSVKHLYLQKNAI 302
+ N + ++D + LKSL + + S + ++ + + L +
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS-- 339
Query: 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362
D F + S+ L N + C L+ L L
Sbjct: 340 --DTPFIHMVCPPS--PSSFTFLNFTQNVFT-DSVFQGCS-------TLKRLQT---LIL 384
Query: 363 SSNELSGEIPREIGQLQNIRALNLSNNFL----SGAIPESFSNLKMTESLDLSHNRLSG- 417
N L + +N+ +L + L S A + + + L+LS N L+G
Sbjct: 385 QRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 418 ---HIPPQLTGLNFLSNFNVSYNNLS 440
+PP++ L ++ N +
Sbjct: 444 VFRCLPPKVKVL------DLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 25/227 (11%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
LK+L + + F + + + +S + + +S +L+ F+
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN-FT 361
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
N + +L+ L++ N L+ + T + L+ D L+ + S
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQ--RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 125 LQHY-----HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
++ L+LS+N + G+ C LP + LD+ N
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRC--------LPPK-------VKVLDLHNNRIM- 463
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
IP + ++ L +++ N +P + +L L +N +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
+ LDL +N IP+ + +L L+ L++++NQL LTSL+Y+ +
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 68 Q 68
Sbjct: 510 D 510
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 79/415 (19%), Positives = 140/415 (33%), Gaps = 67/415 (16%)
Query: 5 NLKNLFELDLSSNNFEGHIPQ-CLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
L++L L + I L+ L +L + NQ L +LE L
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT-- 109
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
L+ ++S + P + L++L L D ++ I
Sbjct: 110 -------------LTQCNLDGAVLSGNF---------FKPLTSLEMLVLRDNNIKKIQPA 147
Query: 124 LLQHY--HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
LDL+ NKV IC + + + L + DM + +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKS---ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ + + DLS N F + + + L +N + + H +
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG----SSFGHTN 260
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN 300
+ DN F G ++ S +K+ +L ++ + L S F + + ++ L L +N
Sbjct: 261 FKDPDNFTFKG--------LEASGVKTCDL---SKSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 301 AITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAG 359
I +I L++L L L N L I + + + NL +
Sbjct: 310 EIN-------KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRM----------FENLDKLEV 351
Query: 360 LDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413
LDLS N + + + L N++ L L N L F L + + L N
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 29/338 (8%)
Query: 113 SDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
+ LH +P H+ ++DLS N + +L LQ L +L +
Sbjct: 18 INRGLHQVPELPA---HVNYVDLSLNSI-------------AELNETSFSRLQDLQFLKV 61
Query: 173 PKNIFEGDIPYSI-GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231
+ I + + L + L N F +L +G L++ L+ N G +
Sbjct: 62 EQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVL 120
Query: 232 PKYM--NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289
LT L L L +N+ K+ A+ + + + L+L S+ + +F
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 290 SSVKHLYLQKNAIT--GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH--VSR 345
L L + + + +++ L L GN + +
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQ--NIRALNLSNNFLSGAIPESFSNLK 403
+ + Y G L+ ++ +LS + + + FS+
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 404 MTESLDLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNNLS 440
E L L+ N ++ I GL L N+S N L
Sbjct: 300 DLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 82/417 (19%), Positives = 151/417 (36%), Gaps = 69/417 (16%)
Query: 31 THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSG 90
H+ +D+S N ++ ++ + L L++L I N+ S L +L +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY- 88
Query: 91 SNMLQ-VKTETWHPTSQLKVLKLSDCHLH--VIPSFLLQHY-HLIFLDLSNNKVVGNFPI 146
N ++T ++ + L+VL L+ C+L V+ + L L L +N + P
Sbjct: 89 -NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 147 CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
N +++ LD+ N + + + + L ++
Sbjct: 148 SFFLN------------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS------ 189
Query: 207 QPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDA-NILVQLSQ 265
+ L D++ + T + L L N F M + ++
Sbjct: 190 ---------ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325
++SL L S S ++ SSF ++ K DN F + S +
Sbjct: 241 IQSLIL------SNSYNMGSSFGHTNFKDP---------DNFTFKGLE-----ASGVKTC 280
Query: 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRAL 384
L + + + + +++L+ L L+ NE++ +I L ++ L
Sbjct: 281 DLSKSKIF-ALLKSVFS-------HFTDLEQ---LTLAQNEIN-KIDDNAFWGLTHLLKL 328
Query: 385 NLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYNNLS 440
NLS NFL F NL E LDLS+N + + Q GL L + N L
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 20/254 (7%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
DLS N+ + EL + S L + I + L+ L L LD N F
Sbjct: 36 DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNAIT--GDNKF 308
+ L+ L+ L L + +L G+++S L+S++ L L+ N I F
Sbjct: 95 --ETGAFNGLANLEVLTL---TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 309 FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368
F + HVL L N ++ I E + H L + D++ L
Sbjct: 150 F-------LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428
E + +I L+LS N ++ + F + + S ++ NF
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 429 LSNFNVSYNNLSGP 442
N ++ L
Sbjct: 262 KDPDNFTFKGLEAS 275
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 59/278 (21%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L ++ D++ T + LD+S N + + + +
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
++ N + + T S +K LS + + +
Sbjct: 246 LS-----------NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294
Query: 125 LQHY-HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
H+ L L L+ N+ + K+ N F G
Sbjct: 295 FSHFTDLEQLTLAQNE------------------------INKI-----DDNAFWG---- 321
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLH 241
+ + +L LS+N + + L++ DLS N+ + L +L
Sbjct: 322 -LTHLLKLN---LSQNFLG-SIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLK 374
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
L LD N D +L SL+ I + N
Sbjct: 375 ELALDTNQLKSVPDGI-----FDRLTSLQKIWLHTNPW 407
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-19
Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 56/304 (18%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NLKNL L L +N P L L+ L +S NQL L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL-RVHENE 132
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQ---VKTETWHPTSQLKVLKLSDCHLHVIP 121
I + + +++ V+ + +N L+ ++ + +L ++++D ++ IP
Sbjct: 133 IT---KVRKSVFNGLNQMIVVELG--TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
L L L L NK + K+ +G
Sbjct: 188 QGLPP--SLTELHLDGNK------------------------ITKV-----DAASLKG-- 214
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLTHL 240
+ L LS N+ S + ++ L L+NN P + + ++
Sbjct: 215 ------LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYI 265
Query: 241 HWLYLDNNHFSG-KMDDANILVQLSQLKSLELIDIFENSLSGSLVSS---FNLSSVKHLY 296
+YL NN+ S +D ++ S + +F N + + + +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 297 LQKN 300
L
Sbjct: 326 LGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 65/384 (16%), Positives = 131/384 (34%), Gaps = 86/384 (22%)
Query: 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGS 91
HL+V+ S+ L KVP L LD N I N L L++ +
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLD-LQNNKITEIKDGDFKNLKNLHTLILI-NN 86
Query: 92 NMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNN 151
+ ++ + P +L+ L LS L +P + + L L + N++
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEIT---------- 134
Query: 152 FAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVS 211
K+ +++ L ++I +++ N L + F G
Sbjct: 135 ---KVRKSVFNGLNQMIVVELGTN--------------PLKSSGIENGAFQG-------- 169
Query: 212 GCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271
L +++ N P+ + L L+LD N + + L L +L
Sbjct: 170 -MKKLSYIRIADTNI--TTIPQGL-PPSLTELHLDGNKITKVDAAS-----LKGLNNLAK 220
Query: 272 IDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGN 330
+ + NS+S S N ++ L+L N + ++P + + + V+ L N
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNN 273
Query: 331 SLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNF 390
++ N+ C + +G+ L SN ++ +
Sbjct: 274 NISAIGSNDFCPPGYN-----TKKASYSGVSLFSN--------------PVQYWEIQ--- 311
Query: 391 LSGAIPESFSNLKMTESLDLSHNR 414
P +F + + ++ L + +
Sbjct: 312 -----PSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 37/250 (14%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLTHLHWLYLDNNHFSGK 253
S ++P+ + LDL NN +I NL +LH L L NN S
Sbjct: 37 QCSDLGLE-KVPKDLPPDTALLDL----QNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP 313
A + L LE + + +N L + +++ L + +N IT ++
Sbjct: 92 SPGA-----FAPLVKLERLYLSKNQLK--ELPEKMPKTLQELRVHENEIT-------KVR 137
Query: 314 YQI-NELSNLHVLLLRGNSLQ-GHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
+ N L+ + V+ L N L+ I N F +K ++ + ++ ++ I
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGA---------F-QGMKKLSYIRIADTNIT-TI 186
Query: 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNFLS 430
P+ G ++ L+L N ++ S L L LS N +S + L L
Sbjct: 187 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR 243
Query: 431 NFNVSYNNLS 440
+++ N L
Sbjct: 244 ELHLNNNKLV 253
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 54/267 (20%), Positives = 91/267 (34%), Gaps = 39/267 (14%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
DL N + E+ L L NN +I P + L L LYL N
Sbjct: 58 DLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK-- 113
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
+ K+L+ + + EN ++ S F L+ + + L N + I
Sbjct: 114 ------ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GI 162
Query: 313 PYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLH-----------RFYSNLKYMAGL 360
+ L + + ++ IP L LH L +A L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 361 DLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420
LS N +S + ++R L+L+NN L +P ++ K + + L +N +S I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG 279
Query: 421 PQ-------LTGLNFLSNFNVSYNNLS 440
T S ++ N +
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 61/267 (22%), Positives = 100/267 (37%), Gaps = 46/267 (17%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
+R S E+PQ I S L+L N I + +L HL L L N
Sbjct: 60 VCTRRGLS-EVPQGIPSNTRYLNL----MENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
A + L SL +++F+N L+ +F LS ++ L+L+ N I I
Sbjct: 115 EVGA-----FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SI 162
Query: 313 PYQI-NELSNLHVL-LLRGNSLQGHIP-----------------NELCHVSRFLHRFYSN 353
P N + +L L L L+ +I + +
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLTP--LVG 219
Query: 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413
L+ L++S N P L +++ L + N+ +S +F L L+L+HN
Sbjct: 220 LEE---LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 414 RLSGHIPPQ-LTGLNFLSNFNVSYNNL 439
LS +P T L +L ++ +N
Sbjct: 277 NLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 55/329 (16%), Positives = 98/329 (29%), Gaps = 83/329 (25%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
++ + +PQ + ++ + L++ N + T +L LE L N
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQ-LGRNS 110
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
I + + + L L + N L + + + S+L+ L L + + IPS+
Sbjct: 111 IRQIEVGAFNGLASLNTLELF--DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168
Query: 127 HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
+ L+ L
Sbjct: 169 R------------------------------------VPSLMRL---------------- 176
Query: 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246
DL + + G L +L N + P L L L +
Sbjct: 177 --------DLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMS 226
Query: 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGD 305
NHF LS LK L + + +S ++F L+S+ L L N ++
Sbjct: 227 GNHFP--EIRPGSFHGLSSLKKLWV---MNSQVSLIERNAFDGLASLVELNLAHNNLS-- 279
Query: 306 NKFFGRIPYQI-NELSNLHVLLLRGNSLQ 333
+P+ + L L L L N
Sbjct: 280 -----SLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 41/222 (18%), Positives = 73/222 (32%), Gaps = 16/222 (7%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+L +L L L N+ N L L L++ +N L+ L+ L L
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW-LR 155
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
N +I + L L + + + + LK L L C++ +P+
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
L L++S N ++ L L L + + +
Sbjct: 216 PLV-GLEELEMSGNHFP-------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
+ L +L+ NN S LP + + L L +N +
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 24/151 (15%)
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349
+ + + ++ +P I SN L L N++Q I +
Sbjct: 54 NQFSKVVCTRRGLS-------EVPQGIP--SNTRYLNLMENNIQ-MIQADT--------- 94
Query: 350 FYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
+ +L ++ L L N + +I L ++ L L +N+L+ +F L L
Sbjct: 95 -FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152
Query: 409 DLSHNRLSGHIPPQ-LTGLNFLSNFNVSYNN 438
L +N + IP + L ++
Sbjct: 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 45/264 (17%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
+ + +P I S L+L +N + + LT L L L +N S K
Sbjct: 13 RCNSKGLT-SVPTGIPSSATRLEL----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
+ + LK L+L N + ++ S+F L ++HL Q + + ++
Sbjct: 68 GCCSQSDFGTTSLKYLDL---SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-------QM 116
Query: 313 PYQ--INELSNLHVLLLRGNSLQGHIPNELC---------------HVSRFLHRFYSNLK 355
L NL L + + N + FL ++ L+
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 356 YMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+ LDLS +L ++ L +++ LN+S+N + L + LD S N
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 415 LS-------GHIPPQLTGLNFLSN 431
+ H P L LN N
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 58/327 (17%), Positives = 105/327 (32%), Gaps = 80/327 (24%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
E+ +S +P + + L++ +N+L LT L L
Sbjct: 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLS--------- 58
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
+S N L + +++ T+ LK L LS + + S L L
Sbjct: 59 LSSNGL---------------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
LD ++ + + + F L+ LIYLD
Sbjct: 104 EHLDFQHSNLKQ---MSEFSVFLS---------LRNLIYLD------------------- 132
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHLHWLYLDNNH 249
+S + I +G +L++ ++ N+F P L +L +L L
Sbjct: 133 -----ISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 250 FSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKF 308
A + L SL+++++ N+ + L+S++ L N I
Sbjct: 187 LEQLSPTA-----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM----- 236
Query: 309 FGRIPYQI--NELSNLHVLLLRGNSLQ 333
Q + S+L L L N
Sbjct: 237 --TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 27/252 (10%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK--VPSTLTNLTSLEYLDRFSI 65
+ L+L SN + + LT L L +S+N LS K + TSL+YLD S
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD-LSF 87
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVIPSF 123
N T+S ++ +LE L + L+ + + L L +S H V +
Sbjct: 88 NGVITMS-SNFLGLEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 124 LLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ L L ++ N NF + F L+ L +LD+ + E P
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFL---PDIFTE---------LRNLTFLDLSQCQLEQLSP 192
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK---YMNLTH 239
+ + L + ++S NNF L +L + D S N+ K +
Sbjct: 193 TAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSS 249
Query: 240 LHWLYLDNNHFS 251
L +L L N F+
Sbjct: 250 LAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS-GH 418
+ +S L+ +P I + L L +N L F L L LS N LS
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 419 IPPQ-LTGLNFLSNFNVSYNNLS 440
Q G L ++S+N +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI 91
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 5e-18
Identities = 55/249 (22%), Positives = 86/249 (34%), Gaps = 34/249 (13%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
DL N+ S EL + G L L NN +I K + L L LY+ NH
Sbjct: 60 DLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLV-- 115
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
+ + SL + I +N + F L ++ + + N +
Sbjct: 116 ------EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-----F 164
Query: 313 PYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372
+ L+ L + L IP +L L L L N++ I
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDL----------PETLNE---LHLDHNKIQ-AIE 209
Query: 373 REI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSN 431
E + + L L +N + S S L L L +N+LS +P L L L
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268
Query: 432 FNVSYNNLS 440
+ NN++
Sbjct: 269 VYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%)
Query: 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165
L+V++ SD L +P + LDL NN + ++F G LQ
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPD--TTLLDLQNN----DISELRKDDFKG---------LQ 78
Query: 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN 225
L L + N + +++L +S+N+ E+P + S V L + +N
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRI---HDNR 134
Query: 226 FFGQIFPKYM--NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
+ PK + L +++ + + N + L L + I E L+G
Sbjct: 135 I--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK----LNYLRISEAKLTG-- 186
Query: 284 VSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCH 342
+ ++ L+L N I I + S L+ L L N ++ I N
Sbjct: 187 IPKDLPETLNELHLDHNKIQ-------AIELEDLLRYSKLYRLGLGHNQIR-MIENGSL- 237
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402
S L + L L +N+LS +P + L+ ++ + L N ++ F +
Sbjct: 238 ---------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 403 KMT------ESLDLSHNRLS-GHIPP 421
+ L +N + + P
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQP 313
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 52/302 (17%), Positives = 97/302 (32%), Gaps = 33/302 (10%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
+ LDL +N+ L HL L + NN++S + L L+ L S N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY-ISKN 112
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLH--VIPSF 123
I N ++ L L I N ++ V + + +++ L
Sbjct: 113 HLVEIPPNLPSS---LVELRIH--DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167
Query: 124 LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
L +L +S K+ +P+++ + L L + N +
Sbjct: 168 AFDGLKLNYLRISEAKLT-------------GIPKDL---PETLNELHLDHNKIQAIELE 211
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM-NLTHLHW 242
+ +LY L N + +S L L NN P + +L L
Sbjct: 212 DLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQV 268
Query: 243 LYLDNNHFSG-KMDDANILVQLSQLKSLELIDIFENSLSGSLVSS---FNLSSVKHLYLQ 298
+YL N+ + ++D + + I +F N + V ++ +
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328
Query: 299 KN 300
Sbjct: 329 NY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 67/386 (17%), Positives = 132/386 (34%), Gaps = 91/386 (23%)
Query: 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGS 91
HL+V+ S+ L VP ++ LD N + + L L++ +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLD-LQNNDISELRKDDFKGLQHLYALVLVN-- 87
Query: 92 NMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNN 150
N + + + + P +L+ L +S HL IP L L+ L + +N++
Sbjct: 88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIR--------- 136
Query: 151 NFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIV 210
K+P+ + L+ + ++M N L F G
Sbjct: 137 ----KVPKGVFSGLRNMNCIEMGGN--------------PLENSGFEPGAFDG------- 171
Query: 211 SGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLE 270
+ L+ +S PK + L+ L+LD+N + L + L
Sbjct: 172 ---LKLNYLRISEAKL--TGIPKDL-PETLNELHLDHNKIQAIELED-----LLRYSKLY 220
Query: 271 LIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRG 329
+ + N + S L +++ L+L N ++ R+P + +L L V+ L
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHT 273
Query: 330 NSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQLQNIRALNLSN 388
N++ N+ C V + Y G+ L +N + E+
Sbjct: 274 NNITKVGVNDFCPVGFGV-----KRAYYNGISLFNNPVPYWEVQ---------------- 312
Query: 389 NFLSGAIPESFSNLKMTESLDLSHNR 414
P +F + ++ + +
Sbjct: 313 -------PATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
+ S L +P+EI + L+L NN +S + F L+ +L L +N++S I
Sbjct: 38 VQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KI 93
Query: 420 PPQ-LTGLNFLSNFNVSYNNLS 440
+ + L L +S N+L
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLV 115
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
LDL +N++S + LQ++ AL L NN +S ++FS L+ + L +S N L I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 420 PPQLTGLNFLSNFNVSYNNLS 440
PP L + L + N +
Sbjct: 118 PPNL--PSSLVELRIHDNRIR 136
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPST-------LTNLTSL 57
L L EL L +N +P L +L L+V+ + N ++ KV
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296
Query: 58 EYLD 61
+
Sbjct: 297 NGIS 300
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 2e-17
Identities = 49/312 (15%), Positives = 103/312 (33%), Gaps = 58/312 (18%)
Query: 156 LPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVA 215
LP N L + + + + D + + ++ + +RN L + +++
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYA-DYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--- 60
Query: 216 LDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIF 275
L+ N P + + L + N ++ + L+ L+ D
Sbjct: 61 FSELQLNRLNL--SSLPDNL-PPQITVLEITQNALI------SLPELPASLEYLDACDNR 111
Query: 276 ENSLSGSLVS------SFN--------LSSVKHLYLQKNAITGDNKFFGRIPYQINELSN 321
++L S N + ++++ N +T +P ++
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-------MLP---ELPTS 161
Query: 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381
L VL +R N L +P +L+ LD+S+N L +P + +
Sbjct: 162 LEVLSVRNNQLT-FLPELP-----------ESLEA---LDVSTNLLE-SLPAVPVRNHHS 205
Query: 382 R----ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
N ++ IPE+ +L T ++ L N LS I L+ +++
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264
Query: 438 NLSGPTPDKEQF 449
S +
Sbjct: 265 YFSMSDGQQNTL 276
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-16
Identities = 56/341 (16%), Positives = 102/341 (29%), Gaps = 54/341 (15%)
Query: 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164
LS + S Y + + G + N L ++
Sbjct: 6 PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE----NRNEAVSLLKE---CLI 58
Query: 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
+ L + + +P ++ ++ + ++++N LP+ S L+ D +N
Sbjct: 59 NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS----LEYLDACDN 110
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL-SQLKSLELIDIFENSLSGSL 283
P+ L L +DNN L L LE I+ N L+ L
Sbjct: 111 RL--STLPE--LPASLKHLDVDNNQ----------LTMLPELPALLEYINADNNQLT-ML 155
Query: 284 VSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343
+S++ L ++ N +T +P +L L + N L+ +P
Sbjct: 156 PEL--PTSLEVLSVRNNQLT-------FLP---ELPESLEALDVSTNLLE-SLPAVPVRN 202
Query: 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
+ + N ++ IP I L + L +N LS I ES S
Sbjct: 203 H-------HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ- 253
Query: 404 MTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
T D R+ + +
Sbjct: 254 -TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 46/256 (17%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
L C + EL L+ N +P L + VL+I+ N L +P +L L+
Sbjct: 53 LKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDAC 108
Query: 61 DRFSINFQGTISINSLANH-SKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
D N +++L + L+ L + +N L + E + L+ + + L +
Sbjct: 109 D----N-----RLSTLPELPASLKHLDVD--NNQLTMLPELP---ALLEYINADNNQLTM 154
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+P L L + NN++ LP + + L LD+ N+ E
Sbjct: 155 LPELPT---SLEVLSVRNNQL-------------TFLPE----LPESLEALDVSTNLLE- 193
Query: 180 DIPYSIGEMKEL----YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235
+P N + +P+ I+S L +N +I
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLS 251
Query: 236 NLTHLHWLYLDNNHFS 251
T + +FS
Sbjct: 252 QQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 46/255 (18%), Positives = 80/255 (31%), Gaps = 54/255 (21%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+ + N + +CL + L ++ LS +P L + L+
Sbjct: 35 KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQITVLE--- 86
Query: 65 INFQGTISINSL----ANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
I+ N+L + LE L N L E + LK L + + L ++
Sbjct: 87 ------ITQNALISLPELPASLEYLDAC--DNRLSTLPELP---ASLKHLDVDNNQLTML 135
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGD 180
P L +++ NN++ LP L L + N
Sbjct: 136 PELPAL---LEYINADNNQLT-------------MLPEL----PTSLEVLSVRNNQLT-F 174
Query: 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGC---VALDLFDLSNNNFFGQIFPKYM-N 236
+P ++ L D+S N LP V F N P+ + +
Sbjct: 175 LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI--THIPENILS 228
Query: 237 LTHLHWLYLDNNHFS 251
L + L++N S
Sbjct: 229 LDPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 2 GICNLKNL----FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL 57
+ N HIP+ + +L + + +N LS ++ +L+ T+
Sbjct: 198 VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
Query: 58 EYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQL 107
I F + + + + + N ++ WH
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 7e-17
Identities = 62/268 (23%), Positives = 102/268 (38%), Gaps = 48/268 (17%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
R N E+P I + L+L + N I + +L HL L L NH
Sbjct: 49 ICVRKNLR-EVPDGISTNTRLLNL----HENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
A + L +L +++F+N L+ +F LS +K L+L+ N I I
Sbjct: 104 EIGA-----FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------SI 151
Query: 313 PYQI-NELSNLHVL-LLRGNSLQGHIP-----------------NELCHVSRFLHRFYSN 353
P N + +L L L L +I L + +
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNL-----TP 205
Query: 354 LKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSH 412
L + LDLS N LS I L +++ L + + + +F NL+ ++L+H
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 413 NRLSGHIPPQ-LTGLNFLSNFNVSYNNL 439
N L+ +P T L+ L ++ +N
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 60/276 (21%), Positives = 104/276 (37%), Gaps = 32/276 (11%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
++ N +P ++ T+ ++L++ NQ+ ++ +L LE L S N
Sbjct: 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQ-LSRNH 99
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
TI I + + L L + N L + + S+LK L L + + IPS+
Sbjct: 100 IRTIEIGAFNGLANLNTLELF--DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Query: 127 H-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185
L LDL K + F G L L YL++ +IP ++
Sbjct: 158 RIPSLRRLDLGELKRLSYIS---EGAFEG---------LSNLRYLNLAMCNLR-EIP-NL 203
Query: 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY--MNLTHLHWL 243
+ +L DLS N+ S + G + L + + Q+ + NL L +
Sbjct: 204 TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEI 260
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
L +N+ + D + L LE I + N
Sbjct: 261 NLAHNNLTLLPHDL-----FTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 16/222 (7%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+L++L L LS N+ N L +L L++ +N+L+ L+ L+ L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW-LR 144
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
N +I + L L + + + + S L+ L L+ C+L IP+
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
L LDLS N +F G L L L M ++ + +
Sbjct: 205 PLI-KLDELDLSGNH----LSAIRPGSFQG---------LMHLQKLWMIQSQIQVIERNA 250
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
++ L +L+ NN + LP + + L+ L +N +
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 24/151 (15%)
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349
+ + + + +P I+ +N +L L N +Q N
Sbjct: 43 NQFSKVICVRKNLR-------EVPDGIS--TNTRLLNLHENQIQIIKVNSF--------- 84
Query: 350 FYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
+L+++ L LS N + I L N+ L L +N L+ +F L + L
Sbjct: 85 --KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 409 DLSHNRLSGHIPPQL-TGLNFLSNFNVSYNN 438
L +N + IP + L ++
Sbjct: 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 78/467 (16%), Positives = 146/467 (31%), Gaps = 72/467 (15%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L L LD +++ + + LT L L ++N ++ S TNLT L
Sbjct: 40 QLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTLDLSQNTNLTYLA----CD 93
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
N + + L +KL L +N L + +P L L + L I +
Sbjct: 94 SNKLTNLDVTPL---TKLTYLNCD--TNKLTKLDVSQNP--LLTYLNCARNTLTEID--V 144
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNN-----FAGKLPRNMGIV-LQKLIYLDMPKNIFE 178
+ L LD NK + + + + + + L L+ N
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT 204
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT 238
+ + + +L D S N + E+ V+ L FD S N L+
Sbjct: 205 -KLD--LNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL---TELDVSTLS 254
Query: 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQ 298
L L+ + L+ L L + + + + L Q
Sbjct: 255 KLTTLHCIQTDLLE--------IDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQ 305
Query: 299 KNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMA 358
IT + +++ L L L L + S+ +
Sbjct: 306 AAGITELD---------LSQNPKLVYLYLNNTELT-ELD-------------VSHNTKLK 342
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES-----LDLSHN 413
L + + + +G++ + + E+ +N +T + LD N
Sbjct: 343 SLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400
Query: 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGN 460
++ I P G+ + +++ NLS P T + + G
Sbjct: 401 PMN--IEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGT 445
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 67/434 (15%), Positives = 129/434 (29%), Gaps = 77/434 (17%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
N ++ + L L LD N+ ++ + + LT L L + N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLI-CTSN 74
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
T+ ++ N L L SN L P ++L L L +
Sbjct: 75 NITTLDLSQNTN---LTYLACD--SNKL--TNLDVTPLTKLTYLNCDTNKLTKLDVSQNP 127
Query: 127 HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
L +L+ + N + + N L LD N + +
Sbjct: 128 --LLTYLNCARNTLT-EIDVSHNTQ---------------LTELDCHLNKKITKLD--VT 167
Query: 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246
+L D S N + EL VS L+ + NN L +L
Sbjct: 168 PQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLDLN---QNIQLTFLDCS 220
Query: 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDN 306
+N + + ++ L L D N L + + LS + L+ + + +
Sbjct: 221 SNKLTE--------IDVTPLTQLTYFDCSVNPL--TELDVSTLSKLTTLHCIQTDLLEID 270
Query: 307 KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE 366
+ + L G + ++ + LD +
Sbjct: 271 ---------LTHNTQLIYFQAEGCRKIKELD-------------VTHNTQLYLLDCQAAG 308
Query: 367 LSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426
++ E+ + Q + L L+N L+ + S+ +SL + + + +
Sbjct: 309 IT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKI 360
Query: 427 NFLSNFNVSYNNLS 440
L+N +
Sbjct: 361 PALNNNFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 52/289 (17%), Positives = 87/289 (30%), Gaps = 36/289 (12%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ + + L ELD N + + T L LD S N+++ S L L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRL-NC 198
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
D +I + +N L L S SN L P +QL S L +
Sbjct: 199 DTNNIT---KLDLNQNIQ---LTFLDCS--SNKL--TEIDVTPLTQLTYFDCSVNPLTEL 248
Query: 121 PSFLLQHYHLIFLDLSNNKV----VGNFPI-----CSNNNFAGKLPRNMGIVLQKLIYLD 171
L L L + + + K+ +L LD
Sbjct: 249 DVSTLS--KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLD 303
Query: 172 MPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231
++ + + +L L+ + EL VS L N + Q F
Sbjct: 304 CQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHI--QDF 354
Query: 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
+ L+ + + L+ S +L+D F N ++
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 9e-16
Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 36/251 (14%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
+ +P I + + L + N + + +L L+L +N +
Sbjct: 17 SCPQQGLQ-AVPVGIPAASQRIFL----HGNRISHVPAASFRACRNLTILWLHSNVLA-- 69
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSL-VSSF-NLSSVKHLYLQKNAITGDNKFFGR 311
DA L+ L+ L+L D N+ S+ ++F L + L+L + +
Sbjct: 70 RIDAAAFTGLALLEQLDLSD---NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-------E 119
Query: 312 IPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370
+ + L+ L L L+ N+LQ +P++ + +L + L L N +S
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDT----------FRDLGNLTHLFLHGNRIS-S 167
Query: 371 IPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNF 428
+P L ++ L L N ++ P +F +L +L L N LS +P + L L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA 226
Query: 429 LSNFNVSYNNL 439
L ++ N
Sbjct: 227 LQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 8e-14
Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 52/279 (18%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
C + + +P + + + + N++S ++ +L L
Sbjct: 8 CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW-L 63
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
N I + + LE L +S + + V T+H +L L L C L +
Sbjct: 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 124 LLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L + L +L L +N + +P + F
Sbjct: 124 LFRGLAALQYLYLQDNALQ-----------------------------ALPDDTFRD--- 151
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHL 240
+G + L L N S +P+ G +LD L N + +L L
Sbjct: 152 --LGNLTHL---FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRL 203
Query: 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
LYL N+ S +A L+ L++L+ + + +N
Sbjct: 204 MTLYLFANNLSALPTEA-----LAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
+ L N +S +N+ L L +N L+ +F+ L + E LDLS N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 420 PPQ-LTGLNFLSNFNVSYNNLS 440
P GL L ++ L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ 118
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
L +P I + + L N +S SF + L L N L+ I
Sbjct: 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71
Query: 420 PPQ-LTGLNFLSNFNVSYNN 438
TGL L ++S N
Sbjct: 72 DAAAFTGLALLEQLDLSDNA 91
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 44/276 (15%), Positives = 95/276 (34%), Gaps = 37/276 (13%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
NL L L+SN ++L L+ LD+S N LS S L+SL +L+
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
++ + ++ +KL++L + + +++ + + + L+ L++ L
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
Query: 125 LQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183
L+ ++ L L + + L V + L++
Sbjct: 194 LKSIQNVSHLILHMKQHI-------------LLLEIFVDVTSSVECLELRDT-------- 232
Query: 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243
++ + +LS + + +++ + F Q+ ++ L L
Sbjct: 233 ---DLDTFHFSELSTGETNS------LIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
N D +L SL+ I + N
Sbjct: 283 EFSRNQLKSVPDGI-----FDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 49/338 (14%), Positives = 104/338 (30%), Gaps = 59/338 (17%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
+ SS + IP +K LD+SNN+++ S L +L+ L
Sbjct: 28 LSCDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALV-- 82
Query: 64 SINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF 123
++ N + I ++ L+ L LS +L + S
Sbjct: 83 -------LTSNGINT--------IEED---------SFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 124 LLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYL-DMPKNIFEGDI 181
+ L FL+L N + + F+ L + + + + + + F G
Sbjct: 119 WFKPLSSLTFLNLLGNPYKT---LGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAG-- 172
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTH 239
+ ++EL + ++ + + L + + +
Sbjct: 173 ---LTFLEELE---IDASDLQ-SYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSS 223
Query: 240 LHWLYLDNNHFSGKMD---DANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLY 296
+ L L + L + + + I + SL + +S + L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
Query: 297 LQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQ 333
+N + +P I + L++L + L N
Sbjct: 284 FSRNQLKS-------VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 28/273 (10%)
Query: 148 SNNNFAGKLPRNMGIVLQKLIYLDMPKN---IFEGDIPYSIGEMKELYMQDLSRNNFSGE 204
SNN + + L L + N E D S+G ++ L LS N S
Sbjct: 60 SNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD---LSYNYLS-N 114
Query: 205 LPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHWLYLDNNHFSGKMDDANILVQ 262
L +L +L N + + + +LT L L + N K+
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAG 172
Query: 263 LSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELS 320
L+ L+ LE+ + L S ++ +V HL L + + S
Sbjct: 173 LTFLEELEI---DASDLQSYEPKSLKSIQNVSHLILHMKQHI-------LLLEIFVDVTS 222
Query: 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQN 380
++ L LR L +EL + + ++ L ++ + + Q+
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN---VKITDESLF-QVMKLLNQISG 278
Query: 381 IRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413
+ L S N L F L + + L N
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 39/258 (15%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
S + + +P + +LDL +NN I +L L L +N +
Sbjct: 37 KGSSGSLN-SIPSGLTEAVKSLDL----SNNRITYISNSDLQRCVNLQALVLTSNGIN-- 89
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT--GDNKFFG 310
+ + L L+ L+L N LS S F LSS+ L L N G+ F
Sbjct: 90 TIEEDSFSSLGSLEHLDL---SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF- 145
Query: 311 RIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370
+ L+ L +L + I + F + L+ L++ +++L
Sbjct: 146 ------SHLTKLQILRVGNMDTFTKIQRKD-----FAGL--TFLEE---LEIDASDLQSY 189
Query: 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF-- 428
P+ + +QN+ L L + E L+L L +L+
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249
Query: 429 ------LSNFNVSYNNLS 440
N ++ +L
Sbjct: 250 LIKKFTFRNVKITDESLF 267
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 25/251 (9%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHWLYLDNNHFSG 252
L+ N + + + S +L+ DLS N L+ L +L L N +
Sbjct: 82 VLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKT 138
Query: 253 KMDDANILVQLSQLKSLELIDIFENSLSGSL-VSSF-NLSSVKHLYLQKNAITGDNKFFG 310
+ + S L L+++ + + F L+ ++ L + + +
Sbjct: 139 LGETS----LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------- 187
Query: 311 RIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369
+ + N+ L+L + V+ + L+ +ELS
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE--LRDTDLDTFHFSELST 244
Query: 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLNF 428
+ + R + +++ L + + + + L+ S N+L +P L
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302
Query: 429 LSNFNVSYNNL 439
L + N
Sbjct: 303 LQKIWLHTNPW 313
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 79/479 (16%), Positives = 148/479 (30%), Gaps = 115/479 (24%)
Query: 7 KNLFELDLSSNNF-EGHIPQCLNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLD 61
++ LD+ + + L L +V+ + + L+ + S L +L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL---- 117
N G + ++ + + P+ +++ L L +C L
Sbjct: 63 -LRSNELGDVGVHCVLQGLQ--------------------TPSCKIQKLSLQNCCLTGAG 101
Query: 118 -HVIPSFLLQHYHLIFLDLSNNKV--VGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK 174
V+ S L L L LS+N + G +C + + L+KL
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC-------EGLLDPQCRLEKL------- 147
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVS---GCVALDLFDLSNNNF----- 226
L + S +P+ S +SNN+
Sbjct: 148 --------------------QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187
Query: 227 --FGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ-LSQLKSLELIDIFENSLSGSL 283
Q + L L L++ + D+ L ++ SL + + N L
Sbjct: 188 RVLCQGLKD--SPCQLEALKLESCGVTS--DNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 284 VSSF------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337
++ S ++ L++ + IT K G + + +L L L GN L
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 338 NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL----QNIRALNLSNN---- 389
LC L+ L + S + + + + L +SNN
Sbjct: 302 RLLCETLLEPG---CQLES---LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Query: 390 ----FLSGAIPESFSNLKMTESLDLSHNRLS----GHIPPQLTGLNFLSNFNVSYNNLS 440
L + + S L L L+ +S + L + L ++S N L
Sbjct: 356 AGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 71/459 (15%), Positives = 135/459 (29%), Gaps = 93/459 (20%)
Query: 6 LKNLFELDLSSNNF--EG--HIPQCLNNLTHLKVLDISNNQLSGKVPSTL--------TN 53
L+ + L I L L L++ +N+L +
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86
Query: 54 LTSLEYLDRFSINFQGTISINS-LANHSKLEVLLIS----SGSNMLQVKTETWHPTSQLK 108
+ L L + G ++S L L+ L +S + + + P +L+
Sbjct: 87 IQKL-SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 109 VLKLSDCHL-----HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163
L+L C L + S L L +SNN + + L +
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGV---RVLCQGLKDSPC-- 199
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEM-------KELYMQDLSRNNFSGELPQPIVSGCVAL 216
+L L + D + + +EL L N G L
Sbjct: 200 --QLEALKLESCGVTSDNCRDLCGIVASKASLREL---ALGSNKLGDV-------GMAEL 247
Query: 217 DLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ-LSQLKSLELIDIF 275
L + + L L++ + L + L +SL+ + +
Sbjct: 248 CPGLLHPS-------------SRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLA 292
Query: 276 ENSLSGSLVSSF------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRG 329
N L ++ L+++ + T + + L L +
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFT--AACCSHFSSVLAQNRFLLELQISN 350
Query: 330 NSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL----QNIRALN 385
N L+ + + + L + S L+ L L+ ++S + ++R L+
Sbjct: 351 NRLED---AGVRELCQGLGQPGSVLRV---LWLADCDVSDSSCSSLAATLLANHSLRELD 404
Query: 386 LSNNF--------LSGAIPESFSNLKMTESLDLSHNRLS 416
LSNN L ++ + L E L L S
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLL---EQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 35/153 (22%), Positives = 53/153 (34%), Gaps = 35/153 (22%)
Query: 2 GICNLKNLFELDLSSNNFEGH-----IPQCLNNLTHLKVLDISNNQLSGK----VPSTLT 52
+ + +L EL L SN P L+ + L+ L I ++ K + L
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281
Query: 53 NLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKL 112
SL+ L + N G L E LL P QL+ L +
Sbjct: 282 AKESLKELS-LAGNELGDEGARLLC-----ETLL---------------EPGCQLESLWV 320
Query: 113 SDCHL-----HVIPSFLLQHYHLIFLDLSNNKV 140
C S L Q+ L+ L +SNN++
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 52/264 (19%), Positives = 88/264 (33%), Gaps = 26/264 (9%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ IP L + L +L + LE ++ +
Sbjct: 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYH- 129
I + +N KL + I +N+L + E + L+ L +S+ + +P H
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 130 LIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189
+ LD+ +N + N+F G + + + L + KN + +I S
Sbjct: 130 KVLLDIQDNINIHTIE---RNSFVG--------LSFESVILWLNKNGIQ-EIHNSAFNGT 177
Query: 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHWLYLDN 247
+L +LS NN ELP + G + D+S P Y NL L N
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARSTYN 235
Query: 248 NHFSGKMDDANILVQLSQLKSLEL 271
L +L L L
Sbjct: 236 LK------KLPTLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 34/247 (13%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGK 253
+ + E+P + + L I + L + + N
Sbjct: 15 LCQESKVT-EIPSDLPRNAIELRF----VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI 312
++ A++ L +L + + N+L +F NL ++++L + I +
Sbjct: 70 IE-ADVFSNLPKLHEIRIEKA--NNLLYINPEAFQNLPNLQYLLISNTGIK-------HL 119
Query: 313 P-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
P +L ++ N I L L+ N + EI
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNS------FVGLSFESVI---LWLNKNGIQ-EI 169
Query: 372 PREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ----LTGL 426
Q NN L + F LD+S R+ +P L L
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228
Query: 427 NFLSNFN 433
S +N
Sbjct: 229 RARSTYN 235
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 32/225 (14%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHLHWLYLDNNHFSGK 253
++S+N+ + + S L + N I P+ NL +L +L + N
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-- 117
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSS-VKHLYLQKNAITGDNKFFGR 311
+ Q L++ D ++ +SF LS L+L KN I
Sbjct: 118 HLPDVHKIHSLQKVLLDIQD--NINIHTIERNSFVGLSFESVILWLNKNGIQ-------E 168
Query: 312 IPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370
I N + L N+L+ +PN++ + LD+S +
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDV----------FHGASGPVILDISRTRIH-S 216
Query: 371 IPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+P L+ +RA + N +P + L L++
Sbjct: 217 LPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQ-CLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
N L EL+LS NN +P + + +LDIS ++ L NL L
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231
Query: 61 DRFSINFQGTISINSLANHSKLEVLLIS 88
+++ + +L L ++
Sbjct: 232 STYNL-----KKLPTLEKLVALMEASLT 254
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
++++ EIP ++ +N L L +FS E +++S N + I
Sbjct: 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 420 PPQ-LTGLNFLSNFNVSYNN 438
+ L L + N
Sbjct: 71 EADVFSNLPKLHEIRIEKAN 90
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
GI N+ +L +++ + + P ++ L++L+ L I ++ L+ LTSL LD
Sbjct: 61 GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
S + + + K+ + +S N +LK L + +H
Sbjct: 119 -ISHSAHDDSILTKINTLPKVNSIDLS--YNGAITDIMPLKTLPELKSLNIQFDGVHDY- 174
Query: 122 SFLLQHYHLIFLDLSNNKV 140
+ L L + +
Sbjct: 175 RGIEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-11
Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 24/183 (13%)
Query: 258 NILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317
N+ + S K+ + ++S + ++ ++S+ ++ L +T D I
Sbjct: 14 NVNIPDSTFKAYLNGLLGQSSTAN--ITEAQMNSLTYITLANINVT-DLTG-------IE 63
Query: 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQ 377
N+ L + + P S L + L + +++ + +
Sbjct: 64 YAHNIKDLTINNIHATNYNP-------------ISGLSNLERLRIMGKDVTSDKIPNLSG 110
Query: 378 LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437
L ++ L++S++ +I + L S+DLS+N I P L L L + N+ ++
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169
Query: 438 NLS 440
+
Sbjct: 170 GVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 25/182 (13%), Positives = 65/182 (35%), Gaps = 28/182 (15%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295
+ L ++ L N + + L + +++ + I + + LS+++ L
Sbjct: 42 QMNSLTYITLANINVTD-------LTGIEYAHNIKDLTINNIHAT-NYNPISGLSNLERL 93
Query: 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
+ +T D ++ L++L +L + ++ I ++ + L
Sbjct: 94 RIMGKDVTSDK------IPNLSGLTSLTLLDISHSAHDDSILTKI-----------NTLP 136
Query: 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
+ +DLS N +I + L +++LN+ + + + L +
Sbjct: 137 KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193
Query: 416 SG 417
G
Sbjct: 194 GG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 6/136 (4%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+ +L + L++ N + ++K L I+N + + ++ L++LE L
Sbjct: 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLR-IM 96
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ I +L+ + L +L IS S + ++ + LS L
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155
Query: 125 LQHYHLIFLDLSNNKV 140
L L++ + V
Sbjct: 156 KTLPELKSLNIQFDGV 171
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 34/208 (16%)
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+ + + ++ + +M L L+ N + + + ++N
Sbjct: 22 FKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTINN 75
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
+ P L++L L + + + + LS L SL L+DI ++ S+
Sbjct: 76 IHA-TNYNP-ISGLSNLERLRIMGKDVTS-----DKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 284 VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342
++ L V + L N D + L L L ++ + + +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP-------LKTLPELKSLNIQFDGVHDYRG----- 176
Query: 343 VSRFLHRFYSNLKYMAGLDLSSNELSGE 370
+ + L S + G+
Sbjct: 177 --------IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
+ + + + L++ ++ I NI+ L ++N + S L E L +
Sbjct: 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96
Query: 412 HNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK 446
++ P L+GL L+ ++S++ K
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 29/244 (11%), Positives = 75/244 (30%), Gaps = 55/244 (22%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ L ++ +IP + + + + + + +LT +
Sbjct: 5 QTGLKASQDNVNIP--DSTFKAYLNGLLGQSSTANITEAQMNSLTYIT------------ 50
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
++ ++ + + +E +K L +++ H + + +L
Sbjct: 51 LANINVTDLTGIEYA-------------------HNIKDLTINNIHATNY-NPISGLSNL 90
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
L + V + N +G L L LD+ + + I I + +
Sbjct: 91 ERLRIMGKDVTSDKI----PNLSG---------LTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI--FPKYMNLTHLHWLYLDNN 248
+ DLS N ++ + L ++ + + + + L+ LY +
Sbjct: 138 VNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD----GVHDYRGIEDFPKLNQLYAFSQ 191
Query: 249 HFSG 252
G
Sbjct: 192 TIGG 195
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 52/224 (23%), Positives = 73/224 (32%), Gaps = 28/224 (12%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK--YMNLTHLHWLYLDNNHFSG 252
DLS N L L + DLS Q Y +L+HL L L N
Sbjct: 34 DLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ- 89
Query: 253 KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT---GDNKFF 309
LS L+ L ++ SL + +L ++K L + N I F
Sbjct: 90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369
L+NL L L N +Q I L + LDLS N ++
Sbjct: 147 N--------LTNLEHLDLSSNKIQ-SIYCTD------LRVLHQMPLLNLSLDLSLNPMN- 190
Query: 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413
I + ++ L L N L F L + + L N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 31 THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSG 90
K LD+S N L + + L+ LD Q TI + + S L L+++
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84
Query: 91 SNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICS 148
N +Q + + S L+ L + +L + +F + H L L++++N
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--------- 135
Query: 149 NNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208
+Q F + ++ L LS N +
Sbjct: 136 ---------------IQSFK----LPEYFSN-----LTNLEHLD---LSSNKIQ-SIYCT 167
Query: 209 IVSGCVALDLFDLS---NNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265
+ + L +LS + N I P L L LD N D +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI-----FDR 222
Query: 266 LKSLELIDIFEN 277
L SL+ I + N
Sbjct: 223 LTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+ L LDLS + +L+HL L ++ N + + L+SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQV--KTETWHPTSQLKVLKLSDCHLHVIPS 122
N ++ + + L+ L ++ N++Q E + + L+ L LS + I
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 123 FLLQH-----YHLIFLDLSNNK 139
L+ + LDLS N
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNP 188
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 288 NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRF 346
+ ++ L L + I I LS+L L+L GN +Q +
Sbjct: 50 SFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQ-SLALGA------ 95
Query: 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFL-SGAIPESFSNLKMT 405
+S L + L L+ IG L+ ++ LN+++N + S +PE FSNL
Sbjct: 96 ----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 406 ESLDLSHNRLSGHIPPQ----LTGLNFLS-NFNVSYNNLS 440
E LDLS N++ I L + L+ + ++S N ++
Sbjct: 152 EHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 320 SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQL 378
+ L L N L+ H+ + F + L+ LDLS E+ I L
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYS-----FFS--FPELQV---LDLSRCEIQ-TIEDGAYQSL 75
Query: 379 QNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG------HIPPQLTGLNFLSN 431
++ L L+ N + +FS L + L L+ L LN N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 40/277 (14%)
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+ I ++ K + E+ + + ++ + + L+
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNG 74
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
N I P NL +L WL+LD N L L LK L+ + + N +S +
Sbjct: 75 NKL-TDIKPLT-NLKNLGWLFLDENKIK-------DLSSLKDLKKLKSLSLEHNGIS-DI 124
Query: 284 VSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343
+L ++ LYL N IT I ++ L+ L L L N + I
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-------DIT-VLSRLTKLDTLSLEDNQIS-DIVP----- 170
Query: 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
+ L + L LS N +S ++ + L+N+ L L + SNL
Sbjct: 171 -------LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 404 MTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ ++ + L P ++ NV ++
Sbjct: 222 VPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 5e-11
Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 31/247 (12%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L + + N L + + +N+ + ++ + L +
Sbjct: 16 PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-----KSVQGIQYLPNVT 68
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+ +N I L N L L + N ++ + +LK L L + I
Sbjct: 69 KLFLNGNKLTDIKPLTNLKNLGWLFLD--ENKIK-DLSSLKDLKKLKSLSLEHNGISDI- 124
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
+ L+ L L L NNK I + L KL L + N DI
Sbjct: 125 NGLVHLPQLESLYLGNNK------ITDITVLSR---------LTKLDTLSLEDNQIS-DI 168
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ + +L LS+N+ S +L ++G LD+ +L + + NL +
Sbjct: 169 V-PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 242 WLYLDNN 248
+ +
Sbjct: 225 TVKNTDG 231
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 35/266 (13%)
Query: 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68
+ E S + P + ++ ++ T L S++ + N
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQII---ANNS 53
Query: 69 GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHY 128
S+ + + L ++ N L + L L L + + + S L
Sbjct: 54 DIKSVQGIQYLPNVTKLFLN--GNKLT-DIKPLTNLKNLGWLFLDENKIKDL-SSLKDLK 109
Query: 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
L L L +N I N L +L L + N DI + +
Sbjct: 110 KLKSLSLEHNG------ISDINGLVH---------LPQLESLYLGNNKIT-DIT-VLSRL 152
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
+L L N S ++G L LS N+ L +L L L +
Sbjct: 153 TKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ 207
Query: 249 HFSGKMDDANILVQLSQLKSLELIDI 274
K N L +++ D
Sbjct: 208 ECLNKPI--NHQSNLVVPNTVKNTDG 231
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 9e-08
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ +L L L L +N L+ LT L L + +NQ+ S + L L L
Sbjct: 126 GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTKLQ 178
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
++ + +LA L+VL + L +K +D L
Sbjct: 179 NLYLSKNHISDLRALAGLKNLDVLEL-FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237
Query: 122 S 122
Sbjct: 238 I 238
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ L L L LS N+ + L L +L VL++ + + K + +NL +
Sbjct: 170 PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLS 113
+ I+ ++ K V T +
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 27/158 (17%)
Query: 290 SSVKHLYLQKNAIT--GDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
S L L N ++ R L+NLH LLL N L I +E F
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTR-------LTNLHSLLLSHNHLN-FISSEA-----F- 84
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTE 406
NL+Y LDLSSN L + + LQ + L L NN + +F ++ +
Sbjct: 85 -VPVPNLRY---LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 407 SLDLSHNRLSGHIPPQ----LTGLNFLSNFNVSYNNLS 440
L LS N++S P + L L ++S N L
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 61/230 (26%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHWLYLDNNHFSG 252
S+ +PQ + S LDL ++N ++ ++ LT+LH L L +N
Sbjct: 24 SCSKQQLP-NVPQSLPSYTALLDL----SHNNLSRLRAEWTPTRLTNLHSLLLSHN---- 74
Query: 253 KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRI 312
L + + F + ++++L L N + +
Sbjct: 75 ------------HLNFIS-SEAFVP-----------VPNLRYLDLSSNHLH-------TL 103
Query: 313 PYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
+ ++L L VLLL N + + F ++ + L LS N++S
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIV-VVDRNA---------F-EDMAQLQKLYLSQNQIS-RF 151
Query: 372 PREI----GQLQNIRALNLSNNFLSGAIPESFSNLK--MTESLDLSHNRL 415
P E+ +L + L+LS+N L L + L L +N L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 11 ELDLSSNNFEGHIPQC-LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQG 69
LDLS NN + LT+L L +S+N L+ + +L YLD S N
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD-LSSNHLH 101
Query: 70 TISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHY 128
T+ ++ LEVLL+ +N + V + +QL+ L LS + P L++
Sbjct: 102 TLDEFLFSDLQALEVLLLY--NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 129 ----HLIFLDLSNNK 139
L+ LDLS+NK
Sbjct: 160 NKLPKLMLLDLSSNK 174
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 18/166 (10%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+ NL LDLSSN+ ++L L+VL + NN + + ++ L+ L S
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY-LS 144
Query: 65 INFQGTISINSLANHSKLEVL--LISSGSNMLQVKTETWHPTSQLKVLKLS--------D 114
N + + + +KL L L S + + ++ L D
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204
Query: 115 CHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPIC-SNNNFAGKLPRN 159
C L+ + S LS+ C + +
Sbjct: 205 CKLYQLFSHWQY------RQLSSVMDFQEDLYCMHSKKLHNIFSLD 244
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 28/179 (15%)
Query: 268 SLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLH 323
L+D+ N+LS L + + L+++ L L N + I + + NL
Sbjct: 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-------FISSEAFVPVPNLR 91
Query: 324 VLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIR 382
L L N L + L F L+ L L +N + + R + ++
Sbjct: 92 YLDLSSNHLH-TLDEFL-----FSD--LQALEV---LLLYNNHIV-VVDRNAFEDMAQLQ 139
Query: 383 ALNLSNNFLSGAIPESFSN---LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438
L LS N +S E + L LDLS N+L L L + +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 31 THLKVLDISNNQLS----GKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86
++ +LD+S+N LS P+ LTNL SL L +N IS + L L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSL-LLSHNHLN---FISSEAFVPVPNLRYLD 94
Query: 87 ISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNK 139
+S SN L + + L+VL L + H+ V+ + L L LS N+
Sbjct: 95 LS--SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 34/182 (18%)
Query: 133 LDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM--------PKNIFEGDIPYS 184
LDLS+N + + + L L L + F
Sbjct: 44 LDLSHNNLSR---LRAEWTPTR---------LTNLHSLLLSHNHLNFISSEAFVP----- 86
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHW 242
+ ++ L DLS N+ L + + S AL++ L NN+ + + ++ L
Sbjct: 87 VPNLRYL---DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQK 140
Query: 243 LYLDNNHFSGKMDDA-NILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
LYL N S + +L +L L+L L + + LYL N
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200
Query: 302 IT 303
+
Sbjct: 201 LE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 31/171 (18%), Positives = 48/171 (28%), Gaps = 42/171 (24%)
Query: 105 SQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163
+ L L LS HL+ I S +L +LDLS+N
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH------------------------ 99
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
L L + +F ++ L + L N+ + + L LS
Sbjct: 100 LHTL-----DEFLFSD--------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145
Query: 224 NNFF---GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271
N ++ L L L L +N + L L
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 33/248 (13%), Positives = 69/248 (27%), Gaps = 55/248 (22%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHLHWLYLDNNHFSGK 253
L + +P S + +S + Q+ NL+ + + + N
Sbjct: 37 KLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT----- 90
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP 313
L + D + L +K L + + P
Sbjct: 91 ----RNLTYIDP-------DALKE-----------LPLLKFLGIFNTGLK-------MFP 121
Query: 314 --YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371
++ +L + N IP F L L +N + +
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNA---------FQGLCNETLTLKLYNNGFT-SV 171
Query: 372 PREIGQLQNIRALNLS-NNFLSGAIPESFSNLK-MTESLDLSHNRLSGHIPP----QLTG 425
+ A+ L+ N +L+ ++F + LD+S ++ +P L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230
Query: 426 LNFLSNFN 433
L + +
Sbjct: 231 LIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 24/252 (9%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
C + ++ + + IP + L + L +NL ++ +
Sbjct: 6 PPCECHQEEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIY 61
Query: 62 RFSINFQ-GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
SI+ + +S N SK+ + I + N+ + + LK L + + L +
Sbjct: 62 -VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
Query: 121 P--SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE 178
P + + L++++N + + P N F G L + L + N F
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIP---VNAFQG-LCNE-------TLTLKLYNNGFT 169
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV-ALDLFDLSNNNFFGQIFPKYMNL 237
+ +L L++N + + + G L D+S + P L
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSKG-L 225
Query: 238 THLHWLYLDNNH 249
HL L N
Sbjct: 226 EHLKELIARNTW 237
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-10
Identities = 53/327 (16%), Positives = 98/327 (29%), Gaps = 19/327 (5%)
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYL-----DMPKNIFEG 179
YH L + V S + + + + + D E
Sbjct: 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEW 287
Query: 180 DIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH 239
P +++ DL + + +LPQ + +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347
Query: 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQK 299
L+ + L +L+ LE + + L + ++ L +K
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEK 402
Query: 300 NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV---SRFLHRFY--SNL 354
+ + P + L +L L NS+ ++ + + L L
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNR 414
+ LDLS N L +P + L+ + L S+N L + +NL + L L +NR
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519
Query: 415 LSGH-IPPQLTGLNFLSNFNVSYNNLS 440
L L L N+ N+L
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 4e-07
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ L + LDLS N +P L L L+VL S+N L V + NL L+ L
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514
Query: 62 RFSINFQGTISINSLANHSKLEVL 85
+ N L + ++ L
Sbjct: 515 ---------LCNNRLQQSAAIQPL 529
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 48/334 (14%), Positives = 101/334 (30%), Gaps = 27/334 (8%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + + S G L + L + G+ + L L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
Q T + + S+ E +L+ + + QL +LS V+ S
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLK---DRPECWCRDSATDEQLFRCELSVEKSTVLQS 366
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLD--------MPK 174
L L L+ N + + + L +D +
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426
Query: 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234
+ F + E ++ + L+ + + L + + + DLS+N + P
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPAL 482
Query: 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG--SLVSSFNLSSV 292
L L L +N + ++ L L+ + + N L ++ + +
Sbjct: 483 AALRCLEVLQASDNALE-------NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLL 326
L LQ N++ + R+ L ++ +L
Sbjct: 536 VLLNLQGNSLCQEEGIQERL---AEMLPSVSSIL 566
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 42/315 (13%), Positives = 102/315 (32%), Gaps = 57/315 (18%)
Query: 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188
+ I + + V L + L I + +
Sbjct: 20 NAIKIAAGKSNVTDTVTQAD---------------LDGITTLSAFGTGVT-TIE-GVQYL 62
Query: 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
L +L N + P + + +LS N + L + L L +
Sbjct: 63 NNLIGLELKDNQITDLAP---LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTST 117
Query: 249 HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308
+ + L+ L +L+++ + N ++ ++ L+++++L + ++
Sbjct: 118 QITD-------VTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP- 168
Query: 309 FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS 368
+ LS L L N + I ++L + + L +N++S
Sbjct: 169 -------LANLSKLTTLKADDNKIS-DISP------------LASLPNLIEVHLKNNQIS 208
Query: 369 GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ-LTGLN 427
P + N+ + L+N ++ +NL + ++ I P ++
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVV---PNVVKGPSGAPIAPATISDNG 263
Query: 428 FLSNFNVSYNNLSGP 442
++ N+++N S
Sbjct: 264 TYASPNLTWNLTSFI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 46/297 (15%), Positives = 88/297 (29%), Gaps = 61/297 (20%)
Query: 26 CLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85
L + + + ++ T +L + L + ++ L
Sbjct: 14 PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLS---------AFGTGVTTIEGVQYL 62
Query: 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFP 145
+ L L+L D + + + L + L+LS N +
Sbjct: 63 -------------------NNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA 102
Query: 146 ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGEL 205
I LQ + LD+ D+ + + L + L N +
Sbjct: 103 IAG---------------LQSIKTLDLTSTQIT-DVT-PLAGLSNLQVLYLDLNQITNIS 145
Query: 206 PQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265
P ++G L + N NL+ L L D+N S + L+
Sbjct: 146 P---LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISD-------ISPLAS 193
Query: 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322
L +L + + N +S + N S++ + L IT F+ N +
Sbjct: 194 LPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 31/247 (12%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+L + L I + L +L L++ +NQ++ + L NLT + L+
Sbjct: 36 TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT--DLAPLKNLTKITELE 91
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
++ +++++A ++ L ++ S + T + L+VL L + I
Sbjct: 92 ---LSGNPLKNVSAIAGLQSIKTLDLT--STQITDVTPLAGLS-NLQVLYLDLNQITNIS 145
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
L +L +L + N + + A L KL L N DI
Sbjct: 146 P-LAGLTNLQYLSIGNAQ------VSDLTPLAN---------LSKLTTLKADDNKIS-DI 188
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ + L L N S P ++ L + L+N Q NL +
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244
Query: 242 WLYLDNN 248
+ +
Sbjct: 245 VVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 37/276 (13%), Positives = 87/276 (31%), Gaps = 62/276 (22%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L N ++ +N + +L + L ++ + L +L L+
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE--- 69
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ N + + + L+ L +++ L+LS L + + +
Sbjct: 70 ------LKDNQITDLAPLKNL-------------------TKITELELSGNPLKNVSA-I 103
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
+ LDL++ ++ P+ L L L + N +I
Sbjct: 104 AGLQSIKTLDLTSTQITDVTPLAG---------------LSNLQVLYLDLNQIT-NIS-P 146
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244
+ + L + S P ++ L +N +L +L ++
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKI--SDISPLASLPNLIEVH 201
Query: 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
L NN S + L+ +L ++ + +++
Sbjct: 202 LKNNQISD-------VSPLANTSNLFIVTLTNQTIT 230
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L NL E+ L +N P L N ++L ++ ++N ++ + NL +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSN 92
S I+ +++++ ++
Sbjct: 248 GPSGA---PIAPATISDNGTYASPNLTWNLT 275
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 40/277 (14%)
Query: 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+ I ++ K + E+ + + ++ + + L+
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNG 77
Query: 224 NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283
N I P NL +L WL+LD N L L LK L+ + + N +S +
Sbjct: 78 NKL-TDIKP-LANLKNLGWLFLDENKVK-------DLSSLKDLKKLKSLSLEHNGIS-DI 127
Query: 284 VSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343
+L ++ LYL N IT ++ L+ L L L N + I
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--------LSRLTKLDTLSLEDNQIS-DIVP----- 173
Query: 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
+ L + L LS N +S ++ R + L+N+ L L + SNL
Sbjct: 174 -------LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224
Query: 404 MTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
+ ++ + L P ++ NV ++
Sbjct: 225 VPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 31/247 (12%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +L + N L + + +N+ + ++ + L +
Sbjct: 19 SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVT 71
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+ +N I LAN L L + N ++ + +LK L L + I
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLD--ENKVK-DLSSLKDLKKLKSLSLEHNGISDI- 127
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
+ L+ L L L NNK I + L KL L + N DI
Sbjct: 128 NGLVHLPQLESLYLGNNK------ITDITVLSR---------LTKLDTLSLEDNQIS-DI 171
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
+ + +L LS+N+ S ++G LD+ +L + + NL +
Sbjct: 172 V-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227
Query: 242 WLYLDNN 248
+ +
Sbjct: 228 TVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ L L L LS N+ + + L L +L VL++ + + K + +NL +
Sbjct: 173 PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230
Query: 62 RFSINFQGTISINSLANHSKLEVLLIS 88
+ ++ +++ E +
Sbjct: 231 NTDGSL---VTPEIISDDGDYEKPNVK 254
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
+L ++ + +L +I + +N+ + + L L L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 76
Query: 412 HNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
N+L+ I P L L L + N +
Sbjct: 77 GNKLT-DIKP-LANLKNLGWLFLDENKVK 103
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 29/202 (14%)
Query: 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYL 297
L+L N L+ ++L L L L+ L L + L L
Sbjct: 31 KDTTILHLSENLLY--TFSLATLMPYTRLTQLNL---DRAELT-KLQVDGTLPVLGTLDL 84
Query: 298 QKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYM 357
N + +P L L VL + N L +P L+
Sbjct: 85 SHNQLQ-------SLPLLGQTLPALTVLDVSFNRLT-SLPLGA-----LRG--LGELQE- 128
Query: 358 AGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPES-FSNLKMTESLDLSHNRL 415
L L NEL +P + + L+L+NN L+ +P + L+ ++L L N L
Sbjct: 129 --LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 416 SGHIPPQLTGLNFLSNFNVSYN 437
IP G + L + N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L L LDLS N + +P L L VLD+S N+L+ L L L+ L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-LK 132
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSF 123
N T+ L KLE L ++ +N L + + L L L + L+ IP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLA--NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 124 LLQHYHLIFLDLSNN 138
+ L F L N
Sbjct: 191 FFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348
L+L +N + + L L L L +
Sbjct: 31 KDTTILHLSENLLY-------TFSLATLMPYTRLTQLNLDRAELT--------KLQVD-- 73
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408
L + LDLS N+L +P L + L++S N L+ + L + L
Sbjct: 74 ---GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 409 DLSHNRLSGHIPPQL-TGLNFLSNFNVSYNNLS 440
L N L +PP L T L +++ NNL+
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 55/298 (18%), Positives = 85/298 (28%), Gaps = 102/298 (34%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
+ + E++ N +P + +L +S N L +TL T L L+
Sbjct: 8 KVASHLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN--- 61
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ L +KL+V L L LS L +P
Sbjct: 62 ------LDRAEL---TKLQV----------------DGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
L LD+S N+ L L P G
Sbjct: 97 QTLPALTVLDVSFNR------------------------LTSL-----PLGALRG----- 122
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM--NLTHLHW 242
+GE++ELY L N LP +++ L+ L+NNN P + L +L
Sbjct: 123 LGELQELY---LKGNELK-TLPPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDT 176
Query: 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
L L N L ++ F + +L N
Sbjct: 177 LLLQEN----------------SLYTIPK-------------GFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 46/230 (20%), Positives = 69/230 (30%), Gaps = 56/230 (24%)
Query: 103 PTSQLKVLKLSDCHLHVIPSFLLQHY-HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMG 161
P +L LS+ L+ L Y L L+L + +
Sbjct: 30 PKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------LTKLQVDGT------- 75
Query: 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDL 221
L L LD+ N + +P + L + D+S N + LP
Sbjct: 76 --LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL---------GALR- 121
Query: 222 SNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281
L L LYL N K +L +L+ L L N+L+
Sbjct: 122 --------------GLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSL---ANNNLTE 162
Query: 282 SLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGN 330
L ++ L LQ+N++ IP L L GN
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-------TIPKGFFGSHLLPFAFLHGN 205
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 37/220 (16%)
Query: 221 LSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
+ Q+FP L + L + LV +L ++ + +++
Sbjct: 3 IQRPTPINQVFPDP-GLANAVKQNLGKQSVTD-------LVSQKELSGVQNFNGDNSNIQ 54
Query: 281 GSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340
SL +++K L+L N I+ + + +L+ L L + N L+
Sbjct: 55 -SLAGMQFFTNLKELHLSHNQIS-------DLS-PLKDLTKLEELSVNRNRLKNLNGIPS 105
Query: 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400
L L L +NEL + L+N+ L++ NN L
Sbjct: 106 A-----------CLSR---LFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI--VMLG 147
Query: 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L E LDL N ++ + LT L ++ +++
Sbjct: 148 FLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ NL EL LS N P L +LT L+ L ++ N+L L+ L +LD
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRL-FLD 114
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
+ +SL + LE+L I +N L+ S+L+VL L +
Sbjct: 115 NNELR-----DTDSLIHLKNLEILSIR--NNKLK-SIVMLGFLSKLEVLDLHGNEITNT- 165
Query: 122 SFLLQHYHLIFLDLSNNKVV 141
L + + ++DL+ K V
Sbjct: 166 GGLTRLKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 12/139 (8%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
L N + +L + L+ ++ + N+ + +L + L
Sbjct: 14 PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI-----QSLAGMQFFTNLK 66
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
++ ++ L + +KLE L ++ ++K P++ L L L + L
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT- 121
Query: 122 SFLLQHYHLIFLDLSNNKV 140
L+ +L L + NNK+
Sbjct: 122 DSLIHLKNLEILSIRNNKL 140
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 31/199 (15%)
Query: 220 DLSNNNFFGQIFPK-YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS 278
DL +N + K + LT L LYL++N A I +L L++L + +N
Sbjct: 43 DLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWV---TDNK 96
Query: 279 LSGSLVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGH 335
L +L L ++ L L +N + +P ++ + L+ L L L N LQ
Sbjct: 97 LQ-ALPIGVFDQLVNLAELRLDRNQLK-------SLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 336 IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGA 394
+P + L + L L +N+L +P +L ++ L L NN L
Sbjct: 148 LP----------KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 395 IPESFSNLKMTESLDLSHN 413
+F +L+ + L L N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINF 67
+ +LDL SN + + LT L++L +++N+L L +LE L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 68 QGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
Q + I L L + N L+ + + ++L L L L +P +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLD--RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 127 H-YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN 175
L L L NN++ ++P L +L L + N
Sbjct: 155 KLTSLKELRLYNNQL-------------KRVPEGAFDKLTELKTLKLDNN 191
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 47/227 (20%), Positives = 74/227 (32%), Gaps = 57/227 (25%)
Query: 31 THLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSG 90
K LD+ +N+LS LT L L ++ N L + +G
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY---------LNDNKLQT--------LPAG 79
Query: 91 SNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQH-YHLIFLDLSNNKVVGNFPICSN 149
+ L+ L ++D L +P + +L L L N++
Sbjct: 80 ---------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-------- 122
Query: 150 NNFAGKLPRNMGIVLQKLIYLDM--------PKNIFEGDIPYSIGEMKELYMQDLSRNNF 201
LP + L KL YL + PK +F+ + +KEL + NN
Sbjct: 123 -----SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-----LTSLKELRLY----NNQ 168
Query: 202 SGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
+P+ L L NN + +L L L L N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 9e-08
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 2 GICNLKNLFELDLSSNNFEGHIP-QCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
+ +NL EL + + H+ + L L L+ L I + L P L L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 61 D 61
+
Sbjct: 86 N 86
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIP-ESFSNLKMTESLDLSHNRLSGHIPPQ 422
+ + + + + +N+ L + N + L +L + + L + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74
Query: 423 -LTGLNFLSNFNVSYNNLS 440
LS N+S+N L
Sbjct: 75 AFHFTPRLSRLNLSFNALE 93
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 8e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 352 SNLKYMAGLDLSSNELSGEIPRE-IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
NL L + + + + + L +R L + + L P++F L+L
Sbjct: 31 ENLTE---LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439
S N L + + L +S N L
Sbjct: 88 SFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 311 RIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370
+ + NL L + H+ L + L + + L
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRD----------LRGLGELRNLTIVKSGLR-F 70
Query: 371 IPREIGQ-LQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415
+ + + LNLS N L ++ L + E L LS N L
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE-LVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKH 294
+L LY++N ++ L L L + I ++ L +F +
Sbjct: 29 GAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 295 LYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQ 333
L L NA+ + ++ + +L L+L GN L
Sbjct: 85 LNLSFNALE-------SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 7e-04
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 220 DLSNNNFFGQIFPKYM-NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS 278
+ N + + + L L L + + DA L +++ N+
Sbjct: 37 YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-----FHFTPRLSRLNLSFNA 91
Query: 279 LSGSLVSSFNLSSVKHLYLQKNAIT 303
L + S++ L L N +
Sbjct: 92 LESLSWKTVQGLSLQELVLSGNPLH 116
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 64/471 (13%), Positives = 120/471 (25%), Gaps = 173/471 (36%)
Query: 24 PQCL------NNLTHLKVLDIS------------NNQLSGKVPSTLT------NLTSLEY 59
CL N ++S + LS + ++ LT E
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 60 LDRFSINFQGTISINSLANHSKLEV--LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117
+ L L +S + ++ TW + KL+
Sbjct: 304 KSLLL-KYLD-CRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---- 356
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIF 177
+I S L L+ P +K+ + + ++F
Sbjct: 357 TIIESSLNV------LE----------------------PAEY----RKM-FDRL--SVF 381
Query: 178 EGD--IPYSIGEMKELYMQDLSR--NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPK 233
IP + LS + +V+ L +
Sbjct: 382 PPSAHIPTIL----------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES------- 424
Query: 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVK 293
+ +YL+ + V+L +L S+V +N+
Sbjct: 425 ---TISIPSIYLE------------LKVKLENEYALH----------RSIVDHYNIPKTF 459
Query: 294 HL-YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN-ELCHVSRFLHRFY 351
L + D F+ I + H+ N E +
Sbjct: 460 DSDDLIPPYL--DQYFYSHIGH--------------------HLKNIEHPERMTLFRMVF 497
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK-----MTE 406
+ +++ Q IR + + N SG+I + LK + +
Sbjct: 498 LDFRFLE--------------------QKIRHDSTAWN-ASGSILNTLQQLKFYKPYICD 536
Query: 407 SLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSY 457
+ D + RL I L+FL + N + D + A E
Sbjct: 537 N-DPKYERLVNAI------LDFL--PKIEENLICSKYTDLLRIALMAEDEA 578
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 50/336 (14%), Positives = 95/336 (28%), Gaps = 66/336 (19%)
Query: 9 LFELDLSSNNF--EG--HIPQCLNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYL 60
+ L + E + L +K + +S N + + + + + LE
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL--- 117
+ FS F G + L L +L ++LSD
Sbjct: 66 E-FSDIFTGRVKDEIPEALRLL--------LQALLKCP-------KLHTVRLSDNAFGPT 109
Query: 118 --HVIPSFLLQHYHLIFLDLSNNKV--VGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP 173
+ FL +H L L L NN + I L +
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICG 167
Query: 174 KNIFEGDIPYSIGEM-------KELYMQDLSRNNFSGELPQPIV----SGCVALDLFDLS 222
+N E + + + +N E + ++ + C L + DL
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTV---KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224
Query: 223 NNNF-------FGQIFPKYMNLTHLHWLYLDNNHFS--GKMDDANILVQLSQLKSLELID 273
+N F + +L L L++ S G + +L L+ +
Sbjct: 225 DNTFTHLGSSALAIALK---SWPNLRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLR 280
Query: 274 IFENSLSGSLVSSF------NLSSVKHLYLQKNAIT 303
+ N + V + + + L L N +
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 33/170 (19%)
Query: 2 GICNLKNLFELDLSSNNF--EG--HIPQCLNNLTHLKVLDISNNQLS------------- 44
+ L + LS N F + L+ T L+ L + NN L
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 45 GKVPSTLTNLTSLEYLD--RFSINFQGTISI-NSLANHSKLEVLLISSGSNMLQVK---- 97
V N L + R + + +H L + + N ++ +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV--QNGIRPEGIEH 206
Query: 98 --TETWHPTSQLKVLKLSDCHL-----HVIPSFLLQHYHLIFLDLSNNKV 140
E +LKVL L D + L +L L L++ +
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 290 SSVKHLYLQKNAITG-DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348
++ + L++N I F + L + L N + + + F
Sbjct: 32 ETITEIRLEQNTIKVIPPGAF-------SPYKKLRRIDLSNNQIS-ELAPDA-----FQG 78
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
+L L L N+++ E+P+ + L +++ L L+ N ++ ++F +L
Sbjct: 79 --LRSLNS---LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 408 LDLSHNRLS 416
L L N+L
Sbjct: 133 LSLYDNKLQ 141
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 288 NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRF 346
++ + L N I+ + L +L+ L+L GN + +P L
Sbjct: 54 PYKKLRRIDLSNNQIS-------ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL------ 99
Query: 347 LHRFYS--NLKYMAGLDLSSNELSGEIPREIGQ-LQNIRALNLSNNFLSGAIPESFSNLK 403
F +L+ L L++N+++ + + Q L N+ L+L +N L +FS L+
Sbjct: 100 ---FEGLFSLQL---LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 404 MTESLDLSHN 413
+++ L+ N
Sbjct: 153 AIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 49/156 (31%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295
L + L NN Q+ L D F+ L S+ L
Sbjct: 54 PYKKLRRIDLSNN----------------QISELA-PDAFQ-----------GLRSLNSL 85
Query: 296 YLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
L N IT +P + L +L +LLL N + + + + +L
Sbjct: 86 VLYGNKIT-------ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA----------FQDL 127
Query: 355 KYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNN 389
+ L L N+L I + L+ I+ ++L+ N
Sbjct: 128 HNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65
L++L L L N L L++L ++ N+++ +L +L L
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS-LYD 137
Query: 66 NFQGTISINSLANHSKLEVLLISS 89
N TI+ + + ++ + ++
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQ 161
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
K L +DLS+N P L L L + N+++ S L SL+ L +
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL-LN 112
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQ-VKTETWHPTSQLKVLKLS------DCHL 117
N + +++ + L +L + N LQ + T+ P ++ + L+ DCHL
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLY--DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170
Query: 118 HVIPSFLLQH 127
+ +L +
Sbjct: 171 KWLADYLHTN 180
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 23/190 (12%), Positives = 58/190 (30%), Gaps = 15/190 (7%)
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQL--KSLELIDIFENSLSGSLVSSFNLSSVK 293
H L+ + F + V LS + L ++ + + ++K
Sbjct: 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK 196
Query: 294 HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSN 353
L + + ++L NL L+L ++ +
Sbjct: 197 SLEIISGGLPDS----VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--DR 250
Query: 354 LKYMAGLDLSSNELSGEIPREIGQ---LQNIRALNLSNNFLSG----AIPESFSNLKMTE 406
+ L + E + + L + +++S L+ + + +K +
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 407 SLDLSHNRLS 416
+++ +N LS
Sbjct: 311 FINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 9e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 5 NLKNLFELDLSSNNF--EG--HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTN 53
L L +D+S+ EG + ++ + HLK +++ N LS ++ L
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
Y+N LDL ++ I L A++ S+N + + F L+ ++L +
Sbjct: 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
++NR+ L L+ ++ N+L
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
N ELDL I L +D S+N++ + L L+ L
Sbjct: 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 70
Query: 62 RFSINFQGTISINSLANHSKLEVLLISS 89
+ N I L L++++
Sbjct: 71 -VNNNRICRIGEGLDQALPDLTELILTN 97
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYL 60
G L+ L L +++N L L L ++NN L L +L SL YL
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118
Query: 61 D 61
Sbjct: 119 C 119
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 315 QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374
Q L LRG + I N L +D S NE+ ++
Sbjct: 14 QYTNAVRDRELDLRGYKIP-VIEN--------LGATLDQFDA---IDFSDNEIR-KL-DG 59
Query: 375 IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416
L+ ++ L ++NN + L L L++N L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L +D S N L LK L ++NN++ L L L +
Sbjct: 40 TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI-LT 96
Query: 65 INFQGTIS-INSLANHSKLEVL 85
N + ++ LA+ L L
Sbjct: 97 NNSLVELGDLDPLASLKSLTYL 118
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 30/152 (19%)
Query: 290 SSVKHLYLQKNAITG--DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
L L N T F + L L + N + I F
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKK-------LPQLRKINFSNNKIT-DIEEGA-----FE 78
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTE 406
S + + L+SN L + ++ L++++ L L +N ++ +SF L
Sbjct: 79 G--ASGVNE---ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 407 SLDLSHNRLSGHIPP-------QLTGLNFLSN 431
L L N+++ + P L+ LN L+N
Sbjct: 133 LLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ E+ L+SN E + L LK L + +N+++ + L+S+ L
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 51/171 (29%)
Query: 223 NNNFFGQIFPKYM--NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS 280
NNN F + + L L + NN ++ +E FE
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNN----------------KITDIE-EGAFE---- 78
Query: 281 GSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNE 339
S V + L N + + +++ L +L L+LR N + + N+
Sbjct: 79 -------GASGVNEILLTSNRLE-------NVQHKMFKGLESLKTLMLRSNRIT-CVGND 123
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI-GQLQNIRALNLSNN 389
+ L + L L N+++ + L ++ LNL N
Sbjct: 124 S----------FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
L L +++ S+N + + + +++N+L L SL+ L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 360 LDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
L L++NE + I +L +R +N SNN ++ +F + L+ NRL
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95
Query: 419 IPPQL-TGLNFLSNFNVSYNNLS 440
+ ++ GL L + N ++
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRIT 118
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 40/174 (22%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ LK L LS+NN E I L+ + +L++L + N + K+ + +LE L
Sbjct: 43 TLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99
Query: 62 RFSINFQGTIS-INSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
S N I+ ++ + L VL +S +N + W +L L
Sbjct: 100 -ISYNQ---IASLSGIEKLVNLRVLYMS--NNKI----TNWGEIDKLAALD--------- 140
Query: 121 PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV---LQKLIYLD 171
L L L+ N P+ ++ V L L LD
Sbjct: 141 --------KLEDLLLAGN------PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 24/161 (14%)
Query: 263 LSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322
++ + +EL + + + L + KHL L N I K ++ + NL
Sbjct: 22 ATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIE---KISS-----LSGMENL 72
Query: 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR 382
+L L N ++ I N L L+ L +S N+++ + I +L N+R
Sbjct: 73 RILSLGRNLIK-KIEN--------LDAVADTLEE---LWISYNQIA-SL-SGIEKLVNLR 118
Query: 383 ALNLSNNFLSGAIP-ESFSNLKMTESLDLSHNRLSGHIPPQ 422
L +SNN ++ + + L E L L+ N L
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
+R S++K + LD S + G++ + + + L+ N L+ + L +
Sbjct: 13 NRTPSDVKELV-LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKK 68
Query: 408 LDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
L+LS NR+SG + L++ N+S N +
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYL 60
+ L L +L+LS N G + +L L++S N++ L L +L+ L
Sbjct: 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118
Query: 61 D 61
D
Sbjct: 119 D 119
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ L L + I L L LK L++S+N++SG + +L +L+
Sbjct: 37 LTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94
Query: 62 RFSINFQGTISINSLANHSKLEVL 85
+ +I L L+ L
Sbjct: 95 LSGNKIKDLSTIEPLKKLENLKSL 118
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
LD + G+I + N+ L+L N L + L + L+LS NR+ G +
Sbjct: 31 LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87
Query: 420 PPQLTGLNFLSNFNVSYNNLS 440
L L++ N+S N L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSG-KVPSTLTNLTSLEYL 60
+ L L +L+LS N G + L +L L++S N+L L L L+ L
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125
Query: 61 D 61
D
Sbjct: 126 D 126
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 51/360 (14%), Positives = 97/360 (26%), Gaps = 61/360 (16%)
Query: 22 HIPQCLNNLTHLKVLDISNNQLSGKVPSTL-----TNLTSLEYLDRFSINFQGTISINSL 76
+ + + + LD+S N L L S+ L+ S N G + + L
Sbjct: 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN-LSGNSLGFKNSDEL 71
Query: 77 A-----NHSKLEVLLISSGSNMLQVKTETW------HPTSQLKVLKLSDCHL------HV 119
+ + L +S N L K+ + VL L
Sbjct: 72 VQILAAIPANVTSLNLS--GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG 179
+F + L+L N + + +L + + + + L++ N
Sbjct: 130 KQAFSNLPASITSLNLRGNDL--------GIKSSDELIQILAAIPANVNSLNLRGNNLAS 181
Query: 180 DIPYSIGEM--------KELYMQDLSRNNFSGELPQPIVSGCVA----LDLFDLSNNNFF 227
+ + L DLS N + + + + +L N
Sbjct: 182 KNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238
Query: 228 GQ----IFPKYMNLTHLHWLYLDNNHFS--GKMDDANILVQLSQLKSLELIDIFENSLSG 281
G + +L HL +YLD + K + ++ + L+D +
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298
Query: 282 SLVSSF------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGH 335
S L + K +N L + L H
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQCLIFAQK-HQTNIEDLNIPDELRESIQTCKPLLEH 357
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 40/252 (15%), Positives = 87/252 (34%), Gaps = 41/252 (16%)
Query: 195 DLSRNNFSGE----LPQPIVSGCVALDLFDLSNNNF-------FGQIFPKYMNLTHLHWL 243
+LS N+ + L Q + + + +LS N + + L
Sbjct: 57 NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA--IPFTITVL 114
Query: 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLS-------GSLVSSFNLSSVKHLY 296
L N FS K + S+ +++ N L ++++ ++V L
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLN 173
Query: 297 LQKNAITGDN-KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLK 355
L+ N + N + I +++ L L N L EL ++ +++
Sbjct: 174 LRGNNLASKNCAELAKFLASIP--ASVTSLDLSANLLGLKSYAELAYI---FSSIPNHVV 228
Query: 356 YMAGLDLSSNELSGEIPREIGQL----QNIRALNLSNNFLSG-------AIPESFSNLKM 404
L+L N L G + L ++++ + L + + A+ +F N++
Sbjct: 229 S---LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285
Query: 405 TESLDLSHNRLS 416
+D + +
Sbjct: 286 IILVDKNGKEIH 297
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 62/430 (14%), Positives = 126/430 (29%), Gaps = 56/430 (13%)
Query: 5 NLKNLFELDLSS-NNF-EGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLT----NLTSLE 58
+ KN L LSS F + +LK LD+ + + L+ TSL
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187
Query: 59 YLDRFSINFQGT-ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDC-H 116
L+ + + + ++ L LK LKL+
Sbjct: 188 SLNISCLASEVSFSALERLVTRCP------------------------NLKSLKLNRAVP 223
Query: 117 LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176
L + + L + L L + S + A ++L L +
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG-------CKELRCLSGFWDA 276
Query: 177 FEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL---DLFDLSNNNFFGQIFPK 233
+P L +LS ++ C L + D + +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336
Query: 234 YMNLTHLHWLYLDNNHFSG--KMDDANILVQLSQLKSLELIDIFENSLSGSLVS--SFNL 289
+L L + + + ++ LE + F ++ + + + N
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396
Query: 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE-LCHVSRFLH 348
++ L + H LR SL G + ++ ++ +
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA- 455
Query: 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQ-LQNIRALNLSN-NFLSGAIPESFSNLKMTE 406
++ L ++ S + ++R L + + F A+ + S L+
Sbjct: 456 ---KKMEM---LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509
Query: 407 SLDLSHNRLS 416
SL +S +S
Sbjct: 510 SLWMSSCSVS 519
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419
L L N+ + +P+E+ +++ ++LSNN +S +SFSN+ +L LS+NRL I
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93
Query: 420 PP----QLTGLNFLS 430
PP L L LS
Sbjct: 94 PPRTFDGLKSLRLLS 108
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
EL L N F +P+ L+N HL ++D+SNN++S + +N+T L L
Sbjct: 35 ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.97 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.8 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.77 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.67 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.51 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.5 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.49 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.44 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.32 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.26 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.22 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.82 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.79 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.56 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.5 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.4 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.12 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.06 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.6 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.42 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.4 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.21 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 80.44 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=489.14 Aligned_cols=459 Identities=33% Similarity=0.468 Sum_probs=348.3
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
+.++++|++|+|++|++.+..|. +.++++|++|++++|.+++..|..|.++++|++|++++|.+.+.++.. .+++|
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L 271 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSL 271 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCC
Confidence 35678888888888888876666 888888888888888888888888888888888888888887766532 67777
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCcccccCCC-------------CC
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPI-------------CS 148 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~-------------~~ 148 (551)
++|++++|.+.+.++...+..+++|++|++++|.+ ..+|..+..+++|++|++++|.+++.+|. +.
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 77777777766566554444456777777777776 35666667777777777777766654442 34
Q ss_pred CCcccccCChhHhhh--------------------------cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccc
Q 046908 149 NNNFAGKLPRNMGIV--------------------------LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS 202 (551)
Q Consensus 149 ~~~~~~~l~~~~~~~--------------------------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 202 (551)
.+.+.+.+|..+... +++|++|++++|.+.+..|..+.++++|+.|++++|++.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 445555555554432 334555555555555556666666666666666666666
Q ss_pred eeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCccccc
Q 046908 203 GELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGS 282 (551)
Q Consensus 203 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 282 (551)
+.+|..+ ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++.
T Consensus 432 ~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 432 GTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-----IPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-----CCHHHhcCCCCCEEEccCCccCCc
Confidence 5555443 4466677777777766666666666677777777777776653 344477777777777777777777
Q ss_pred CCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh--------------
Q 046908 283 LVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL-------------- 347 (551)
Q Consensus 283 ~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------- 347 (551)
.+..+ .+++|++|++++|.++ +.+|..+..+++|++|++++|++++.+|..+.....+.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFS------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCE------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred CChHHhcCCCCCEEECCCCccc------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 77666 7777788888777665 47888889999999999999999988888765432210
Q ss_pred ---------------------------------------------hHhhhccccCceEecCCCcCcccCCccccCCCCCc
Q 046908 348 ---------------------------------------------HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR 382 (551)
Q Consensus 348 ---------------------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 382 (551)
...+..++.|+.|+|++|++++.+|..++++++|+
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 659 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence 01245578899999999999999999999999999
Q ss_pred EEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCC
Q 046908 383 ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHE 462 (551)
Q Consensus 383 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~ 462 (551)
.|+|++|++++.+|..+.++++|+.|||++|++++.+|..+..++.|++|++++|+++|.+|...++.++....+.|||.
T Consensus 660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCccccCCCCCCCCC
Q 046908 463 LCGSLIRKKCSSALKP 478 (551)
Q Consensus 463 ~c~~~~~~~c~~~~~~ 478 (551)
+|+.++. .|......
T Consensus 740 Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 740 LCGYPLP-RCDPSNAD 754 (768)
T ss_dssp EESTTSC-CCCSCC--
T ss_pred hcCCCCc-CCCCCccC
Confidence 9999876 78765443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=455.54 Aligned_cols=460 Identities=30% Similarity=0.398 Sum_probs=341.0
Q ss_pred CCCCCCCCCEEECcCCCCcccCCc--cCCCCCCCCEEEcccCcCccccchhc-cCCCCCCEeeCCCCccccccChhh--h
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQ--CLNNLTHLKVLDISNNQLSGKVPSTL-TNLTSLEYLDRFSINFQGTISINS--L 76 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~--~ 76 (551)
+++++++|++|||++|++.+.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+.+..+... +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 466778888888888887776666 77777777777777777776666554 566667777776666654433211 2
Q ss_pred ----------------------cCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCC-CCchhhhCCCCCCEE
Q 046908 77 ----------------------ANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSFLLQHYHLIFL 133 (551)
Q Consensus 77 ----------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 133 (551)
..+++|++|++++|.+...++. +..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4556666666666665544443 778888888888888884 667788888899999
Q ss_pred EccCCcccccCCC----------CCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccce
Q 046908 134 DLSNNKVVGNFPI----------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG 203 (551)
Q Consensus 134 ~Ls~n~l~~~~~~----------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 203 (551)
++++|.+++..|. +..+.+.+.+|..++..+++|++|++++|.+.+..|..+.++++|++|++++|++.+
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9999988876664 566777778888887766899999999999999999999999999999999999988
Q ss_pred eCChhhhhCCCCCCEEECcCCcccccCCcccCCCC-CCCEEecccccccCcCCC---------------------chhhH
Q 046908 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT-HLHWLYLDNNHFSGKMDD---------------------ANILV 261 (551)
Q Consensus 204 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~---------------------~~~~~ 261 (551)
.+|...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+++..+. +.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 99988778888899999988888776666665554 555555555544321110 02344
Q ss_pred hhccCCCCCEEECCCCcccccCCCcc-cccccceeecccccccc------------------CccceeccCccccccCCC
Q 046908 262 QLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITG------------------DNKFFGRIPYQINELSNL 322 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~------------------~~~~~~~~~~~~~~l~~L 322 (551)
.+..+++|++|++++|.+++..+..+ .+++|++|++++|.+++ .+.+.+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 46667777777777777766655555 56666666666665542 233344667777777777
Q ss_pred ceEEecCCcccccCChhhhhhhch-------------hhHhhhccccCceEecCCCcCcccCCccc--------------
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELSGEIPREI-------------- 375 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------- 375 (551)
++|++++|++++.+|..+..++++ ....+..+++|+.|++++|.+++.+|..+
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 777777777777777776665554 12345677888888888888776666433
Q ss_pred --------------------------------------------------------cCCCCCcEEEcCCCCCCCcccccc
Q 046908 376 --------------------------------------------------------GQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 376 --------------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
..+++|+.|++++|++++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 335678899999999999999999
Q ss_pred cCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 400 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
+++++|+.|+|++|++++.+|..+..++.|++||+++|+++|.+|. ...+..+..+++++|+..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999999999999999999999999999887 566778888888888643
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=460.66 Aligned_cols=454 Identities=20% Similarity=0.215 Sum_probs=268.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccc-cchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
++|++|||++|.|++..+.+|.++++|++|+|++|...+. .|.+|.++++|++|+|++|.+.+.. +..|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccCEe
Confidence 4566666666666655566666666666666666633322 2555666666666666666665332 2446666666666
Q ss_pred EcccCcccccccC-CCccCCCCccEEEccCCCCCCC--chhhhCCCCCCEEEccCCcccccCCC--------------CC
Q 046908 86 LISSGSNMLQVKT-ETWHPTSQLKVLKLSDCHLHVI--PSFLLQHYHLIFLDLSNNKVVGNFPI--------------CS 148 (551)
Q Consensus 86 ~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~~ 148 (551)
++++|.+....+. ..|..+++|++|++++|.+..+ +..+.++++|++|++++|.+++..+. +.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 6666655443322 2355666666666666666433 23456666666666666655432221 11
Q ss_pred CCcccccCChhHhh-----------------------------------------------------------------h
Q 046908 149 NNNFAGKLPRNMGI-----------------------------------------------------------------V 163 (551)
Q Consensus 149 ~~~~~~~l~~~~~~-----------------------------------------------------------------~ 163 (551)
.+.+.+..|..+.. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 22222222211110 0
Q ss_pred --cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 164 --LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 164 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
.++|+.|++++|.+.+..+..|..+++|+.|++++|++. .++...|.++++|++|++++|.+.+..+..|.++++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 134555555555555555555555555555555555555 33333344555555555555555555555555555555
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccC--------------cc
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGD--------------NK 307 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--------------~~ 307 (551)
.|++++|.+....+.. |..+++|++|++++|.+++... +++|+.|++++|+++.. |.
T Consensus 342 ~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQT-----FKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSC-----SCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhh-----hcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCc
Confidence 5555555555443332 4555555555555555544321 33444444444433310 00
Q ss_pred cee-ccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-----ccCCccccCCCCC
Q 046908 308 FFG-RIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-----GEIPREIGQLQNI 381 (551)
Q Consensus 308 ~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L 381 (551)
+.+ ..+..+..+++|+.|++++|++++..+... +..+++|+.|++++|.++ +..+..|.++++|
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS----------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccc----------cccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 000 001113356777777777777764333221 345678888888888876 3445668889999
Q ss_pred cEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCC
Q 046908 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461 (551)
Q Consensus 382 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~ 461 (551)
++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+++.+||
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 9999999999988888899999999999999999977776666 78999999999999888854 5678889999999
Q ss_pred CCCCcccc-------------------CCCCCCCCCCCCCCCC
Q 046908 462 ELCGSLIR-------------------KKCSSALKPPATPTEE 485 (551)
Q Consensus 462 ~~c~~~~~-------------------~~c~~~~~~~~~~~~~ 485 (551)
+.|+|+.. ..|..|....+.+...
T Consensus 559 ~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~ 601 (844)
T 3j0a_A 559 FICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS 601 (844)
T ss_dssp CCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTT
T ss_pred cccccccHHHHHHHHhcCcccccccccCccCCchhhCCCcccc
Confidence 99988642 4677776655555333
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=426.56 Aligned_cols=445 Identities=21% Similarity=0.194 Sum_probs=275.5
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|+++++.|.+|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+. +...+..+++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l-~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG-GGSCCTTCTT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC-CcchhccCCc
Confidence 356666777777777766666666677777777777777766666666666777777777776666642 2234666677
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCC--EEEccCCcccccCCCCCCCc-------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLI--FLDLSNNKVVGNFPICSNNN------- 151 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~------- 151 (551)
|++|++++|.+.....+ .+.++++|++|++++|.+..+ +..+..+++|+ +|++++|.+++..|......
T Consensus 131 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred ccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 77777776664432222 334467777777777777555 34566777777 67777777665443311000
Q ss_pred -----------------------------ccccCChhHhhhcC--CccEEEccCCcccccCCcccccCCCCcEEECcCCc
Q 046908 152 -----------------------------FAGKLPRNMGIVLQ--KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 152 -----------------------------~~~~l~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 200 (551)
-...++...+..+. +++.|++++|.+.+..+..|..+++|+.|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 00011111111111 34555555555554444445555555555555555
Q ss_pred cceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCC-Cc-------------------h--
Q 046908 201 FSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMD-DA-------------------N-- 258 (551)
Q Consensus 201 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~-------------------~-- 258 (551)
++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .. .
T Consensus 290 l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 54 444432 334555555555555554444444444555555555544432111 11 0
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccC
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHI 336 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 336 (551)
.+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.++. ..+ ..+..+++|++|++++|.+.+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV------KDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC------CTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC------cccchhhhCcccCCEEECCCCccCCcC
Confidence 02224555555555555555555544444 45555555555555441 222 22555566666666666655444
Q ss_pred ChhhhhhhchhhHhhhccccCceEecCCCcCccc---CCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCC
Q 046908 337 PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE---IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 337 p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 413 (551)
|.. +..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|.++++|+.|++++|
T Consensus 442 ~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 442 EQL-----------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTT-----------TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HHH-----------HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 433 46788899999999998762 3356888999999999999999888888999999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++++..|..+..++.| +|++++|++++..|. ...+..++.+++.+||+.|+|+.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9998889999999999 999999999987776 35567888999999999999974
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=422.62 Aligned_cols=452 Identities=23% Similarity=0.215 Sum_probs=277.9
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
|+++++|++|+|++|++++..|.+|.++++|++|+|++|.++...+.+|.++++|++|++++|.+.+ ++...|.++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCC
Confidence 4556666666666666666666666666666666666666664444456666666666666666653 333456666777
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchh-h--hCCCCCCEEEccCCcccccCCC-------------
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSF-L--LQHYHLIFLDLSNNKVVGNFPI------------- 146 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~~~L~~L~Ls~n~l~~~~~~------------- 146 (551)
++|++++|.+.. .++..+..+++|++|++++|.++.++.. + ..+++|++|++++|.+++..|.
T Consensus 124 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 777776665433 2333456666777777777776555432 2 2446677777777766543332
Q ss_pred --------------------------CCCCcccccCChhHhhhc--CCccEEEccCCcccccCCcccccCCCCcEEECcC
Q 046908 147 --------------------------CSNNNFAGKLPRNMGIVL--QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSR 198 (551)
Q Consensus 147 --------------------------~~~~~~~~~l~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 198 (551)
+.++.+.+..|..+. .+ ++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 112222222232222 23 3478888888877777777777778888888887
Q ss_pred CccceeCChh--------------------------------hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 199 NNFSGELPQP--------------------------------IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 199 n~l~~~~~~~--------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|++.+..|.. .+..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 7776433321 23345566666666666666666666666666666666
Q ss_pred cccccCc--CCC---------------------chhhHhhccCCCCCEEECCCCcccccCC-Ccc-cccccceeeccccc
Q 046908 247 NNHFSGK--MDD---------------------ANILVQLSQLKSLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNA 301 (551)
Q Consensus 247 ~n~l~~~--~~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~ 301 (551)
+|.+... ... ...+..+..+++|++|++++|.+.+..+ ..+ ++++|++|++++|.
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 6543211 000 0112234445555555555555544322 223 44555555555554
Q ss_pred cccC------------------ccc--eeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 302 ITGD------------------NKF--FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 302 l~~~------------------~~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
++.. +.+ .+.+|..+..+++|++|++++|++++..|. .|.++++|++|+
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-----------~~~~l~~L~~L~ 510 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-----------MLEGLEKLEILD 510 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEE
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh-----------hhccccccCEEe
Confidence 4310 000 012344444555555555555555432222 246777788888
Q ss_pred cCCCcCcccCC--------ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 362 LSSNELSGEIP--------REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 362 Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
+++|.+++..+ ..+.++++|++|++++|+++.+.+..|.++++|+.|++++|++++..+..|..+++|+.|+
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 88888774321 2367788888888888888866666788899999999999999877777788889999999
Q ss_pred CCCCccccCCCCC-c-cCCccCCcccCCCCCCCCccc
Q 046908 434 VSYNNLSGPTPDK-E-QFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 434 l~~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+++|++++..+.. . .+..+..+++.+|||.|+|+.
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999998877652 2 567888999999999999974
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=418.68 Aligned_cols=432 Identities=18% Similarity=0.150 Sum_probs=325.5
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+.. +..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEEE
Confidence 56888888888888777778888888888888888888777778888888888888888877443 35678888888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCC--CCchhhhCCCCCCEEEccCCcccccCCC----------------CC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH--VIPSFLLQHYHLIFLDLSNNKVVGNFPI----------------CS 148 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~Ls~n~l~~~~~~----------------~~ 148 (551)
+++|.+. .+++..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+. +.
T Consensus 111 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 8877644 344445778888888888888885 4677888888888888888877654332 11
Q ss_pred CCcccccCChhHh-------------------------------------------------------------------
Q 046908 149 NNNFAGKLPRNMG------------------------------------------------------------------- 161 (551)
Q Consensus 149 ~~~~~~~l~~~~~------------------------------------------------------------------- 161 (551)
.+.+. .++...+
T Consensus 190 ~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 22222 1222222
Q ss_pred -------------hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 162 -------------IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 162 -------------~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
..+++|+.|++++|.+.. +| .+..+++|+.|++++|++ +.+|. + .+++|+.|++++|+..+
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCE
T ss_pred cccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCcc
Confidence 224455555555555542 23 556666777777777777 36662 2 57777777777775443
Q ss_pred cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccc
Q 046908 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 229 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 308 (551)
.. .+..+++|++|++++|.+++.. ..+..+..+++|++|++++|.+++.+.....+++|++|++++|.++.
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~---- 413 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSG---CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---- 413 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEE---ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES----
T ss_pred ch--hhccCCCCCEEECcCCccCCCc---chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC----
Confidence 32 5667888888888888776532 12455788888888888888888766333378889999998888762
Q ss_pred eeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEc
Q 046908 309 FGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNL 386 (551)
Q Consensus 309 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L 386 (551)
..| ..+..+++|++|++++|.+.+..|.. +.++++|+.|++++|.+++ ..|..+..+++|++|++
T Consensus 414 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 414 --VTEFSAFLSLEKLLYLDISYTNTKIDFDGI-----------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp --TTTTTTTTTCTTCCEEECTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred --ccChhhhhccccCCEEECcCCCCCccchhh-----------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 334 46778889999999999988767665 4678899999999999997 47889999999999999
Q ss_pred CCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCC-ccCCcccCCCCCCCC
Q 046908 387 SNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFA-TFDESSYTGNHELCG 465 (551)
Q Consensus 387 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~n~~~c~ 465 (551)
++|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|+++...+....++ .++.+++.+||+.|+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999998889999999999999999999999889999999999999999999997666555555 588999999999999
Q ss_pred cccc
Q 046908 466 SLIR 469 (551)
Q Consensus 466 ~~~~ 469 (551)
|+..
T Consensus 561 c~~~ 564 (606)
T 3vq2_A 561 CEHQ 564 (606)
T ss_dssp STTH
T ss_pred CccH
Confidence 9854
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=398.80 Aligned_cols=428 Identities=20% Similarity=0.206 Sum_probs=317.9
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|+++++.|.+|.++++|++|+|++|.++++.|++|.++++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence 479999999999999889999999999999999999998999999999999999999999985544 5799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+++|.+.. +++..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++ .++...+..++
T Consensus 112 L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~ 177 (606)
T 3t6q_A 112 FIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-------------YLSKEDMSSLQ 177 (606)
T ss_dssp CTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-------------EECHHHHHTTT
T ss_pred ccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-------------ccChhhhhhhc
Confidence 99998554 44456899999999999999997763 34455999999999999998 56555555678
Q ss_pred Ccc--EEEccCCcccccCCcccccC---------------------------------------------------CCCc
Q 046908 166 KLI--YLDMPKNIFEGDIPYSIGEM---------------------------------------------------KELY 192 (551)
Q Consensus 166 ~L~--~L~L~~n~~~~~~~~~~~~l---------------------------------------------------~~L~ 192 (551)
+|+ .|++++|.+.+..|..+... .+|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 88888888887766554321 1678
Q ss_pred EEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEE
Q 046908 193 MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272 (551)
Q Consensus 193 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 272 (551)
.|++++|++. .++...+..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 258 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L 330 (606)
T 3t6q_A 258 SINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC-----QISASNFPSLTHL 330 (606)
T ss_dssp EEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG-----GGCGGGCTTCSEE
T ss_pred EEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc-----hhhhhccCcCCEE
Confidence 8899999987 777777888999999999999998 56778999999999999999998643 3458889999999
Q ss_pred ECCCCcccccCC-Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh---
Q 046908 273 DIFENSLSGSLV-SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL--- 347 (551)
Q Consensus 273 ~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~--- 347 (551)
++++|.+.+..+ ..+ .+++|++|++++|.++.. ...+..+..+++|++|++++|++.+..|..+..++++.
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETS----DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE----EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccc----cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 999998875444 335 889999999999988620 11255677888888888888888866666654333320
Q ss_pred -----------hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCc---ccccccCCCCCCEEeCCCC
Q 046908 348 -----------HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGA---IPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 348 -----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n 413 (551)
...+..+++|+.|++++|.+++..|..+.++++|++|++++|++++. .+..+..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 01244555566666666666555555556666666666666665542 1234555666666666666
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNH 461 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~ 461 (551)
++++..|..|..+++|++|++++|++++..|. ...+..+ .+++.+|.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 66655556666666666666666666555443 2233334 44444444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=396.03 Aligned_cols=417 Identities=20% Similarity=0.209 Sum_probs=324.6
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|++++..+.+|.++++|++|+|++|.+++..+++|.++++|++|++++|.+.+ ++...|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 479999999999998888899999999999999999998888899999999999999999884 4556799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCC--CchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV--IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
+++|.+. .++...+..+++|++|++++|.+.. +|..+.++++|++|++++|.+++. +...+..+
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l 172 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------------YCTDLRVL 172 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-------------CGGGGHHH
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-------------cHHHccch
Confidence 9998744 4444468999999999999999965 789999999999999999998742 22222223
Q ss_pred CCc----cEEEccCCcccccCC----------------------------------------------------------
Q 046908 165 QKL----IYLDMPKNIFEGDIP---------------------------------------------------------- 182 (551)
Q Consensus 165 ~~L----~~L~L~~n~~~~~~~---------------------------------------------------------- 182 (551)
++| +.+++++|.+.+..+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 333 444444444443333
Q ss_pred -----------------------cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC
Q 046908 183 -----------------------YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH 239 (551)
Q Consensus 183 -----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 239 (551)
..+..+++|+.|++++|.+. .+|..+. .+ +|++|++++|.+.. .|. ..+++
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~~-l~~--~~l~~ 326 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFGQ-FPT--LKLKS 326 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCSS-CCB--CBCSS
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCcccc-cCc--ccccc
Confidence 34444555555555555554 4554432 23 56666666665542 222 34556
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC--CCcc-cccccceeeccccccccCccceeccCccc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL--VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQI 316 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 316 (551)
|+.|++++|.+....+ ...+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .++..+
T Consensus 327 L~~L~l~~n~~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~ 392 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFS-------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSNF 392 (570)
T ss_dssp CCEEEEESCBSCCBCC-------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-------EEEEEE
T ss_pred cCEEeCcCCccccccc-------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-------cccccc
Confidence 6666666665544221 256788888888888887654 3334 7888999999988876 455558
Q ss_pred cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC-Ccc
Q 046908 317 NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS-GAI 395 (551)
Q Consensus 317 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 395 (551)
..+++|++|++++|.+.+..|... |..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSV----------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCT----------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccCCCCEEEccCCccccccchhh----------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 888999999999999886555322 578899999999999999889999999999999999999997 568
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
|..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..+. ...+..++.+++.+|++.|+|+.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88999999999999999999988899999999999999999999988776 56778899999999999999874
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=395.59 Aligned_cols=454 Identities=22% Similarity=0.206 Sum_probs=324.4
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
+++++|+|++|++++..+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+. .++...|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 58999999999999888889999999999999999999999999999999999999999988 56666799999999999
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEccCCcccccCCC--------------CCCCc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPI--------------CSNNN 151 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~~~~~ 151 (551)
+++|.+ ..+++..|..+++|++|++++|.+... |..+.++++|++|++++|.+++..+. +..+.
T Consensus 104 L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 999975 456666899999999999999999554 56788999999999999998753321 33444
Q ss_pred ccccCChhHhh--------------------------hcCCccEEEccCCcccccCCcccccCCC--CcEEECcCCccce
Q 046908 152 FAGKLPRNMGI--------------------------VLQKLIYLDMPKNIFEGDIPYSIGEMKE--LYMQDLSRNNFSG 203 (551)
Q Consensus 152 ~~~~l~~~~~~--------------------------~l~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~L~~n~l~~ 203 (551)
+.+..|..+.. ..++|+.|++++|.+.+..|..|..++. |+.|++++|++.
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~- 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN- 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-
Confidence 44433332211 1245677777777777777777777654 888888888887
Q ss_pred eCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhH----hhccCCCCCEEECCCCcc
Q 046908 204 ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILV----QLSQLKSLELIDIFENSL 279 (551)
Q Consensus 204 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l 279 (551)
.++...+..+++|++|++++|.+.+..+..|.++++|++|++++|...+......+|. .|..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 4444455678888888888888888777778888888888887665432111111111 477788888888888888
Q ss_pred cccCCCcc-cccccceeecccccccc----------------------CccceeccCccccccCCCceEEecCCcccccC
Q 046908 280 SGSLVSSF-NLSSVKHLYLQKNAITG----------------------DNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 336 (551)
Q Consensus 280 ~~~~~~~~-~~~~L~~L~L~~n~l~~----------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 336 (551)
++..+..+ ++++|++|++++|.++. .+.+.+..|.++..+++|++|++++|++.+.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 88877777 77888888887775321 23333455667778888888888888887666
Q ss_pred C-hhhhhhhch-------------hhHhhhccccCceEecCCCcCc--ccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 337 P-NELCHVSRF-------------LHRFYSNLKYMAGLDLSSNELS--GEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 337 p-~~~~~~~~l-------------~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
| ..+..++.+ ....|..+++|+.|++++|.+. +..|..+.++++|++|++++|++++..+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 5 333322222 1223444555555555555554 34566667777777777777777766666677
Q ss_pred CCCCCCEEeCCCCcCcccCC--------CCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIP--------PQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p--------~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
++++|+.|++++|++++..+ ..|..+++|++|++++|+++...+. ...+..++.+++.+|...
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 77777777777777764321 2356677777777777777654443 445666666777666543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=403.20 Aligned_cols=437 Identities=22% Similarity=0.221 Sum_probs=328.1
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
+..|.++++++. +|. ..++|++|+|++|.+++..|..|.++++|++|++++|...+.++...|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 578889999984 554 4589999999999999889999999999999999999888788778899999999999999
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCC-Cchh--hhCCCCCCEEEccCCcccccCCC-------------CCCCccc
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSF--LLQHYHLIFLDLSNNKVVGNFPI-------------CSNNNFA 153 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~Ls~n~l~~~~~~-------------~~~~~~~ 153 (551)
|.+. .+.++.|.++++|++|++++|.+.. +|.. +.++++|++|++++|.+++..+. +..+.+.
T Consensus 83 N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9855 4555689999999999999999954 5554 88999999999999998764331 3344455
Q ss_pred ccCChhHhhhc--CCccEEEccCCcccccCCcccccCCC------CcEEECcCCccceeCChhhhh--------------
Q 046908 154 GKLPRNMGIVL--QKLIYLDMPKNIFEGDIPYSIGEMKE------LYMQDLSRNNFSGELPQPIVS-------------- 211 (551)
Q Consensus 154 ~~l~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~-------------- 211 (551)
+..+..+.. + ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|++.+.++..+..
T Consensus 162 ~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 444444432 2 56666777777666666655555544 888888888766544433221
Q ss_pred ---------------------C--CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 212 ---------------------G--CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 212 ---------------------~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
+ .++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+.. |..+++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~ 315 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-----FYGLDN 315 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-----TTTCSS
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-----hcCCCC
Confidence 1 256888888888888777788888888888888888887654433 777888
Q ss_pred CCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCccccc------------
Q 046908 269 LELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGH------------ 335 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 335 (551)
|++|++++|.+++..+..+ ++++|++|++++|.++. ..+..+..+++|++|++++|.+++.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI------IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC------CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEE
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc------cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccC
Confidence 8888888888877777666 77888888888887762 2234566777777777777776531
Q ss_pred ------CChhhhhhhc----------h-hhHhhhccccCceEecCCCcCcccCCc-cccCCCCCcEEEcCCCCCC-----
Q 046908 336 ------IPNELCHVSR----------F-LHRFYSNLKYMAGLDLSSNELSGEIPR-EIGQLQNIRALNLSNNFLS----- 392 (551)
Q Consensus 336 ------~p~~~~~~~~----------l-~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~----- 392 (551)
+|.....+.. + ....+..+++|+.|++++|.+++..+. .+..+++|++|++++|.++
T Consensus 390 ~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp SCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred CCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence 1111100000 0 011235788999999999998854433 4566889999999999987
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.... ..++.+++++|....
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 34456788999999999999999999999999999999999999999987766433 677777877776544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=398.31 Aligned_cols=419 Identities=19% Similarity=0.274 Sum_probs=217.8
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCc------c---------------------------ccchhcc-
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLS------G---------------------------KVPSTLT- 52 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~---------------------------~~~~~~~- 52 (551)
.+++.|+|++|++.|.+|.+|+++++|++|+|++|.+. + ..|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999551 1 0000000
Q ss_pred ------------------CCCCCCEeeCC--CCccccccChhhhcCCCCCCEEEcccCccccc-----------------
Q 046908 53 ------------------NLTSLEYLDRF--SINFQGTISINSLANHSKLEVLLISSGSNMLQ----------------- 95 (551)
Q Consensus 53 ------------------~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 95 (551)
....++.+.+. .|.+++ +|. .+.++++|++|++++|.+.+.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 00111111111 344444 442 355555555555555554442
Q ss_pred ccCCCcc--CCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhhh-----cCC
Q 046908 96 VKTETWH--PTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGIV-----LQK 166 (551)
Q Consensus 96 ~~~~~~~--~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~~-----l~~ 166 (551)
+|. .+. .+++|++|++++|.+ ..+|..+.++++|++|++++|. +++. .+|..++.. +++
T Consensus 239 ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----------~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 239 KTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----------QLKDDWQALADAPVGEK 306 (636)
T ss_dssp TTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----------HHHHHHHHHHHSGGGGT
T ss_pred Cch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----------cchHHHHhhhccccCCC
Confidence 332 233 555555555555554 4455555555555555555554 4310 234444321 255
Q ss_pred ccEEEccCCcccccCCc--ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC-CCEE
Q 046908 167 LIYLDMPKNIFEGDIPY--SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH-LHWL 243 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 243 (551)
|+.|++++|.+. .+|. .+.++++|+.|++++|++.|.+| .+..+++|++|++++|++. .+|..+..+++ |++|
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 555555555555 4444 55555555555555555555555 3344555555555555555 44444555555 5555
Q ss_pred ecccccccCcCCCchhhHhhccC--CCCCEEECCCCcccccCCCcc--------cccccceeeccccccccCccceeccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQL--KSLELIDIFENSLSGSLVSSF--------NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
++++|.++.++ ..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|
T Consensus 383 ~Ls~N~l~~lp------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------~lp 449 (636)
T 4eco_A 383 SFAHNKLKYIP------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-------KFP 449 (636)
T ss_dssp ECCSSCCSSCC------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------SCC
T ss_pred EccCCcCcccc------hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------cCC
Confidence 55555555221 113322 255555555555555433322 2345555555555554 344
Q ss_pred cc-ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc--CCCCCcEEEcCCCC
Q 046908 314 YQ-INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG--QLQNIRALNLSNNF 390 (551)
Q Consensus 314 ~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 390 (551)
.. +..+++|++|++++|+++ .+|..+..... ..+.++++|+.|+|++|.++ .+|..+. .+++|++|++++|+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN---ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCS-BCCSSSSEETT---EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred HHHHccCCCCCEEECCCCCCC-CcCHHHhcccc---ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 33 233555555555555555 44433211000 00112235555555555555 4454444 55555555555555
Q ss_pred CCCcccccccCCCCCCEEeC------CCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 391 LSGAIPESFSNLKMTESLDL------SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 391 l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.. ..+.+..+++.+|++.|
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 554 4555555555555555 33445555555555555555555555555 233332 12455555555555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=390.08 Aligned_cols=428 Identities=18% Similarity=0.133 Sum_probs=313.9
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.-++++.++++++ .+|..+. ++|++|+|++|.+++..+.+|.++++|++|++++|.+.+. +...|.++++|++|++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeEC
Confidence 3568999999998 5665554 8999999999999988888999999999999999999854 4467999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccc-cCCC------------CCCCccc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVG-NFPI------------CSNNNFA 153 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~-~~~~------------~~~~~~~ 153 (551)
++|.+. .++++.|.++++|++|++++|.+..++ ..+.++++|++|++++|.+++ .+|. +..+.+.
T Consensus 88 s~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999854 455567999999999999999997776 679999999999999999875 3343 4445555
Q ss_pred ccCChhHhhhcCC----ccEEEccCCcccccCCcccccCCCCcEEECcCCccce--------------------------
Q 046908 154 GKLPRNMGIVLQK----LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSG-------------------------- 203 (551)
Q Consensus 154 ~~l~~~~~~~l~~----L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------- 203 (551)
+..+..+.. +++ +..+++++|.+.+..+..+... +|+.|++++|.+.+
T Consensus 167 ~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 167 TITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp EECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 433333322 332 3356666666665544444433 67777777665431
Q ss_pred --------------------------------eCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccccccc
Q 046908 204 --------------------------------ELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFS 251 (551)
Q Consensus 204 --------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 251 (551)
.+|. +..+++|+.|++++|.+... + .+..+++|++|++++|.+.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCS
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCc
Confidence 0111 22344555555555555332 2 4444555555555555442
Q ss_pred CcCCC--------------chhhHhhccCCCCCEEECCCCcccccC--CCcc-cccccceeeccccccccCccceeccCc
Q 046908 252 GKMDD--------------ANILVQLSQLKSLELIDIFENSLSGSL--VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPY 314 (551)
Q Consensus 252 ~~~~~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~ 314 (551)
.++.. ......+..+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .+|.
T Consensus 321 ~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~ 393 (606)
T 3vq2_A 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-------IMSA 393 (606)
T ss_dssp SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-------EECC
T ss_pred ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-------cchh
Confidence 21100 000012556677777777777776653 3334 6777777777777766 5666
Q ss_pred cccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCC-
Q 046908 315 QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSG- 393 (551)
Q Consensus 315 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 393 (551)
.+..+++|++|++++|++.+..|.. .|..+++|+.|++++|.+++..|..+.++++|++|++++|++++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFS----------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTT----------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred hccCCCCCCeeECCCCccCCccChh----------hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 7777888888888888877555522 25788999999999999998899999999999999999999997
Q ss_pred cccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCC
Q 046908 394 AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHEL 463 (551)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~ 463 (551)
..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|. ...+..++.+++.+|...
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 4788899999999999999999999999999999999999999999988665 566778888999988765
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=387.00 Aligned_cols=418 Identities=18% Similarity=0.173 Sum_probs=352.4
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|+++++.+.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+. +...+..+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-TTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC-CCcccccccc
Confidence 578999999999999999988889999999999999999999988889999999999999999998853 4345899999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCC----CEEEccCCcccccCCCCCCC------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHL----IFLDLSNNKVVGNFPICSNN------ 150 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~------ 150 (551)
|++|++++|.+.....+..|..+++|++|++++|.+..++ ..+..+++| ++|++++|.+.+..|.....
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 9999999998665333456899999999999999997664 466667777 78999988877544421100
Q ss_pred ---------------------------------------------------------------cccccCChhHhhhcCCc
Q 046908 151 ---------------------------------------------------------------NFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 151 ---------------------------------------------------------------~~~~~l~~~~~~~l~~L 167 (551)
.+.+.++..+ ..+++|
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L 284 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNV 284 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTC
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcc
Confidence 1222233333 347899
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|++|++++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 99999999998 577788888 9999999999998 78863 588999999999998766554 7899999999999
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEE
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLL 326 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~ 326 (551)
|.+++.. ..+..+..+++|++|++++|.+.+..+....+++|++|++++|.++. ..+ ..+..+++|++|+
T Consensus 357 n~l~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 357 NGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp SCCBEEE---EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES------CTTSCTTTTCTTCCEEE
T ss_pred CccCccc---cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc------ccchhhhhcCCCCCEEe
Confidence 9987532 22556889999999999999999887763389999999999998872 333 4688899999999
Q ss_pred ecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 327 LRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
+++|.+.+..|.. |.++++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 428 l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 428 ISHTHTRVAFNGI-----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp CTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcCCcccccchhh-----------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 9999999777665 477889999999999997 5788999999999999999999998889999999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQF 449 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~ 449 (551)
+.|++++|++++..|..|..+++|+.+++++|+++|.+|....+
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99999999999888888999999999999999999999875443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=396.91 Aligned_cols=419 Identities=19% Similarity=0.245 Sum_probs=288.7
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEc-ccCcCccccchhc----------------------------------
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDI-SNNQLSGKVPSTL---------------------------------- 51 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~---------------------------------- 51 (551)
.+++.|+|++|++.|.+|.+|+++++|+.|+| ++|.+++..|-.-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887654422110
Q ss_pred -----------------cCCCCCCEeeCC--CCccccccChhhhcCCCCCCEEEcccCccccc-----------------
Q 046908 52 -----------------TNLTSLEYLDRF--SINFQGTISINSLANHSKLEVLLISSGSNMLQ----------------- 95 (551)
Q Consensus 52 -----------------~~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 95 (551)
.....++.+.+. .|.+.+ +|. .+.++++|++|++++|.+.+.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 111223333333 256665 553 477788888888888776652
Q ss_pred ccCCC-ccCCCCccEEEccCCCC-CCCchhhhCCCCCCEEEccCCc-ccccCCCCCCCcccccCChhHhh------hcCC
Q 046908 96 VKTET-WHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNK-VVGNFPICSNNNFAGKLPRNMGI------VLQK 166 (551)
Q Consensus 96 ~~~~~-~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~l~~~~~~------~l~~ 166 (551)
+|... |..+++|++|++++|.+ ..+|..+.++++|++|++++|. +++. .+|..++. .+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~-----------~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA-----------QLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH-----------HHHHHHHHHHHCTTTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc-----------cchHHHHhhhhcccccCC
Confidence 44432 33778888888888876 6777778888888888888876 6520 24544432 2347
Q ss_pred ccEEEccCCcccccCCc--ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCC-CCEE
Q 046908 167 LIYLDMPKNIFEGDIPY--SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTH-LHWL 243 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 243 (551)
|+.|++++|.+. .+|. .+.++++|+.|++++|++. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 888888888887 6666 7778888888888888877 777 4566778888888888777 56667777777 8888
Q ss_pred ecccccccCcCCCchhhHhhccCC--CCCEEECCCCcccccCCCcc------cccccceeeccccccccCccceeccCcc
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLK--SLELIDIFENSLSGSLVSSF------NLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
++++|.++.++ ..+..++ +|+.|++++|.+.+..+... ..++|++|++++|.++ .+|..
T Consensus 625 ~Ls~N~L~~lp------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------~lp~~ 691 (876)
T 4ecn_A 625 GFSHNKLKYIP------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-------KFPTE 691 (876)
T ss_dssp ECCSSCCCSCC------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------SCCHH
T ss_pred ECcCCCCCcCc------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-------ccCHH
Confidence 88888776332 2244443 37888888888776554322 3457788888888776 56655
Q ss_pred c-cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcccc--CCCCCcEEEcCCCCCC
Q 046908 316 I-NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIG--QLQNIRALNLSNNFLS 392 (551)
Q Consensus 316 ~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~ 392 (551)
+ ..+++|+.|++++|++. .+|..+..... ....++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+++
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKD---GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhcccc---ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC
Confidence 4 36778888888888777 66654421110 00123457788888888777 6677765 7778888888888887
Q ss_pred CcccccccCCCCCCEEeCCC------CcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 393 GAIPESFSNLKMTESLDLSH------NRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~------n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|.. ..+.+..+++++|++..
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 5 566677778888887765 667777777777788888888888887 445543 23567777777777654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=380.22 Aligned_cols=425 Identities=18% Similarity=0.167 Sum_probs=304.1
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..|.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+ ++...+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence 478888888888887778888888888888888888887777888888888888888888874 4556688888888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCC-CCCCc-hhhhCCCCCCEEEccCCcccccCCCC------------CCCcc
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCH-LHVIP-SFLLQHYHLIFLDLSNNKVVGNFPIC------------SNNNF 152 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~------------~~~~~ 152 (551)
+++|.+.....+..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.+++..|.. ..+.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 888876543334467888888888888887 46666 46788888888888888887654431 11111
Q ss_pred cccCChhHhhhcCCccEEEccCCcccccC--C-cccccCCCCcEEECcCCccceeCChhh---hhCCCCCCEEECcCCcc
Q 046908 153 AGKLPRNMGIVLQKLIYLDMPKNIFEGDI--P-YSIGEMKELYMQDLSRNNFSGELPQPI---VSGCVALDLFDLSNNNF 226 (551)
Q Consensus 153 ~~~l~~~~~~~l~~L~~L~L~~n~~~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l 226 (551)
+.+|...+..+++|+.|++++|.+.+.. + .....+++|+.|++++|.+.+..+..+ +..+++|+.+++++|.+
T Consensus 185 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 -AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp -TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred -cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 1345555555778888888888777542 1 123346677777777777764433332 23456777777777765
Q ss_pred cccCC------cccCCC-----------------------------CCCCEEecccccccCcCCCchhhHhh-ccCCCCC
Q 046908 227 FGQIF------PKYMNL-----------------------------THLHWLYLDNNHFSGKMDDANILVQL-SQLKSLE 270 (551)
Q Consensus 227 ~~~~~------~~~~~l-----------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~-~~l~~L~ 270 (551)
.+... ..+..+ ++|+.|++++|.+.. +|..+ ..+++|+
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~------ip~~~~~~l~~L~ 337 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL------VPCSFSQHLKSLE 337 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC------CCHHHHHHCTTCC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc------CCHHHHhcCcccc
Confidence 54211 112223 355666666665542 33333 5678888
Q ss_pred EEECCCCcccccCC---Ccc-cccccceeeccccccccCccceeccC---ccccccCCCceEEecCCcccccCChhhhhh
Q 046908 271 LIDIFENSLSGSLV---SSF-NLSSVKHLYLQKNAITGDNKFFGRIP---YQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 271 ~L~l~~n~l~~~~~---~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
+|++++|.+++..+ ..+ .+++|++|++++|.++ .++ ..+..+++|++|++++|+++ .+|..+
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--- 406 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-------SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--- 406 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-------CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC---
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCccc-------ccccchhhhhcCCCCCEEECCCCCCc-cCChhh---
Confidence 88888888876542 223 6778888888888776 333 34677788888888888887 566543
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 423 (551)
..+++|++|++++|.++ .+|..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. .
T Consensus 407 --------~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 407 --------QWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp --------CCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred --------cccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 55677888888888877 344333 257888888888887543 57899999999999998 6676 4
Q ss_pred CCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 424 TGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 424 ~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
..++.|++|++++|++++.+|. ...+..+..+++.+|++.|+|+
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6789999999999999998886 5678889999999999999997
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-45 Score=380.06 Aligned_cols=431 Identities=21% Similarity=0.198 Sum_probs=332.2
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
++|++|+|++|++++..|.+|.++++|++|+|++|.+++..|++|.++++|++|++++|.+. .++.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence 57888888888888777778888888888888888888777888888888888888888877 34432 788888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCC--CEEEccCCcc--cccCCC-------------CCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL--IFLDLSNNKV--VGNFPI-------------CSN 149 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L--~~L~Ls~n~l--~~~~~~-------------~~~ 149 (551)
+++|.+.....+..|..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|. +..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 888876553333467888888888888888855 345666667 8888888877 443332 122
Q ss_pred CcccccCChhHhhhcCCccEEEccCCc-------ccccCCcccccCCCCcEEECcCCccceeCChhhhh--CCCCCCEEE
Q 046908 150 NNFAGKLPRNMGIVLQKLIYLDMPKNI-------FEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVS--GCVALDLFD 220 (551)
Q Consensus 150 ~~~~~~l~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~ 220 (551)
+.+.+.++...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+..+..... ..++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 334445555555567888888888886 555555 6788899999999988876543332221 146899999
Q ss_pred CcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccccee
Q 046908 221 LSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295 (551)
Q Consensus 221 L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 295 (551)
+++|++.+..|..+ ..+++|+.+++++|.+ ..+.. .+.. +..-.+|+.|++++|.+...... ..+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~-~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS-YIYE-IFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH-HHHH-HHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchh-hhhc-ccccCceeEEEcCCCccccccch-hhCCcccEE
Confidence 99999998888887 8999999999999988 32211 1211 22236899999999998765421 268999999
Q ss_pred eccccccccCccceeccCccccccCCCceEEecCCcccc--cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCc
Q 046908 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPR 373 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 373 (551)
++++|.+++ .+|..+..+++|++|++++|++++ .+|. .+..+++|+.|++++|.+++.+|.
T Consensus 330 ~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 330 DFSNNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAE-----------MTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp ECCSSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHH-----------HHTTCTTCCEEECCSSCCBCCGGG
T ss_pred EeECCccCh------hhhhhhccCCCCCEEEccCCccCccccchH-----------HHhhCCCCCEEECCCCcCCccccc
Confidence 999998873 578888999999999999999984 2222 257889999999999999975665
Q ss_pred -cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 374 -EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 374 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
.+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. ...+..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 488899999999999999877776654 79999999999999 7787777999999999999999976655 566778
Q ss_pred cCCcccCCCCCCCCccc
Q 046908 452 FDESSYTGNHELCGSLI 468 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~ 468 (551)
+..+++.+|++.|+|+.
T Consensus 470 L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred ccEEECcCCCCcccCCc
Confidence 88999999999999874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=373.59 Aligned_cols=452 Identities=19% Similarity=0.171 Sum_probs=330.6
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
++++|||++|+|+++.+.+|.++++|++|+|++|.|+++.+++|.++++|++|+|++|.+. .++...|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 7999999999999888899999999999999999999888899999999999999999988 567788999999999999
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCC--CchhhhCCCCCCEEEccCCcccccCCC----------------CCC
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV--IPSFLLQHYHLIFLDLSNNKVVGNFPI----------------CSN 149 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~Ls~n~l~~~~~~----------------~~~ 149 (551)
++|.+ ..+++..|..+++|++|++++|.+.. +|..+..+++|++|++++|.+++..+. +..
T Consensus 132 s~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99975 45666679999999999999999954 577889999999999999988754332 111
Q ss_pred Ccccc-----------------------cCChhHhhhcCCccEEEccCCc------------------------------
Q 046908 150 NNFAG-----------------------KLPRNMGIVLQKLIYLDMPKNI------------------------------ 176 (551)
Q Consensus 150 ~~~~~-----------------------~l~~~~~~~l~~L~~L~L~~n~------------------------------ 176 (551)
+.+.. .++...+..++.++...+..+.
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 11111 0111111122222222211000
Q ss_pred c---cccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC-------------------ccc
Q 046908 177 F---EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF-------------------PKY 234 (551)
Q Consensus 177 ~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~ 234 (551)
. ....+..+..+.+++.+++.++.+. .++. +.....++.|++.+|.+..... ...
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hcccccchhhhhhhhcccccccccccccc-cccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0 0011122333445555555555544 2222 1223445555554444332221 223
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceecc-C
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRI-P 313 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~ 313 (551)
..+++|+.+++++|.+.... ..+..+..+.+|+++++..+...........+++|+.+++..+.... .. +
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~---~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~------~~~~ 438 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKG---CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEF 438 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEE---ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES------TTSS
T ss_pred ccccccccchhhcccccccc---ccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc------cccc
Confidence 45677888888877765422 23344667778888888888777665554478888888888776542 22 2
Q ss_pred ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCC
Q 046908 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
..+..+++++.+++++|.+.+..|.. +..++.++.|++++|.+. +..|..|..+++|++|+|++|+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~-----------~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGI-----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT-----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccccccccccccccc-----------cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 44677889999999999988665554 477889999999999754 457888999999999999999999
Q ss_pred CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccC-CccCCcccCCCCCCCCcccc-
Q 046908 393 GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQF-ATFDESSYTGNHELCGSLIR- 469 (551)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~-~~~~~~~~~~n~~~c~~~~~- 469 (551)
+..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|. ...+ ..++.+++.+|||.|+|...
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 98899999999999999999999988888999999999999999999998887 3334 57888999999999999743
Q ss_pred -----------------CCCCCCCCCCCCCCC
Q 046908 470 -----------------KKCSSALKPPATPTE 484 (551)
Q Consensus 470 -----------------~~c~~~~~~~~~~~~ 484 (551)
..|..|....+.+..
T Consensus 588 ~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~ 619 (635)
T 4g8a_A 588 FLQWIKDQRQLLVEVERMECATPSDKQGMPVL 619 (635)
T ss_dssp HHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGG
T ss_pred HHHHHHhCCCccCCCCCceeCCchHHCCCEee
Confidence 457777766665533
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=375.77 Aligned_cols=358 Identities=17% Similarity=0.235 Sum_probs=304.4
Q ss_pred cCcCccccchhccCCCCCCEeeCCCCccccc-----------------cChhhhc--CCCCCCEEEcccCcccccccCCC
Q 046908 40 NNQLSGKVPSTLTNLTSLEYLDRFSINFQGT-----------------ISINSLA--NHSKLEVLLISSGSNMLQVKTET 100 (551)
Q Consensus 40 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~ 100 (551)
+|.+++ +|..|+++++|++|++++|.+.+. +| ..+. ++++|++|++++|.+.+.+|. .
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~-~ 268 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPT-F 268 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCT-T
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChH-H
Confidence 578887 899999999999999999999874 55 3466 899999999999988777764 6
Q ss_pred ccCCCCccEEEccCCC-CC--CCchhhhCC------CCCCEEEccCCcccccCCCCCCCcccccCCh--hHhhhcCCccE
Q 046908 101 WHPTSQLKVLKLSDCH-LH--VIPSFLLQH------YHLIFLDLSNNKVVGNFPICSNNNFAGKLPR--NMGIVLQKLIY 169 (551)
Q Consensus 101 ~~~l~~L~~L~l~~n~-l~--~l~~~~~~~------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~--~~~~~l~~L~~ 169 (551)
+..+++|++|++++|+ ++ .+|..+..+ ++|++|++++|.++ .+|. .+. .+++|+.
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------------~ip~~~~l~-~l~~L~~ 334 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------------TFPVETSLQ-KMKKLGM 334 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------------SCCCHHHHT-TCTTCCE
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------------ccCchhhhc-cCCCCCE
Confidence 8999999999999998 76 588888776 89999999999988 6776 444 4899999
Q ss_pred EEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCC-CCEEECcCCcccccCCcccCCCC--CCCEEecc
Q 046908 170 LDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVA-LDLFDLSNNNFFGQIFPKYMNLT--HLHWLYLD 246 (551)
Q Consensus 170 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~ 246 (551)
|++++|.+.+.+| .+..+++|+.|++++|++. .+|..+ ..+++ |++|++++|.++ .+|..+..++ +|++|+++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh-hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 9999999998888 8999999999999999998 888775 55888 999999999998 6677777654 89999999
Q ss_pred cccccCcCCCchhhHhhc-------cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccc
Q 046908 247 NNHFSGKMDDANILVQLS-------QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+|.+.+..+. .+. .+++|++|++++|.+++.+...+ .+++|++|++++|.++ .+|.....
T Consensus 411 ~N~l~~~~p~-----~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-------~i~~~~~~ 478 (636)
T 4eco_A 411 YNEIGSVDGK-----NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-------EIPKNSLK 478 (636)
T ss_dssp SSCTTTTTTC-----SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-------BCCSSSSE
T ss_pred CCcCCCcchh-----hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-------CcCHHHhc
Confidence 9999875443 355 77899999999999997766666 6899999999999987 56654332
Q ss_pred --------cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEc----
Q 046908 319 --------LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNL---- 386 (551)
Q Consensus 319 --------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---- 386 (551)
+++|++|++++|+++ .+|..+. ...+++|+.|+|++|.+++ +|..+..+++|++|++
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFR---------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhh---------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 339999999999998 7776641 0378899999999999996 8999999999999999
Q ss_pred --CCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 387 --SNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 387 --~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
++|++.+.+|..+.++++|++|++++|++. .+|..+. ++|+.|++++|++.+...
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 568888899999999999999999999994 7787766 799999999999876543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=378.96 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=312.2
Q ss_pred CCCEEEccc--CcCccccchhccCCCCCCEeeCCCCccccc-----------------cChhh-hcCCCCCCEEEcccCc
Q 046908 32 HLKVLDISN--NQLSGKVPSTLTNLTSLEYLDRFSINFQGT-----------------ISINS-LANHSKLEVLLISSGS 91 (551)
Q Consensus 32 ~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~-~~~l~~L~~L~l~~n~ 91 (551)
.++.+.+.. |.+++ +|..|+++++|++|+|++|.+.+. +|... |.++++|++|++++|.
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~ 502 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred chhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence 344444443 77886 888999999999999999999872 55332 3389999999999998
Q ss_pred ccccccCCCccCCCCccEEEccCCC-CC--CCchhhhCCC-------CCCEEEccCCcccccCCCCCCCcccccCCh--h
Q 046908 92 NMLQVKTETWHPTSQLKVLKLSDCH-LH--VIPSFLLQHY-------HLIFLDLSNNKVVGNFPICSNNNFAGKLPR--N 159 (551)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~-------~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~--~ 159 (551)
+.+.+| ..+..+++|++|++++|+ ++ .+|..+..++ +|++|++++|.++ .+|. .
T Consensus 503 l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------------~ip~~~~ 568 (876)
T 4ecn_A 503 NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------------EFPASAS 568 (876)
T ss_dssp TCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------------BCCCHHH
T ss_pred CCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------------ccCChhh
Confidence 777777 468899999999999998 76 4887776665 9999999999988 6777 4
Q ss_pred HhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCC-CCEEECcCCcccccCCcccCCCC
Q 046908 160 MGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVA-LDLFDLSNNNFFGQIFPKYMNLT 238 (551)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~ 238 (551)
+. .+++|+.|++++|.+. .+| .|..+++|+.|++++|++. .+|..+ ..+++ |+.|++++|.+. .+|..+..++
T Consensus 569 l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 569 LQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhhhccc
Confidence 44 4899999999999998 677 8999999999999999998 888775 45777 999999999998 6677777665
Q ss_pred C--CCEEecccccccCcCCCchhhHhhc--cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 239 H--LHWLYLDNNHFSGKMDDANILVQLS--QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 239 ~--L~~L~L~~n~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
. |+.|++++|.+.+..+. ++..+. .+++|+.|++++|.++..+...+ .+++|++|+|++|.++ .+|
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-------~ip 713 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRN--ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-------SIP 713 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSS--CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-------CCC
T ss_pred cCCCCEEECcCCcCCCcccc--chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-------ccC
Confidence 4 99999999999875442 121222 44589999999999997666666 7899999999999987 566
Q ss_pred ccccc--------cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEE
Q 046908 314 YQINE--------LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALN 385 (551)
Q Consensus 314 ~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (551)
..+.. +++|+.|++++|+++ .+|..+. ...+++|+.|+|++|.+++ +|..+..+++|+.|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~---------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR---------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhh---------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 55433 349999999999998 7776641 0378899999999999996 788999999999999
Q ss_pred cCC------CCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCC-ccCCccCCcccC
Q 046908 386 LSN------NFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK-EQFATFDESSYT 458 (551)
Q Consensus 386 L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~ 458 (551)
|++ |++.+.+|..+.++++|+.|++++|++ +.+|..+. ++|+.|++++|++....+.. ..........+.
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~ 859 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence 976 788889999999999999999999999 58888765 69999999999997655431 111123344555
Q ss_pred CCCCCC--Ccc
Q 046908 459 GNHELC--GSL 467 (551)
Q Consensus 459 ~n~~~c--~~~ 467 (551)
+|+..+ +|+
T Consensus 860 ~n~~~~I~gC~ 870 (876)
T 4ecn_A 860 YDKTQDIRGCD 870 (876)
T ss_dssp CCTTSEEESCG
T ss_pred CCCccccCCCC
Confidence 665554 665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=362.15 Aligned_cols=430 Identities=20% Similarity=0.184 Sum_probs=260.7
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+...+++|+++|++++ +|..+. ++|++|+|++|.+++..+++|.++++|++|++++|.+.+. +...|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEE
Confidence 3344566666666663 443332 5666666666666655555666666666666666665533 23445666666666
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCc--hhhhCCCCCCEEEccCCcccc---------------------
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVG--------------------- 142 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~Ls~n~l~~--------------------- 142 (551)
++++|.+. .++.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+++
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 66666543 34432 4566666666666664433 456666666666666665542
Q ss_pred ----cCCC-------------CCCCcccccCChhHhhhcCCccEEEccCCc-----ccccCCcccccCCCCcEEECcCCc
Q 046908 143 ----NFPI-------------CSNNNFAGKLPRNMGIVLQKLIYLDMPKNI-----FEGDIPYSIGEMKELYMQDLSRNN 200 (551)
Q Consensus 143 ----~~~~-------------~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~-----~~~~~~~~~~~l~~L~~L~L~~n~ 200 (551)
..|. +..+.+.+.++...+..+++|+.+++++|. +.+ ....+..+++|+.++++++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCc
Confidence 1111 001111111222122223333333333332 010 11123334444444444433
Q ss_pred ccee----CChhhhhCCCCCCEEECcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 201 FSGE----LPQPIVSGCVALDLFDLSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 201 l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.+. ++... ...+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ..+ . .....+....+|+.
T Consensus 261 l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p-~-~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 261 TTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFS-K-EALYSVFAEMNIKM 335 (562)
T ss_dssp ECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSC-H-HHHHHHHHTCCCSE
T ss_pred CcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecC-h-hhhhhhhccCcceE
Confidence 3221 11111 23478888888888887777665 5566666666666655 111 1 11122223367889
Q ss_pred EECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhh
Q 046908 272 IDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFY 351 (551)
Q Consensus 272 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~ 351 (551)
|++++|.+...... ..+++|++|++++|.+++ .+|..+..+++|++|++++|++++ ++.. ...|
T Consensus 336 L~l~~n~~~~~~~~-~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~--------~~~~ 399 (562)
T 3a79_B 336 LSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKN-FFKV--------ALMT 399 (562)
T ss_dssp EEEESSCCCCCCCC-SSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCB-TTHH--------HHTT
T ss_pred EEccCCCcccccCc-cCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCC-cccc--------hhhh
Confidence 99998887654321 157889999999998873 567778888999999999998873 2211 0125
Q ss_pred hccccCceEecCCCcCcccCCc-cccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCC
Q 046908 352 SNLKYMAGLDLSSNELSGEIPR-EIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 430 (551)
.++++|+.|++++|.+++.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 7788899999999999874554 578888999999999998876665543 68999999999988 6676666888999
Q ss_pred eEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 431 NFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 431 ~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+|++++|++++..+. ...+..+..+++.+||+.|+|+.
T Consensus 477 ~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999999866655 56677888888999999998864
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=361.62 Aligned_cols=410 Identities=18% Similarity=0.206 Sum_probs=308.0
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|++++..|++|.++++|++|+|++|.+++..+..|+++++|++|++++|.+.+......+.++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 47889999999999999998888999999999999999999998888889999999999999999885433346889999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCC-CchhhhC------------------------CCCCCEEEcc
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSFLLQ------------------------HYHLIFLDLS 136 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~------------------------~~~L~~L~Ls 136 (551)
|++|++++|.....++...|..+++|++|++++|.+.. .|..+.. +++|++|+++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 99999999987777877788899999999999998854 4555444 4566666666
Q ss_pred CCcccccC--CC-------------CCCCcccccCChhH---hhhcCCccEEEccCCcccccC------CcccccCCCCc
Q 046908 137 NNKVVGNF--PI-------------CSNNNFAGKLPRNM---GIVLQKLIYLDMPKNIFEGDI------PYSIGEMKELY 192 (551)
Q Consensus 137 ~n~l~~~~--~~-------------~~~~~~~~~l~~~~---~~~l~~L~~L~L~~n~~~~~~------~~~~~~l~~L~ 192 (551)
+|.+++.. |. +..+.+.+..+..+ ...+++|+.+++++|.+.+.. ...+..+.+++
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 66665321 00 00011111111111 012334444444444443321 11233445555
Q ss_pred EEECcCCcccee-----CChhhhhCCCCCCEEECcCCcccccCCccc-CCCCCCCEEecccccccCcCCCchhh---Hhh
Q 046908 193 MQDLSRNNFSGE-----LPQPIVSGCVALDLFDLSNNNFFGQIFPKY-MNLTHLHWLYLDNNHFSGKMDDANIL---VQL 263 (551)
Q Consensus 193 ~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~ 263 (551)
.|++.++.+... ++ ..+....+|+.|++++|++.. +|..+ ..+++|++|++++|.+++ .++ ..+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~ 357 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVE-----EYLKNSACK 357 (549)
T ss_dssp EEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCH-----HHHHHHTCT
T ss_pred cccccccccchhhhcccch-hhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCcccc-----ccccchhhh
Confidence 555555544311 11 122335789999999999874 44444 679999999999999986 332 236
Q ss_pred ccCCCCCEEECCCCcccccCC--Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 264 SQLKSLELIDIFENSLSGSLV--SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~--~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
..+++|++|++++|.+++..+ ..+ .+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~ 429 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-------CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-------cCChhhcccccccEEECCCCCcc-cccchh
Confidence 789999999999999987653 334 7999999999999998 78888889999999999999987 445432
Q ss_pred hhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCC
Q 046908 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420 (551)
Q Consensus 341 ~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 420 (551)
.++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus 430 -------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 430 -------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp -------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred -------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 257999999999998643 57899999999999999 4555 4578999999999999998888
Q ss_pred CCCCCCCCCCeEECCCCccccCCCC
Q 046908 421 PQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 421 ~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
..+..+++|+.|++++|++.|.+|.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcCcccCEEEecCCCccCCCcc
Confidence 8899999999999999999998874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=344.38 Aligned_cols=385 Identities=20% Similarity=0.241 Sum_probs=274.1
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
-+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 356788888887 4554 33 7899999999999888888899999999999998888777777778888888888888
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCC-Cchh--hhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHV-IPSF--LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
+|.+.. ..+..|..+++|++|++++|.+.. ++.. +..+++|++|++++|.+++ ..|..++..++
T Consensus 88 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~l~ 154 (455)
T 3v47_A 88 YNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK------------IQPASFFLNMR 154 (455)
T ss_dssp TCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS------------CCCCGGGGGCT
T ss_pred CCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc------------cCcccccCCCC
Confidence 777443 344467778888888888888754 3333 6777777788877777762 22444344567
Q ss_pred CccEEEccCCcccccCCcccccC--CCCcEEECcCCccceeCChhhh--------hCCCCCCEEECcCCcccccCCcccC
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEM--KELYMQDLSRNNFSGELPQPIV--------SGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
+|++|++++|.+.+..+..+..+ .+|+.|++++|.+. .++...+ ..+++|++|++++|++.+..+..+.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 77777777777776666666555 56677777777665 3332211 1234455555555544443333332
Q ss_pred C---CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc---cccccceeeccccccccCccce
Q 046908 236 N---LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF---NLSSVKHLYLQKNAITGDNKFF 309 (551)
Q Consensus 236 ~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~ 309 (551)
. .++|+.|++++|...+.. +..+.+.......+ ..++|++|++++|.++.
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----- 289 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSS-------------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----- 289 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCC-------------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-----
T ss_pred ccccccceeeEeeccccccccc-------------------cchhhhccCcccccccccccCceEEEecCccccc-----
Confidence 1 144444444444332210 00111111122222 34689999999998763
Q ss_pred eccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCC
Q 046908 310 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN 389 (551)
Q Consensus 310 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 389 (551)
..|..+..+++|++|++++|++.+..|.. |.++++|+.|++++|.+++..+..+.++++|++|++++|
T Consensus 290 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 290 -LLKSVFSHFTDLEQLTLAQNEINKIDDNA-----------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp -ECTTTTTTCTTCCEEECTTSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred -cchhhcccCCCCCEEECCCCcccccChhH-----------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 56777888999999999999998666655 467788999999999998888889999999999999999
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKE 447 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~ 447 (551)
++++..|..|.++++|++|++++|++++..+..|..+++|++|++++|+++|.+|...
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 9998888899999999999999999997777788999999999999999999988643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=357.31 Aligned_cols=408 Identities=20% Similarity=0.185 Sum_probs=320.3
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|+|++|++++..|++|.++++|++|+|++|.++ .+|.. .+++|++|++++|.+.+...+..+..+++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 3678999999999999999888999999999999999999999 56655 89999999999999986433367999999
Q ss_pred CCEEEcccCcccccccCCCccCCCCc--cEEEccCCCC---CCCchhhhCCC-CCCEEEccCCcccccCCCCCC------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQL--KVLKLSDCHL---HVIPSFLLQHY-HLIFLDLSNNKVVGNFPICSN------ 149 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~l---~~l~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~------ 149 (551)
|++|++++|.+.. ..+..+++| ++|++++|.+ ...|..+..+. +...+++++|.+.+..+....
T Consensus 117 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 117 LKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp CCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred ceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 9999999988654 246667777 9999999998 34455554433 122344555554443332110
Q ss_pred -------C-------cccccCChhHhhhcCCccEEEccCCcccccCCcccc---cCCCCcEEECcCCccceeCChhhh--
Q 046908 150 -------N-------NFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG---EMKELYMQDLSRNNFSGELPQPIV-- 210 (551)
Q Consensus 150 -------~-------~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~-- 210 (551)
+ .+.+.+| . +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|++.|.+|..++
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-h-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence 0 1222333 2 33488999999999988754322221 256999999999999988998774
Q ss_pred --hCCCCCCEEECcCCcccccCC-cccCCC---CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCC
Q 046908 211 --SGCVALDLFDLSNNNFFGQIF-PKYMNL---THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284 (551)
Q Consensus 211 --~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 284 (551)
..+++|+.+++++|.+ ..| ..+..+ .+|+.|++++|.+..... +..+++|++|++++|.+++..+
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTT
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCccChhhh
Confidence 6688999999999988 333 344333 679999999999865321 2678999999999999999777
Q ss_pred Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecC
Q 046908 285 SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLS 363 (551)
Q Consensus 285 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls 363 (551)
..+ .+++|++|++++|.++.. +.+|..+..+++|++|++++|++.+.+|... |..+++|+.|+++
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~----------~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKEL----SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD----------CSWTKSLLSLNMS 407 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBH----HHHHHHHTTCTTCCEEECCSSCCBCCGGGCS----------CCCCTTCCEEECC
T ss_pred hhhccCCCCCEEEccCCccCcc----ccchHHHhhCCCCCEEECCCCcCCcccccch----------hccCccCCEEECc
Confidence 777 899999999999998721 1345678899999999999999996576542 5778999999999
Q ss_pred CCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC-CCCCCCCCCeEECCCCccccC
Q 046908 364 SNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP-QLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~ 442 (551)
+|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++. +|. .+..+++|+++++++|+++|.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9999887776654 79999999999999 677767799999999999999995 555 489999999999999999987
Q ss_pred CCC
Q 046908 443 TPD 445 (551)
Q Consensus 443 ~~~ 445 (551)
++.
T Consensus 484 c~~ 486 (520)
T 2z7x_B 484 CPR 486 (520)
T ss_dssp HHH
T ss_pred CCc
Confidence 753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=331.72 Aligned_cols=383 Identities=20% Similarity=0.184 Sum_probs=287.2
Q ss_pred CCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEc
Q 046908 33 LKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKL 112 (551)
Q Consensus 33 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 112 (551)
-+.++.+++.++ .+|. + .++|++|++++|.+.+.. ...+..+++|++|++++|.....+++..|..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 356788888888 5565 3 278999999999988543 4568899999999999988777777778899999999999
Q ss_pred cCCCCCCC-chhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc-cccCCC
Q 046908 113 SDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS-IGEMKE 190 (551)
Q Consensus 113 ~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~ 190 (551)
++|.+..+ |..+.++++|++|++++|.+++.. .+...+..+++|++|++++|.+.+..|.. +.++++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV-----------LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH-----------HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccc-----------cCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 99998665 667888889999999988876311 11122334677888888888777766655 677777
Q ss_pred CcEEECcCCccceeCChhhhhCC--CCCCEEECcCCcccccCCcc--------cCCCCCCCEEecccccccCcCCCchhh
Q 046908 191 LYMQDLSRNNFSGELPQPIVSGC--VALDLFDLSNNNFFGQIFPK--------YMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 191 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
|++|++++|++.+..+..+ ..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+ ..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~ 229 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-----SMA 229 (455)
T ss_dssp CCEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----HHH
T ss_pred ccEEeCCCCcccccChhhh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----cch
Confidence 7777777777764434332 222 56777777777766544332 2245667777777776654 333
Q ss_pred HhhccC---CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc--ccCCCceEEecCCccccc
Q 046908 261 VQLSQL---KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGH 335 (551)
Q Consensus 261 ~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~ 335 (551)
..+... ++|+.|++++|...+.......++. ..+..+. ..++|++|++++|.+.+.
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-------------------PDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC-------------------CCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred hhhhccccccceeeEeeccccccccccchhhhcc-------------------CcccccccccccCceEEEecCcccccc
Confidence 333332 6666666666655443211111111 1111222 247899999999999977
Q ss_pred CChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcC
Q 046908 336 IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 336 ~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 415 (551)
.|..+ ..+++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|++
T Consensus 291 ~~~~~-----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 291 LKSVF-----------SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp CTTTT-----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred chhhc-----------ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 77654 6788999999999999988899999999999999999999988889999999999999999999
Q ss_pred cccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 416 SGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 416 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
++..|..|..+++|++|++++|++++..+. ...+..++.+++.+|++.|+|+
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 998899999999999999999999987765 4677899999999999999997
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=345.05 Aligned_cols=414 Identities=21% Similarity=0.204 Sum_probs=315.7
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+|+++++|++|||++|+|+++.+.+|.++++|++|+|++|++++..+++|.++++|++|++++|++.+ ++...|.++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcc
Confidence 58899999999999999998889999999999999999999998888899999999999999999984 55567999999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCC----CCEEEccCCcccccCCC----------
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYH----LIFLDLSNNKVVGNFPI---------- 146 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~----L~~L~Ls~n~l~~~~~~---------- 146 (551)
|++|++++|.+.....+..+..+++|++|++++|++..++ ..+..+.+ ...++++.|.+....+.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 9999999998765545557888999999999999997654 33332222 23455555544321111
Q ss_pred ----------------------------------------CCCCcccc-------------------cCChhHhhhcCCc
Q 046908 147 ----------------------------------------CSNNNFAG-------------------KLPRNMGIVLQKL 167 (551)
Q Consensus 147 ----------------------------------------~~~~~~~~-------------------~l~~~~~~~l~~L 167 (551)
.....+.+ .+. ..+....++
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l 308 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII-DLFNCLTNV 308 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT-TTTGGGTTC
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh-hhhhhhccc
Confidence 00000000 000 111223344
Q ss_pred cEEEccCCcccccCCccccc---------------------CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc
Q 046908 168 IYLDMPKNIFEGDIPYSIGE---------------------MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~---------------------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 226 (551)
+.+++.++.+.... .+.. +..|+.+++..|... ..+. ...+++|+.+++++|.+
T Consensus 309 ~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~--~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 309 SSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFS--EVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp SEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC-CBCC--CCBCTTCCEEECCSSCC
T ss_pred cccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCC-CCcc--cccccccccchhhcccc
Confidence 55555444443221 1222 344555555555443 2221 12478999999999988
Q ss_pred cc--cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCC-cc-cccccceeecccccc
Q 046908 227 FG--QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVS-SF-NLSSVKHLYLQKNAI 302 (551)
Q Consensus 227 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l 302 (551)
.. ..+..+..+.+|+.+++..+..... +..+..+++|+.++++.+......+. .+ .+++++.++++.|.+
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITM------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEE------CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhhhhhhhccccccccc------cccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 54 3455667889999999999987643 23378899999999999887765543 34 899999999999988
Q ss_pred ccCccceeccCccccccCCCceEEecCCcccc-cCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCC
Q 046908 303 TGDNKFFGRIPYQINELSNLHVLLLRGNSLQG-HIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (551)
.. ..+..+..++.|+.|++++|.+.. ..|.. |..+++|++|+|++|++++..|..|.++++|
T Consensus 458 ~~------~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----------~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 458 RV------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp EE------CCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cc------ccccccccchhhhhhhhhhcccccccCchh-----------hhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 63 456678889999999999998653 34443 5788999999999999999899999999999
Q ss_pred cEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCCC
Q 046908 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 382 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+|++|+|++..+..|.++++|+.|++++|++++..|..+..+ ++|++|++++|++.|.+..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999889999999999999999999999999999988 6899999999999998864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=330.22 Aligned_cols=388 Identities=18% Similarity=0.175 Sum_probs=271.5
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+...+++++++|.++ .+|..+. ++|++|++++|.+.+ ++...|.++++|++|++++|.+. .++++.|..+++|+
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCC
Confidence 4455699999999999 5776654 899999999999984 55577999999999999999754 56666899999999
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCCh-hHhhhcCCccEEEccCCcccccCCccccc
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPR-NMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
+|++++|.++.+|.. .+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+. .+..
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~-------------~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~ 165 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFD-------------VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP 165 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCS-------------BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCcc-------------ccCchHhhcccCcccEEecCCCccccC---chhh
Confidence 999999999999977 8999999999999997 4431 2334589999999999998763 4455
Q ss_pred CCCC--cEEECcCCcc--ceeCChhhhhCCC-CCCEEECcCCcccccCCc-ccCCCCCCCEEecccc-------------
Q 046908 188 MKEL--YMQDLSRNNF--SGELPQPIVSGCV-ALDLFDLSNNNFFGQIFP-KYMNLTHLHWLYLDNN------------- 248 (551)
Q Consensus 188 l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n------------- 248 (551)
+++| +.|++++|++ .+..|..+. .+. ..-.+++++|.+.+..+. .+..+++|+.+++++|
T Consensus 166 l~~L~L~~L~L~~n~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 166 VAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp GTTSCEEEEEEEESSCCCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhhceeeEEEeecccccccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 5566 9999999988 544443321 111 011234444443332211 2233344444444433
Q ss_pred ---------------cccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--------------------------
Q 046908 249 ---------------HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-------------------------- 287 (551)
Q Consensus 249 ---------------~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------- 287 (551)
.+.+.... .++. ....++|++|++++|.+++..+..+
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~-~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~ 322 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSV-KLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHH-HHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHH
T ss_pred HhccCcceEEEecCCcCcHHHHH-HHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChh
Confidence 22211000 0111 1122366666666666664333221
Q ss_pred ------cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEe
Q 046908 288 ------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361 (551)
Q Consensus 288 ------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~ 361 (551)
...+|++|++++|.+. ..+ ....+++|++|++++|.+++.+|..+ .++++|+.|+
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~-------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~ 383 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFI-------HMV-CPPSPSSFTFLNFTQNVFTDSVFQGC-----------STLKRLQTLI 383 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCC-------CCC-CCSSCCCCCEEECCSSCCCTTTTTTC-----------CSCSSCCEEE
T ss_pred hhhhhhccCcceEEEccCCCcc-------ccc-CccCCCCceEEECCCCccccchhhhh-----------cccCCCCEEE
Confidence 1134666666666553 111 11567899999999999987777654 6778899999
Q ss_pred cCCCcCccc--CCccccCCCCCcEEEcCCCCCCC-cccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCc
Q 046908 362 LSSNELSGE--IPREIGQLQNIRALNLSNNFLSG-AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 362 Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~ 438 (551)
+++|.+++. .|..+.++++|++|++++|++++ ..+..+..+++|+.|++++|++++..|..+. ++|++|++++|+
T Consensus 384 L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp CCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred CCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 999999853 34668899999999999999997 4445688899999999999999877776654 689999999999
Q ss_pred cccCCCCCccCCccCCcccCCCCCC
Q 046908 439 LSGPTPDKEQFATFDESSYTGNHEL 463 (551)
Q Consensus 439 l~~~~~~~~~~~~~~~~~~~~n~~~ 463 (551)
++...+....+..++.+++.+|...
T Consensus 462 l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 462 IMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CcccChhhcCCCCCCEEECCCCCCC
Confidence 9876666667788888889888755
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=314.69 Aligned_cols=346 Identities=25% Similarity=0.278 Sum_probs=189.1
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+++|+.|+++++++.. +|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence 3566666666666653 332 5566666666666666664333 6666666666666666553322 4455555555
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcC
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~ 165 (551)
++++|.+... +. +..+++|++|++++|.+..++. +..++
T Consensus 118 ~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~------------------------------------- 156 (466)
T 1o6v_A 118 TLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISA-LSGLT------------------------------------- 156 (466)
T ss_dssp ECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGG-GTTCT-------------------------------------
T ss_pred ECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChh-hccCC-------------------------------------
Confidence 5554442221 11 4444455555555554444432 44444
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
+|+.|+++ +.+.+. ..+.++++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 157 ~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 157 SLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228 (466)
T ss_dssp TCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred cccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence 44444443 222211 12445555555555555554 2321 3345555555555555554333 444555666666
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceE
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L 325 (551)
++|.+++. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.++ .++. +..+++|++|
T Consensus 229 ~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-------~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 229 NGNQLKDI-------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-------NISP-LAGLTALTNL 292 (466)
T ss_dssp CSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-------CCGG-GTTCTTCSEE
T ss_pred CCCCcccc-------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-------cccc-ccCCCccCeE
Confidence 66555432 124555666666666666655443 115566666666666555 2222 5556666666
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
++++|++.+..| +..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|
T Consensus 293 ~L~~n~l~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 293 ELNENQLEDISP-------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp ECCSSCCSCCGG-------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred EcCCCcccCchh-------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 666666653221 2455666666666666664443 55666777777777766654 346666777
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 777777777765555 56666677777777766653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=314.94 Aligned_cols=326 Identities=21% Similarity=0.259 Sum_probs=253.4
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCccccc
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGK 155 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 155 (551)
+..+++|++|++++|.+... ++ +..+++|++|++++|.+..++. +.++++|++|++++|.++ .
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-------------~ 126 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDI-TP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-------------D 126 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-------------C
T ss_pred hhhhcCCCEEECCCCccCCc-hh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-------------C
Confidence 33444444444444432222 11 5566677777777777766665 677777777777777766 3
Q ss_pred CChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccC
Q 046908 156 LPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 156 l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
++. +..+++|++|++++|.+.+. ..+..+++|+.|+++ +.+. .++. +..+++|+.|++++|.+.+. ..+.
T Consensus 127 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 127 IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCCC--hhhc
Confidence 333 33477888888888877753 248899999999997 4554 3333 67899999999999998764 4588
Q ss_pred CCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
.+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.. ....+++|++|++++|.++ .++.
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-------~~~~- 260 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS-------NLAP- 260 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-------CCGG-
T ss_pred cCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc-------cchh-
Confidence 99999999999999986432 678999999999999998753 2228999999999999987 3333
Q ss_pred ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcc
Q 046908 316 INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 395 (551)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred hhcCCCCCEEECCCCccCcccc-------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 7889999999999999984322 3678899999999999986544 889999999999999999776
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| ...+..+..+++.+|++..
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred h--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 6 78899999999999999865 468899999999999999998887 6677888888898888765
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=315.98 Aligned_cols=368 Identities=21% Similarity=0.202 Sum_probs=174.2
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCC-------------CEeeCCCCcccccc
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL-------------EYLDRFSINFQGTI 71 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~ 71 (551)
+..+|++|++++|++ +.+|++++++++|++|++++|.+.+..|..++++++| ++|++++|.+.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 357889999999998 6888889999999999999999888888888887764 8888888877642
Q ss_pred ChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCc
Q 046908 72 SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNN 151 (551)
Q Consensus 72 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 151 (551)
|. ..++|++|++++|.+.. ++. ..++|++|++++|++..++... ++|++|++++|.++
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~---------- 144 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLE---------- 144 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCS----------
T ss_pred CC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCC----------
Confidence 21 13577777777776544 332 1256666666666665554321 45666666666655
Q ss_pred ccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC
Q 046908 152 FAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF 231 (551)
Q Consensus 152 ~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 231 (551)
.+|. +..+++|++|++++|.+.+ +|.. ..+|+.|++++|++. .+|. +..+++|++|++++|.+.+. |
T Consensus 145 ---~lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~l~~N~l~~l-~ 211 (454)
T 1jl5_A 145 ---KLPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKL-P 211 (454)
T ss_dssp ---SCCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-C
T ss_pred ---CCcc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCCCCCCEEECCCCcCCcC-C
Confidence 2331 2235555555555555553 2322 235555555555555 3442 34455555555555555432 1
Q ss_pred cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceec
Q 046908 232 PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGR 311 (551)
Q Consensus 232 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 311 (551)
.. .++|++|++++|.+..++ .+..+++|++|++++|.+++.+. .+++|++|++++|.++ .
T Consensus 212 ~~---~~~L~~L~l~~n~l~~lp-------~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~-------~ 271 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILEELP-------ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT-------D 271 (454)
T ss_dssp CC---CTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS-------C
T ss_pred CC---cCcccEEECcCCcCCccc-------ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCccc-------c
Confidence 11 135555555555554221 14455555555555555554322 1345555555555554 2
Q ss_pred cCccccccCCCceEEecCCcccc--cCChhhhhhhchhhH---hhhcc-ccCceEecCCCcCcccCCccccCCCCCcEEE
Q 046908 312 IPYQINELSNLHVLLLRGNSLQG--HIPNELCHVSRFLHR---FYSNL-KYMAGLDLSSNELSGEIPREIGQLQNIRALN 385 (551)
Q Consensus 312 ~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~---~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (551)
+|.. .++|++|++++|++++ .+|..+..+. +... .+..+ ++|+.|++++|++++ +|.. +++|++|+
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~-l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLN-ASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEE-CCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEE-CcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 3322 2445555555555543 1111000000 0000 00111 356666666666663 4432 35666666
Q ss_pred cCCCCCCCcccccccCCCCCCEEeCCCCcCcc--cCCCCCCCC-------------CCCCeEECCCCcccc
Q 046908 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSG--HIPPQLTGL-------------NFLSNFNVSYNNLSG 441 (551)
Q Consensus 386 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l-------------~~L~~l~l~~N~l~~ 441 (551)
+++|++++ +|. .+++|+.|++++|++++ .+|..+..+ ++|++|++++|++++
T Consensus 344 L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 344 ASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 66666663 333 35666666666666665 455555555 556666666666665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=317.53 Aligned_cols=346 Identities=18% Similarity=0.155 Sum_probs=289.7
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMG 161 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~ 161 (551)
+.++.+++. ...+|... .++++.|++++|+++.++ ..+.++++|++|+|++|.++ .++...+
T Consensus 14 ~~v~c~~~~-l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------~~~~~~~ 76 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-------------AVEPGAF 76 (477)
T ss_dssp TEEECCSCC-CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-------------EECTTTT
T ss_pred CEEEeCCCC-cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-------------EeChhhh
Confidence 455655544 33444422 258999999999997774 58899999999999999988 4444444
Q ss_pred hhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 162 IVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 162 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
..+++|++|++++|.+....+..|.++++|+.|++++|++. .++...+..+++|++|++++|.+.+..+..|.++++|+
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 45899999999999999877778999999999999999998 55555667899999999999999999899999999999
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccC
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELS 320 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~ 320 (551)
+|++++|.++... +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.. .+|.......
T Consensus 156 ~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~ 224 (477)
T 2id5_A 156 QLTLEKCNLTSIP-----TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD------TMTPNCLYGL 224 (477)
T ss_dssp EEEEESCCCSSCC-----HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC------EECTTTTTTC
T ss_pred EEECCCCcCcccC-----hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc------ccCcccccCc
Confidence 9999999998643 3458899999999999999999888777 89999999999987542 5666666667
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
+|++|++++|.++ .+|.. .|..+++|+.|+|++|.+++..+..|.++++|++|++++|++++..+..|.
T Consensus 225 ~L~~L~l~~n~l~-~~~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 225 NLTSLSITHCNLT-AVPYL----------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CCSEEEEESSCCC-SCCHH----------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccEEECcCCccc-ccCHH----------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 9999999999998 45532 257889999999999999988888899999999999999999988899999
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++++|+.|++++|++++..+..|..+++|++|++++|++.|.++..+.+.......+.++...|..|.
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 99999999999999998777788999999999999999998876544444444566778888887654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=315.86 Aligned_cols=345 Identities=17% Similarity=0.198 Sum_probs=262.6
Q ss_pred CEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEcc
Q 046908 58 EYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLS 136 (551)
Q Consensus 58 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls 136 (551)
+.++.+++.+. .+|.. -.++++.|++++|.+. .+++..|..+++|++|++++|.+..+ |..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSC---CCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCC---CCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 46666666665 34432 2357888999888744 45555788888999999999988666 5678888899999999
Q ss_pred CCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCC
Q 046908 137 NNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL 216 (551)
Q Consensus 137 ~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 216 (551)
+|.++ .+|...+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|
T Consensus 89 ~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 154 (477)
T 2id5_A 89 SNRLK-------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL 154 (477)
T ss_dssp SSCCC-------------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTC
T ss_pred CCcCC-------------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCC
Confidence 98887 666666666888999999999988888888888899999999999887 5555566778899
Q ss_pred CEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCc-cccccccee
Q 046908 217 DLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS-FNLSSVKHL 295 (551)
Q Consensus 217 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L 295 (551)
+.|++++|.+++..+..|..+++|+.|++++|.+.+..+.. |..+++|+.|++++|...+..+.. +...+|++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccccCcccccCccccEE
Confidence 99999999888777777888899999999998888755444 788889999999888765544443 356689999
Q ss_pred eccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcc
Q 046908 296 YLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 374 (551)
++++|.++ .+| ..+..+++|+.|++++|++++..+.. |.++++|+.|+|++|.+++..|..
T Consensus 230 ~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 230 SITHCNLT-------AVPYLAVRHLVYLRFLNLSYNPISTIEGSM-----------LHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp EEESSCCC-------SCCHHHHTTCTTCCEEECCSSCCCEECTTS-----------CTTCTTCCEEECCSSCCSEECTTT
T ss_pred ECcCCccc-------ccCHHHhcCccccCeeECCCCcCCccChhh-----------ccccccCCEEECCCCccceECHHH
Confidence 99998887 555 35778888999999999888544433 467788899999999988888888
Q ss_pred ccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 375 IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 375 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
|.++++|++|++++|++++..+..|..+++|+.|++++|.+...-+.. .-......+++.++...|..|.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 888899999999999998777778888889999999999887432211 1112233455566666655554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=310.67 Aligned_cols=355 Identities=18% Similarity=0.156 Sum_probs=256.1
Q ss_pred CCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCC
Q 046908 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKL 82 (551)
Q Consensus 3 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (551)
++++++|++|++++|++++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+.+. + +..+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCcC
Confidence 44577888888888888854 4 578888888888888888854 3 77888888888888887753 2 6777888
Q ss_pred CEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh
Q 046908 83 EVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI 162 (551)
Q Consensus 83 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~ 162 (551)
++|++++|.+.. ++ +..+++|++|++++|+++.++ +..+++|++|++++|...+ .++ +.
T Consensus 109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~------------~~~---~~ 167 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT------------KLD---VT 167 (457)
T ss_dssp CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC------------CCC---CT
T ss_pred CEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc------------ccc---cc
Confidence 888888776544 22 677778888888888886664 6677778888888775432 221 12
Q ss_pred hcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCE
Q 046908 163 VLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242 (551)
Q Consensus 163 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 242 (551)
.+++|+.|++++|.+++. | +..+++|+.|++++|+++ .++ +..+++|+.|++++|++++. | +..+++|+.
T Consensus 168 ~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~ 237 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTY 237 (457)
T ss_dssp TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSE
T ss_pred cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCccccc-C--ccccCCCCE
Confidence 366777888887777763 3 667777777777777776 333 45577777777777777763 3 667777777
Q ss_pred EecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCC
Q 046908 243 LYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 243 L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
|++++|.+++.+ ...+++|+.|+++.| +|+.|++++|.+. +.+| +..+++|
T Consensus 238 L~l~~N~l~~~~--------~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~------~~~~--~~~l~~L 288 (457)
T 3bz5_A 238 FDCSVNPLTELD--------VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQL------IYFQ--AEGCRKI 288 (457)
T ss_dssp EECCSSCCSCCC--------CTTCTTCCEEECTTC-------------CCSCCCCTTCTTC------CEEE--CTTCTTC
T ss_pred EEeeCCcCCCcC--------HHHCCCCCEEeccCC-------------CCCEEECCCCccC------Cccc--ccccccC
Confidence 777777776542 345667777776654 4566677777643 2444 4578899
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.|++++|+..+.+|.....+..+ .+.++++|+.|++++|++++. + +.++++|+.|++++|++++ +
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred CEEECCCCcccceeccCCCcceEe---chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence 999999998887777654444333 367778899999999999864 3 7888999999999999885 2
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4566777888888765 2445688889999999998876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=301.39 Aligned_cols=361 Identities=24% Similarity=0.296 Sum_probs=206.6
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCC-------------CEEEcccCcCccccchhccCCCCCCEeeCCCCccc
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHL-------------KVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQ 68 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 68 (551)
+++++++|++|++++|++.+..|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+.
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT 104 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCC
Confidence 46778888888888888888888888887764 888888888874 3432 367888888888877
Q ss_pred cccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCC
Q 046908 69 GTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICS 148 (551)
Q Consensus 69 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 148 (551)
+ ++. .+++|++|++++|.+.. ++. ..++|++|++++|+++.+| .+..+++|++|++++|.+++
T Consensus 105 ~-lp~----~~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------ 167 (454)
T 1jl5_A 105 E-LPE----LPQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------ 167 (454)
T ss_dssp S-CCC----CCTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------
T ss_pred c-ccc----ccCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------
Confidence 5 442 24778888888776443 221 1157888888888887777 47778888888888887762
Q ss_pred CCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 149 NNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 149 ~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
+|.. .++|++|++++|.+.+ +| .+.++++|+.|++++|++. .+|.. .++|++|++++|.+.
T Consensus 168 -------lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 168 -------LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE- 228 (454)
T ss_dssp -------CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-
T ss_pred -------cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-
Confidence 2221 2366666666666665 33 4666666666666666665 34431 246666666666665
Q ss_pred cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccc
Q 046908 229 QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 229 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 308 (551)
.+| .+..+++|++|++++|.+++.+. .+++|++|++++|.+++.+.. +++|++|++++|.+++..
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~-- 293 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS-- 293 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES--
T ss_pred ccc-ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc--
Confidence 233 36666666666666666654321 124555555555555543221 244555555555444100
Q ss_pred eeccCc-------------ccccc-CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCcc
Q 046908 309 FGRIPY-------------QINEL-SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374 (551)
Q Consensus 309 ~~~~~~-------------~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 374 (551)
.+|. .+..+ ++|++|++++|++++ +|. .+++|+.|++++|.++ .+|.
T Consensus 294 --~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~--------------~~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 294 --ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA--------------LPPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp --CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC--------------CCTTCCEEECCSSCCS-CCCC-
T ss_pred --CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc--------------cCCcCCEEECCCCccc-cccc-
Confidence 0010 01112 467777777777763 443 2478999999999998 5665
Q ss_pred ccCCCCCcEEEcCCCCCCC--cccccccCC-------------CCCCEEeCCCCcCcc--cCCCCCCCCCCCCeEECCCC
Q 046908 375 IGQLQNIRALNLSNNFLSG--AIPESFSNL-------------KMTESLDLSHNRLSG--HIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 375 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~N 437 (551)
.+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. +++.+.+.+|
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~ 426 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSE 426 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCc
Confidence 47899999999999998 677888777 899999999999986 4553 4677788888
Q ss_pred ccccCCC
Q 046908 438 NLSGPTP 444 (551)
Q Consensus 438 ~l~~~~~ 444 (551)
.+.+..+
T Consensus 427 ~~~~~~~ 433 (454)
T 1jl5_A 427 RVVDPYE 433 (454)
T ss_dssp -------
T ss_pred ccCCccc
Confidence 8876654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=295.86 Aligned_cols=334 Identities=19% Similarity=0.188 Sum_probs=182.5
Q ss_pred CCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCE
Q 046908 54 LTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIF 132 (551)
Q Consensus 54 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~ 132 (551)
++++++|+++++.+. .++...+..+++|++|++++|.+ ..+++..|..+++|++|++++|.+..++ ..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 456666666665554 34444555566666666665543 2333344555566666666666654443 23455555555
Q ss_pred EEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhC
Q 046908 133 LDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG 212 (551)
Q Consensus 133 L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 212 (551)
|++++|.++ .+|..++..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .++
T Consensus 122 L~L~~n~l~-------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~------ 181 (390)
T 3o6n_A 122 LVLERNDLS-------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD------ 181 (390)
T ss_dssp EECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC------
T ss_pred EECCCCccC-------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc------
Confidence 555555554 444444333445555555555554444444444444444444444443 222
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+..+++|+.|++++|.++. +...++|+.|++++|.+....... .++|
T Consensus 182 ---------------------~~~l~~L~~L~l~~n~l~~----------~~~~~~L~~L~l~~n~l~~~~~~~--~~~L 228 (390)
T 3o6n_A 182 ---------------------LSLIPSLFHANVSYNLLST----------LAIPIAVEELDASHNSINVVRGPV--NVEL 228 (390)
T ss_dssp ---------------------GGGCTTCSEEECCSSCCSE----------EECCSSCSEEECCSSCCCEEECCC--CSSC
T ss_pred ---------------------cccccccceeecccccccc----------cCCCCcceEEECCCCeeeeccccc--cccc
Confidence 2223333444444443332 122234445555555444432221 3456
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
++|++++|.+++ ...+..+++|++|++++|.+.+..|.. |..+++|+.|++++|.+++ ++
T Consensus 229 ~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~-~~ 288 (390)
T 3o6n_A 229 TILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHP-----------FVKMQRLERLYISNNRLVA-LN 288 (390)
T ss_dssp CEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGG-----------GTTCSSCCEEECCSSCCCE-EE
T ss_pred cEEECCCCCCcc--------cHHHcCCCCccEEECCCCcCCCcChhH-----------ccccccCCEEECCCCcCcc-cC
Confidence 666666665541 134556666777777777666554544 3556667777777777763 44
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + +..++.|+.|++++|++.+.... ..+..+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 363 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 363 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHH
Confidence 45566777777777777777 4455566777777777777777643 2 55667777788888877664322 233444
Q ss_pred CCcccCCCCCCCCcc
Q 046908 453 DESSYTGNHELCGSL 467 (551)
Q Consensus 453 ~~~~~~~n~~~c~~~ 467 (551)
....+.+++..|.++
T Consensus 364 ~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 364 ARPAVDDADQHCKID 378 (390)
T ss_dssp CTTTBCCCCSCCCTT
T ss_pred HhhcccccCceeccc
Confidence 455556666666543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=298.90 Aligned_cols=332 Identities=20% Similarity=0.184 Sum_probs=255.3
Q ss_pred CCCCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCC
Q 046908 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSK 81 (551)
Q Consensus 2 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (551)
+++++++|++|++++|++++. | +..+++|++|++++|.+++. + ++++++|++|++++|.+.+ ++ +..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCc
Confidence 467889999999999999975 4 89999999999999999965 3 8999999999999999986 33 889999
Q ss_pred CCEEEcccCcccccccCCCccCCCCccEEEccCCC-CCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhH
Q 046908 82 LEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCH-LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNM 160 (551)
Q Consensus 82 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~ 160 (551)
|++|++++|.+.. + .+..+++|++|++++|. ++.+ .+..+++|++|++++|.++ .+|
T Consensus 129 L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-------------~l~--- 186 (457)
T 3bz5_A 129 LTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-------------ELD--- 186 (457)
T ss_dssp CCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-------------CCC---
T ss_pred CCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-------------eec---
Confidence 9999999998665 3 37889999999999995 4666 4778999999999999998 444
Q ss_pred hhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 161 GIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
...+++|+.|++++|.+++. .+..+++|+.|++++|+++ .+| +..+++|+.|++++|++++..+ ..+++|
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~~---~~l~~L 256 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELDV---STLSKL 256 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCCC---TTCTTC
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcCH---HHCCCC
Confidence 23478999999999999975 4888999999999999999 477 5679999999999999988653 456667
Q ss_pred CEEecccccccCcCCC-----chhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcc
Q 046908 241 HWLYLDNNHFSGKMDD-----ANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQ 315 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 315 (551)
+.|+++.|.+....-. +.+| +..+++|+.|++++|...+..+. ..++|+.|+
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~------------------- 313 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELD------------------- 313 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCC-------------------
T ss_pred CEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEec-------------------
Confidence 7776665533221100 0111 23445555555555544333221 123333333
Q ss_pred ccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcc
Q 046908 316 INELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAI 395 (551)
Q Consensus 316 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 395 (551)
+..+++|++|++++|++++ ++ +..+++|+.|++++|++++ ++.|..|++++|.+.+.
T Consensus 314 l~~~~~L~~L~L~~N~l~~-l~-------------l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE-LD-------------VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC-CC-------------CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred hhhcccCCEEECCCCcccc-cc-------------cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-
Confidence 3445789999999999986 32 3678899999999999985 35677788999998865
Q ss_pred cccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 396 PESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 396 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
..+..|+.+++++|+++|.+|..+..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ----ceeeecCccccccCcEEEEcChhHhc
Confidence 24567888999999999999876543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=293.56 Aligned_cols=314 Identities=23% Similarity=0.221 Sum_probs=273.5
Q ss_pred CCCCccEEEccCCCCCCCchh-hhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSF-LLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~ 181 (551)
.+.+++.|++++|.++.+|.. +..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------EIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-------------ccChhhccCCCCcCEEECCCCCCCcCC
Confidence 356899999999999888865 678999999999999987 555555556899999999999999888
Q ss_pred CcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhH
Q 046908 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILV 261 (551)
Q Consensus 182 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 261 (551)
|..|.++++|+.|++++|++. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------- 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-------
T ss_pred HHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-------
Confidence 889999999999999999998 899888888999999999999999988889999999999999999998642
Q ss_pred hhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhh
Q 046908 262 QLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 341 (551)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 341 (551)
+..+++|+.|++++|.+++.. ..++|++|++++|.++ .+|... .++|+.|++++|.+++. ..
T Consensus 182 -~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~-------~~~~~~--~~~L~~L~l~~n~l~~~--~~-- 243 (390)
T 3o6n_A 182 -LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-------VVRGPV--NVELTILKLQHNNLTDT--AW-- 243 (390)
T ss_dssp -GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC-------EEECCC--CSSCCEEECCSSCCCCC--GG--
T ss_pred -cccccccceeecccccccccC----CCCcceEEECCCCeee-------eccccc--cccccEEECCCCCCccc--HH--
Confidence 677899999999999987653 3568999999999987 344332 47999999999999843 22
Q ss_pred hhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCC
Q 046908 342 HVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPP 421 (551)
Q Consensus 342 ~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 421 (551)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|.
T Consensus 244 ---------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 244 ---------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp ---------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred ---------HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc
Confidence 5788999999999999998889999999999999999999985 5666788999999999999998 5677
Q ss_pred CCCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 422 QLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 422 ~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
.+..+++|++|++++|+++... ...+..++.+++.+|++.|+|..
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHH
Confidence 7888899999999999998664 45678899999999999998754
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=302.99 Aligned_cols=333 Identities=19% Similarity=0.182 Sum_probs=209.9
Q ss_pred CCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCE
Q 046908 54 LTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIF 132 (551)
Q Consensus 54 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~ 132 (551)
+.+++.+++++|.+. .+|...+..+++|++|++++|.+. .+++..|..+++|++|++++|.+..++. .+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 456666766666555 445455666666666666665533 3333455666666666666666644443 3455555566
Q ss_pred EEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhC
Q 046908 133 LDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSG 212 (551)
Q Consensus 133 L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 212 (551)
|++++|.++ .+|..++..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.
T Consensus 128 L~L~~n~l~-------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------- 184 (597)
T 3oja_B 128 LVLERNDLS-------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---------- 184 (597)
T ss_dssp EECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS----------
T ss_pred EEeeCCCCC-------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC----------
Confidence 665555555 444444333455555555555555444444444455555555444444
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+.. +..+++|+.|++++|.+.+ +...++|+.|++++|.+....... .++|
T Consensus 185 ---------------~~~---~~~l~~L~~L~l~~n~l~~----------l~~~~~L~~L~ls~n~l~~~~~~~--~~~L 234 (597)
T 3oja_B 185 ---------------HVD---LSLIPSLFHANVSYNLLST----------LAIPIAVEELDASHNSINVVRGPV--NVEL 234 (597)
T ss_dssp ---------------BCC---GGGCTTCSEEECCSSCCSE----------EECCTTCSEEECCSSCCCEEECSC--CSCC
T ss_pred ---------------CcC---hhhhhhhhhhhcccCcccc----------ccCCchhheeeccCCccccccccc--CCCC
Confidence 321 2234455555555555443 233345666666666665544332 3567
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+++ +|
T Consensus 235 ~~L~L~~n~l~~--------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 235 TILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPF-----------VKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp CEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGGG-----------TTCSSCCEEECTTSCCCE-EE
T ss_pred CEEECCCCCCCC--------ChhhccCCCCCEEECCCCccCCCCHHHh-----------cCccCCCEEECCCCCCCC-CC
Confidence 777777777652 3556778888888888888887666653 667788888888888874 56
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. | +..++.|+.|++++|++.|.+.. ..+..+
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 369 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 369 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHH
Confidence 66677889999999999998 5666778889999999999998854 2 66778899999999999876532 234455
Q ss_pred CCcccCCCCCCCCc
Q 046908 453 DESSYTGNHELCGS 466 (551)
Q Consensus 453 ~~~~~~~n~~~c~~ 466 (551)
....+.+++..|+.
T Consensus 370 ~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 370 ARPAVDDADQHCKI 383 (597)
T ss_dssp CTTTBCCCCCCCCT
T ss_pred hhhccccccccCCc
Confidence 55666777878865
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.73 Aligned_cols=305 Identities=21% Similarity=0.268 Sum_probs=200.8
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLP 157 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~ 157 (551)
.+++|++|+++++.... ++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++ .++
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-------------~~~ 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-------------DIS 104 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CCG
T ss_pred hcccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-------------Cch
Confidence 34444555554443221 11 24555566666666666655555 566666666666666655 232
Q ss_pred hhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCC
Q 046908 158 RNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNL 237 (551)
Q Consensus 158 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 237 (551)
. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+
T Consensus 105 ~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 105 A--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp G--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred H--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccC
Confidence 1 2235666666666666654322 56667777777777754433333 4557777777777777655433 6677
Q ss_pred CCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCcccc
Q 046908 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
++|++|++++|.+.+... +..+++|+.+++++|.+.+..+ ...+++|++|++++|.++ .++. +.
T Consensus 177 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~-------~~~~-~~ 240 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT-------DLSP-LA 240 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-------CCGG-GT
T ss_pred CCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC-------CCcc-hh
Confidence 777777777777664321 6677777777777777776554 226777888888888776 3333 66
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
.+++|++|++++|.+++ ++ . +..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~-~-----------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-IN-A-----------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp TCTTCCEEECCSSCCCC-CG-G-----------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCCCCEEECCCCccCC-Ch-h-----------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 77888888888887763 21 1 46677888888888888753 4577888888888888888877778
Q ss_pred cccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
.+.++++|+.|++++|++++..| +..+++|+++++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888888888886655 777888888888888875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=302.12 Aligned_cols=313 Identities=23% Similarity=0.227 Sum_probs=272.9
Q ss_pred CCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 104 TSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
+.+++.+++++|.+..+|. .+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------EIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-------------CCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 5688999999999988886 4677999999999999988 4555444568999999999999999888
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQ 262 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 262 (551)
..|+++++|+.|++++|.+. .+|...|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------- 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------- 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--------
T ss_pred HHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--------
Confidence 89999999999999999998 889888889999999999999999999999999999999999999998642
Q ss_pred hccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhh
Q 046908 263 LSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCH 342 (551)
Q Consensus 263 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 342 (551)
+..+++|+.|++++|.+++.. ..++|++|++++|.++ .++..+ .++|+.|++++|.+++. ..
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~-------~~~~~~--~~~L~~L~L~~n~l~~~--~~--- 249 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-------VVRGPV--NVELTILKLQHNNLTDT--AW--- 249 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCC-------EEECSC--CSCCCEEECCSSCCCCC--GG---
T ss_pred hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccc-------cccccc--CCCCCEEECCCCCCCCC--hh---
Confidence 667899999999999988753 3568999999999987 344333 36899999999999852 22
Q ss_pred hhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCC
Q 046908 343 VSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQ 422 (551)
Q Consensus 343 ~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 422 (551)
+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..
T Consensus 250 --------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 250 --------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp --------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred --------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 4788999999999999999999999999999999999999995 5667788999999999999999 67777
Q ss_pred CCCCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 423 LTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 423 ~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+..+++|++|++++|++++.. ...+..+..+++.+|++.|+|..
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence 888999999999999998764 45677889999999999998753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=273.23 Aligned_cols=305 Identities=23% Similarity=0.334 Sum_probs=177.4
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
.+++|++|++++|++.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+... ..+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTCSE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---hHHcCCCcCCE
Confidence 45566666666666653 22 25666666666666666663322 66666666666666655532 13445555555
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
|+++ +|.+..++. +..+++|++|++++|.... .++. +..+
T Consensus 115 L~l~-------------------------~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------~~~~--~~~l 154 (347)
T 4fmz_A 115 LYLN-------------------------EDNISDISP-LANLTKMYSLNLGANHNLS------------DLSP--LSNM 154 (347)
T ss_dssp EECT-------------------------TSCCCCCGG-GTTCTTCCEEECTTCTTCC------------CCGG--GTTC
T ss_pred EECc-------------------------CCcccCchh-hccCCceeEEECCCCCCcc------------cccc--hhhC
Confidence 5554 444444433 4444455555555443221 1111 1124
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++|++|++++|.+.+..+ +..+++|+.|++++|++. .++. +..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 227 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence 455555555555443322 455566666666666655 3333 3446666666666666654333 55666666666
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCce
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
+++|.++...+ +..+++|++|++++|.+++.. ....+++|++|++++|.++ .+ +.+..+++|++
T Consensus 228 l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~ 291 (347)
T 4fmz_A 228 IGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS-------DI-SVLNNLSQLNS 291 (347)
T ss_dssp CCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-------CC-GGGGGCTTCSE
T ss_pred ccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccC-------CC-hhhcCCCCCCE
Confidence 66666654211 566667777777777666541 1126677777777777765 23 34667788888
Q ss_pred EEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC
Q 046908 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 325 L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
|++++|++++..|.. +..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus 292 L~L~~n~l~~~~~~~-----------l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEV-----------IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHH-----------HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhH-----------hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888887554443 4667788888888888885555 778888999999888875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=272.37 Aligned_cols=257 Identities=35% Similarity=0.543 Sum_probs=193.8
Q ss_pred CCcEEECcCCccce--eCChhhhhCCCCCCEEECcC-CcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 190 ELYMQDLSRNNFSG--ELPQPIVSGCVALDLFDLSN-NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 190 ~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
+++.|++++|++.+ .+|..+ ..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++ .+|..+..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-----AIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-----ECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-----cCCHHHhCC
Confidence 45555555555554 455433 3355666666653 55555556666666666666666666654 233336666
Q ss_pred CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccC-CCceEEecCCcccccCChhhhhhh
Q 046908 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-NLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
++|++|++++|.+++..+..+ .+++|++|++++|.++ +.+|..+..++ +|++|++++|++++.+|..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---- 194 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---- 194 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------EECCGGGGCCCTTCCEEECCSSEEEEECCGGG----
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc------CcCCHHHhhhhhcCcEEECcCCeeeccCChHH----
Confidence 777777777777666555555 6777777777777665 26677777777 88888888888888888765
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
..+. |+.|++++|.+++..|..+..+++|++|++++|++++..+. +..+++|++|++++|++++.+|..+.
T Consensus 195 -------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 195 -------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp -------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred -------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 3444 88999999999888888999999999999999999866665 78899999999999999989999999
Q ss_pred CCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccccCCC
Q 046908 425 GLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKC 472 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~c 472 (551)
.+++|++|++++|++++.+|....+..+..+++.+|++.|+.+.. .|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999998888889999999999999987654 35
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=266.71 Aligned_cols=291 Identities=21% Similarity=0.209 Sum_probs=233.9
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+++.++++++.+..+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+.+..|..|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-------------EIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-------------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCC-------------EeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 78899999999988886543 67899999999888 5555455568899999999999998888899
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++++|++|++++|+++ .+|..++ ++|++|++++|.+.+..+..|..+++|++|++++|.+.... ..+..+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGG
T ss_pred cCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---cChhhccC
Confidence 99999999999999998 7887663 78999999999998888888899999999999999886421 22334888
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|++|++++|.++..+... .++|++|++++|.++. ..|..+..+++|++|++++|.+++..+..
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------ 235 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNGS------ 235 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECCSSCCCEECTTT------
T ss_pred CCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCceeChhh------
Confidence 999999999999988765544 3789999999998762 44667888899999999999988655544
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC------CCCCCEEeCCCCcCcc--
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN------LKMTESLDLSHNRLSG-- 417 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~-- 417 (551)
+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+..
T Consensus 236 -----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 236 -----LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp -----GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred -----ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 366788899999999888 77888888899999999999998777766653 3778889999998864
Q ss_pred cCCCCCCCCCCCCeEECCCCc
Q 046908 418 HIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N~ 438 (551)
..|..|..++.++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 556778888888999988874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=267.97 Aligned_cols=290 Identities=19% Similarity=0.201 Sum_probs=226.3
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+++.++++++.+..+|..+. +++++|++++|.+. .++...+..+++|++|++++|.+.+..|..|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS-------------ELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-------------EECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCC-------------ccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 68889999999988887553 68899999999887 4554444558899999999999988888889
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++++|+.|++++|++. .+|..++ ++|++|++++|.+....+..|..+++|++|++++|.++... ..+..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~ 171 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---FEPGAFDG 171 (332)
T ss_dssp TTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---SCTTSSCS
T ss_pred hCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---CCcccccC
Confidence 99999999999999987 7887664 78999999999998877778889999999999999886311 11223666
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+ +|++|++++|.+++.+... .++|++|++++|.++. ..+..+..+++|++|++++|++.+..+..
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~------ 236 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA------IELEDLLRYSKLYRLGLGHNQIRMIENGS------ 236 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCC------CCTTSSTTCTTCSCCBCCSSCCCCCCTTG------
T ss_pred C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCCcCChhH------
Confidence 6 8889999999888765543 3788888998888772 33466788888889999888888555444
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC------CCCCCEEeCCCCcCc--c
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN------LKMTESLDLSHNRLS--G 417 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~ 417 (551)
|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+. .
T Consensus 237 -----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 237 -----LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -----GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -----hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 366778888888888888 77777888888888888888888776666654 367888888888887 5
Q ss_pred cCCCCCCCCCCCCeEECCCCc
Q 046908 418 HIPPQLTGLNFLSNFNVSYNN 438 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N~ 438 (551)
..|..|..++.|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 667778888888888888874
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=304.99 Aligned_cols=265 Identities=17% Similarity=0.074 Sum_probs=142.4
Q ss_pred CCCCCEEECcCCCCcccCCcc-CCCCCCCCEEEcccCcCccc----cchhccCCCCCCEeeCCCCccccccChhhhcCCC
Q 046908 6 LKNLFELDLSSNNFEGHIPQC-LNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLDRFSINFQGTISINSLANHS 80 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 80 (551)
.++|++|||++|+++...... +..+++|++|+|++|.+++. ++..+..+++|++|++++|.+.+......+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357889999999987544333 77889999999999998843 4667788899999999998876543333333444
Q ss_pred ----CCCEEEcccCccccc---ccCCCccCCCCccEEEccCCCCCCC-ch----hhh-CCCCCCEEEccCCcccccCCCC
Q 046908 81 ----KLEVLLISSGSNMLQ---VKTETWHPTSQLKVLKLSDCHLHVI-PS----FLL-QHYHLIFLDLSNNKVVGNFPIC 147 (551)
Q Consensus 81 ----~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~l-~~----~~~-~~~~L~~L~Ls~n~l~~~~~~~ 147 (551)
+|++|++++|.+... ..+..+..+++|++|++++|.++.. +. .+. ..++|++|++++|.+++....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE- 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence 577777766654421 1122455566666666666665321 11 111 134566666666655421000
Q ss_pred CCCcccccCChhHhhhcCCccEEEccCCcccccCCcccc-----cCCCCcEEECcCCcccee----CChhhhhCCCCCCE
Q 046908 148 SNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG-----EMKELYMQDLSRNNFSGE----LPQPIVSGCVALDL 218 (551)
Q Consensus 148 ~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~ 218 (551)
.++.. +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|++++. ++. .+..+++|++
T Consensus 161 -------~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~ 231 (461)
T 1z7x_W 161 -------PLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRE 231 (461)
T ss_dssp -------HHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCE
T ss_pred -------HHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccE
Confidence 11111 12245566666666655443332222 134555666665555421 122 2223555555
Q ss_pred EECcCCcccccC-----CcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 219 FDLSNNNFFGQI-----FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 219 L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
|++++|.+.+.. +..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+.+
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCCCHH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-HHHHHHhhCCCcceEECCCCCCch
Confidence 555555554321 11222355555555555555421000 134444555555555555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=293.75 Aligned_cols=391 Identities=17% Similarity=0.106 Sum_probs=285.0
Q ss_pred CCCCCEEEcccCcCccccchh-ccCCCCCCEeeCCCCcccccc---ChhhhcCCCCCCEEEcccCcccccccCCCccCCC
Q 046908 30 LTHLKVLDISNNQLSGKVPST-LTNLTSLEYLDRFSINFQGTI---SINSLANHSKLEVLLISSGSNMLQVKTETWHPTS 105 (551)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 105 (551)
.++|++|+|++|.++...... +..+++|++|++++|.+.... -...+..+++|++|++++|.+........+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999998655444 788999999999999987431 1245788899999999999865543332233344
Q ss_pred ----CccEEEccCCCCC-----CCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCc
Q 046908 106 ----QLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176 (551)
Q Consensus 106 ----~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~ 176 (551)
+|++|++++|.++ .++..+..+++|++|++++|.+.+..+. .+...+....++|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ--------LLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH--------HHHHHHhcCCCcceEEECCCCC
Confidence 7999999999996 4577889999999999999988631110 1122222234579999999999
Q ss_pred ccccC----CcccccCCCCcEEECcCCccceeCChhhh----hCCCCCCEEECcCCccccc----CCcccCCCCCCCEEe
Q 046908 177 FEGDI----PYSIGEMKELYMQDLSRNNFSGELPQPIV----SGCVALDLFDLSNNNFFGQ----IFPKYMNLTHLHWLY 244 (551)
Q Consensus 177 ~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 244 (551)
+.+.. +..+..+++|+.|++++|.+.+..+..+. ...++|++|++++|.++.. .+..+..+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 98643 55677789999999999998744333332 2466999999999998864 356677889999999
Q ss_pred cccccccCcCCCchh-hHhhccCCCCCEEECCCCcccccC----CCcc-cccccceeeccccccccCccceeccCcccc-
Q 046908 245 LDNNHFSGKMDDANI-LVQLSQLKSLELIDIFENSLSGSL----VSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN- 317 (551)
Q Consensus 245 L~~n~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~- 317 (551)
+++|.+...... .+ +..+..+++|++|++++|.+++.. +..+ .+++|++|++++|.+++.. ...+...+.
T Consensus 234 Ls~n~l~~~~~~-~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~ 310 (461)
T 1z7x_W 234 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLE 310 (461)
T ss_dssp CCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTS
T ss_pred ccCCcCChHHHH-HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhcc
Confidence 999988752111 11 222346899999999999998742 3333 6899999999999886310 001111111
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccC-----CCCCcEEEcCCCCCC
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQ-----LQNIRALNLSNNFLS 392 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~ 392 (551)
..++|++|++++|.+++.....+ ...+..+++|++|++++|.+++..+..+.. .++|++|++++|+++
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHF-------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHH-------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCccceeeEcCCCCCchHHHHHH-------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 23699999999999885432222 123577899999999999998665554432 679999999999998
Q ss_pred C----cccccccCCCCCCEEeCCCCcCccc--------CCCCCCCCCCCCeEECCCCcccc
Q 046908 393 G----AIPESFSNLKMTESLDLSHNRLSGH--------IPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 393 ~----~~~~~~~~l~~L~~L~l~~n~l~~~--------~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
+ .++..+..+++|++|++++|++++. +|. ....|+.|++.++.+..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS---TTCCCCEEECTTCCCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc---CCcchhheeecccccCH
Confidence 6 6778888899999999999999753 222 23467888887776653
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=256.44 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=132.2
Q ss_pred CCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEE
Q 046908 32 HLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLK 111 (551)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 111 (551)
+++.++++++.++ .+|..+. ++|++|++++|.+.+ ++...|..+++|++|++++|.+. .+.+..|..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEE
Confidence 4555555555555 3343332 355555555555542 22233444444444444444322 22233455666666666
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccc--cCCcccccCC
Q 046908 112 LSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG--DIPYSIGEMK 189 (551)
Q Consensus 112 l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~ 189 (551)
+++|.++.+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.. ..+..+.+++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEIT-------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCC-------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCcCCccChhhc--ccccEEECCCCccc-------------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 66666666655433 56666666666665 4555555556666666666666642 4555666666
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+|+.|++++|++. .+|... .++|++|++++|++.+..+..|..+++|++
T Consensus 172 ~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------------------- 220 (330)
T 1xku_A 172 KLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAK--------------------------- 220 (330)
T ss_dssp TCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCE---------------------------
T ss_pred CcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCE---------------------------
Confidence 6777777666665 455433 245555555555555444444444444444
Q ss_pred CEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc
Q 046908 270 ELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG 334 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 334 (551)
|++++|.+++..+..+ .+++|++|++++|.++ .+|.++..+++|++|++++|++++
T Consensus 221 --L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 221 --LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp --EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred --EECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcCCc
Confidence 4444444444444333 4555555555555554 455566666777777777777663
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=256.66 Aligned_cols=285 Identities=19% Similarity=0.226 Sum_probs=228.5
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|++. .++..
T Consensus 34 ~l~~l~~~~~~l~-------------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-------------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEK 96 (332)
T ss_dssp ETTEEECCSSCCS-------------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGG
T ss_pred cCCEEECCCCCcc-------------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHh
Confidence 6899999999887 566554 358999999999999888889999999999999999998 55555
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc--cCCCc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG--SLVSS 286 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~ 286 (551)
.+..+++|++|++++|.+..... .+. ++|++|++++|.+....+.. +..+++|+.|++++|.++. ..+..
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGV-----FSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGG-----GSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred HhhCcCCCCEEECCCCcCCccCc-ccc--ccCCEEECCCCccCccCHhH-----hCCCccCCEEECCCCccccCCCCccc
Confidence 66789999999999999985443 333 79999999999998755443 8899999999999999964 55666
Q ss_pred c-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC
Q 046908 287 F-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN 365 (551)
Q Consensus 287 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n 365 (551)
+ .+ +|++|++++|.++ .+|..+. ++|++|++++|.+++..|.. |..+++|+.|++++|
T Consensus 169 ~~~l-~L~~L~l~~n~l~-------~l~~~~~--~~L~~L~l~~n~i~~~~~~~-----------l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLT-------GIPKDLP--ETLNELHLDHNKIQAIELED-----------LLRYSKLYRLGLGHN 227 (332)
T ss_dssp SCSC-CCSCCBCCSSBCS-------SCCSSSC--SSCSCCBCCSSCCCCCCTTS-----------STTCTTCSCCBCCSS
T ss_pred ccCC-ccCEEECcCCCCC-------ccCcccc--CCCCEEECCCCcCCccCHHH-----------hcCCCCCCEEECCCC
Confidence 6 44 9999999999987 5666554 78999999999998655554 467788999999999
Q ss_pred cCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC------CCCCeEECCCCcc
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL------NFLSNFNVSYNNL 439 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l------~~L~~l~l~~N~l 439 (551)
.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|... +.|+.+++++|++
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 999877788999999999999999998 677778999999999999999997777777653 5688999999998
Q ss_pred c--cCCCC-CccCCccCCcccCCC
Q 046908 440 S--GPTPD-KEQFATFDESSYTGN 460 (551)
Q Consensus 440 ~--~~~~~-~~~~~~~~~~~~~~n 460 (551)
. +..|. ...+..+..+++.+|
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccCcccccccchhhhhhcccc
Confidence 6 33332 334455556666554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-32 Score=262.01 Aligned_cols=251 Identities=25% Similarity=0.376 Sum_probs=196.8
Q ss_pred CCccEEEccCCcccc--cCCcccccCCCCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCC
Q 046908 165 QKLIYLDMPKNIFEG--DIPYSIGEMKELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 241 (551)
.+++.|++++|.+.+ .+|..+.++++|+.|++++ |++.+.+|..+ ..+++|++|++++|.+++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356777777777776 6677777777777777774 77766666554 4577777777777777777777777777788
Q ss_pred EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-ccc-ccceeeccccccccCccceeccCcccccc
Q 046908 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLS-SVKHLYLQKNAITGDNKFFGRIPYQINEL 319 (551)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~l 319 (551)
+|++++|.+++. +|..+..+++|++|++++|.+++..+..+ .++ +|++|++++|.++ +.+|..+..+
T Consensus 129 ~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~------~~~~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGT-----LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT------GKIPPTFANL 197 (313)
T ss_dssp EEECCSSEEESC-----CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE------EECCGGGGGC
T ss_pred EEeCCCCccCCc-----CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee------ccCChHHhCC
Confidence 888887777763 33447777888888888888876666655 565 7888888888765 2667777777
Q ss_pred CCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccc
Q 046908 320 SNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 320 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
+ |++|++++|.+++..|.. |..+++|+.|++++|.+++..+. +..+++|++|++++|++++.+|..+
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVL-----------FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp C-CSEEECCSSEEEECCGGG-----------CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred c-ccEEECcCCcccCcCCHH-----------HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 6 899999999888766654 46778889999999998866554 7888999999999999998899999
Q ss_pred cCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcccc
Q 046908 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 400 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 99999999999999999988886 888999999999998443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=255.42 Aligned_cols=251 Identities=22% Similarity=0.248 Sum_probs=215.0
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
....++.++..+. .+|..+. ++++.|++++|++. .++...|..+++|++|+|++|.+....+.+|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 4555443 68999999999998 666667788999999999999999888889999999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccc-cccCccceeccCc-cccccCCC
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNA-ITGDNKFFGRIPY-QINELSNL 322 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~-~~~~l~~L 322 (551)
++|.++...+.. |..+++|++|++++|.++...+..+ .+++|++|++++|. ++ .++. .+..+++|
T Consensus 120 ~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-------~i~~~~~~~l~~L 187 (440)
T 3zyj_A 120 FDNRLTTIPNGA-----FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-------YISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCSSCCTTT-----SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------EECTTTTTTCSSC
T ss_pred CCCcCCeeCHhH-----hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-------eeCcchhhccccc
Confidence 999998765544 8899999999999999998888777 89999999999854 33 4443 58889999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|.++ .+|. +..+++|+.|+|++|.+++..|..|.++++|++|++++|++++..+..|.++
T Consensus 188 ~~L~L~~n~l~-~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CEEECTTSCCS-SCCC------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CeecCCCCcCc-cccc------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 99999999988 5553 4678899999999999998888999999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+.|+|++|++++..+..|..+++|+.|++++|++.|.+.-
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999987778889999999999999999887754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=254.78 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=215.2
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
....++.++..+.. +|..+. ++++.|++++|++. .++...|..+++|++|++++|.+.+..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45678888888874 555443 68999999999998 566666778999999999999999988899999999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeecccc-ccccCccceeccCc-cccccCCC
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN-AITGDNKFFGRIPY-QINELSNL 322 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~l~~L 322 (551)
++|.++...+.. |..+++|++|++++|.++...+..+ .+++|++|++++| .++ .++. .+..+++|
T Consensus 131 ~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-------~i~~~~~~~l~~L 198 (452)
T 3zyi_A 131 FDNWLTVIPSGA-----FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-------YISEGAFEGLFNL 198 (452)
T ss_dssp CSSCCSBCCTTT-----SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------EECTTTTTTCTTC
T ss_pred CCCcCCccChhh-----hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------ccChhhccCCCCC
Confidence 999998766554 8889999999999999998888777 8999999999985 343 4444 57889999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|.++ .+|. +..+++|+.|+|++|.+++..|..|.++++|+.|++++|++++..+..|.++
T Consensus 199 ~~L~L~~n~l~-~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 199 KYLNLGMCNIK-DMPN------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CEEECTTSCCS-SCCC------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CEEECCCCccc-cccc------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 99999999998 3443 4678899999999999998889999999999999999999998888899999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++|+.|++++|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999977778889999999999999999888764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=246.04 Aligned_cols=232 Identities=23% Similarity=0.279 Sum_probs=147.7
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc--CCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ--IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+++.|++++|++. .+|...+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. ++..+..++
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------l~~~~~~l~ 101 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------MSSNFLGLE 101 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE------EEEEEETCT
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc------ChhhcCCCC
Confidence 3444444444443 34444334444444444444444321 12233334444444444444432 222244455
Q ss_pred CCCEEECCCCcccccCC-Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc-cCChhhhhhh
Q 046908 268 SLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG-HIPNELCHVS 344 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~ 344 (551)
+|++|++++|.+++..+ ..+ .+++|++|++++|.++. ..+..+..+++|++|++++|.+.+ ..|..
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----- 170 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------AFNGIFNGLSSLEVLKMAGNSFQENFLPDI----- 170 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE------CSTTTTTTCTTCCEEECTTCEEGGGEECSC-----
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc------cchhhcccCcCCCEEECCCCccccccchhH-----
Confidence 55555555555554443 223 55566666666665541 334456666777777777777664 34443
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+.
T Consensus 171 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 171 ------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 35667788888888888877788888899999999999999987777889999999999999999988888888
Q ss_pred CCC-CCCeEECCCCccccCCCC
Q 046908 425 GLN-FLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 425 ~l~-~L~~l~l~~N~l~~~~~~ 445 (551)
.++ +|++|++++|++++.++.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCCEEEccCCCeecccCh
Confidence 884 899999999999887653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=251.10 Aligned_cols=282 Identities=20% Similarity=0.178 Sum_probs=178.2
Q ss_pred CCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 103 PTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 103 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
.++.....+.+++.++.+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.+..+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT-------------YISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCc-------------ccCHHHhccCCCCCEEECCCCccCccCH
Confidence 34455567778888888876554 36777777777776 4444444446777777777777776666
Q ss_pred cccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC-cccCCCCCCCEEeccccc-ccCcCCCchhh
Q 046908 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNH-FSGKMDDANIL 260 (551)
Q Consensus 183 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 260 (551)
..|.++++|++|++++|+++ .++...+..+++|++|++++|++..... ..|..+++|++|++++|. +....+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---- 168 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---- 168 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----
T ss_pred hhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----
Confidence 66777777777777777776 5666666667777777777776665443 356666666666666663 3332221
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
.+..+++|++|++++|.+++.. |..+..+++|++|++++|.+. .+|..
T Consensus 169 -~~~~l~~L~~L~l~~n~l~~~~-----------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~~- 216 (353)
T 2z80_A 169 -DFAGLTFLEELEIDASDLQSYE-----------------------------PKSLKSIQNVSHLILHMKQHI-LLLEI- 216 (353)
T ss_dssp -TTTTCCEEEEEEEEETTCCEEC-----------------------------TTTTTTCSEEEEEEEECSCST-THHHH-
T ss_pred -HccCCCCCCEEECCCCCcCccC-----------------------------HHHHhccccCCeecCCCCccc-cchhh-
Confidence 2444555555555555444443 444445555555555555543 22221
Q ss_pred hhhhchhhHhhhccccCceEecCCCcCcccCCccc---cCCCCCcEEEcCCCCCCC----cccccccCCCCCCEEeCCCC
Q 046908 341 CHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI---GQLQNIRALNLSNNFLSG----AIPESFSNLKMTESLDLSHN 413 (551)
Q Consensus 341 ~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n 413 (551)
.+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+.++++|+.|++++|
T Consensus 217 ---------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 217 ---------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ---------hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 12344555555555555554333222 234667778888877765 35677888999999999999
Q ss_pred cCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+++...+..|..+++|++|++++|++.|.+|.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99844334468899999999999999987764
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=249.90 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=209.1
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
.|+.....+.+++. ...+|... .++|++|++++|+++.++. .+.++++|++|++++|.++ .+
T Consensus 29 ~C~~~~~c~~~~~~-l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~ 91 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-------------TI 91 (353)
T ss_dssp EECTTSEEECCSTT-CSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-------------EE
T ss_pred CCCCCeEeeCCCCC-cccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-------------cc
Confidence 45566667777665 34455432 2489999999999988876 7899999999999999998 45
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCCh-hhhhCCCCCCEEECcCC-cccccCCccc
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ-PIVSGCVALDLFDLSNN-NFFGQIFPKY 234 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 234 (551)
+...+..+++|++|++++|.+.+..+..+.++++|++|++++|++. .+|. ..+..+++|++|++++| .+....+..|
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 4444455899999999999999766666999999999999999998 7877 67788999999999999 5777778899
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccC
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
.++++|++|++++|.+++..+. .+..+++|++|++++|.+.......+ .+++|++|++++|.++.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--------- 236 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT--------- 236 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTT-----TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT---------
T ss_pred cCCCCCCEEECCCCCcCccCHH-----HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc---------
Confidence 9999999999999999875443 48888888888888888765544433 46677777777776652
Q ss_pred ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc----cCCccccCCCCCcEEEcCCC
Q 046908 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG----EIPREIGQLQNIRALNLSNN 389 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n 389 (551)
..+..+.. ......++.++++++.+++ .+|..+..+++|++|++++|
T Consensus 237 ---------------------~~~~~l~~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 237 ---------------------FHFSELST--------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---------------------CCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ---------------------cccccccc--------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 11111100 0122334444555444443 35667788888888888888
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
+++...+..|.++++|+.|++++|++.+.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 88855445568888899999999988754
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-31 Score=281.74 Aligned_cols=406 Identities=17% Similarity=0.072 Sum_probs=289.2
Q ss_pred CCCCCCCEEECcCCCCc---ccCCccCC------------CCCCCCEEEcccCcCccccchhccCC--CCCCEeeCCCCc
Q 046908 4 CNLKNLFELDLSSNNFE---GHIPQCLN------------NLTHLKVLDISNNQLSGKVPSTLTNL--TSLEYLDRFSIN 66 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~ 66 (551)
.++++|++|+|+++... +..|..+. .+++|++|+|++|.+++..+..+... .+|++|+++++.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 46889999999886421 23333333 78999999999999987777766663 459999998886
Q ss_pred cccccC-hhhhcCCCCCCEEEcccCcccccc---cCCCccCCCCccEEEccCCCCC-----CCchhhhCCCCCCEEEccC
Q 046908 67 FQGTIS-INSLANHSKLEVLLISSGSNMLQV---KTETWHPTSQLKVLKLSDCHLH-----VIPSFLLQHYHLIFLDLSN 137 (551)
Q Consensus 67 ~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~Ls~ 137 (551)
...... ......+++|++|++++|...... .......+++|++|++++|.++ .++..+..+++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 221111 122357899999999998753321 1113456789999999999996 3445667899999999999
Q ss_pred CcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCccc---ccCCcccccCCCCcEEECcCCccceeCChhhhhCCC
Q 046908 138 NKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFE---GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV 214 (551)
Q Consensus 138 n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 214 (551)
|.+. .++.. +..+++|+.|+++..... ...+..+..+++|+.|+++++... .+|. .+..++
T Consensus 230 ~~~~-------------~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~ 293 (592)
T 3ogk_B 230 FEIL-------------ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAA 293 (592)
T ss_dssp CBGG-------------GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGG
T ss_pred ccHH-------------HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcC
Confidence 9887 56644 445899999999864332 234456778899999999886443 4554 445688
Q ss_pred CCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCC-----------Cccccc
Q 046908 215 ALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE-----------NSLSGS 282 (551)
Q Consensus 215 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~ 282 (551)
+|++|++++|.+++... ..+..+++|++|+++ +.+... .++.....+++|++|++++ +.+++.
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~----~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR----GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH----HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH----HHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 99999999999765433 346789999999999 444321 4555567899999999993 566544
Q ss_pred CCCcc--cccccceeeccccccccCccceeccCccccc-cCCCceEEec----CCcccccCChhhhhhhchhhHhhhccc
Q 046908 283 LVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINE-LSNLHVLLLR----GNSLQGHIPNELCHVSRFLHRFYSNLK 355 (551)
Q Consensus 283 ~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~~~~~~~~l~~~~~~~l~ 355 (551)
....+ .+++|++|++..|.+++ ..+..+.. +++|+.|+++ .|.+++. |..- .+ ...+.+++
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~------~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~-~~----~~~~~~~~ 436 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITN------ESLESIGTYLKNLCDFRLVLLDREERITDL-PLDN-GV----RSLLIGCK 436 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCH------HHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHH-HH----HHHHHHCT
T ss_pred HHHHHHhhCccCeEEEeecCCccH------HHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHH-HH----HHHHHhCC
Confidence 33222 68999999998887763 33444544 8899999997 5566632 2110 01 11256789
Q ss_pred cCceEecCCCc--CcccCCccc-cCCCCCcEEEcCCCCCCCc-ccccccCCCCCCEEeCCCCcCccc-CCCCCCCCCCCC
Q 046908 356 YMAGLDLSSNE--LSGEIPREI-GQLQNIRALNLSNNFLSGA-IPESFSNLKMTESLDLSHNRLSGH-IPPQLTGLNFLS 430 (551)
Q Consensus 356 ~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~ 430 (551)
+|+.|++++|. +++..+..+ ..+++|++|++++|++++. .+..+.++++|+.|++++|.+++. ++..+..+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 99999998654 665544444 3488999999999999863 455568899999999999998654 333445688999
Q ss_pred eEECCCCccccC
Q 046908 431 NFNVSYNNLSGP 442 (551)
Q Consensus 431 ~l~l~~N~l~~~ 442 (551)
+|++++|+++..
T Consensus 517 ~L~ls~n~it~~ 528 (592)
T 3ogk_B 517 YLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCBCCTT
T ss_pred eeECcCCcCCHH
Confidence 999999998654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=246.65 Aligned_cols=228 Identities=24% Similarity=0.285 Sum_probs=187.7
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++++.|++++|.+.+..+..|.++++|+.|++++|++. .++...|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46777777777777777777888888888888888887 66666677788888888888888877777788888888888
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcc-cccccceeeccccccccCccceeccCccccccCCC
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
+++|.++...+.. |..+++|++|++++| .+....+..+ ++++|++|++++|.++ .+| .+..+++|
T Consensus 143 L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-------~~~-~~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-------EIP-NLTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-------SCC-CCTTCSSC
T ss_pred CCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-------ccc-ccCCCccc
Confidence 8888887655443 778888888888884 4555555566 7888999999999887 455 46788999
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
++|++++|++++..|.. |.++++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+
T Consensus 210 ~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGS-----------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CEEECTTSCCCEECTTT-----------TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred CEEECCCCccCccChhh-----------hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 99999999998666655 4778899999999999998889999999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcc
Q 046908 403 KMTESLDLSHNRLSG 417 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~ 417 (551)
++|+.|++++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999999863
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=246.99 Aligned_cols=248 Identities=21% Similarity=0.255 Sum_probs=213.6
Q ss_pred CCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChh
Q 046908 129 HLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
..+.++.++..++ .+|..+ .++++.|++++|.+.+..+..|.++++|+.|++++|++. .++..
T Consensus 55 ~~~~v~c~~~~l~-------------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~ 117 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-------------EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVG 117 (452)
T ss_dssp SSCEEECCSSCCS-------------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred CCcEEEECCCCcC-------------ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChh
Confidence 4678888888887 666544 358999999999999988999999999999999999998 66666
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSF 287 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 287 (551)
.|.++++|++|+|++|+++...+..|..+++|++|++++|.++...... |..+++|+.|++++| .+.......+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccChhhc
Confidence 7788999999999999999888888999999999999999998765544 889999999999984 5666666666
Q ss_pred -cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCc
Q 046908 288 -NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE 366 (551)
Q Consensus 288 -~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~ 366 (551)
++++|++|++++|.++ .+| .+..+++|++|++++|++++..|.. |.++++|+.|++++|.
T Consensus 193 ~~l~~L~~L~L~~n~l~-------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIK-------DMP-NLTPLVGLEELEMSGNHFPEIRPGS-----------FHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TTCTTCCEEECTTSCCS-------SCC-CCTTCTTCCEEECTTSCCSEECGGG-----------GTTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCccc-------ccc-cccccccccEEECcCCcCcccCccc-----------ccCccCCCEEEeCCCc
Confidence 8999999999999987 444 4778899999999999998666654 4778899999999999
Q ss_pred CcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 367 LSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 998888899999999999999999998888889999999999999998864
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=237.02 Aligned_cols=252 Identities=20% Similarity=0.209 Sum_probs=217.0
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.++.+++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.++... ..+..+..+++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG---CCSQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---EEEHHHHSCSCCCE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---CcccccccccccCE
Confidence 56788888887 888755 468999999999999777777899999999999999987432 22455778999999
Q ss_pred EECCCCcccccCCCcccccccceeeccccccccCccceeccC--ccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 272 IDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP--YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 272 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
|++++|.+.+.......+++|++|++++|.++ .++ ..+..+++|++|++++|.+.+..|..
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 145 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------- 145 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEE-------SSTTTTTTTTCTTCCEEECTTSCCEECSTTT----------
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCccc-------ccccchhhhhccCCCEEECCCCcCCccchhh----------
Confidence 99999999876655448999999999999987 444 46888999999999999998766654
Q ss_pred hhhccccCceEecCCCcCcc-cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSG-EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus 146 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp -TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred -cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 4678899999999999986 57889999999999999999999888899999999999999999999877778899999
Q ss_pred CCeEECCCCccccCCCC-CccC-CccCCcccCCCCCCCCccc
Q 046908 429 LSNFNVSYNNLSGPTPD-KEQF-ATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~~-~~~~-~~~~~~~~~~n~~~c~~~~ 468 (551)
|++|++++|++++..+. ...+ ..+..+++.+|++.|+|..
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999999999988776 3444 4788999999999999864
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=235.16 Aligned_cols=249 Identities=20% Similarity=0.228 Sum_probs=151.4
Q ss_pred cEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCE
Q 046908 192 YMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271 (551)
Q Consensus 192 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 271 (551)
+.++.+++.++ .+|... .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-----AFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTCTTCCE
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-----hcCCccCCCE
Confidence 34444444444 444332 34555555555555555445555555555555555555543222 2555555555
Q ss_pred EECCCCc-ccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 272 IDIFENS-LSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 272 L~l~~n~-l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
|++++|. +....+..+ .+++|++|++++|.++. ..|..+..+++|++|++++|++++..+..
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 148 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQALPDDT---------- 148 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------ECHhHhhCCcCCCEEECCCCcccccCHhH----------
Confidence 5555554 444444444 55666666666665541 22444566666777777777666333222
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|+.|++++|++++..+..+..+++|
T Consensus 149 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 -FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp -TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred -hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 3556677777777777775555567778888888888888887777778888888888888888886655667778888
Q ss_pred CeEECCCCccccCCCCCccCCccCCcccCCCCCCCCc
Q 046908 430 SNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGS 466 (551)
Q Consensus 430 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~ 466 (551)
++|++++|++.+.++......++.......+...|..
T Consensus 228 ~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 8888888888776655433344444444555555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-30 Score=274.17 Aligned_cols=406 Identities=13% Similarity=0.061 Sum_probs=289.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCCC-CC-CCCEEEcccCc-Ccc-ccchhccCCCCCCEeeCCCCccccccC---hhhhc
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNN-LT-HLKVLDISNNQ-LSG-KVPSTLTNLTSLEYLDRFSINFQGTIS---INSLA 77 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~ 77 (551)
++++|++|+|++|.+++..+..+.. ++ +|++|+|++|. ++. ..+....++++|++|++++|.+.+.-. ...+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6899999999999888666666655 34 49999999986 221 123334588999999999998764421 12456
Q ss_pred CCCCCCEEEcccCcccc---cccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccc
Q 046908 78 NHSKLEVLLISSGSNML---QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG 154 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 154 (551)
.+++|++|++++|.... ......+..+++|++|++++|.+..++..+..+++|++|+++........+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--------- 260 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP--------- 260 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT---------
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH---------
Confidence 78999999999987641 111223567899999999999998899999999999999998643221000
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc-cCCcc
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG-QIFPK 233 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 233 (551)
..+..+. .+++|+.++++++.. ...|..+..+++|+.|++++|.+++.....++..+++|++|+++ +.+.. ..+..
T Consensus 261 ~~~~~l~-~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 261 EKYMNLV-FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp TSSSCCC-CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHHHHhh-ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 1111222 267899999988643 35677788899999999999997655444556789999999999 44433 33333
Q ss_pred cCCCCCCCEEeccc-----------ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeecc--
Q 046908 234 YMNLTHLHWLYLDN-----------NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQ-- 298 (551)
Q Consensus 234 ~~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~-- 298 (551)
+..+++|++|++++ |.++.. .+......+++|++|+++.|.+++.....+ .+++|++|++.
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHH----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 46789999999993 455431 344445679999999998888887655555 48999999997
Q ss_pred --ccccccCccceeccCccccccCCCceEEecCCc--ccccCChhhhhhhchhhHhhhccccCceEecCCCcCccc-CCc
Q 046908 299 --KNAITGDNKFFGRIPYQINELSNLHVLLLRGNS--LQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE-IPR 373 (551)
Q Consensus 299 --~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 373 (551)
.|.+++.. ....++..+..+++|+.|++++|. +++..+..+ ...+++|+.|++++|.+++. ++.
T Consensus 414 ~~~n~l~~~p-~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 414 DREERITDLP-LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp SCCSCCSSCC-CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCccccCch-HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCCCCHHHHHH
Confidence 45555200 000133446779999999998654 543333322 24578999999999999863 445
Q ss_pred cccCCCCCcEEEcCCCCCCCc-ccccccCCCCCCEEeCCCCcCcccCCCCC-CCCCCCCeEECCCC
Q 046908 374 EIGQLQNIRALNLSNNFLSGA-IPESFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYN 437 (551)
Q Consensus 374 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N 437 (551)
.+.++++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ ..++.+....+..+
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 568899999999999998754 34445678999999999999886533323 34566655555443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=233.93 Aligned_cols=224 Identities=18% Similarity=0.204 Sum_probs=159.6
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCC
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKS 268 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~ 268 (551)
.+++.|++++|++. .+|..++. +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR------ALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC------CCCGGGGGCTT
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc------cCcHHHhcCcC
Confidence 34444444444444 44443332 444444444444444 33444445555555555555444 12223455555
Q ss_pred CCEEECCCCcccccCCCcc----------cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 269 LELIDIFENSLSGSLVSSF----------NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~----------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
|++|++++|.+.+..+..+ ++++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~-~l~~ 223 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLS-ALGP 223 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCC-CCCG
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCC-cCch
Confidence 5555555544444443332 4888999999999887 77888889999999999999998 4555
Q ss_pred hhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 339 ELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 339 ~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
. +..+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|..+.++++|+.|++++|.+.+.
T Consensus 224 ~-----------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 224 A-----------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp G-----------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred h-----------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 4 36778899999999999889999999999999999999999889998899999999999999999999
Q ss_pred CCCCCCCCCCCCeEECCCCccc
Q 046908 419 IPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 419 ~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
+|..+..+++|+.+++..|.+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSC
T ss_pred ccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999877664
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=229.87 Aligned_cols=229 Identities=19% Similarity=0.193 Sum_probs=193.5
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
..+++++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|+++++|++|++++|.+. .++ ..+..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP-ASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc-HHHhcCcCCCE
Confidence 3578999999999999 67878889999999999999999 88999999999999999999998 565 35889999999
Q ss_pred EEcccCcccccccCCC--------ccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 85 LLISSGSNMLQVKTET--------WHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~--------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
|++++|+....++... +..+++|++|++++|.++.+|..+..+++|++|++++|.++ .+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-------------~l 221 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------------AL 221 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-------------CC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-------------cC
Confidence 9999988777776642 34588999999999999999988999999999999999887 56
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCC
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 236 (551)
|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+ ..+++|++|++++|.+.+.+|..+..
T Consensus 222 ~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 222 GPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred chhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhh
Confidence 66544 47888899998888888888888888888888888888877777664 55888888888888888888888888
Q ss_pred CCCCCEEecccccccC
Q 046908 237 LTHLHWLYLDNNHFSG 252 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~ 252 (551)
+++|+.+++..+.+..
T Consensus 300 L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQ 315 (328)
T ss_dssp SCTTCEEECCGGGSCC
T ss_pred ccCceEEeCCHHHHHH
Confidence 8888888887765543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=222.08 Aligned_cols=269 Identities=18% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
-++++.++++++ .+|..+ .++|++|++++|.+++..++.|.++++|++|++++|.+.+.. ...+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCC
Confidence 368889888888 445433 478999999999999777788899999999999988877443 3456666666666666
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCCC-chhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI-PSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
+|.....+++..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------------- 141 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--------------------------- 141 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---------------------------
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc---------------------------
Confidence 66544444444556666666666666666444 23444455555555555544
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
.+..+..|..+++|+.|++++|+++ .++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 142 ----------~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 142 ----------QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----------cccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 4444444555566666666666665 45544455566666666666666666566666666666666666
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccc--cCCCceE
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINE--LSNLHVL 325 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~--l~~L~~L 325 (551)
|.+++.. +..+..+++|++|++++|.+....+...-...++.+....+.+.. ..|..+.+ +..++..
T Consensus 211 n~l~~~~-----~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c------~~p~~l~g~~l~~l~~~ 279 (285)
T 1ozn_A 211 NNLSALP-----TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC------SLPQRLAGRDLKRLAAN 279 (285)
T ss_dssp SCCSCCC-----HHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE------EESGGGTTCBGGGSCGG
T ss_pred CcCCcCC-----HHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc------CCchHhCCcChhhcCHH
Confidence 6665422 233566666666666666665433221122334444444444432 44544433 3444444
Q ss_pred EecCC
Q 046908 326 LLRGN 330 (551)
Q Consensus 326 ~l~~n 330 (551)
++++|
T Consensus 280 ~l~~C 284 (285)
T 1ozn_A 280 DLQGC 284 (285)
T ss_dssp GSCCC
T ss_pred HhccC
Confidence 44444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=241.43 Aligned_cols=260 Identities=22% Similarity=0.241 Sum_probs=140.3
Q ss_pred ccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccc
Q 046908 107 LKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186 (551)
Q Consensus 107 L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 186 (551)
++.|++++|.++.+|..+. ++|++|++++|.++ .+|. .+++|+.|++++|.++. +|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-------------~lp~----~l~~L~~L~Ls~N~l~~-lp~--- 98 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-------------SLPA----LPPELRTLEVSGNQLTS-LPV--- 98 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-------------CCCC----CCTTCCEEEECSCCCSC-CCC---
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-------------CCCC----cCCCCCEEEcCCCcCCc-CCC---
Confidence 4455555555555444332 44555555555544 3332 13455555555555542 222
Q ss_pred cCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 187 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
.+++|+.|++++|++. .+|. .+++|+.|++++|+++... . .+++|++|++++|.+++++. .+
T Consensus 99 ~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~~---------~~ 160 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA---------LP 160 (622)
T ss_dssp CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC---------CC
T ss_pred CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcCC---------cc
Confidence 3455555555555554 3443 2455555555555554422 1 13555566666655553221 23
Q ss_pred CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhch
Q 046908 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF 346 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 346 (551)
++|+.|++++|.+++.+ ..+++|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.
T Consensus 161 ~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-------~l~~~---~~~L~~L~L~~N~l~-~l~~-------- 218 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-------SLPTL---PSELYKLWAYNNRLT-SLPA-------- 218 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-------CCCCC---CTTCCEEECCSSCCS-SCCC--------
T ss_pred CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-------CCCCc---cchhhEEECcCCccc-ccCC--------
Confidence 45566666666655543 12456666666666555 33332 255666666666665 3332
Q ss_pred hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 347 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
.+++|+.|++++|.+++ +| ..+++|+.|++++|+|+. +|. .+++|+.|++++|+++ .+|..+..+
T Consensus 219 ------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 219 ------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp ------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred ------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 12456666666666663 44 344667777777777763 333 4566777777777776 556666677
Q ss_pred CCCCeEECCCCccccCCC
Q 046908 427 NFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 427 ~~L~~l~l~~N~l~~~~~ 444 (551)
++|+.|++++|++++..+
T Consensus 284 ~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCEEECCSCCCCHHHH
T ss_pred cccCEEEecCCCCCCcCH
Confidence 777777777777665443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=237.40 Aligned_cols=267 Identities=22% Similarity=0.220 Sum_probs=185.8
Q ss_pred CCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEE
Q 046908 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLL 86 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (551)
.+++.|++++|+++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|++++|.+.+ ++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEE
Confidence 36889999999998 5666565 89999999999998 4554 57889999999998773 442 677888888
Q ss_pred cccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCC
Q 046908 87 ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQK 166 (551)
Q Consensus 87 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 166 (551)
+++|.+.. ++. .+++|+.|++++|+++.+|.. .++|++|++++|.++ .+|. .+++
T Consensus 108 Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-------------~l~~----~~~~ 162 (622)
T 3g06_A 108 IFSNPLTH-LPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-------------SLPA----LPSE 162 (622)
T ss_dssp ECSCCCCC-CCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-------------CCCC----CCTT
T ss_pred CcCCcCCC-CCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-------------CcCC----ccCC
Confidence 88776443 322 456788888888888777753 367888888888776 3332 1456
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
|+.|++++|.+.+ +| ..+++|+.|++++|++. .+|. .+++|+.|++++|.++... . .+++|+.|+++
T Consensus 163 L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls 229 (622)
T 3g06_A 163 LCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVS 229 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECC
T ss_pred CCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccC-C---CCCCCCEEEcc
Confidence 7778888877775 33 34577777777777776 4553 2467777777777776432 2 24677777777
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEE
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLL 326 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~ 326 (551)
+|.+++++ ..+++|+.|++++|.++..+. .+++|++|++++|.|+ .+|..+..+++|+.|+
T Consensus 230 ~N~L~~lp---------~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-------~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 230 GNRLTSLP---------VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-------RLPESLIHLSSETTVN 290 (622)
T ss_dssp SSCCSCCC---------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-------SCCGGGGGSCTTCEEE
T ss_pred CCccCcCC---------CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-------cCCHHHhhccccCEEE
Confidence 77776532 334677777777777775544 4567777777777766 5666677777777777
Q ss_pred ecCCcccccCChhhhh
Q 046908 327 LRGNSLQGHIPNELCH 342 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~ 342 (551)
+++|++++..|..+..
T Consensus 291 L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 291 LEGNPLSERTLQALRE 306 (622)
T ss_dssp CCSCCCCHHHHHHHHH
T ss_pred ecCCCCCCcCHHHHHh
Confidence 7777777666655543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-27 Score=228.08 Aligned_cols=219 Identities=23% Similarity=0.209 Sum_probs=111.2
Q ss_pred cCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 187 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
.+++|+.|++++|++. .++...+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +...
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----------l~~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE----------LLVG 98 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE----------EEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc----------ccCC
Confidence 3344444444444444 3333333444444444444444443322 4444555555555554443 1222
Q ss_pred CCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhch
Q 046908 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRF 346 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 346 (551)
++|++|++++|.+++..+.. +++|++|++++|.++. ..+..+..+++|++|++++|.+++..|..+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------ 164 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------ 164 (317)
T ss_dssp TTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCS------GGGBCTGGGSSEEEEECTTSCCCEEEGGGG------
T ss_pred CCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCC------ccchhhhccCCCCEEECCCCCCCcccHHHH------
Confidence 45555555555555443332 3455555555555541 223345555566666666666554333332
Q ss_pred hhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 347 LHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 347 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
+..+++|++|++++|.+++. + ....+++|++|++++|++++. +..+..+++|+.|++++|+++ .+|..+..+
T Consensus 165 ----~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 165 ----AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp ----GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ----hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 23445566666666666533 2 222356666666666666633 333566666666666666666 345556666
Q ss_pred CCCCeEECCCCccc
Q 046908 427 NFLSNFNVSYNNLS 440 (551)
Q Consensus 427 ~~L~~l~l~~N~l~ 440 (551)
++|+.|++++|++.
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 66666666666665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=231.65 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=192.6
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccc-eeCChhhh------hCCCCCCEEECcCCcccccCCccc--
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS-GELPQPIV------SGCVALDLFDLSNNNFFGQIFPKY-- 234 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~-- 234 (551)
.++|+.+++++|.+ .+|..+... |+.|++++|++. ..+|.... .++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44677777777777 455555443 777788888773 34555442 247888999999998887777765
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccC-----CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccc
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQL-----KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKF 308 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~ 308 (551)
..+++|++|++++|.+++. + ..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|++.+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~-----~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 189 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-D-----AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-- 189 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-S-----SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH--
T ss_pred hcCCCccEEEccCCCCcch-h-----HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch--
Confidence 7889999999999988875 2 224444 899999999999998887777 8899999999999865200
Q ss_pred eeccCccc--cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC-ccccCCCCCcEEE
Q 046908 309 FGRIPYQI--NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP-REIGQLQNIRALN 385 (551)
Q Consensus 309 ~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 385 (551)
.++..+ ..+++|++|++++|++++ ++. +....+.++++|+.|++++|.+++..| ..+..+++|++|+
T Consensus 190 --~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 190 --GLISALCPLKFPTLQVLALRNAGMET-PSG-------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp --HHHHHSCTTSCTTCCEEECTTSCCCC-HHH-------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred --HHHHHHHhccCCCCCEEECCCCcCcc-hHH-------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 123333 788999999999999872 211 122335788999999999999997764 5567789999999
Q ss_pred cCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCcccc
Q 046908 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 386 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 441 (551)
+++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999 6666665 8999999999999966 66 8999999999999999975
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-28 Score=233.96 Aligned_cols=260 Identities=16% Similarity=0.118 Sum_probs=139.0
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
.++..+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 35566666666665555556677788888888888887777788888888888888888775443 666677777777
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
++|.+... + ..++|++|++++|.+..++.. .+++|++|++++|.++
T Consensus 88 s~n~l~~l-~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~-------------------------- 133 (317)
T 3o53_A 88 NNNYVQEL-L-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKIT-------------------------- 133 (317)
T ss_dssp CSSEEEEE-E-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCC--------------------------
T ss_pred cCCccccc-c-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCC--------------------------
Confidence 66653321 1 124566666666665444321 2344555555555444
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
+..+..+..+++|+.|++++|++.+..+..++..+++|++|++++|.+++.. ....+++|++|++++
T Consensus 134 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 134 -----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSS 200 (317)
T ss_dssp -----------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCS
T ss_pred -----------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCC
Confidence 4334444444444444444444443223333233444555555555444331 112244555555555
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|.+++. +..+..+++|++|++++|.+++.+.....+++|++|++++|.+++ +.+|.++..+++|+.+++
T Consensus 201 N~l~~l------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 201 NKLAFM------GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp SCCCEE------CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHH
T ss_pred CcCCcc------hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEEC
Confidence 554421 122444455555555555555433222244555555555554431 133444455555555555
Q ss_pred c
Q 046908 328 R 328 (551)
Q Consensus 328 ~ 328 (551)
+
T Consensus 270 ~ 270 (317)
T 3o53_A 270 Q 270 (317)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-29 Score=263.52 Aligned_cols=402 Identities=15% Similarity=0.125 Sum_probs=274.3
Q ss_pred CCCCCCCEEECcCCCCcc---cCCcc------------CCCCCCCCEEEcccCcCccccchhcc-CCCCCCEeeCCCCc-
Q 046908 4 CNLKNLFELDLSSNNFEG---HIPQC------------LNNLTHLKVLDISNNQLSGKVPSTLT-NLTSLEYLDRFSIN- 66 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~~---~~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~- 66 (551)
.++++|++|+++++.... ..|.. +..+++|++|+|++|.+++..+..+. .+++|++|++++|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 457899999999875321 22221 24678999999999999877777775 68999999999884
Q ss_pred cccccChhhhcCCCCCCEEEcccCccccccc---CCCccCCCCccEEEccCCC--C--CCCchhhhCCCCCCEEEccCC-
Q 046908 67 FQGTISINSLANHSKLEVLLISSGSNMLQVK---TETWHPTSQLKVLKLSDCH--L--HVIPSFLLQHYHLIFLDLSNN- 138 (551)
Q Consensus 67 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~--l--~~l~~~~~~~~~L~~L~Ls~n- 138 (551)
+........+..+++|++|++++|.+..... ......+++|++|++++|. + ..++.....+++|++|++++|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 4322122334589999999999987443221 1233467899999999997 2 123334456899999999998
Q ss_pred cccccCCCCCCCcccccCChhHhhhcCCccEEEccCCc-------ccccCCcccccCCCCcEE-ECcCCccceeCChhhh
Q 046908 139 KVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI-------FEGDIPYSIGEMKELYMQ-DLSRNNFSGELPQPIV 210 (551)
Q Consensus 139 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~ 210 (551)
.+. .++..+. .+++|+.|+++.+. +.+ .+..+.++++|+.+ .+.+.... .++.. +
T Consensus 223 ~~~-------------~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~-~ 285 (594)
T 2p1m_B 223 PLE-------------KLATLLQ-RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAV-Y 285 (594)
T ss_dssp CHH-------------HHHHHHH-HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGG-H
T ss_pred cHH-------------HHHHHHh-cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHH-H
Confidence 333 3444443 48899999966543 333 33467888999998 45443332 34433 2
Q ss_pred hCCCCCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCC---------Cccc
Q 046908 211 SGCVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE---------NSLS 280 (551)
Q Consensus 211 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~---------n~l~ 280 (551)
..+++|++|++++|.+++... ..+..+++|++|++++| +.. ..+......+++|+.|++++ +.++
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH----HHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 357899999999998765332 23568899999999988 432 13444445689999999843 4454
Q ss_pred ccCCCcc--cccccceeeccccccccCccceeccCccc-cccCCCceEEec--C----CcccccCChhhhhhhchhhHhh
Q 046908 281 GSLVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLLLR--G----NSLQGHIPNELCHVSRFLHRFY 351 (551)
Q Consensus 281 ~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~l~~L~~L~l~--~----n~l~~~~p~~~~~~~~l~~~~~ 351 (551)
+.....+ ++++|++|.+..|.+++ .....+ ..+++|+.|+++ + +.++ ..|..- .+ ...+
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~-~~----~~l~ 428 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDI-GF----GAIV 428 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHH-HH----HHHH
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCH------HHHHHHHhhCCCcceeEeecccCCCccccc-CCchhh-HH----HHHH
Confidence 4333333 48899999888887763 223333 358899999999 3 4444 222110 01 1125
Q ss_pred hccccCceEecCCCcCcccCCccccC-CCCCcEEEcCCCCCCCcccccc-cCCCCCCEEeCCCCcCcccCCC-CCCCCCC
Q 046908 352 SNLKYMAGLDLSSNELSGEIPREIGQ-LQNIRALNLSNNFLSGAIPESF-SNLKMTESLDLSHNRLSGHIPP-QLTGLNF 428 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~ 428 (551)
..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ .++++|+.|++++|.+++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 7788999999987 666555555554 8899999999999876554444 6789999999999998654333 3455789
Q ss_pred CCeEECCCCccc
Q 046908 429 LSNFNVSYNNLS 440 (551)
Q Consensus 429 L~~l~l~~N~l~ 440 (551)
|++|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 999999999873
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-27 Score=240.96 Aligned_cols=244 Identities=23% Similarity=0.196 Sum_probs=156.2
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+|+.|++++|.+. .++...+..+++|++|+|++|.+++..+ |..+++|++|++++|.+++. ...++|
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l----------~~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL----------LVGPSI 101 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE----------EECTTC
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC----------CCCCCc
Confidence 4555555555554 3333344455555555555555554333 55566666666666655532 223566
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
++|++++|.+++..+.. +++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+
T Consensus 102 ~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------- 164 (487)
T 3oja_A 102 ETLHAANNNISRVSCSR--GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------- 164 (487)
T ss_dssp CEEECCSSCCCCEEECC--CSSCEEEECCSSCCCS------GGGBCGGGGSSEEEEECTTSCCCEEEGGGG---------
T ss_pred CEEECcCCcCCCCCccc--cCCCCEEECCCCCCCC------CCchhhcCCCCCCEEECCCCCCCCcChHHH---------
Confidence 66666666666655442 4667777777777662 345566777888888888888876666554
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
+..+++|+.|+|++|.+++.. ....+++|++|+|++|.+++.++ .+..+++|+.|++++|.+++ +|..+..++.|
T Consensus 165 -~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 165 -AASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp -GGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred -hhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCC
Confidence 235677888888888887552 23357888888888888886444 47788888888888888884 67778888888
Q ss_pred CeEECCCCccccCC-CC-CccCCccCCcccC-------CCCCCCCccc
Q 046908 430 SNFNVSYNNLSGPT-PD-KEQFATFDESSYT-------GNHELCGSLI 468 (551)
Q Consensus 430 ~~l~l~~N~l~~~~-~~-~~~~~~~~~~~~~-------~n~~~c~~~~ 468 (551)
+.+++++|++.+.. |. ...+..+..+... ++++.|.|+.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 88888888887322 11 2223333333333 6788887653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-29 Score=264.02 Aligned_cols=409 Identities=15% Similarity=0.073 Sum_probs=278.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCC-CCCCCCEEEcccC-cCccc-cchhccCCCCCCEeeCCCCccccccC---hhhhcC
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLN-NLTHLKVLDISNN-QLSGK-VPSTLTNLTSLEYLDRFSINFQGTIS---INSLAN 78 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~ 78 (551)
++++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. .+..+.++++|++|++++|.+.+..+ ......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 578999999999998876666665 6899999999999 56533 44445689999999999998764322 112237
Q ss_pred CCCCCEEEcccCc--ccccccCCCccCCCCccEEEccCCC-CCCCchhhhCCCCCCEEEccCCcccccCCCCCCCccccc
Q 046908 79 HSKLEVLLISSGS--NMLQVKTETWHPTSQLKVLKLSDCH-LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGK 155 (551)
Q Consensus 79 l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 155 (551)
+++|++|+++++. ............+++|++|++++|. +..++..+..+++|++|+++.+... ...+.+. .
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~-~ 256 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----VRPDVYS-G 256 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----CCHHHHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----cchhhHH-H
Confidence 7899999999886 1111111123457899999999994 4668888999999999998765421 1111111 2
Q ss_pred CChhHhhhcCCccEE-EccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccccc-CCcc
Q 046908 156 LPRNMGIVLQKLIYL-DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ-IFPK 233 (551)
Q Consensus 156 l~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~ 233 (551)
++..+ ..+++|+.+ .+.+... ..++..+..+++|+.|++++|.+.+.....+...+++|+.|++++| +... .+..
T Consensus 257 l~~~l-~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 257 LSVAL-SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHH-HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHH-hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 34433 458889998 4444332 2445555678999999999998765444455667899999999988 4322 2222
Q ss_pred cCCCCCCCEEeccc---------ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeecc--c-
Q 046908 234 YMNLTHLHWLYLDN---------NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQ--K- 299 (551)
Q Consensus 234 ~~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~--~- 299 (551)
...+++|++|++.+ +.+++. .+......+++|+.|++..|.+++.....+ .+++|++|+++ +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQ----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHH----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHH----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 23588999999944 334321 222223458999999998888877554444 58999999999 3
Q ss_pred ---cccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc-
Q 046908 300 ---NAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI- 375 (551)
Q Consensus 300 ---n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 375 (551)
+.++.. .....++..+..+++|+.|++++ .+++..+..+ ...+++|+.|++++|.+++..+..+
T Consensus 410 ~~~~~l~~~-~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l----------~~~~~~L~~L~L~~~~i~~~~~~~l~ 477 (594)
T 2p1m_B 410 KAPDYLTLE-PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI----------GTYAKKMEMLSVAFAGDSDLGMHHVL 477 (594)
T ss_dssp TCCCTTTCC-CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH----------HHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred CCcccccCC-chhhHHHHHHhhCCCccEEeecC-cccHHHHHHH----------HHhchhccEeeccCCCCcHHHHHHHH
Confidence 444410 00012223366789999999977 5554333322 2347889999999999976655555
Q ss_pred cCCCCCcEEEcCCCCCCCcccc-cccCCCCCCEEeCCCCcCcccCCCCC-CCCCCCCeEECCCCc
Q 046908 376 GQLQNIRALNLSNNFLSGAIPE-SFSNLKMTESLDLSHNRLSGHIPPQL-TGLNFLSNFNVSYNN 438 (551)
Q Consensus 376 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~ 438 (551)
.++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 6789999999999999654433 44568999999999999854322223 445666666665554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=210.55 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=127.7
Q ss_pred CCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccc
Q 046908 215 ALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVK 293 (551)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~ 293 (551)
+|++|++++|.+++..+..|..+++|++|++++|.++...+.. +..+++|++|++++|.+++..+..+ ++++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-----ccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 4455555555554444444555555555555555544332222 4455555555555555555444444 455555
Q ss_pred eeeccccccccCccceeccCccccccCCCceEEecCCccccc-CChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 294 HLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGH-IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 294 ~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+|++++|.++. ..+..+..+++|++|++++|.+++. +|.. |..+++|+.|++++|.+++..+
T Consensus 104 ~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-----------~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 104 KLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEY-----------FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp EEECTTSCCCC------STTCCCTTCTTCCEEECCSSCCCCCCCCGG-----------GGGCTTCCEEECCSSCCCEECG
T ss_pred EEECCCCCccc------cCchhcccCCCCCEEECcCCccceecCchh-----------hccCCCCCEEECCCCCCCcCCH
Confidence 55555555541 1122355566666666666666532 3443 3455666677777776665555
Q ss_pred ccccCCCCCc----EEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCC
Q 046908 373 REIGQLQNIR----ALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDK 446 (551)
Q Consensus 373 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 446 (551)
..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|+++|.++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 5665555555 788889988866555554 448999999999998776677888999999999999999888754
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-27 Score=227.11 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=131.2
Q ss_pred CCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCcccc-ccChhh------hcCCCCCCEEEcccCcccccccCC
Q 046908 27 LNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQG-TISINS------LANHSKLEVLLISSGSNMLQVKTE 99 (551)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~------~~~l~~L~~L~l~~n~~~~~~~~~ 99 (551)
++..++|+.|++++|.+ .+|..+... |++|++++|.+.. .++... +.++++|++|++++|.+.+..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566778888888877 456555443 7777777777742 233211 114666666666666655555443
Q ss_pred Cc-cCCCCccEEEccCCCCCCCchhhhCC-----CCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEcc
Q 046908 100 TW-HPTSQLKVLKLSDCHLHVIPSFLLQH-----YHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP 173 (551)
Q Consensus 100 ~~-~~l~~L~~L~l~~n~l~~l~~~~~~~-----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~ 173 (551)
.| ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-------------------------------- 162 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-------------------------------- 162 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC--------------------------------
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc--------------------------------
Confidence 32 55666666666666665555444443 45555555555544
Q ss_pred CCcccccCCcccccCCCCcEEECcCCccceeC--Chh-hhhCCCCCCEEECcCCcccc---cCCcccCCCCCCCEEeccc
Q 046908 174 KNIFEGDIPYSIGEMKELYMQDLSRNNFSGEL--PQP-IVSGCVALDLFDLSNNNFFG---QIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 174 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~-~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~ 247 (551)
+..+..|.++++|+.|++++|++.+.+ +.. .+..+++|++|++++|++++ .....+..+++|++|++++
T Consensus 163 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 163 -----NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp -----CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred -----cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 444444444455555555555443221 111 12334455555555554442 1112223445555555555
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|.+++..+. ..+..+++|++|++++|.++..+...+ ++|++|++++|+++ .+|. +..+++|++|++
T Consensus 238 N~l~~~~~~----~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~-------~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 238 NSLRDAAGA----PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD-------RNPS-PDELPQVGNLSL 303 (312)
T ss_dssp SCCCSSCCC----SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC-------SCCC-TTTSCEEEEEEC
T ss_pred CcCCcccch----hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC-------CChh-HhhCCCCCEEec
Confidence 555443210 013344556666666665553333222 56666666666665 3344 556666666777
Q ss_pred cCCccc
Q 046908 328 RGNSLQ 333 (551)
Q Consensus 328 ~~n~l~ 333 (551)
++|+++
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 666665
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=234.17 Aligned_cols=243 Identities=21% Similarity=0.137 Sum_probs=189.5
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 378888888888877777778888888888888888875444 5668888888888888775432 37888888
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcccc-ccCCC
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN-ELSNL 322 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-~l~~L 322 (551)
+++|.+++..+ ..+++|+.|++++|.+++..+..+ .+++|++|++++|.+++ ..|..+. .+++|
T Consensus 106 L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------EEGGGGGGGTTTC
T ss_pred CcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------cChHHHhhhCCcc
Confidence 88888876432 235788888888888888877766 78889999999888762 4556665 68899
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.|++++|.+++. |. ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+
T Consensus 172 ~~L~Ls~N~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l 236 (487)
T 3oja_A 172 EHLNLQYNFIYDV-KG------------QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (487)
T ss_dssp CEEECTTSCCCEE-EC------------CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred cEEecCCCccccc-cc------------cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccC
Confidence 9999999998854 22 1357889999999999985 44558899999999999999995 67778899
Q ss_pred CCCCEEeCCCCcCc-ccCCCCCCCCCCCCeEECC-------CCccccCCC
Q 046908 403 KMTESLDLSHNRLS-GHIPPQLTGLNFLSNFNVS-------YNNLSGPTP 444 (551)
Q Consensus 403 ~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~l~-------~N~l~~~~~ 444 (551)
++|+.|++++|.+. +.+|..+..++.|+.++++ .|+..+.++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 99999999999998 5667777888888888886 555555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=208.41 Aligned_cols=207 Identities=22% Similarity=0.175 Sum_probs=169.4
Q ss_pred hhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccc
Q 046908 210 VSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNL 289 (551)
Q Consensus 210 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 289 (551)
+..+++++.++++++.++... ..+ .++++.|++++|.+++.. +..|..+++|++|++++|.+++.... ..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFS-----LATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEE-----GGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccC-----HHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 456788999999999987543 333 268999999999988643 34488999999999999999876554 368
Q ss_pred cccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcc
Q 046908 290 SSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG 369 (551)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~ 369 (551)
++|++|++++|.++ .+|..+..+++|++|++++|++++..|.. |.++++|+.|+|++|.+++
T Consensus 77 ~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-----------~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-------SLPLLGQTLPALTVLDVSFNRLTSLPLGA-----------LRGLGELQELYLKGNELKT 138 (290)
T ss_dssp TTCCEEECCSSCCS-------SCCCCTTTCTTCCEEECCSSCCCCCCSST-----------TTTCTTCCEEECTTSCCCC
T ss_pred CcCCEEECCCCcCC-------cCchhhccCCCCCEEECCCCcCcccCHHH-----------HcCCCCCCEEECCCCCCCc
Confidence 89999999999887 67888888899999999999988444443 4777888999999999987
Q ss_pred cCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 370 EIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+..++.|+.+++++|++.|.+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 77777888899999999999998777777888999999999999998 677777777889999999999887663
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=199.22 Aligned_cols=207 Identities=24% Similarity=0.298 Sum_probs=143.6
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
..+.+++++++++ .+|..+ .++++.|++++|.+....+.+|..+++|++|++++|.++.+.+.. |..+++|
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----TSSCTTC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh-----hcCCCCC
Confidence 4566677777666 566543 245667777777666655556666666666666666665443332 4555666
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
++|++++|.+++..+.. +..+++|++|++++|.+++..+..
T Consensus 88 ~~L~l~~n~l~~~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~~~~~---------- 128 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGV-----------------------------FDQLVNLAELRLDRNQLKSLPPRV---------- 128 (270)
T ss_dssp CEEECCSSCCCCCCTTT-----------------------------TTTCSSCCEEECCSSCCCCCCTTT----------
T ss_pred CEEECCCCcCCcCCHhH-----------------------------cccccCCCEEECCCCccCeeCHHH----------
Confidence 66666655555444333 344555555555555555333322
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|
T Consensus 129 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 129 -FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp -TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 3556677777777777775556668888999999999999998777789999999999999999997777778899999
Q ss_pred CeEECCCCccccCCCC
Q 046908 430 SNFNVSYNNLSGPTPD 445 (551)
Q Consensus 430 ~~l~l~~N~l~~~~~~ 445 (551)
+.|++++|++.+.++.
T Consensus 208 ~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 208 KMLQLQENPWDCTCNG 223 (270)
T ss_dssp CEEECCSSCBCCSSSS
T ss_pred CEEEecCCCeeCCCcc
Confidence 9999999999888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=202.52 Aligned_cols=209 Identities=24% Similarity=0.239 Sum_probs=135.5
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
+++.|++++|+++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.. +..+++|
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-----FSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-----TTTCTTC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-----hcCCccc
Confidence 4555555555554 333333444555555555555555554455555555555555555555433222 5556666
Q ss_pred CEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 270 ELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
++|++++|.+.+..+..+ .+++|++|++++|.++. ..+|..+..+++|++|++++|++++..+..+..+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----- 172 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL----- 172 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-----
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce-----ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-----
Confidence 666666666655555444 56677777777776651 0256778888888888888888886555544322
Q ss_pred HhhhccccCc-eEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCccc
Q 046908 349 RFYSNLKYMA-GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418 (551)
Q Consensus 349 ~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 418 (551)
..++.+. .|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++.+.
T Consensus 173 ---~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 173 ---HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ---HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ---hhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 2223333 7999999998665555544 5899999999999987777889999999999999999853
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=202.31 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=129.0
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
+.++++++.+++++++++ .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.++.... ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CS
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------CC
Confidence 455666777777777776 666554 2566777777777766666667777777777777777664332 24
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
.+++|++|++++|.++..+.....+++|++|++++|+++ .+| ..|..+++|++|++++|++++. |...
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-------~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~--- 143 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------SLPLGALRGLGELQELYLKGNELKTL-PPGL--- 143 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-------CCCSSTTTTCTTCCEEECTTSCCCCC-CTTT---
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-------ccCHHHHcCCCCCCEEECCCCCCCcc-Chhh---
Confidence 566777777777777654433236677777777777665 333 4466677777777777776633 3221
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
|..+++|+.|+|++|++++..+..|.++++|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 144 -------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 144 -------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 455666777777777776555555666777777777777776 44555555667777777777664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=198.48 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=160.9
Q ss_pred CCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcc-cc
Q 046908 240 LHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQ-IN 317 (551)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~ 317 (551)
.++++++++.++.++.. + .++++.|++++|.+++..+..+ .+++|++|++++|.++ .+|.. +.
T Consensus 18 ~~~l~~~~~~l~~ip~~------~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN------I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------TLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSC------C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------CCCTTTTS
T ss_pred CCEEEccCCCCCccCCC------C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------eeChhhhc
Confidence 45566666665543221 1 1456677777777766666555 6777777777777766 44443 56
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
.+++|++|++++|++++ +|... |..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 83 ~l~~L~~L~l~~n~l~~-~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQA-LPIGV----------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SCTTCCEEECCSSCCCC-CCTTT----------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCEEECCCCcCCc-CCHhH----------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 78899999999998884 33322 57889999999999999988888899999999999999999987777
Q ss_pred cccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
.|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+. ...+..+..+++.+|||.|+|.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 899999999999999999987777899999999999999999987765 5567888999999999999986
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-24 Score=212.96 Aligned_cols=261 Identities=19% Similarity=0.215 Sum_probs=141.2
Q ss_pred EccCCcccccCCcccccCCCCcEEECcCCccceeCCh----hhhhCCC-CCCEEECcCCcccccCCcccCCC-----CCC
Q 046908 171 DMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ----PIVSGCV-ALDLFDLSNNNFFGQIFPKYMNL-----THL 240 (551)
Q Consensus 171 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 240 (551)
.++.|.+.+..|..+...++|+.|++++|++. ..+. ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34444444444443333344555555555554 3332 3333444 55555555555554444434332 556
Q ss_pred CEEecccccccCcCCCchhhHhhccC-CCCCEEECCCCcccccCCCcc-----c-ccccceeeccccccccCccceeccC
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQL-KSLELIDIFENSLSGSLVSSF-----N-LSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-----~-~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
++|++++|.+++.... .+...+..+ ++|++|++++|.+++.....+ . .++|++|++++|.+++.. ...++
T Consensus 83 ~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~ 159 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--SDELI 159 (362)
T ss_dssp CEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--HHHHH
T ss_pred cEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--HHHHH
Confidence 6666666655542221 222234444 566666666666655544333 1 246666666666665211 11223
Q ss_pred ccccccC-CCceEEecCCcccccCChhhhhhhchhhHhhhcc-ccCceEecCCCcCccc----CCccccC-CCCCcEEEc
Q 046908 314 YQINELS-NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL-KYMAGLDLSSNELSGE----IPREIGQ-LQNIRALNL 386 (551)
Q Consensus 314 ~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L 386 (551)
..+..++ +|++|++++|++++..+..++. .+..+ ++|+.|+|++|.+++. ++..+.. .++|++|+|
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAK-------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHH-------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHH-------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 3344444 7777777777776555444322 13444 3777777777777642 3334444 347778888
Q ss_pred CCCCCCCccc----ccccCCCCCCEEeCCCCcCccc-------CCCCCCCCCCCCeEECCCCccccC
Q 046908 387 SNNFLSGAIP----ESFSNLKMTESLDLSHNRLSGH-------IPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 387 ~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-------~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
++|.+++..+ ..+..+++|+.|++++|.+... ++..+..++.|+.+|+++|++...
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8777775433 3346677788888888774322 334566777788888888877544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-23 Score=195.23 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=104.7
Q ss_pred CCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCc
Q 046908 104 TSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPY 183 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~ 183 (551)
+++|+.|++++|.+..++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+.
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-------------~~~--~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-------------DIS--ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-------------CCG--GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-------------Cch--hhcCCCCCCEEECCCCccCccChh
Confidence 344555555555554443 2444555555555555544 111 111244555555555555544444
Q ss_pred ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.|..+++|++|++++|++. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+.. +
T Consensus 104 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~ 177 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-----F 177 (272)
T ss_dssp TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----T
T ss_pred HhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-----h
Confidence 4555555555555555555 444444445555555555555555555555555555555555555555433322 4
Q ss_pred ccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhh
Q 046908 264 SQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 340 (551)
..+++|++|++++|.+++..+..+ .+++|++|++++|.+. +.+++|+.+++..|.++|.+|..+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 555555555555555555555444 4555555555555443 123455555555555555555544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=192.00 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=158.5
Q ss_pred cCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccC
Q 046908 77 ANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKL 156 (551)
Q Consensus 77 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l 156 (551)
..+++|+.|+++++... .+ ..+..+++|++|++++|.+..++ .+..+++|++|++++|.++ .+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~-------------~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ-------------SL 100 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC-------------CC
T ss_pred ccccceeeeeeCCCCcc-cc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC-------------cc
Confidence 34455666666555422 11 13566777778888888776654 5777788888888888777 45
Q ss_pred ChhHhhhcCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCC
Q 046908 157 PRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236 (551)
Q Consensus 157 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 236 (551)
+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|++. .++...+..+++|+.|++++|++++..+..|..
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 5555555788888888888888777777888888999999998887 677777777889999999999888877777888
Q ss_pred CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccc
Q 046908 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI 316 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 316 (551)
+++|++|++++|.+++..+.. +..+++|++|++++|.+.+. +++|+.+++..|.++ |.+|.++
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~------g~ip~~~ 242 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGV-----FDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHS------GVVRNSA 242 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTT-----TTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTG------GGBBCTT
T ss_pred CccCCEEECCCCcCCccCHHH-----HhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCC------CcccCcc
Confidence 899999999999888755543 78889999999999977653 667888888888776 3778777
Q ss_pred cccCC
Q 046908 317 NELSN 321 (551)
Q Consensus 317 ~~l~~ 321 (551)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 65544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=196.79 Aligned_cols=237 Identities=18% Similarity=0.155 Sum_probs=177.4
Q ss_pred CCCcEEECcCCccceeCChhh--hhCCCCCCEEECcCCcccccCCccc--CCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 189 KELYMQDLSRNNFSGELPQPI--VSGCVALDLFDLSNNNFFGQIFPKY--MNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
..++.+.+.++.+....-..+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+.. ....+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-AELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-HHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-HHHHhh
Confidence 346667776665542111111 1124679999999999988888887 88999999999999988643311 113456
Q ss_pred cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 343 (551)
.+++|++|++++|.+.+..+..+ .+++|++|++++|++.....+ ..+..+..+++|++|++++|+++ .++..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~---- 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQNLALRNTGME-TPTGV---- 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCSCBCCSSCCC-CHHHH----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCEEECCCCCCC-chHHH----
Confidence 89999999999999998888777 899999999999986521000 11233467899999999999986 22221
Q ss_pred hchhhHhhhccccCceEecCCCcCcccCCccccCC---CCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCC
Q 046908 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQL---QNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP 420 (551)
Q Consensus 344 ~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 420 (551)
....+..+++|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |
T Consensus 216 ---~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 216 ---CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp ---HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred ---HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 11125778999999999999998878777776 69999999999999 5566553 8999999999999954 4
Q ss_pred CCCCCCCCCCeEECCCCcccc
Q 046908 421 PQLTGLNFLSNFNVSYNNLSG 441 (551)
Q Consensus 421 ~~~~~l~~L~~l~l~~N~l~~ 441 (551)
. +..++.|+.|++++|+++.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788999999999999863
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=188.52 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=132.0
Q ss_pred CCCCEEECcCCcccccCCcccCCCCCCCEEeccccc-ccCcCCCchhhHhhccCCCCCEEECCC-CcccccCCCcc-ccc
Q 046908 214 VALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNH-FSGKMDDANILVQLSQLKSLELIDIFE-NSLSGSLVSSF-NLS 290 (551)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~~ 290 (551)
.+|++|++++|++++..+..|.++++|++|++++|. ++.+.+.. |..+++|++|++++ |.+++..+..| +++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 356666666666666666666666777777777765 65544333 66677777777776 67766666666 677
Q ss_pred ccceeeccccccccCccceeccCccccccCCCc---eEEecCC-cccccCChhhhhhhchhhHhhhccccCc-eEecCCC
Q 046908 291 SVKHLYLQKNAITGDNKFFGRIPYQINELSNLH---VLLLRGN-SLQGHIPNELCHVSRFLHRFYSNLKYMA-GLDLSSN 365 (551)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~l~~~~~~~l~~L~-~L~Ls~n 365 (551)
+|++|++++|.++ .+|. +..+++|+ +|++++| .+++..+.. |.++++|+ .|++++|
T Consensus 106 ~L~~L~l~~n~l~-------~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-----------~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 106 LLKFLGIFNTGLK-------MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-----------FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TCCEEEEEEECCC-------SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-----------TTTTBSSEEEEECCSC
T ss_pred CCCEEeCCCCCCc-------cccc-cccccccccccEEECCCCcchhhcCccc-----------ccchhcceeEEEcCCC
Confidence 7777777777766 4554 56666666 7888887 666333222 46677777 8888888
Q ss_pred cCcccCCccccCCCCCcEEEcCCCC-CCCcccccccCC-CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 366 ELSGEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNL-KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
.++...+..|.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|.. .++.|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 777433344444 778888888884 876666778888 888888888888874 3433 4567788887766
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=189.93 Aligned_cols=208 Identities=16% Similarity=0.177 Sum_probs=124.2
Q ss_pred CcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCc-cccccChhhhcCCCCCCEEEccc-Ccccccc
Q 046908 19 FEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN-FQGTISINSLANHSKLEVLLISS-GSNMLQV 96 (551)
Q Consensus 19 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~ 96 (551)
++ .+|. +. ++|++|++++|.++++.+.+|.++++|++|++++|. +. .++...|.++++|++|++++ |. ...+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 44 4454 33 478888888888887666678888888888888886 44 45555667777777777776 44 3445
Q ss_pred cCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCC-
Q 046908 97 KTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKN- 175 (551)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n- 175 (551)
+...|..+++|++|++++|.++.+|. +..+++|+ .|+.|++++|
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~----------------------------------~L~~L~l~~N~ 141 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD----------------------------------IFFILEITDNP 141 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCC----------------------------------SEEEEEEESCT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccc----------------------------------cccEEECCCCc
Confidence 55566667777777777777666664 44444444 1114444444
Q ss_pred cccccCCcccccCCCCc-EEECcCCccceeCChhhhhCCCCCCEEECcCCc-ccccCCcccCCC-CCCCEEecccccccC
Q 046908 176 IFEGDIPYSIGEMKELY-MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN-FFGQIFPKYMNL-THLHWLYLDNNHFSG 252 (551)
Q Consensus 176 ~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 252 (551)
.+.+..+..|.++++|+ .|++++|++. .+|...|.. ++|+.|++++|+ ++...+..|..+ ++|+.|++++|.++.
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 44444444455555555 5566555555 555555443 556666666663 555555555566 666666666666654
Q ss_pred cCCCchhhHhhccCCCCCEEECCCC
Q 046908 253 KMDDANILVQLSQLKSLELIDIFEN 277 (551)
Q Consensus 253 ~~~~~~~~~~~~~l~~L~~L~l~~n 277 (551)
.+.. .+++|+.|+++++
T Consensus 220 l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 LPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp CCCT--------TCTTCSEEECTTC
T ss_pred CChh--------HhccCceeeccCc
Confidence 3221 3455666665554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=207.04 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=88.8
Q ss_pred EEccCCCCCC-CchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCCh----hHhhhcC-CccEEEccCCcccccCCc
Q 046908 110 LKLSDCHLHV-IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPR----NMGIVLQ-KLIYLDMPKNIFEGDIPY 183 (551)
Q Consensus 110 L~l~~n~l~~-l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~----~~~~~l~-~L~~L~L~~n~~~~~~~~ 183 (551)
..++.|.++. +|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|.+.+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-------------SISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-------------GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-------------hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 3455566643 3333334444666666666665 3332 2233344 566666666666555444
Q ss_pred ccccC-----CCCcEEECcCCccceeCChhh---hhCC-CCCCEEECcCCcccccCCccc----CC-CCCCCEEeccccc
Q 046908 184 SIGEM-----KELYMQDLSRNNFSGELPQPI---VSGC-VALDLFDLSNNNFFGQIFPKY----MN-LTHLHWLYLDNNH 249 (551)
Q Consensus 184 ~~~~l-----~~L~~L~L~~n~l~~~~~~~~---~~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~ 249 (551)
.+..+ ++|++|++++|++++..+..+ +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44443 666666666666653322221 2222 566666666666654443322 22 2456666666665
Q ss_pred ccCcCCCchhhHhhccCC-CCCEEECCCCcccccCCCcc-----cc-cccceeeccccccc
Q 046908 250 FSGKMDDANILVQLSQLK-SLELIDIFENSLSGSLVSSF-----NL-SSVKHLYLQKNAIT 303 (551)
Q Consensus 250 l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~L~~n~l~ 303 (551)
++..... .++..+..++ +|++|++++|.+++..+..+ .. ++|++|+|++|.++
T Consensus 150 l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 150 LGIKSSD-ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GGGSCHH-HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCHHHHH-HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 5532111 2333444444 56666666665555443222 12 35555555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=184.23 Aligned_cols=191 Identities=21% Similarity=0.235 Sum_probs=130.1
Q ss_pred CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
++++.|++++|.+++..+..+ .+++|++|++++|.++. ..+..+..+++|++|++++|++++..+..
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------ 102 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLANNQLASLPLGV------ 102 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTT------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCCCcccccChhH------
Confidence 345555555555555555444 55666666666665542 23344666777777777777776333332
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTG 425 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 425 (551)
|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..
T Consensus 103 -----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 103 -----FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 466778888888888888666667888999999999999999877778999999999999999999887888999
Q ss_pred CCCCCeEECCCCccccCCCCCccCCc-c-----CCcccCCCCCCCCccccCCCCCC
Q 046908 426 LNFLSNFNVSYNNLSGPTPDKEQFAT-F-----DESSYTGNHELCGSLIRKKCSSA 475 (551)
Q Consensus 426 l~~L~~l~l~~N~l~~~~~~~~~~~~-~-----~~~~~~~n~~~c~~~~~~~c~~~ 475 (551)
+++|++|++++|++.+.......+.. + ...+..++. .|+.+....|..+
T Consensus 178 l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp CTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 99999999999999887443211111 1 111223333 4556666777765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-23 Score=211.29 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=45.0
Q ss_pred hccccCceEecCCCcCc----ccCCccccCCCCCcEEEcCCCCCCCc----cccccc--CCCCCCEEeCCCCcCcc----
Q 046908 352 SNLKYMAGLDLSSNELS----GEIPREIGQLQNIRALNLSNNFLSGA----IPESFS--NLKMTESLDLSHNRLSG---- 417 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~---- 417 (551)
..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+. .+++|+.|++++|.++.
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 34445555555555553 23444455555555555555555433 233332 25555555555555554
Q ss_pred cCCCCC-CCCCCCCeEECCCCccccCC
Q 046908 418 HIPPQL-TGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 418 ~~p~~~-~~l~~L~~l~l~~N~l~~~~ 443 (551)
.+|..+ ..+++|++|++++|++++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 244433 33455555555555555433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-23 Score=200.36 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=124.1
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
+.++.+++++|.+.+..+. +..+++|+.|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4556666666655544433 334566666666666554321122334455566666665555544444555555555555
Q ss_pred cccc-cccCcCCCchhhHhhccCCCCCEEECCCC-cccccCCCcccccccceeeccccccccCccceeccCccccccC-C
Q 046908 245 LDNN-HFSGKMDDANILVQLSQLKSLELIDIFEN-SLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-N 321 (551)
Q Consensus 245 L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~ 321 (551)
+++| .+++. .++..+..+++|++|++++| .+++. .++..+..++ +
T Consensus 149 L~~~~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~----------------------------~~~~~~~~l~~~ 196 (336)
T 2ast_B 149 LSGCSGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEK----------------------------HVQVAVAHVSET 196 (336)
T ss_dssp CTTCBSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHH----------------------------HHHHHHHHSCTT
T ss_pred CCCCCCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChH----------------------------HHHHHHHhcccC
Confidence 5555 33321 13333445555555555555 44332 1233344555 6
Q ss_pred CceEEecCCc--cc-ccCChhhhhhhchhhHhhhccccCceEecCCCc-CcccCCccccCCCCCcEEEcCCCC-CCCccc
Q 046908 322 LHVLLLRGNS--LQ-GHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNE-LSGEIPREIGQLQNIRALNLSNNF-LSGAIP 396 (551)
Q Consensus 322 L~~L~l~~n~--l~-~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 396 (551)
|++|++++|. ++ +.+|. .+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus 197 L~~L~l~~~~~~~~~~~l~~-----------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLST-----------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHH-----------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred CCEEEeCCCcccCCHHHHHH-----------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 6666666663 22 11111 13456666777777666 555556666777777777777774 222222
Q ss_pred ccccCCCCCCEEeCCCCcCcccCCCCCCCC-CCCCeEECCCCccccCCCC
Q 046908 397 ESFSNLKMTESLDLSHNRLSGHIPPQLTGL-NFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 397 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~~ 445 (551)
..+.++++|+.|++++| +. ...+..+ ..+..|++++|++++..|.
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCC
Confidence 24666777777777777 22 1233333 2366667777777776664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-23 Score=202.77 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=169.2
Q ss_pred CCcEEECcCCccceeCChhhhhCC--CCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGC--VALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
.++.++++++.+. ...+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. .++..+..++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----HHHHHHTTBC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----HHHHHHhhCC
Confidence 4677788777664 2233334 6788888888888766554 45688888888888877541 2666788888
Q ss_pred CCCEEECCCCcccccCCCcc-cccccceeecccc-ccccCccceeccCccccccCCCceEEecCC-ccccc-CChhhhhh
Q 046908 268 SLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN-AITGDNKFFGRIPYQINELSNLHVLLLRGN-SLQGH-IPNELCHV 343 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~ 343 (551)
+|++|++++|.+++..+..+ .+++|++|++++| .+++ ..++..+..+++|++|++++| .+++. ++.
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----- 188 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWCFDFTEKHVQV----- 188 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-----
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-----
Confidence 88888888888876655555 6888899999888 5542 024566788999999999999 88743 222
Q ss_pred hchhhHhhhccc-cCceEecCCC--cCc-ccCCccccCCCCCcEEEcCCCC-CCCcccccccCCCCCCEEeCCCCc-Ccc
Q 046908 344 SRFLHRFYSNLK-YMAGLDLSSN--ELS-GEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNLKMTESLDLSHNR-LSG 417 (551)
Q Consensus 344 ~~l~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 417 (551)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +..
T Consensus 189 ------~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 189 ------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp ------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred ------HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 246788 9999999999 555 3567778889999999999999 777777889999999999999996 322
Q ss_pred cCCCCCCCCCCCCeEECCCC
Q 046908 418 HIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 418 ~~p~~~~~l~~L~~l~l~~N 437 (551)
.....+..+++|++|++++|
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCCCCCEEeccCc
Confidence 22225778999999999999
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=195.28 Aligned_cols=226 Identities=18% Similarity=0.152 Sum_probs=173.0
Q ss_pred CCCCEEECcCCCCcccC-Cc--cCCCCCCCCEEEcccCcCccccchhc--cCCCCCCEeeCCCCccccccC---hhhhcC
Q 046908 7 KNLFELDLSSNNFEGHI-PQ--CLNNLTHLKVLDISNNQLSGKVPSTL--TNLTSLEYLDRFSINFQGTIS---INSLAN 78 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~-~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~---~~~~~~ 78 (551)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788888888775311 11 12345779999999999998899888 899999999999999886544 234567
Q ss_pred CCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCC---Cch--hhhCCCCCCEEEccCCcccccCCCCCCCccc
Q 046908 79 HSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV---IPS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFA 153 (551)
Q Consensus 79 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 153 (551)
+++|++|++++|.+ ..+++..|..+++|++|++++|++.. ++. .+..+++|++|++++|.++
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------ 210 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------------ 210 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC------------
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC------------
Confidence 99999999999886 45556678999999999999999743 332 3467889999999999886
Q ss_pred ccCCh---hHhhhcCCccEEEccCCcccccCCcccccC---CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc
Q 046908 154 GKLPR---NMGIVLQKLIYLDMPKNIFEGDIPYSIGEM---KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF 227 (551)
Q Consensus 154 ~~l~~---~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 227 (551)
.++. .++..+++|++|++++|.+.+..|..+..+ ++|+.|++++|+++ .+|..++ ++|+.|++++|+++
T Consensus 211 -~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 211 -TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLN 285 (310)
T ss_dssp -CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCC
T ss_pred -chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCC
Confidence 3443 344567899999999999988777777666 58888888888887 7777652 67888888888887
Q ss_pred ccCCcccCCCCCCCEEecccccccC
Q 046908 228 GQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 228 ~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
+. | .+..+++|+.|++++|+++.
T Consensus 286 ~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred CC-c-hhhhCCCccEEECcCCCCCC
Confidence 54 2 25667778888888777754
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=192.71 Aligned_cols=223 Identities=19% Similarity=0.173 Sum_probs=149.2
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCE-EECcCCcccccCCcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDL-FDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+++++|+|++|+++.+.+.+|.++++|++|+|++|++.+.+|..+|.++++++. +.+++|++....+.+|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456777777777776666677778888888888888765677777777777665 5556677877777788888888888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCC-CcccccCCCcc-cc-cccceeeccccccccCccceeccCccccccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFE-NSLSGSLVSSF-NL-SSVKHLYLQKNAITGDNKFFGRIPYQINELS 320 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~ 320 (551)
++++|.+....+.. +....++..+++.+ +.+.......| .+ ..++.|++++|.|+ .+|.......
T Consensus 110 ~l~~n~l~~~~~~~-----~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------~i~~~~f~~~ 177 (350)
T 4ay9_X 110 LISNTGIKHLPDVH-----KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------EIHNSAFNGT 177 (350)
T ss_dssp EEEEECCSSCCCCT-----TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-------EECTTSSTTE
T ss_pred cccccccccCCchh-----hcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-------CCChhhcccc
Confidence 88888887655443 55556677777754 46666666655 33 45777888888776 5666655566
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
+|+.+++.+|+..+.+|... |.++++|+.|++++|+++...+.. +.+|+.|.+.++.-...+| .+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~----------f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDV----------FHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTT----------TTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred chhHHhhccCCcccCCCHHH----------hccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 77788877543333555543 567777788888888777433333 3455555554443222444 366
Q ss_pred CCCCCCEEeCCCC
Q 046908 401 NLKMTESLDLSHN 413 (551)
Q Consensus 401 ~l~~L~~L~l~~n 413 (551)
.+++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 7777888887764
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-23 Score=208.97 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=192.6
Q ss_pred cCChhHhhhcCCccEEEccCCcccccCC----cccccCCCCcEEECcCC---ccceeCChhh------hhCCCCCCEEEC
Q 046908 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIP----YSIGEMKELYMQDLSRN---NFSGELPQPI------VSGCVALDLFDL 221 (551)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n---~l~~~~~~~~------~~~l~~L~~L~L 221 (551)
.++..+.. +++|+.|++++|.+....+ ..+..+++|+.|++++| ++.+.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45555554 7899999999999987643 34778999999999996 4445566554 367899999999
Q ss_pred cCCcccc----cCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC---------CCCCEEECCCCccccc-CC---
Q 046908 222 SNNNFFG----QIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL---------KSLELIDIFENSLSGS-LV--- 284 (551)
Q Consensus 222 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l---------~~L~~L~l~~n~l~~~-~~--- 284 (551)
++|.+.. ..+..+..+++|++|++++|.++..... .++..+..+ ++|++|++++|.++.. .+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999987 4566788899999999999998642211 234445555 9999999999999733 22
Q ss_pred Ccc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccc----cCChhhhhhhchhhHhhhccccCce
Q 046908 285 SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQG----HIPNELCHVSRFLHRFYSNLKYMAG 359 (551)
Q Consensus 285 ~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~~~~l~~~~~~~l~~L~~ 359 (551)
..+ .+++|++|++++|.++.. +....++..+..+++|+.|++++|.++. .+|. .+..+++|+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----------~l~~~~~L~~ 248 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-----------ALKSWPNLRE 248 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-----------HGGGCTTCCE
T ss_pred HHHHhCCCcCEEECcCCCCCHh-HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-----------HHccCCCcCE
Confidence 233 688999999999988621 0111233478889999999999999862 3333 2577889999
Q ss_pred EecCCCcCccc----CCcccc--CCCCCcEEEcCCCCCCC----cccccc-cCCCCCCEEeCCCCcCcccC
Q 046908 360 LDLSSNELSGE----IPREIG--QLQNIRALNLSNNFLSG----AIPESF-SNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 360 L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 419 (551)
|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999865 466664 48999999999999997 366666 66899999999999998654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-22 Score=195.29 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=144.8
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.++..+|.+++++.++....
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67889999998 566655 368999999999999766778999999999999999988888888899999888765544
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCC-cccccCCCCCCCcccccCChhHhhhc-CC
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNN-KVVGNFPICSNNNFAGKLPRNMGIVL-QK 166 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~l~~~~~~~l-~~ 166 (551)
++.+..++++.|..+++|++|++++|++..+|. .+....++..+++.++ .+. .++...+..+ ..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-------------~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------TIERNSFVGLSFE 155 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-------------EECTTSSTTSBSS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-------------cccccchhhcchh
Confidence 444666777788889999999999999877764 4445556777777653 444 3443333323 24
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcC-CccceeCChhhhhCCCCCCEEECcCCcccccCCcccC
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSR-NNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYM 235 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 235 (551)
++.|++++|.++.+.+..| ...+|+.+++++ |.+. .+|.++|.++++|++|++++|+++...+..|.
T Consensus 156 l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred hhhhccccccccCCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 6666677666665444433 344566666654 3343 66666666666666666666666654444433
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=187.69 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=103.2
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 44555555555555552 22 35555555555555555443221 4444445555544444222 11 345566666
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccC
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 188 (551)
+|++++|.++.++. +..+++|++|++++|.++ .++. +..+++|+.|++++|.+.+..+ +..+
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l 172 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-------------NISP--LAGLTNLQYLSIGNAQVSDLTP--LANL 172 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccC-------------cCcc--ccCCCCccEEEccCCcCCCChh--hcCC
Confidence 66666666655553 566666666666666665 2222 2235556666666665554322 5566
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccC
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSG 252 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 252 (551)
++|+.|++++|++. .++. +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 173 ~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 66666666666665 3333 344566666666666665443 25556666666666665543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=188.22 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=112.5
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
..++++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-------AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-------hhc
Confidence 345666777777777665 4542 3456677777777776665443 666777777777777665421 256
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.+++|++|++++|.+++..+ ...+++|++|++++|.++ .++. +..+++|+.|++++|.+++ ++.
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------~~~~-l~~l~~L~~L~l~~n~l~~-~~~------ 168 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-------NISP-LAGLTNLQYLSIGNAQVSD-LTP------ 168 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-------CCGG-GGGCTTCCEEECCSSCCCC-CGG------
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC-------cCcc-ccCCCCccEEEccCCcCCC-Chh------
Confidence 66667777777666665432 115566666666666554 2222 5556666666666666552 111
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 2445556666666666553222 5556666666666666654432 555666666666666665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=176.29 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=79.6
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
.++.|++++|.+.+..+..|.++++|+.|++++|++. .++...+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 3444444444444444444445555555555555554 333333444555555555555555444444555555555555
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCce
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~ 324 (551)
++|.+++..+.. |..+++|++|++++|.+++..+..+ .+++|++|++++|.++. ..+..+..+++|+.
T Consensus 115 ~~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 115 GGNQLKSLPSGV-----FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS------VPHGAFDRLGKLQT 183 (251)
T ss_dssp CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCE
T ss_pred CCCcCCCcChhH-----hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc------cCHHHHhCCCCCCE
Confidence 555555433322 4455555555555555555554444 45555555555555541 22234555666666
Q ss_pred EEecCCcccc
Q 046908 325 LLLRGNSLQG 334 (551)
Q Consensus 325 L~l~~n~l~~ 334 (551)
|++++|++..
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 6666666653
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=169.37 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=126.6
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
+.++.+++.++.++... .+++++|++++|.|+ .++ ..+..+++|++|++++|++++..|..
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~-------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNNQISELAPDA--------- 75 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCC-------EECTTSSTTCTTCCEEECCSSCCCEECTTT---------
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCC-------CcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------
Confidence 57888888888776543 368899999999887 444 46788889999999999888665655
Q ss_pred HhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 349 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++
T Consensus 76 --~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 76 --FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp --TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 467788899999999988666666788899999999999998888888888999999999999998777778888888
Q ss_pred CCeEECCCCccccCCC
Q 046908 429 LSNFNVSYNNLSGPTP 444 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~ 444 (551)
|++|++++|++.+.+.
T Consensus 154 L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCEEECCSSCEECSGG
T ss_pred CCEEEeCCCCcCCCCc
Confidence 9999999998887664
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=164.56 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=81.1
Q ss_pred cEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 108 KVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 108 ~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
+.++.+++.+..+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+.+..+..|..
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK-------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC-------------cCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 34555555555555332 234555555555554 333333333455555555555555444444455
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+++|++|++++|++. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+.. +..++
T Consensus 75 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~l~ 148 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV-----FDRLT 148 (208)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----TTTCT
T ss_pred CCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH-----hccCC
Confidence 555555555555554 444444444555555555555555444444455555555555555554433222 44445
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccc
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAIT 303 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 303 (551)
+|++|++++|.+.+ .+++|++|++..|.++
T Consensus 149 ~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp TCCEEECCSCCBCC------CTTTTHHHHHHHHHCT
T ss_pred CccEEEecCCCeec------CCCCHHHHHHHHHhCC
Confidence 55555555554332 2334444444444433
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=167.97 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=127.1
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceecc-C-ccccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRI-P-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+.+++++|.++.++... .+.+++|++++|.++ .+ + ..+..+++|++|++++|.+++..+..
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------- 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFT-------VLEATGIFKKLPQLRKINFSNNKITDIEEGA-------- 76 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC-------EECCCCCGGGCTTCCEEECCSSCCCEECTTT--------
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCC-------ccCchhhhccCCCCCEEECCCCcCCEECHHH--------
Confidence 36677777766654432 345677778877776 33 2 34677888888888888888554433
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLN 427 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 427 (551)
|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|+.|++++|++++..|..|..++
T Consensus 77 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 77 ---FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp ---TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred ---hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 47788899999999999877788899999999999999999988899999999999999999999988899999999
Q ss_pred CCCeEECCCCccccCCCC
Q 046908 428 FLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 428 ~L~~l~l~~N~l~~~~~~ 445 (551)
+|++|++++|++.|.++-
T Consensus 154 ~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TCCEEECCSCCEECSGGG
T ss_pred CCCEEEecCcCCcCCCch
Confidence 999999999999988764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=165.67 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=95.9
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEe
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 244 (551)
+++++|++++|.+.+..+..|..+++|++|++++|++. .++...+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46777777777776665556666777777777777776 56665556666777777777766665555566666666666
Q ss_pred cccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCc
Q 046908 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLH 323 (551)
Q Consensus 245 L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~ 323 (551)
+++|.+++..+.. +..+++|++|++++|.+++..+..+ .+++|++|++++|.+. +.+++|+
T Consensus 107 L~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~ 168 (208)
T 2o6s_A 107 LNTNQLQSLPDGV-----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIR 168 (208)
T ss_dssp CCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTH
T ss_pred cCCCcCcccCHhH-----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHH
Confidence 6666666543332 5566666666666666665555444 4555666666555433 1234555
Q ss_pred eEEecCCcccccCChhh
Q 046908 324 VLLLRGNSLQGHIPNEL 340 (551)
Q Consensus 324 ~L~l~~n~l~~~~p~~~ 340 (551)
+|+++.|+++|.+|..+
T Consensus 169 ~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 169 YLSEWINKHSGVVRNSA 185 (208)
T ss_dssp HHHHHHHHCTTTBBCTT
T ss_pred HHHHHHHhCCceeeccC
Confidence 55555555555555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=164.69 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=140.7
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+. +.+++|++++|.+++..|... |..+++|+.|+|++|.+++..+
T Consensus 14 ~~l~~s~n~l~-------~iP~~~~--~~~~~L~L~~N~l~~~~~~~~----------~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 14 TTVDCSNQKLN-------KIPEHIP--QYTAELRLNNNEFTVLEATGI----------FKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TEEECCSSCCS-------SCCSCCC--TTCSEEECCSSCCCEECCCCC----------GGGCTTCCEEECCSSCCCEECT
T ss_pred CEeEeCCCCcc-------cCccCCC--CCCCEEEcCCCcCCccCchhh----------hccCCCCCEEECCCCcCCEECH
Confidence 58999999987 6777654 467899999999996655432 5788999999999999998888
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|. ...+..
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence 8999999999999999999988888899999999999999999999899999999999999999999998775 566788
Q ss_pred cCCcccCCCCCCCCcccc
Q 046908 452 FDESSYTGNHELCGSLIR 469 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~~ 469 (551)
+..+++.+|++.|+|+..
T Consensus 155 L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 155 LSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CCEEECCSCCEECSGGGH
T ss_pred CCEEEecCcCCcCCCchH
Confidence 999999999999999753
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=165.34 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=113.2
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+.. |..+++|+.|+|++|.+++..|
T Consensus 14 ~~v~c~~~~l~-------~iP~~l~--~~l~~L~l~~n~i~~i~~~~-----------~~~l~~L~~L~Ls~N~i~~~~~ 73 (220)
T 2v9t_B 14 NIVDCRGKGLT-------EIPTNLP--ETITEIRLEQNTIKVIPPGA-----------FSPYKKLRRIDLSNNQISELAP 73 (220)
T ss_dssp TEEECTTSCCS-------SCCSSCC--TTCCEEECCSSCCCEECTTS-----------STTCTTCCEEECCSSCCCEECT
T ss_pred CEEEcCCCCcC-------cCCCccC--cCCCEEECCCCcCCCcCHhH-----------hhCCCCCCEEECCCCcCCCcCH
Confidence 45667777666 5665543 57778888888777433333 4666777888888888777677
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFAT 451 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~ 451 (551)
..|.++++|++|+|++|+++...+..|.++++|+.|++++|++++..|..|..+++|++|++++|++++..+. ...+..
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 7777788888888888888766666677778888888888888777777777778888888888887776664 445666
Q ss_pred cCCcccCCCCCCCCccc
Q 046908 452 FDESSYTGNHELCGSLI 468 (551)
Q Consensus 452 ~~~~~~~~n~~~c~~~~ 468 (551)
+..+++.+||+.|+|.+
T Consensus 154 L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 154 IQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCEEECCSSCEECSGGG
T ss_pred CCEEEeCCCCcCCCCcc
Confidence 77777788888887764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=183.72 Aligned_cols=188 Identities=26% Similarity=0.333 Sum_probs=121.1
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
+|+.|++++|+++.+|..+. ++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-------------~ip----~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-------------SLP----ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-------------CCC----CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-------------ccc----cccCCCCEEEccCCCCCC-cch-h
Confidence 56666666666666665442 56667777766665 344 124567777777776665 444 4
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.+ +|+.|++++|+++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++++. +.
T Consensus 119 ~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-------l~- 179 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-------LP- 179 (571)
T ss_dssp CT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-------CC-
T ss_pred hc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-------hh-
Confidence 43 6777777777776 3665 36677777777777765 333 45677777777777765322 22
Q ss_pred CCCCCEEECCCCcccccCCCccccccc-------ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCCh
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSV-------KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 338 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 338 (551)
++|+.|++++|.++..+. +. .+| ++|+|++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 180 -~~L~~L~Ls~N~L~~lp~--~~-~~L~~~~~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA--VP-VRNHHSEETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -CCCCEEECcCCCCCchhh--HH-HhhhcccccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 677777777777775444 31 155 88888888777 6777777788888888888888877777
Q ss_pred hhhhhh
Q 046908 339 ELCHVS 344 (551)
Q Consensus 339 ~~~~~~ 344 (551)
.+..+.
T Consensus 249 ~l~~l~ 254 (571)
T 3cvr_A 249 SLSQQT 254 (571)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 665443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=177.87 Aligned_cols=179 Identities=22% Similarity=0.166 Sum_probs=123.4
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc--cccccceeeccccccccCccceeccCccccc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINE 318 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 318 (551)
+.++.+++.++.++.. + .+.++.|++++|.+++..+..+ .+++|++|+|++|.|+. ..+..|..
T Consensus 21 ~~l~c~~~~l~~iP~~------~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~------i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS------L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------ISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCSSCCSS------C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE------ECTTTTTT
T ss_pred CEEEeCCCCcCccCcc------C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc------cChhhccC
Confidence 5788888877754331 1 2457888888888888777666 67888888888887761 22345777
Q ss_pred cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccc
Q 046908 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPES 398 (551)
Q Consensus 319 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 398 (551)
+++|++|++++|+++...+.. |.++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~-----------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFL-----------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT-----------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCCEEECCCCcCCcCCHHH-----------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 788888888888877433322 466777788888888877666777777788888888888887655555
Q ss_pred c---cCCCCCCEEeCCCCcCcccCCCCCCCCCC--CCeEECCCCccccCCC
Q 046908 399 F---SNLKMTESLDLSHNRLSGHIPPQLTGLNF--LSNFNVSYNNLSGPTP 444 (551)
Q Consensus 399 ~---~~l~~L~~L~l~~n~l~~~~p~~~~~l~~--L~~l~l~~N~l~~~~~ 444 (551)
| ..+++|+.|+|++|+++...+..+..++. ++.|++++|++.|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5 45777888888888777544455555555 3677777777776553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=180.56 Aligned_cols=178 Identities=26% Similarity=0.376 Sum_probs=97.5
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
+|+.|+|++|++++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+.+ ++. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--------- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT---------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc---------
Confidence 66777777776664 44433 266777777777666 444 345666666666666654 332 222
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
+|++|++++|.++.+|. .+++|++|++++|.++ .+|. .+++|
T Consensus 121 ------------------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-------------~lp~----~l~~L 162 (571)
T 3cvr_A 121 ------------------SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLT-------------MLPE----LPTSL 162 (571)
T ss_dssp ------------------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-------------CCCC----CCTTC
T ss_pred ------------------CCCEEECCCCcCCCCCC---cCccccEEeCCCCccC-------------cCCC----cCCCc
Confidence 45555555555544544 3455555555555554 2332 14455
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCC-------CEEECcCCcccccCCcccCCCCCC
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL-------DLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
+.|++++|.+++ +|. +. ++|+.|++++|+++ .+|. + .. +| +.|++++|.++. +|..+..+++|
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L 232 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRITH-IPENILSLDPT 232 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C-C----------CCEEEECCSSCCCC-CCGGGGGSCTT
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCccee-cCHHHhcCCCC
Confidence 555555555554 333 33 55666666666665 5554 2 11 44 666666666653 34444456666
Q ss_pred CEEecccccccC
Q 046908 241 HWLYLDNNHFSG 252 (551)
Q Consensus 241 ~~L~L~~n~l~~ 252 (551)
+.|++++|.+++
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 666666666665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=166.74 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=87.0
Q ss_pred CCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccc
Q 046908 213 CVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSV 292 (551)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 292 (551)
+++|+.|++++|.+... ..+..+++|++|++++|.+++.. . +..+++|++|++++|.+++... ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK------P-LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc------c-cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 55677777777766543 23556666666666666665421 1 5566666666666666554321 1145555
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
++|++++|.++ .+ ..+..+++|+.|++++|++ ++.
T Consensus 115 ~~L~L~~n~i~-------~~-~~l~~l~~L~~L~l~~n~l-----------------------------------~~~-- 149 (291)
T 1h6t_A 115 KSLSLEHNGIS-------DI-NGLVHLPQLESLYLGNNKI-----------------------------------TDI-- 149 (291)
T ss_dssp CEEECTTSCCC-------CC-GGGGGCTTCCEEECCSSCC-----------------------------------CCC--
T ss_pred CEEECCCCcCC-------CC-hhhcCCCCCCEEEccCCcC-----------------------------------Ccc--
Confidence 55555555544 11 2344444555555555544 422
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
..+..+++|++|++++|++++..+ +..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 344445555555555555543332 44555555555555555432 2 2444555555555555544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=158.07 Aligned_cols=157 Identities=23% Similarity=0.267 Sum_probs=131.7
Q ss_pred CCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 269 LELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 269 L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
-+.++.+++.++..+... .++|++|++++|.++. ..|..+..+++|++|++++|++. .+|...
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~-------- 83 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLG-ALPVGV-------- 83 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCC-CCCTTT--------
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCC-CcChhh--------
Confidence 567899998888777654 4889999999998873 44667888999999999999997 444332
Q ss_pred HhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 046908 349 RFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNF 428 (551)
Q Consensus 349 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 428 (551)
|..+++|+.|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++
T Consensus 84 --~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 84 --FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp --TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred --cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 577889999999999999777777889999999999999998 66778889999999999999999777778899999
Q ss_pred CCeEECCCCccccCCCC
Q 046908 429 LSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 429 L~~l~l~~N~l~~~~~~ 445 (551)
|+.|++++|++.|.++.
T Consensus 161 L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCEEECTTSCBCTTBGG
T ss_pred CCEEEeeCCCccCCcch
Confidence 99999999999887763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=169.96 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=162.3
Q ss_pred CCCCCEEECcCCCCc--ccCCccCCCCCCCCEEEcccCcCccccchhccC--------CCCCCEeeCCCCccccccChhh
Q 046908 6 LKNLFELDLSSNNFE--GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTN--------LTSLEYLDRFSINFQGTISINS 75 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~ 75 (551)
+++|++|||++|+|. ...+..+ +.++.+.+..|. +.+.+|.+ +++|++|++.+ ++. .++..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 788999999999988 2222222 224555555553 33455666 88888888776 555 566677
Q ss_pred hcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCC----CCCc-hhhhCCCCCC-EEEccCCcccccCCCCCC
Q 046908 76 LANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL----HVIP-SFLLQHYHLI-FLDLSNNKVVGNFPICSN 149 (551)
Q Consensus 76 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l----~~l~-~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~ 149 (551)
|.+|++|+.++++.|... .++..+|..+.++..+....... ..+. ..+..+..|+ .+.+....
T Consensus 120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---------- 188 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---------- 188 (329)
T ss_dssp TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC----------
T ss_pred hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC----------
Confidence 888888888888766533 56666777777777666655221 1221 2344555555 34433221
Q ss_pred CcccccCChhHhhh---cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcc
Q 046908 150 NNFAGKLPRNMGIV---LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226 (551)
Q Consensus 150 ~~~~~~l~~~~~~~---l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 226 (551)
.++..++.. ..++..+.+.++-...........+++|+.+++++|+++ .++..+|.++.+|+.+++.+| +
T Consensus 189 -----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 189 -----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp -----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-C
T ss_pred -----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-c
Confidence 233333322 345555555544222111111123677777777777776 777777777777888887776 6
Q ss_pred cccCCcccCCCCCCC-EEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeec
Q 046908 227 FGQIFPKYMNLTHLH-WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYL 297 (551)
Q Consensus 227 ~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L 297 (551)
..+...+|.++++|+ .+++.+ .++.+.+.+ |.++++|+.++++.|.++.+...+| ++++|+.++.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-----F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA-----FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTT-----TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhh-----hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 667777777787787 777776 566555544 7778888888877777777777777 7777777753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=155.30 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=120.0
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+.. ++++|++++|.+.+..+..+ |..+++|++|+|++|.+++..|
T Consensus 11 ~~l~~s~~~l~-------~ip~~~~~--~l~~L~l~~n~i~~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK-------EIPRDIPL--HTTELLLNDNELGRISSDGL----------FGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-------SCCSCCCT--TCSEEECCSCCCCSBCCSCS----------GGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC-------cCccCCCC--CCCEEECCCCcCCccCCccc----------cccCCCCCEEECCCCCCCCcCH
Confidence 56777777766 56665433 78888888888875444322 4677888999999999998888
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCCCccCCcc
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATF 452 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 452 (551)
..|.++++|++|+|++|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|++.|.++.......+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l 151 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence 89999999999999999999888888999999999999999999988999999999999999999999887643222223
Q ss_pred CCcccCCCCCCCCc
Q 046908 453 DESSYTGNHELCGS 466 (551)
Q Consensus 453 ~~~~~~~n~~~c~~ 466 (551)
....+.++...|..
T Consensus 152 ~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 152 RKKSLNGGAARCGA 165 (192)
T ss_dssp HHHCCSGGGCBBCS
T ss_pred HHcCCCCCCCCCCC
Confidence 33334444444543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=171.36 Aligned_cols=180 Identities=24% Similarity=0.266 Sum_probs=130.5
Q ss_pred ccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhh-hcCCccEEEccCCcccccCCccc
Q 046908 107 LKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGI-VLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 107 L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
-+.++++++++..+|..+. ..++.|+|++|.++ .++...+. .+++|+.|++++|.+.+..+..|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~-------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS-------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCC-------------EECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCC-------------ccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 3578888888888886543 35788888888887 45555443 57788888888888887777788
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
..+++|+.|+|++|++. .++...|.++++|+.|+|++|++....+..|.++++|+.|+|++|.++..+... ...+..
T Consensus 85 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~~ 161 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNK 161 (361)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG--TC----
T ss_pred cCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH--hcCccc
Confidence 88888888888888887 677777777888888888888888877788888888888888888887644321 111256
Q ss_pred CCCCCEEECCCCcccccCCCcc-cccc--cceeecccccccc
Q 046908 266 LKSLELIDIFENSLSGSLVSSF-NLSS--VKHLYLQKNAITG 304 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~-~~~~--L~~L~L~~n~l~~ 304 (551)
+++|+.|++++|.++......+ .++. ++.|++.+|.+..
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 7788888888887776665544 4554 3667777776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=155.25 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=84.9
Q ss_pred cceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccC
Q 046908 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371 (551)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~ 371 (551)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|.. |.++++|+.|+|++|.++...
T Consensus 21 ~~~v~c~~~~l~-------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-----------~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 21 GTTVDCRSKRHA-------SVPAGIP--TNAQILYLHDNQITKLEPGV-----------FDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TTEEECTTSCCS-------SCCSCCC--TTCSEEECCSSCCCCCCTTT-----------TTTCTTCCEEECCSSCCCCCC
T ss_pred CCEeEccCCCcC-------ccCCCCC--CCCCEEEcCCCccCccCHHH-----------hhCccCCcEEECCCCCCCCcC
Confidence 344555555554 4444332 55666666666655443433 244555566666666665444
Q ss_pred CccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCC
Q 046908 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFA 450 (551)
Q Consensus 372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~ 450 (551)
+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+. ...+.
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 444555666666666666665555555555666666666666665 4455555556666666666666554433 33445
Q ss_pred ccCCcccCCCCCCCCcc
Q 046908 451 TFDESSYTGNHELCGSL 467 (551)
Q Consensus 451 ~~~~~~~~~n~~~c~~~ 467 (551)
.+..+++.+||+.|+|+
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 55555566666666553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=180.71 Aligned_cols=194 Identities=23% Similarity=0.319 Sum_probs=145.0
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCC
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLK 267 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~ 267 (551)
+..+..+.++.+.+.+.++. ..++.|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..++
T Consensus 20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~ 87 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-------LTNLK 87 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG-------GGGCT
T ss_pred HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh-------hccCC
Confidence 34455566777777644443 3477889999999988754 257888999999999998876432 78889
Q ss_pred CCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 268 SLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 268 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+|+.|++++|.+.+.. ....+++|++|+|++|.++ .+ +.+..+++|+.|+|++|.+.+. ..
T Consensus 88 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~-------- 148 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-------DI-NGLVHLPQLESLYLGNNKITDI--TV-------- 148 (605)
T ss_dssp TCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-------CC-GGGGGCTTCSEEECCSSCCCCC--GG--------
T ss_pred CCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-------CC-ccccCCCccCEEECCCCccCCc--hh--------
Confidence 9999999999888753 2227888888888888876 33 3577788888888888888743 11
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 419 (551)
+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..
T Consensus 149 ---l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 149 ---LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ---GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ---hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 4677888888888888886555 77888888888888888754 35778888888888888887543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=163.27 Aligned_cols=172 Identities=22% Similarity=0.255 Sum_probs=108.6
Q ss_pred CCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCc
Q 046908 28 NNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQL 107 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 107 (551)
..+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LS--SLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GG--GGTTCTTC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-Ch--hhccCCCC
Confidence 3455555555555555522 2 25555555555555555553322 5555555555555554332 22 25666777
Q ss_pred cEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccccc
Q 046908 108 KVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGE 187 (551)
Q Consensus 108 ~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (551)
++|++++|.+..++ .+..+++|++|++++|.++ .+ . .+..+++|+.|++++|.+.+..+ +..
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-------------~~-~-~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-------------DI-T-VLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-------------CC-G-GGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-------------cc-h-hhccCCCCCEEEccCCccccchh--hcC
Confidence 77777777776663 4667777777777777776 33 1 22336778888888887776544 777
Q ss_pred CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccc
Q 046908 188 MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG 228 (551)
Q Consensus 188 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 228 (551)
+++|+.|++++|++. .++. +..+++|+.|++++|.+..
T Consensus 177 l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence 888888888888887 5553 5668888888888888765
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=167.67 Aligned_cols=287 Identities=13% Similarity=0.079 Sum_probs=180.8
Q ss_pred CCCccEEEccCCCCCCCchhhhC-CCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCC
Q 046908 104 TSQLKVLKLSDCHLHVIPSFLLQ-HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182 (551)
Q Consensus 104 l~~L~~L~l~~n~l~~l~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~ 182 (551)
+.+++.|.++++--..-...+.. +++|+.|||++|++.... ...+. ++.+..+.+..+. +.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~------~~~~~--------~~~~~~~~~~~~~---I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYS------GKAGT--------YPNGKFYIYMANF---VPA 86 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEE------ESSSS--------SGGGCCEEECTTE---ECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEec------Ccccc--------ccccccccccccc---cCH
Confidence 34688888886422111123444 788889999888876100 00011 1223344444443 333
Q ss_pred ccccc--------CCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccc----
Q 046908 183 YSIGE--------MKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHF---- 250 (551)
Q Consensus 183 ~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---- 250 (551)
.+|.+ +++|+.+++.+ +++ .++..+|.+|++|+.+++++|.+..+.+.+|.++.++..+.+..+..
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 45666 88888888888 777 78888888888888888888888888888888877777776655321
Q ss_pred cCcCCCchhhHhhccCCCCC-EEECCCCccc-ccC-CCcccccccceeeccccccccCccceeccCccc-cccCCCceEE
Q 046908 251 SGKMDDANILVQLSQLKSLE-LIDIFENSLS-GSL-VSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI-NELSNLHVLL 326 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~-~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~l~~L~~L~ 326 (551)
...... .|..+..|+ .+.+....-. ... .......++..+.+.++-.. .-...+ ..+++|+.++
T Consensus 165 ~~i~~~-----~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 165 NRWEHF-----AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-------ADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp TTTTTS-----CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-------HHHHHHHHHCTTCCEEE
T ss_pred cccccc-----ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-------HHHHHHHHhcCCCeEEE
Confidence 111112 255666666 4444432211 100 00113455555555543111 001111 2377888888
Q ss_pred ecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCc-EEEcCCCCCCCcccccccCCCCC
Q 046908 327 LRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIR-ALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 327 l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
+++|+++ .+|.. .|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|
T Consensus 233 L~~n~i~-~I~~~----------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 233 ISKTNAT-TIPDF----------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTBCCC-EECTT----------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred CCCCCcc-eecHh----------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 8888877 44443 2678888888888887 6656677788888888 888888 6776667788888888
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEEC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNV 434 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 434 (551)
+.|++++|.++.+.+.+|.++++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888888777778888888887753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=176.16 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=157.0
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
.+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 45566677777765443 567899999999999997 6663 5668999999999999987655 889999999999
Q ss_pred ccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceE
Q 046908 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L 325 (551)
++|.+.+.. .+..+++|+.|++++|.+.+.. ....+++|+.|+|++|.++ .+ ..+..+++|+.|
T Consensus 95 s~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 95 DENKIKDLS-------SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-------DI-TVLSRLTKLDTL 158 (605)
T ss_dssp CSSCCCCCT-------TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-------CC-GGGGSCTTCSEE
T ss_pred cCCCCCCCh-------hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-------Cc-hhhcccCCCCEE
Confidence 999987642 3788999999999999998753 2238899999999999887 33 567889999999
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccc
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 399 (551)
+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.....+
T Consensus 159 ~Ls~N~l~~~~~-------------l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 159 SLEDNQISDIVP-------------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp ECCSSCCCCCGG-------------GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred ECcCCcCCCchh-------------hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence 999999985443 36778899999999999854 468899999999999999886543333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-20 Score=197.19 Aligned_cols=189 Identities=17% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccc------------cChhhhcCCCCCCEEE-cccCcccc
Q 046908 28 NNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT------------ISINSLANHSKLEVLL-ISSGSNML 94 (551)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~------------~~~~~~~~l~~L~~L~-l~~n~~~~ 94 (551)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|..... ..+..+..+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 67889999999999998 7899999999999999865532111 1112233333333333 22111
Q ss_pred cccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccC
Q 046908 95 QVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK 174 (551)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~ 174 (551)
+.+|+.+.+++|.+..++. ..|+.|++++|.++ .+|. +..+++|+.|++++
T Consensus 422 ---------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~-------------~lp~--~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 422 ---------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT-------------VLCH--LEQLLLVTHLDLSH 472 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS-------------SCCC--GGGGTTCCEEECCS
T ss_pred ---------cchhhhhhhhcccccccCc-----cCceEEEecCCCCC-------------CCcC--ccccccCcEeecCc
Confidence 0112222223332222221 12455555555554 3332 22244555555555
Q ss_pred CcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccC-CcccCCCCCCCEEecccccccCc
Q 046908 175 NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQI-FPKYMNLTHLHWLYLDNNHFSGK 253 (551)
Q Consensus 175 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 253 (551)
|.+. .+|..+..+++|+.|++++|+++ .+| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCC-CCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5554 34445555555555555555554 344 2334555555555555555443 44555555555555555555443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=157.21 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=209.9
Q ss_pred CCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEE
Q 046908 6 LKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85 (551)
Q Consensus 6 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (551)
+..++.+.+.. +++.+...+|.++ +|+.+++..+ ++.+...+|.+. +|+.+.+.. ++. .+...+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 36677788755 4776777888885 7999999877 776778888884 799998875 444 5666789999999999
Q ss_pred EcccCcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc
Q 046908 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164 (551)
Q Consensus 86 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l 164 (551)
++..|. ...++..+|. +.+|+.+.+..+ +..++. .|.++++|+.+++..+ ++ .++...|..
T Consensus 186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------~I~~~aF~~- 247 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------TIGQEAFRE- 247 (401)
T ss_dssp ECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------EECTTTTTT-
T ss_pred ecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------Ccccccccc-
Confidence 998765 5556777777 589999999854 776664 6778889999999875 44 666777765
Q ss_pred CCccEEEccCCcccccCCcccccCCCCcEEECcCCccc----eeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCC
Q 046908 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFS----GELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240 (551)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 240 (551)
.+|+.+.+. +.+..+...+|.++++|+.+++.++.+. ..++...|.+|++|+.+++.+ .+..+...+|.+|++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 689999994 4566677889999999999999887653 248888999999999999994 5887888999999999
Q ss_pred CEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cc-cccceeeccccccc
Q 046908 241 HWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NL-SSVKHLYLQKNAIT 303 (551)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~-~~L~~L~L~~n~l~ 303 (551)
+.++|..+ ++.+...+ |.++ +|+.+++.+|.........| ++ ..++.|++..+.+.
T Consensus 326 ~~l~lp~~-l~~I~~~a-----F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSA-----FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECTT-CCEECTTS-----SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEEECcc-ccEEcHHh-----CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99999665 66655555 8999 99999999999888888877 66 47899999888654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=149.97 Aligned_cols=151 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|+.|++++|.++... ....+++|++|++++|.++ . +..+..+++|++|++++|.+++..|..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-------~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l----- 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-------N-YNPISGLSNLERLRIMGKDVTSDKIPNL----- 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-------C-CGGGTTCTTCCEEEEECTTCBGGGSCCC-----
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-------c-chhhhcCCCCCEEEeECCccCcccChhh-----
Confidence 344444444444444322 1114455555555555443 1 2245556666666666666665444433
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCC-CCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNF-LSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
..+++|+.|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|+.|++++|++++ ++ .+.
T Consensus 109 ------~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~ 178 (197)
T 4ezg_A 109 ------SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIE 178 (197)
T ss_dssp ------TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGG
T ss_pred ------cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-Hhc
Confidence 455666777777777766666667777777777777776 553 33 46677777777777777764 33 566
Q ss_pred CCCCCCeEECCCCccc
Q 046908 425 GLNFLSNFNVSYNNLS 440 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~ 440 (551)
.+++|++|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 7777777777777764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=157.57 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccccccee
Q 046908 216 LDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295 (551)
Q Consensus 216 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 295 (551)
+..++++++.+.+.. .+..+++|+.|++++|.++... .+..+++|++|++++|.+++..+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~~~----------- 80 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDLSP----------- 80 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG-----------
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCChh-----------
Confidence 444455555554332 3445555555555555554321 24455555555555555554433
Q ss_pred eccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc
Q 046908 296 YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI 375 (551)
Q Consensus 296 ~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (551)
+..+++|++|++++|++++ +|.. .. ++|+.|++++|.+++ + ..+
T Consensus 81 --------------------l~~l~~L~~L~L~~N~l~~-l~~~------------~~-~~L~~L~L~~N~l~~-~-~~l 124 (263)
T 1xeu_A 81 --------------------LKDLTKLEELSVNRNRLKN-LNGI------------PS-ACLSRLFLDNNELRD-T-DSL 124 (263)
T ss_dssp --------------------GTTCSSCCEEECCSSCCSC-CTTC------------CC-SSCCEEECCSSCCSB-S-GGG
T ss_pred --------------------hccCCCCCEEECCCCccCC-cCcc------------cc-CcccEEEccCCccCC-C-hhh
Confidence 4444445555555554442 2211 11 445555555555553 2 235
Q ss_pred cCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccC
Q 046908 376 GQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 376 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 442 (551)
..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 5556666666666666543 2 455566666666666666544 4455566666666666665544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-16 Score=154.18 Aligned_cols=242 Identities=13% Similarity=0.093 Sum_probs=140.7
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.+..++.+.+.++ ++.+...+|.+. +|+.+.+..+ +. .++..+|.++ +|+.+.+.. ....+...+|..+++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCC
Confidence 3456666666654 444556666664 6777776544 33 4555566664 577776653 34556666677777777
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccC
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 188 (551)
.+++.+|++..++...+.+.+|+.+.+..+ +. .++...|..+++|+.+++..+ +..+...+|.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-------------~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-------------EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-------------EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hh-------------eehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 777777777666665555666777766633 44 555555555666666666653 34445555555
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCccc-----ccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFF-----GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+|+.+.+ .+.+. .++..+|.+|++|+.+++.+|.+. .+...+|.+|++|+.+++.+ .++.+...+ |
T Consensus 248 ~~L~~i~l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a-----F 319 (401)
T 4fdw_A 248 SGITTVKL-PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL-----L 319 (401)
T ss_dssp CCCSEEEE-ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT-----T
T ss_pred CCccEEEe-CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh-----h
Confidence 55666666 33444 566666666666666666655443 34455566666666666652 344444433 5
Q ss_pred ccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 264 SQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.++.+|+.+.+..+ ++.+...+| ++ +|+.+++.+|.+.
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 66666666666433 444555555 45 5666666555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=145.01 Aligned_cols=131 Identities=26% Similarity=0.317 Sum_probs=109.9
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|.. |.++++|+.|+|++|.+++..+
T Consensus 13 ~~l~~~~~~l~-------~ip~~~~--~~l~~L~L~~n~i~-~ip~~-----------~~~l~~L~~L~Ls~N~i~~i~~ 71 (193)
T 2wfh_A 13 TVVRCSNKGLK-------VLPKGIP--RDVTELYLDGNQFT-LVPKE-----------LSNYKHLTLIDLSNNRISTLSN 71 (193)
T ss_dssp TEEECTTSCCS-------SCCSCCC--TTCCEEECCSSCCC-SCCGG-----------GGGCTTCCEEECCSSCCCCCCT
T ss_pred CEEEcCCCCCC-------cCCCCCC--CCCCEEECCCCcCc-hhHHH-----------hhcccCCCEEECCCCcCCEeCH
Confidence 67888888887 7776654 68999999999987 66654 4677888999999999987777
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.|.+.
T Consensus 72 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 888999999999999999998888889999999999999999987666778888999999999999887664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=144.10 Aligned_cols=151 Identities=17% Similarity=0.280 Sum_probs=95.5
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 333 4666777777777777654 333 34457777777777777776666677777777777
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCc-ccccCCCcccccccceeeccccccccCccceeccCccccccCCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS-LSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL 322 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L 322 (551)
++++|.+++ ..+..+..+++|++|++++|. ++... ....+++|++|++++|.++ .++ .+..+++|
T Consensus 118 ~Ls~n~i~~-----~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-------~~~-~l~~l~~L 183 (197)
T 4ezg_A 118 DISHSAHDD-----SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-------DYR-GIEDFPKL 183 (197)
T ss_dssp ECCSSBCBG-----GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-------CCT-TGGGCSSC
T ss_pred EecCCccCc-----HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-------ChH-HhccCCCC
Confidence 777777765 345557777777777777776 44432 2226666777777776665 233 45566666
Q ss_pred ceEEecCCccc
Q 046908 323 HVLLLRGNSLQ 333 (551)
Q Consensus 323 ~~L~l~~n~l~ 333 (551)
+.|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 66666666654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=145.92 Aligned_cols=131 Identities=24% Similarity=0.345 Sum_probs=111.0
Q ss_pred ceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCC
Q 046908 323 HVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNL 402 (551)
Q Consensus 323 ~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 402 (551)
+.+++++|.++ .+|..+ .++++.|++++|.++ .+|..|.++++|++|++++|+|++..+..|.++
T Consensus 13 ~~l~~~~~~l~-~ip~~~-------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI-------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS-SCCSCC-------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCC-cCCCCC-------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 57888888887 667543 247889999999998 677889999999999999999998888889999
Q ss_pred CCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCccc
Q 046908 403 KMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 403 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
++|++|++++|++++..|..|..+++|++|++++|+++...+. ...+..+..+++.+|||.|+|..
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9999999999999988888899999999999999999877765 55677888889999999998864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=144.85 Aligned_cols=178 Identities=21% Similarity=0.251 Sum_probs=121.1
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCc--cccccCCCceEEecCCcccccCChhhhhhhchh
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPY--QINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 347 (551)
+.+++++|.++.++... .+++++|++++|.++ .++. .+..+++|++|++++|.+++..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELG-------RISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------- 73 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCC-------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCC-------ccCCccccccCCCCCEEECCCCCCCCcCHhH--------
Confidence 56667777665554432 236777777777776 3443 3777888888888888888666655
Q ss_pred hHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCC
Q 046908 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLN 427 (551)
Q Consensus 348 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 427 (551)
|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..|..|..+++|+.|++++|.+.+..+-.+ -..
T Consensus 74 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~ 149 (192)
T 1w8a_A 74 ---FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAE 149 (192)
T ss_dssp ---TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHH
T ss_pred ---cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHH
Confidence 4677888999999999988888888999999999999999998888889999999999999999886543110 001
Q ss_pred CCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCccccC
Q 046908 428 FLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRK 470 (551)
Q Consensus 428 ~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~ 470 (551)
.++...+..+...+..|.. +....-.++..+.+.|..+...
T Consensus 150 ~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~ 190 (192)
T 1w8a_A 150 WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSE 190 (192)
T ss_dssp HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---
T ss_pred HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCC
Confidence 2333344455555544432 2333334555666777654433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=152.18 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=99.5
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
.++..++++++.+..++ .+..+++|++|++++|.++ .++ .+ ..+++|+.|++++|.+.+..+
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-------------~l~-~l-~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-------------SLA-GM-QFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-------------CCT-TG-GGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-------------cch-HH-hhCCCCCEEECCCCccCCChh--
Confidence 34555666666666665 4566666777777776665 343 12 235666666666666665433
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
+..+++|+.|++++|++. .++... . ++|+.|++++|++++. ..+..+++|+.|++++|.+++.. .+.
T Consensus 81 l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-------~l~ 147 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-------MLG 147 (263)
T ss_dssp GTTCSSCCEEECCSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-------GGG
T ss_pred hccCCCCCEEECCCCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-------HHc
Confidence 666667777777777666 444322 1 6666666666666553 24666666666666666665431 256
Q ss_pred cCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 265 QLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.+++|+.|++++|.+++. ..+ .+++|+.|++++|.++
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 666666666666666655 222 5666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-18 Score=178.75 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=94.4
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
.|+.|++++|.+++ +|. + ..+++|+.|+|++|.++ .+|..++++++|+.|+|++|++++ +| .+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~-----------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L-----------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G-----------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred CceEEEecCCCCCC-CcC-c-----------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 58899999999884 554 3 66788899999999998 788899999999999999999986 55 788
Q ss_pred CCCCCCEEeCCCCcCcccC-CCCCCCCCCCCeEECCCCccccCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHI-PPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++++|+.|+|++|++++.. |..+..+++|+.|++++|++++.++.
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999999776 88899999999999999999887765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=150.48 Aligned_cols=332 Identities=12% Similarity=0.106 Sum_probs=205.3
Q ss_pred CcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccC
Q 046908 19 FEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKT 98 (551)
Q Consensus 19 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 98 (551)
++.+-..+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.++.+|+.+.+..+ ...+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecc
Confidence 44455566777777777777643 55566666777777777776533 22 445556667777766655422 334444
Q ss_pred CCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcc
Q 046908 99 ETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIF 177 (551)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~ 177 (551)
.+|..+..++...... ...+. ..+.++++|+.+.+.++. . .++...|..+++|+.+.+..+ +
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-------------~I~~~~F~~c~~L~~i~l~~~-~ 196 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-------------TLHNGLFSGCGKLKSIKLPRN-L 196 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-------------EECTTTTTTCTTCCBCCCCTT-C
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-------------eeccccccCCCCceEEEcCCC-c
Confidence 5565554333322221 12222 346666777777775442 2 455556666777777777665 4
Q ss_pred cccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCc
Q 046908 178 EGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDA 257 (551)
Q Consensus 178 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 257 (551)
......+|.++..|+.+.+..+.. .+....+ ...+|+.+.+... +..+...+|..+..++.+.+..+... +....
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~ 271 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSL 271 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred eEeCchhhccccccceeecCCCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccc
Confidence 445566777777777777765543 2333333 3567777777543 34455567778888888888765432 22222
Q ss_pred hhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceecc-CccccccCCCceEEecCCccccc
Q 046908 258 NILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI-PYQINELSNLHVLLLRGNSLQGH 335 (551)
Q Consensus 258 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 335 (551)
|..+..++.+....+.+. ...| ++.+|+.+.+.++ ++ .+ ..+|.+|.+|+.+++..+ ++ .
T Consensus 272 -----F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-------~I~~~aF~~c~~L~~i~lp~~-v~-~ 333 (394)
T 4fs7_A 272 -----FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-------FIGEEAFESCTSLVSIDLPYL-VE-E 333 (394)
T ss_dssp -----TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-------EECTTTTTTCTTCCEECCCTT-CC-E
T ss_pred -----cccccccceeccCceeec---cccccccccccccccccc-cc-------eechhhhcCCCCCCEEEeCCc-cc-E
Confidence 777778887777665432 2344 7788888888654 33 33 345778888888887543 33 2
Q ss_pred CChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEE
Q 046908 336 IPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESL 408 (551)
Q Consensus 336 ~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 408 (551)
+...+|.++.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++ ....+|.++++|+.+
T Consensus 334 ----------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 334 ----------IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----------ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ----------EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 22334788888999988776 66566778999999999998765 33 335678888888765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-15 Score=148.91 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=143.8
Q ss_pred CCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhh
Q 046908 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
...+|.++.+|+.+.+.++. . .++..+|.++.+|+.+++..+ +..+...+|.++..|+.+.+..+.... .
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i-------~ 223 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL-------G 223 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-------C
T ss_pred chhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe-------e
Confidence 34567777777777776543 3 567777777777777777665 445556677777777777766543321 1
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 339 (551)
..+....+|+.+.+... ++.....+| ++..++.+.+..+... .....|..+..++.+....+.+ +.
T Consensus 224 ~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-------i~~~~F~~~~~l~~~~~~~~~i----~~- 290 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-------IGGSLFYNCSGLKKVIYGSVIV----PE- 290 (394)
T ss_dssp TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-------ECSCTTTTCTTCCEEEECSSEE----CT-
T ss_pred hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-------eeccccccccccceeccCceee----cc-
Confidence 11334466777766543 344444455 6777777777665432 2234566777777777655432 22
Q ss_pred hhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccC
Q 046908 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHI 419 (551)
Q Consensus 340 ~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 419 (551)
..|.++.+|+.+.+..+ +......+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+.
T Consensus 291 ---------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 291 ---------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp ---------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ---------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 12677778888877654 44455667888888888888654 65555677888888888888776 66566
Q ss_pred CCCCCCCCCCCeEECCCC
Q 046908 420 PPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 420 p~~~~~l~~L~~l~l~~N 437 (551)
..+|.++++|+.+++..+
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 678888888888887543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-17 Score=176.32 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=107.5
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCc-----EEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCC
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELY-----MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLT 238 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 238 (551)
.+.+..|++.+|.+... +..+.....|. .++++.|++. ++...+..+..|+.|+|++|.+.. ++..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCC
T ss_pred CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCC-CChhhcCCC
Confidence 35678888888887753 32222222222 2233334332 455566778889999999998874 455555888
Q ss_pred CCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCcccc
Q 046908 239 HLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQIN 317 (551)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 317 (551)
+|++|+|++|.++ .+|..+..+++|++|+|++|.++.+ |..+ .+++|++|+|++|.|+ .+|..++
T Consensus 248 ~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-------~lp~~~~ 313 (727)
T 4b8c_D 248 FLTRLYLNGNSLT------ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-------TLPWEFG 313 (727)
T ss_dssp SCSCCBCTTSCCS------CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-------CCCSSTT
T ss_pred CCCEEEeeCCcCc------ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-------ccChhhh
Confidence 8999999999887 3344588888999999999988855 4445 8888999999998887 7788888
Q ss_pred ccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCC--------
Q 046908 318 ELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN-------- 389 (551)
Q Consensus 318 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------- 389 (551)
.+++|+.|+|++|++++.+|..+..... ....++|++|.+++.+|.. |+.|+++.|
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~----------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSV----------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD 377 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHH----------HHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcch----------hhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence 8889999999999988777776533211 1224678888888777753 555666666
Q ss_pred CCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.+.+..+..+..+..++...+++|-+.
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------CCC
T ss_pred Cccccccchhhcccccceeeeeccccc
Confidence 333333344445555566666666554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=172.25 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=83.6
Q ss_pred CCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhh
Q 046908 181 IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANIL 260 (551)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 260 (551)
.+..+..++.|+.|+|++|++. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.++. +|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~------lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------LP 286 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS------CC
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc------cC
Confidence 3555666667777777777766 6666655 4666777777777666 455666667777777777776662 22
Q ss_pred HhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccC-CCceEEecCCcccccCChh
Q 046908 261 VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELS-NLHVLLLRGNSLQGHIPNE 339 (551)
Q Consensus 261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~ 339 (551)
..+..+++|++|+|++|.++.++.....+++|++|+|++|.+++ .+|..+..+. .+..+++++|.+++.+|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK------QFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC------CChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 33666667777777777666544332266677777777776652 4444443321 1223566666666665554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=133.07 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=106.6
Q ss_pred cceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccC
Q 046908 292 VKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEI 371 (551)
Q Consensus 292 L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~ 371 (551)
.+.++++++.++ .+|..+. ++|++|++++|++++..+.. |..+++|++|++++|.+++..
T Consensus 9 ~~~l~~~~~~l~-------~~p~~~~--~~l~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 9 GTEIRCNSKGLT-------SVPTGIP--SSATRLELESNKLQSLPHGV-----------FDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TTEEECCSSCCS-------SCCTTCC--TTCSEEECCSSCCCCCCTTT-----------TTTCTTCSEEECCSSCCCCCC
T ss_pred CCEEEecCCCCc-------cCCCCCC--CCCcEEEeCCCcccEeCHHH-----------hcCcccccEEECCCCcceEeC
Confidence 356667777665 5554432 67888888888887433332 467788899999999888666
Q ss_pred CccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 372 PREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 67788999999999999999987777888999999999999999976666778899999999999999887763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=131.80 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCEEECCCCccc-ccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 267 KSLELIDIFENSLS-GSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 267 ~~L~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
++|+.|++++|.++ +..+..+ .+++|++|++++|.++ .+ ..+..+++|++|++++|.+++.+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----- 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------SV-SNLPKLPKLKKLELSENRIFGGLDML----- 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-------CC-SSCCCCSSCCEEEEESCCCCSCCCHH-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-------Ch-hhhccCCCCCEEECcCCcCchHHHHH-----
Confidence 55666666666655 2333333 5555555555555554 22 33444555555555555555333322
Q ss_pred chhhHhhhccccCceEecCCCcCcccC-CccccCCCCCcEEEcCCCCCCCccc---ccccCCCCCCEEeCCCCcCc
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEI-PREIGQLQNIRALNLSNNFLSGAIP---ESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 416 (551)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 91 ------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 ------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 133444455555555444221 1344444455555555554443332 23444444444444444444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=134.49 Aligned_cols=134 Identities=20% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
..++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence 4577888888888887 56777788888888888888888855 678888888888888888776443 3344566666
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch----hhhCCCCCCEEEccCCccc
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS----FLLQHYHLIFLDLSNNKVV 141 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~~~L~~L~Ls~n~l~ 141 (551)
+|++++|.+........+..+++|++|++++|.+..+|. .+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666654332222345555566666666665555443 4555555555555555544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=128.21 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCCCCEEECcCCCCc-ccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 5 NLKNLFELDLSSNNFE-GHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
..++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 4577889999999887 67777888889999999999988855 678888888888888888875433 3344455555
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCC
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 117 (551)
+|++++|.+........+..+++|++|++++|.+
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 5555544432211112233344444444444444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=137.91 Aligned_cols=314 Identities=15% Similarity=0.173 Sum_probs=205.7
Q ss_pred CCCCCC-CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCc---CccccchhccCCCCCCEeeCCCCccccccChhhhc
Q 046908 2 GICNLK-NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQ---LSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLA 77 (551)
Q Consensus 2 ~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 77 (551)
||.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ +. .+...+|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhh
Confidence 567774 5899998754 776778889999999999998764 66677788999999998876543 33 45667788
Q ss_pred CCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCC
Q 046908 78 NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLP 157 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~ 157 (551)
.+.+|+.+.+..+ ...+...+|..+.+|+.+.+.++ +..+....+....|+.+.+..+-. .+.
T Consensus 135 ~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--------------~i~ 197 (394)
T 4gt6_A 135 HCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--------------RIG 197 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--------------EEC
T ss_pred hhcccccccccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--------------ccc
Confidence 9999999988543 45667778888999999988764 666666556667888888765432 233
Q ss_pred hhHhhhcCCccEEEccCCcccccCCcc-------------cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCC
Q 046908 158 RNMGIVLQKLIYLDMPKNIFEGDIPYS-------------IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224 (551)
Q Consensus 158 ~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 224 (551)
...+..+..+................. +.....+..+.+. +.+. .+...+|.++..|+.+.+.++
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~-~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVA-RIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEE-EECTTTTTTCSSCCEEECCTT
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-Ccce-EcccceeeecccccEEecccc
Confidence 333444556666555443322111101 1122334444443 2333 566677888888888888765
Q ss_pred cccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccc
Q 046908 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 225 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 303 (551)
.. .+...+|.++++|+.+.+. +.++.+...+ |.++.+|+.+++..+ ++.+...+| ++.+|+++.+..+ ++
T Consensus 276 ~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~a-----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~ 346 (394)
T 4gt6_A 276 VV-SIGTGAFMNCPALQDIEFS-SRITELPESV-----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT 346 (394)
T ss_dssp CC-EECTTTTTTCTTCCEEECC-TTCCEECTTT-----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred cc-eecCcccccccccccccCC-CcccccCcee-----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence 43 4566778888888888886 4455555544 888888888888754 666777777 8888998888654 43
Q ss_pred cCccceeccC-ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcC
Q 046908 304 GDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNEL 367 (551)
Q Consensus 304 ~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l 367 (551)
.+. .+|.+|++|+.+++.++.... ..|..+.+|+.+.+..+.+
T Consensus 347 -------~I~~~aF~~C~~L~~i~~~~~~~~~--------------~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 347 -------KIPESAFSNCTALNNIEYSGSRSQW--------------NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -------BCCGGGGTTCTTCCEEEESSCHHHH--------------HTCBCCCCC----------
T ss_pred -------EEhHhHhhCCCCCCEEEECCceeeh--------------hhhhccCCCCEEEeCCCCE
Confidence 343 568888999999888875431 1245677788888776654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=127.79 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=116.4
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+.+++++|.++ .+|..+ .++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~-------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI-------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEecCCCCc-cCCCCC-------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 3578999999987 566432 36789999999999977777889999999999999999988778899
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
.+++|+.|++++|++++..+..+..+++|++|++++|++++..+. ...+..+..+++.+|++.|+|+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999999999987777889999999999999999977766 3567889999999999999886
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=124.93 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCccEEEccCCccc-ccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 165 QKLIYLDMPKNIFE-GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 165 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
++++.|++++|.+. +.+|..+..+++|+.|++++|++. .+ ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 445555555666666666666555 22 223445555555555555554444444445555555
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSL 283 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 283 (551)
++++|.+++. ..+..+..+++|++|++++|.+++..
T Consensus 94 ~ls~N~i~~~----~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDL----STIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSH----HHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCCh----HHHHHHhhCCCCCEEeCcCCcccchH
Confidence 5555554431 11233445555555555555544443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=123.05 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=97.0
Q ss_pred CCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccccccc
Q 046908 321 NLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFS 400 (551)
Q Consensus 321 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 400 (551)
..+.+++++|.++ .+|..+ .+.|+.|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~-------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI-------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEeCCCCcC-ccCccC-------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 3567888888887 566543 26788999999999988888999999999999999999988888899
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 401 NLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 401 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
++++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999999999987777899999999999999999988764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=127.53 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch--hhhCCCCCCEE
Q 046908 56 SLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS--FLLQHYHLIFL 133 (551)
Q Consensus 56 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L 133 (551)
+|++|++++|.+.+. ..+..+++|++|++++|.+. .+++..|..+++|++|++++|.++.+|. .+..+++|++|
T Consensus 43 ~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 444444444444432 22444444444444444422 2333334556667777777777766665 66677777777
Q ss_pred EccCCcccccCCCCCCCcccccCChh---HhhhcCCccEEEccCCccc
Q 046908 134 DLSNNKVVGNFPICSNNNFAGKLPRN---MGIVLQKLIYLDMPKNIFE 178 (551)
Q Consensus 134 ~Ls~n~l~~~~~~~~~~~~~~~l~~~---~~~~l~~L~~L~L~~n~~~ 178 (551)
++++|.++ .+|.. ++..+++|+.|++++|...
T Consensus 119 ~l~~N~i~-------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-------------NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-------------GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-------------CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777776 44543 3445777777777777664
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=128.75 Aligned_cols=137 Identities=9% Similarity=0.180 Sum_probs=75.5
Q ss_pred ccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccC
Q 046908 279 LSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYM 357 (551)
Q Consensus 279 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L 357 (551)
+......+| ++..|+.+.+.++..+ .-..+|.++++|+.+.+.. .++ .++ ...|.++.+|
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~~i~l~~-~i~-~I~----------~~aF~~c~~L 313 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQDIEFSS-RIT-ELP----------ESVFAGCISL 313 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCCEEECCT-TCC-EEC----------TTTTTTCTTC
T ss_pred ceEcccceeeecccccEEecccccce-------ecCcccccccccccccCCC-ccc-ccC----------ceeecCCCCc
Confidence 333444455 6666776666554322 1224466677777776642 222 222 2236777777
Q ss_pred ceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 358 AGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
+.+++..+ ++.....+|.+|++|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+..+..|+.+.+..|
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 77777654 44345567777777777777654 554556677777778887777775432 34556667777766655
Q ss_pred cc
Q 046908 438 NL 439 (551)
Q Consensus 438 ~l 439 (551)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-16 Score=140.75 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=37.6
Q ss_pred ccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCccc-ccccCCCCCCEEeCCCCcCcccCCCC----------C
Q 046908 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIP-ESFSNLKMTESLDLSHNRLSGHIPPQ----------L 423 (551)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~----------~ 423 (551)
++|+.|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++.+..|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 344455555554442 22 34445555555555555553222 34555555555555555555443332 4
Q ss_pred CCCCCCCeEE
Q 046908 424 TGLNFLSNFN 433 (551)
Q Consensus 424 ~~l~~L~~l~ 433 (551)
..++.|+.||
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4555555554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=120.29 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=95.6
Q ss_pred CceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccC
Q 046908 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSN 401 (551)
Q Consensus 322 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 401 (551)
-+.+++++|.++ .+|..+ .+.|+.|+|++|.+++..|..|.++++|++|+|++|+|++..+..|.+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCCCCC-ccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 367888888886 667643 267899999999999888889999999999999999999877777899
Q ss_pred CCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC
Q 046908 402 LKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD 445 (551)
Q Consensus 402 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 445 (551)
+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99999999999999977666799999999999999999987764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=123.29 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=59.6
Q ss_pred ccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 184 SIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 184 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+.++.+|+.|++++|++. .++. +....++|+.|++++|.+++. ..|..+++|++|++++|.+++.++.. +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----D 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----H
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----h
Confidence 3445666667777776665 4443 222233666666666666654 45566666666666666665433221 4
Q ss_pred ccCCCCCEEECCCCcccccCC-Ccc-cccccceeeccccccc
Q 046908 264 SQLKSLELIDIFENSLSGSLV-SSF-NLSSVKHLYLQKNAIT 303 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~ 303 (551)
..+++|++|++++|.+..... ..+ .+++|++|++++|.++
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555666666666665544332 122 4445555555555444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=119.15 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=98.4
Q ss_pred cCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 356 YMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
..+.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|.++++|+.|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 5676553 889999999999998889999999999999999999998878889999999999999
Q ss_pred CCccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 436 YNNLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 436 ~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
+|++++..+. ...+..++.+++.+|++.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999988876 6678899999999999999986
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=116.96 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=96.9
Q ss_pred ceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCC
Q 046908 358 AGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 6776654 89999999999999888999999999999999999999777777899999999999999
Q ss_pred ccccCCCC-CccCCccCCcccCCCCCCCCcc
Q 046908 438 NLSGPTPD-KEQFATFDESSYTGNHELCGSL 467 (551)
Q Consensus 438 ~l~~~~~~-~~~~~~~~~~~~~~n~~~c~~~ 467 (551)
++++..+. ...+..+..+++.+|++.|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99988776 6678899999999999999986
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-15 Score=136.00 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=96.3
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCC
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 337 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 337 (551)
++..+..+++|++|++++|.+++.+ .+ .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-------~l~~~~~~~~~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-------KIENLDAVADTLEELWISYNQIAS-LS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-------SCSSHHHHHHHCSEEEEEEEECCC-HH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-------cccchhhcCCcCCEEECcCCcCCc-CC
Confidence 4445777778888888888777743 44 7788888888888776 566666667888888888888773 22
Q ss_pred hhhhhhhchhhHhhhccccCceEecCCCcCcccCC-ccccCCCCCcEEEcCCCCCCCcccc----------cccCCCCCC
Q 046908 338 NELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP-REIGQLQNIRALNLSNNFLSGAIPE----------SFSNLKMTE 406 (551)
Q Consensus 338 ~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~ 406 (551)
. +..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+
T Consensus 110 -~-----------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 110 -G-----------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp -H-----------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred -c-----------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 1 3566778888888888874322 4677888888888888888765443 267788888
Q ss_pred EEeCCCCcCc
Q 046908 407 SLDLSHNRLS 416 (551)
Q Consensus 407 ~L~l~~n~l~ 416 (551)
.|| +|.++
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 886 66665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-14 Score=140.22 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCccc-----CCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY-----MNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
.+|+.|+|++|.+.+.....+...+.+|+.|+|++|.++......+ ...++|++|+|++|.++.... ..++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV-AVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH-HHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH-HHHHHHH
Confidence 3555555555554422222222223345555555555443222222 123445555555555432110 0233333
Q ss_pred ccCCCCCEEECCCCccc
Q 046908 264 SQLKSLELIDIFENSLS 280 (551)
Q Consensus 264 ~~l~~L~~L~l~~n~l~ 280 (551)
..+++|++|++++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HTCSSCCEEECTTSSCH
T ss_pred hcCCCcCEEeCCCCCCC
Confidence 44555555555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=125.88 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=64.8
Q ss_pred hccccCceEecCC-CcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCC
Q 046908 352 SNLKYMAGLDLSS-NELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLS 430 (551)
Q Consensus 352 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 430 (551)
..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 4455667777764 777666666777777777777777777777777777777777777777777755555565555 77
Q ss_pred eEECCCCccccCCC
Q 046908 431 NFNVSYNNLSGPTP 444 (551)
Q Consensus 431 ~l~l~~N~l~~~~~ 444 (551)
.|++++|++.+.+.
T Consensus 107 ~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 107 ELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEEeeCCCccCCCc
Confidence 77777777776554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=123.93 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=96.6
Q ss_pred ceEecCCC-cCcccCCccccCCCCCcEEEcCC-CCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 358 AGLDLSSN-ELSGEIPREIGQLQNIRALNLSN-NFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 358 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
..++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 888 6888 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 436 YNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 436 ~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
+|+|++..+.......+..+.+.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 999998877644334488899999999999964
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-13 Score=132.22 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred ccccCceEecCCCcCccc----CCccccCCCCCcEEEcCCCCCCCc----ccccccCCCCCCEEeCCCCcCc
Q 046908 353 NLKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFLSGA----IPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
.+++|++|+|++|.+++. ++..+...++|++|+|++|.|++. +...+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 344455555555544422 123334444555555555555432 1122233444555555555444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-10 Score=109.36 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=35.0
Q ss_pred hhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
|.++.+|+.+.+.++.++.....+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 445555555555555444344445555555555555433 33333344555555555555433 333333444443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=106.88 Aligned_cols=297 Identities=11% Similarity=0.063 Sum_probs=184.0
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
...+|+.+.+.. .++.+-..+|.++++|+.++|..+ ++.+...+|.++ +|+.+.+..+ +. .+...+|..+ +|+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cccc
Confidence 345788888864 477677888999999999999765 666778888887 6777776433 33 4555667665 7999
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCCCCCc-hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhh
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP-SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~ 163 (551)
+.+..+ ...+...+|..+ +++.+.+..+ +..+. ..+..+..++.+.+..+................... ..+..
T Consensus 118 i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 192 (379)
T 4h09_A 118 FEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL-ESYPA 192 (379)
T ss_dssp EECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE-EECCT
T ss_pred ccCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee-ccccc
Confidence 888643 344555566654 5666665543 33332 356667777777766543221000000000000000 00111
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
...+....+..... ......+..+..++.+.+..+ +. .+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 33444444443322 244456666777887777554 33 566677777888888888665 555666778888888888
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceecc-CccccccCC
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRI-PYQINELSN 321 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~l~~ 321 (551)
.+..+ +..+...+ |..+.+|+.+.+.++.++.+...+| ++.+|+.+.+..+ ++ .+ ..+|.+|.+
T Consensus 269 ~l~~~-i~~i~~~a-----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-------~I~~~aF~~C~~ 334 (379)
T 4h09_A 269 NFYAK-VKTVPYLL-----CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-------TIQVYAFKNCKA 334 (379)
T ss_dssp EECCC-CSEECTTT-----TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTTTCTT
T ss_pred ccccc-ceeccccc-----cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-------EEHHHHhhCCCC
Confidence 87643 44433333 7788888888888777777777777 7788888888654 33 33 345777888
Q ss_pred CceEEecCC
Q 046908 322 LHVLLLRGN 330 (551)
Q Consensus 322 L~~L~l~~n 330 (551)
|+.+.+..+
T Consensus 335 L~~i~ip~~ 343 (379)
T 4h09_A 335 LSTISYPKS 343 (379)
T ss_dssp CCCCCCCTT
T ss_pred CCEEEECCc
Confidence 888877554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-09 Score=101.29 Aligned_cols=164 Identities=15% Similarity=0.245 Sum_probs=89.5
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc--cCCCCCEEECCCC--cccccCC
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS--QLKSLELIDIFEN--SLSGSLV 284 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n--~l~~~~~ 284 (551)
+...+++|+.|++++|.-.. .+. + .+++|++|++..+.+.. .....+. .+++|+.|+|+.+ ...+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~-----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~- 237 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPD-----SVVEDILGSDLPNLEKLVLYVGVEDYGFDG- 237 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCH-----HHHHHHHHSBCTTCCEEEEECBCGGGTCCS-
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCCh-----HHHHHHHHccCCCCcEEEEeccccccccch-
Confidence 34556777777777662111 111 2 26777777777766543 2222232 5677777766431 111100
Q ss_pred CcccccccceeeccccccccCccceeccCccc--cccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEec
Q 046908 285 SSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI--NELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDL 362 (551)
Q Consensus 285 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~L 362 (551)
... .+...+ ..+++|+.|++++|.+.+..+..+... ..+++|+.|+|
T Consensus 238 ---~~~--------------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a--------~~~~~L~~LdL 286 (362)
T 2ra8_A 238 ---DMN--------------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES--------DILPQLETMDI 286 (362)
T ss_dssp ---CGG--------------------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC--------SSGGGCSEEEC
T ss_pred ---hHH--------------------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC--------ccCCCCCEEEC
Confidence 000 001111 235778888887777764333222111 24677888888
Q ss_pred CCCcCccc----CCccccCCCCCcEEEcCCCCCCCcccccccC-CCCCCEEeCCCCc
Q 046908 363 SSNELSGE----IPREIGQLQNIRALNLSNNFLSGAIPESFSN-LKMTESLDLSHNR 414 (551)
Q Consensus 363 s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 414 (551)
+.|.+.+. ++..+..+++|+.|++++|.+++..-..+.. + ...+++++++
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 88887753 2333456788888888888877543333332 2 3568888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-09 Score=103.14 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred hhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccc--cccCCCceEEecC--Ccccc
Q 046908 259 ILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQI--NELSNLHVLLLRG--NSLQG 334 (551)
Q Consensus 259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~ 334 (551)
+...+..+++|+.|++++|.-....+ +..++|++|++..|.++. .....+ ..+|+|+.|+|+. |...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCCh------HHHHHHHHccCCCCcEEEEecccccccc
Confidence 33445666777777776662111111 246677777777665541 111122 2467777777653 11111
Q ss_pred cC-ChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccc---cCCCCCcEEEcCCCCCCCc----ccccccCCCCCC
Q 046908 335 HI-PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREI---GQLQNIRALNLSNNFLSGA----IPESFSNLKMTE 406 (551)
Q Consensus 335 ~~-p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 406 (551)
.. ...+..... -..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+
T Consensus 236 ~~~~~~l~~~l~-----~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 236 DGDMNVFRPLFS-----KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp CSCGGGTGGGSC-----TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred chhHHHHHHHHh-----cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 10 111110000 0235666777776666654322222 2355666666666666542 122234456666
Q ss_pred EEeCCCCcCc
Q 046908 407 SLDLSHNRLS 416 (551)
Q Consensus 407 ~L~l~~n~l~ 416 (551)
.|++++|.++
T Consensus 311 ~L~L~~n~i~ 320 (362)
T 2ra8_A 311 FINMKYNYLS 320 (362)
T ss_dssp EEECCSBBCC
T ss_pred EEECCCCcCC
Confidence 6666666655
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-08 Score=89.36 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=28.9
Q ss_pred cccCceEecCCCcCccc----CCccccCCCCCcEEEc--CCCCCCCc----ccccccCCCCCCEEeCCCCcC
Q 046908 354 LKYMAGLDLSSNELSGE----IPREIGQLQNIRALNL--SNNFLSGA----IPESFSNLKMTESLDLSHNRL 415 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 415 (551)
.+.|++|+|++|.+.+. +...+...++|++|+| ++|.|... +...+...+.|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34445555555544432 2333444455555555 45555432 122333445555555555554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-08 Score=87.53 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=18.9
Q ss_pred hCCCCCCEEECcCC-ccccc----CCcccCCCCCCCEEeccccccc
Q 046908 211 SGCVALDLFDLSNN-NFFGQ----IFPKYMNLTHLHWLYLDNNHFS 251 (551)
Q Consensus 211 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 251 (551)
...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34455555555555 54321 1222334444555555555443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.40 E-value=8.8e-08 Score=88.52 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=48.1
Q ss_pred hccccCceEecCCCcCcc--cCCccccCCCCCcEEEcCCCCCCCcc-cccccCCCCCCEEeCCCCcCcccCCC-------
Q 046908 352 SNLKYMAGLDLSSNELSG--EIPREIGQLQNIRALNLSNNFLSGAI-PESFSNLKMTESLDLSHNRLSGHIPP------- 421 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~------- 421 (551)
.+++.|+.|+|++|.+++ .++..+..+++|+.|+|++|+|++.. .+.+..+ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456677777777777765 33455566777777777777776541 1223333 677777777777654442
Q ss_pred CCCCCCCCCeEE
Q 046908 422 QLTGLNFLSNFN 433 (551)
Q Consensus 422 ~~~~l~~L~~l~ 433 (551)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-07 Score=84.42 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=28.9
Q ss_pred CCCCCCEEEcccCcCcc--ccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCccc
Q 046908 29 NLTHLKVLDISNNQLSG--KVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNM 93 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 93 (551)
++++|+.|+|++|.|++ .+++.+..+++|++|+|++|.+.+.-....+..+ +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 34455555555555543 2233444455555555555555433222222223 4555555555443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.12 E-value=8.9e-07 Score=75.77 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCC----CCCCEEEcccCcccccccCCCccCC
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANH----SKLEVLLISSGSNMLQVKTETWHPT 104 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l----~~L~~L~l~~n~~~~~~~~~~~~~l 104 (551)
.-.+|+.||++++.|++..-..+..+++|++|+|+++..........+..+ ++|++|++++|..++......+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 335688888888888877777788888899998888863323223345543 4688999988875554333356778
Q ss_pred CCccEEEccCCCC
Q 046908 105 SQLKVLKLSDCHL 117 (551)
Q Consensus 105 ~~L~~L~l~~n~l 117 (551)
++|++|++++|.-
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 8999999999863
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-06 Score=74.16 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=59.1
Q ss_pred chhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCC----CCccEEEccCCC-CCCC-c
Q 046908 48 PSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPT----SQLKVLKLSDCH-LHVI-P 121 (551)
Q Consensus 48 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l----~~L~~L~l~~n~-l~~l-~ 121 (551)
|.....-.+|++||++++.++. .....+..+++|++|+|++|..+....-..+..+ ++|++|++++|. ++.- -
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CcccCCCceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 4333333578888888887653 2334467888888888888865444322234443 368888888885 5431 1
Q ss_pred hhhhCCCCCCEEEccCCc
Q 046908 122 SFLLQHYHLIFLDLSNNK 139 (551)
Q Consensus 122 ~~~~~~~~L~~L~Ls~n~ 139 (551)
..+..+++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 346678888888888885
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=8.8e-05 Score=60.42 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred cEEEcCCCCCC-CcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 382 RALNLSNNFLS-GAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 382 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+.+.+..|..++.|++|+|++|++.+.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 47888888887 2444433 2468999999999997777788899999999999888877664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=4.1e-05 Score=66.74 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=6.6
Q ss_pred CCCceEEecCCccc
Q 046908 320 SNLHVLLLRGNSLQ 333 (551)
Q Consensus 320 ~~L~~L~l~~n~l~ 333 (551)
+.|+.|+|++|.+.
T Consensus 70 ~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 70 KHIEKFSLANTAIS 83 (197)
T ss_dssp SCCCEEECTTSCCB
T ss_pred CCcCEEEccCCCCC
Confidence 44444444444444
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=5.3e-05 Score=66.06 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-----cccccceeeccccc---cccC
Q 046908 234 YMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-----NLSSVKHLYLQKNA---ITGD 305 (551)
Q Consensus 234 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~L~~n~---l~~~ 305 (551)
+..-+.|+.|+|++|.+...... .+...+..-+.|+.|+|++|.|.......+ .-..|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~- 143 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN- 143 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH-
T ss_pred HhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH-
Confidence 34445555555555555432111 344445555666666666666654332222 22345555555432 111
Q ss_pred ccceeccCccccccCCCceEEecCCcc
Q 046908 306 NKFFGRIPYQINELSNLHVLLLRGNSL 332 (551)
Q Consensus 306 ~~~~~~~~~~~~~l~~L~~L~l~~n~l 332 (551)
.....+...+..-+.|+.|+++.|.+
T Consensus 144 -~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 -QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp -HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred -HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 00001223344456666666665544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00062 Score=55.34 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=35.3
Q ss_pred ceEecCCCcCc-ccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCc
Q 046908 358 AGLDLSSNELS-GEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLS 416 (551)
Q Consensus 358 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 416 (551)
..++.+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666665 23443322 35777777777777666666677777777777777654
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=80.44 E-value=2.3 Score=32.02 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCC
Q 046908 16 SNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSI 65 (551)
Q Consensus 16 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 65 (551)
+..++.+-..+|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666778888888888888876 44477778888888888876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 551 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 8e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 7e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.004 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 86.2 bits (212), Expect = 8e-19
Identities = 69/433 (15%), Positives = 131/433 (30%), Gaps = 69/433 (15%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L + L N + Q +L + L + K + L +L ++ +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ +L ++L + +++ + I
Sbjct: 76 NQLTDITPLKNL----------------------------TKLVDILMNNNQIADITPLA 107
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
+N + N +L N + L L + + G+
Sbjct: 108 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD 167
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLY 244
+ + L + + + +++ L+ +NN LT+L L
Sbjct: 168 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 225
Query: 245 LDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITG 304
L+ N + L+ L +L +D+ N +S L L+ + L L N I+
Sbjct: 226 LNGNQLKD-------IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISN 277
Query: 305 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS 364
+ G L EL SNLK + L L
Sbjct: 278 ISPLAG---------------------LTALTNLELNENQLEDISPISNLKNLTYLTLYF 316
Query: 365 NELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424
N +S P + L ++ L +NN +S S +NL L HN++S P L
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 370
Query: 425 GLNFLSNFNVSYN 437
L ++ ++
Sbjct: 371 NLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.2 bits (173), Expect = 7e-14
Identities = 66/364 (18%), Positives = 122/364 (33%), Gaps = 41/364 (11%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
G+ L NL +++ S+N P L NLT L + ++NNQ++ P + L
Sbjct: 61 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118
Query: 62 RFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
I + + N +L IS S + + + +L +
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
+ + + + I +NN + P + L L + N +
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD-- 233
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLH 241
++ + L DL+ N S P +SG L L N LT L
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTALT 288
Query: 242 WLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNA 301
L L+ N S LK+L + ++ N++S + +L+ ++ L+ N
Sbjct: 289 NLELNENQLEDISPI-------SNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNK 340
Query: 302 ITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLD 361
++ + L+N++ L N + P +NL + L
Sbjct: 341 VSD--------VSSLANLTNINWLSAGHNQISDLTP-------------LANLTRITQLG 379
Query: 362 LSSN 365
L+
Sbjct: 380 LNDQ 383
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 71.3 bits (173), Expect = 4e-14
Identities = 66/317 (20%), Positives = 99/317 (31%), Gaps = 49/317 (15%)
Query: 159 NMGIVLQKLIYLDMPKNIFEGD--IPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVAL 216
+ ++ LD+ IP S+ + L + N P ++ L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 217 DLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFE 276
+++ N G I + L L N SG + +S L +L I
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-----SISSLPNLVGITFDG 158
Query: 277 NSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 336
N +SG++ S+ L + N+ G+IP L+ V L R
Sbjct: 159 NRISGAIPDSYG----SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 337 PNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIP 396
+ N
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAF-------------------------------------DL 237
Query: 397 ESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESS 456
K LDL +NR+ G +P LT L FL + NVS+NNL G P FD S+
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
Query: 457 YTGNHELCGSLIRKKCS 473
Y N LCGS + C+
Sbjct: 298 YANNKCLCGSPL-PACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 44/263 (16%), Positives = 85/263 (32%), Gaps = 17/263 (6%)
Query: 28 NNLTHLKVLDISNNQLSGK--VPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVL 85
+ LD+S L +PS+L NL L +L IN ++A ++L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 86 LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFP 145
I+ + + + + + + +P + +L+ + N++ G P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 146 ---------ICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDL 196
S +L + L + + + S+ + Q +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 197 SRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDD 256
S V L+ DL NN +G + L LH L + N+ G+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--- 283
Query: 257 ANILVQLSQLKSLELIDIFENSL 279
+ Q L+ ++ N
Sbjct: 284 ---IPQGGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 43/258 (16%), Positives = 69/258 (26%), Gaps = 14/258 (5%)
Query: 5 NLKNLFELDLSSNNFEG--HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ LDLS N IP L NL +L L I + +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+ + L+ L L S + + + + + + IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 123 FLLQHYHL----------IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
L + + N + + ++ K
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 173 PKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFP 232
+G K L DL N G LPQ + + L ++S NN G+I P
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEI-P 285
Query: 233 KYMNLTHLHWLYLDNNHF 250
+ NL NN
Sbjct: 286 QGGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.1 bits (131), Expect = 6e-09
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
KNL LDL +N G +PQ L L L L++S N L G++P NL +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 12/234 (5%)
Query: 3 ICNLKNLFELDLSSN-NFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ NL L L + N G IP + LT L L I++ +SG +P L+ + +L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 62 RFSINF---------QGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKL 112
+ + +++ + S + ++ T ++L
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 113 SDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDM 172
+ L L N + + + L LD+
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251
Query: 173 PKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
N G +P + ++K L+ ++S NN GE+PQ D+ +NN
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL 43
G+ LK L L++S NN G IPQ NL V +NN+
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.9 bits (167), Expect = 2e-13
Identities = 50/323 (15%), Positives = 95/323 (29%), Gaps = 51/323 (15%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ S E +P+ L +LD+ NN+++ NL +L L +
Sbjct: 14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
+ P +L+ L LS L +P + +
Sbjct: 71 SP--------------------------GAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
L + N++ N + ++ L G + MK+
Sbjct: 105 --LRVHENEITKVRKSVFNG-----------LNQMIVVELGTNPLKSSGIENGAFQGMKK 151
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHF 250
L ++ N + +PQ + +L L N L +L L L N
Sbjct: 152 LSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 251 SGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFG 310
S + + L + + N L + ++ +YL N I+
Sbjct: 208 SAVDNGSLA-----NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262
Query: 311 RIPYQINELSNLHVLLLRGNSLQ 333
P + ++ + L N +Q
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 5e-13
Identities = 48/290 (16%), Positives = 90/290 (31%), Gaps = 21/290 (7%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
+ LDL +N NL +L L + NN++S P L LE L
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
+ L + + +V+ ++ +Q+ V++L L
Sbjct: 91 LKELPEKMPKTLQE-----LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
Query: 127 HYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIG 186
+ L ++ N +P+ + L L + N S+
Sbjct: 146 FQGMKKLSYIR---------IADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLK 192
Query: 187 EMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246
+ L LS N+ S ++ L L+NN + ++ +YL
Sbjct: 193 GLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLH 250
Query: 247 NNHFSG-KMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHL 295
NN+ S +D ++ S + +F N + + V
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.8 bits (146), Expect = 1e-10
Identities = 61/317 (19%), Positives = 106/317 (33%), Gaps = 48/317 (15%)
Query: 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165
L+V++ SD L +P L LDL NNK+ + L+
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITE-------------IKDGDFKNLK 55
Query: 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNN 225
L L + N P + + +L LS+N ELP+ + L + +
Sbjct: 56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITK 114
Query: 226 FFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVS 285
+F +N + L + SG + A +K L I I + +++ +
Sbjct: 115 VRKSVF-NGLNQMIVVELGTNPLKSSGIENGA-----FQGMKKLSYIRIADTNITT--IP 166
Query: 286 SFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345
S+ L+L N IT + L+NL L L NS+ L +
Sbjct: 167 QGLPPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220
Query: 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF------ 399
+N K + ++P + + I+ + L NN +S F
Sbjct: 221 LRELHLNNNKLV------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268
Query: 400 SNLKMTESLDLSHNRLS 416
+ + L N +
Sbjct: 269 TKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.7 bits (143), Expect = 2e-10
Identities = 46/276 (16%), Positives = 82/276 (29%), Gaps = 28/276 (10%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
NLKNL L L +N P L L+ L +S NQL L L +
Sbjct: 51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE- 109
Query: 63 FSINFQGTISINSLANHSKLEVL-LISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP 121
N + + +++ V+ L ++ ++ + +L ++++D ++ IP
Sbjct: 110 ---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166
Query: 122 SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDI 181
L L L L NK+ L L L + N
Sbjct: 167 QGLPP--SLTELHLDGNKITKVDAASLKG-------------LNNLAKLGLSFNSISAVD 211
Query: 182 PYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFG------QIFPKYM 235
S+ L L+ N + + + L NNN
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 236 NLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLEL 271
+ L +N + + +++L
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.8 bits (133), Expect = 4e-09
Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 24/212 (11%)
Query: 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325
L+D+ N ++ F NL ++ L L +NK P L L L
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI------NNKISKISPGAFAPLVKLERL 84
Query: 326 LLRGNSLQGHIPNELCHVSRFLHRF-------------YSNLKYMAGLDLSSNELSGEIP 372
L N L+ +P ++ + L N + L + + SG
Sbjct: 85 YLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143
Query: 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNF 432
++ + + +++ ++ +L L L N+++ L GLN L+
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKL 200
Query: 433 NVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464
+S+N++S + N++L
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 8e-09
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 27/251 (10%)
Query: 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKM 254
DL N + + L L NN + L L LYL N
Sbjct: 37 DLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95
Query: 255 DDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPY 314
+ +Q ++ E+ + ++ + L+ + + L N K G
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFN-------GLNQMIVVELGTN----PLKSSGIENG 144
Query: 315 QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPRE 374
+ L + + ++ IP L +L L L N+++
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGLP----------PSLTE---LHLDGNKITKVDAAS 190
Query: 375 IGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNV 434
+ L N+ L LS N +S S +N L L++N+L +P L ++ +
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 249
Query: 435 SYNNLSGPTPD 445
NN+S +
Sbjct: 250 HNNNISAIGSN 260
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.1 bits (126), Expect = 3e-08
Identities = 57/300 (19%), Positives = 99/300 (33%), Gaps = 37/300 (12%)
Query: 147 CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
CS+ K+P+++ LD+ N +K L+ L N S P
Sbjct: 17 CSDLGLE-KVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 72
Query: 207 QPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
+ V L+ LS N L L + ++ L+Q+
Sbjct: 73 GAF-APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-----RKSVFNGLNQM 126
Query: 267 KSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLL 326
+EL S + + + ++ + IT IP + +L L
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------TIPQGL--PPSLTELH 177
Query: 327 LRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNL 386
L GN + L L +A L LS N +S + ++R L+L
Sbjct: 178 LDGNKITKVDAASLK-----------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226
Query: 387 SNNFLSGAIPESFSNLKMTESLDLSHNRLSG------HIPPQLTGLNFLSNFNVSYNNLS 440
+NN L +P ++ K + + L +N +S P T S ++ N +
Sbjct: 227 NNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.1 bits (126), Expect = 3e-08
Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 15/231 (6%)
Query: 238 THLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLY 296
L L NN + D LK+L + + N +S +F L ++ LY
Sbjct: 31 PDTALLDLQNNKITEIKDGD-----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85
Query: 297 LQKNAITGDNKFFGRIPYQINELSNLHVLLLRG------NSLQGHIPNELCHVSRFLHRF 350
L KN + + + ++ N + + + + S +
Sbjct: 86 LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
+ +K ++ + ++ ++ IP+ G ++ L+L N ++ S L L L
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNH 461
S N +S L L +++ N L N+
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 3/144 (2%)
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGH 418
+ S L ++P+++ + L+L NN ++ F NLK +L L +N++S
Sbjct: 14 VVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIRKKCSSALKP 478
P L L +S N L + ++ S+ +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 479 PATPTEEAGEEEDDSMIDMVALKW 502
T ++ E+ + M L +
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSY 154
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYL 60
N + EL + G + L + I++ ++ +LT L +L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-HL 178
Query: 61 DRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVI 120
D I S+ L N +KL + S +++ V + T L+ L L++ L +
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGL----SFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234
Query: 121 PSFLLQHYHLIFLDLSNNK 139
P L H ++ + L NN
Sbjct: 235 PGGLADHKYIQVVYLHNNN 253
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (161), Expect = 2e-12
Identities = 61/451 (13%), Positives = 132/451 (29%), Gaps = 36/451 (7%)
Query: 8 NLFELDLSSNNF-EGHIPQCLNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLDR 62
++ LD+ + + L L +V+ + + L+ + S L +L L+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN- 61
Query: 63 FSINFQGTISINSLA-----NHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHL 117
N G + ++ + K++ L + + L L+
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121
Query: 118 HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMP---- 173
+++ LQ LD CS + + + ++ L +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181
Query: 174 ----KNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQ 229
+ + S +++ L ++ + + IV+ +L L +N
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241
Query: 230 -----IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
+ L L++ + K V ++ EL
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301
Query: 285 SSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344
L+ + + + + L+ LL S + +
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361
Query: 345 RFLHRFYSNLKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFLSGAIPESFS 400
+ L + S L+ L L+ ++S + + ++R L+LSNN L A
Sbjct: 362 QGLGQPGSVLRV---LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 401 -----NLKMTESLDLSHNRLSGHIPPQLTGL 426
+ E L L S + +L L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 1e-06
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 360 LDLSSNELSGEIPREI-GQLQNIRALNLSNNFLSG----AIPESFSNLKMTESLDLSHNR 414
LD+ ELS E+ LQ + + L + L+ I + L+L N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 415 LSGHIPPQLTGLNFLSNFNVSYNNLSG 441
L + + + +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCL-----NNLTHLKVLDISNNQLSGKVPSTLTNL 54
+ +L ELDLS+N L L+ L + + S ++ L L
Sbjct: 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 8e-04
Identities = 42/412 (10%), Positives = 95/412 (23%), Gaps = 21/412 (5%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCL-----NNLTHLKVLDISNNQLSGKVPSTLTNLTS 56
+ L EL+L SN C+ ++ L + N L+G L++
Sbjct: 50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109
Query: 57 LEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCH 116
+ + L + + + + + L
Sbjct: 110 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 169
Query: 117 LHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNI 176
+ + + + + + + I ++
Sbjct: 170 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SL 228
Query: 177 FEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMN 236
E + + + + S L + C
Sbjct: 229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 288
Query: 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLY 296
+ L + + S S S+++ +
Sbjct: 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348
Query: 297 LQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKY 356
+ G + S L VL L + + L H +L+
Sbjct: 349 NNRLEDAGVRELC---QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH----SLRE 401
Query: 357 MAGLDLSSNELSGEIPREIGQ-----LQNIRALNLSNNFLSGAIPESFSNLK 403
LDLS+N L ++ + + L L + + S + + L+
Sbjct: 402 ---LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 31/296 (10%)
Query: 147 CSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELP 206
C +P + Q + + N S + L + L N +
Sbjct: 18 CPQQGLQ-AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 207 QPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266
+ L N + L LH L+LD L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-----GL 128
Query: 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325
+L+ + + +N+L +F +L ++ HL+L N+ L +L L
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLH------GNRISSVPERAFRGLHSLDRL 182
Query: 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALN 385
LL N + P+ L + L L +N LS + L+ ++ L
Sbjct: 183 LLHQNRVAHVHPHAFRD-----------LGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 386 LSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441
L++N + + S + + +P +L G + ++ N+L G
Sbjct: 232 LNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 51/314 (16%), Positives = 90/314 (28%), Gaps = 42/314 (13%)
Query: 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164
L +P + + L N++ +P
Sbjct: 11 EPKVTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISH-------------VPAASFRAC 55
Query: 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
+ L L + N+ + + L DLS N + G L L
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
+ L L +LYL +N DD L +L + + N +S
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRISSVPE 170
Query: 285 SSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHV 343
+F L S+ L L N+ P+ +L L N L +
Sbjct: 171 RAFRGLHSLDRLLLH------QNRVAHVHPHAFRDLGRLMT--------LYLFANNLSAL 216
Query: 344 SRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403
L+Y L L+ N + R ++ S++ + ++P+ +
Sbjct: 217 PTEALAPLRALQY---LRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272
Query: 404 MTESLDLSHNRLSG 417
+ L+ N L G
Sbjct: 273 L---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 4e-09
Identities = 46/276 (16%), Positives = 86/276 (31%), Gaps = 25/276 (9%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSIN 66
+ L N +L +L + +N L+ + T L LE LD
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 67 FQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLH-VIPSFLL 125
++ + +L L + ++ + + L+ L L D L +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 126 QHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185
+L L L N++ +P L L L + +N P++
Sbjct: 151 DLGNLTHLFLHGNRISS-------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245
++ L L NN S LP ++ AL L++N + + + L
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRG 255
Query: 246 DNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281
++ +L +L + N L G
Sbjct: 256 SSSEVPC--------SLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 18/201 (8%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
L L L L + P L L+ L + +N L T +L +L +L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF- 159
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
N ++ + L+ LL+ + + ++ +
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L L +L L++N V + + L + +P
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCRARP--------------LWAWLQKFRGSSSEVPCSLP 265
Query: 183 YSIGEMKELYMQDLSRNNFSG 203
+ ++ L+ N+ G
Sbjct: 266 ---QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 5e-04
Identities = 44/247 (17%), Positives = 74/247 (29%), Gaps = 20/247 (8%)
Query: 220 DLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
L N + +L L+L +N + A + L + L +
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 280 SGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
+ L L+L P L+ L L L+ N+LQ +
Sbjct: 98 PATFHGLGRL---HTLHLD------RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399
+ H L L N +S R L ++ L L N ++ P +F
Sbjct: 149 FRDLGNLTH-----------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTG 459
+L +L L N LS L L L ++ N + +A + +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS 257
Query: 460 NHELCGS 466
+ C
Sbjct: 258 SEVPCSL 264
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 22/224 (9%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDR 62
+ + + E++ N +P L +L +S N L +TL T L L+
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+L L++ S L +T + +L+ L +
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
N LP + KL L + N
Sbjct: 123 LGELQEL-----------------YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNF 226
+ ++ L L N+ +P+ G L L N +
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 6/178 (3%)
Query: 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFG----RIPYQINELSN 321
K ++ + EN L +++ + + L L + +T +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNI 381
LL + + ++ L + L L NEL P + +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 382 RALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNL 439
L+L+NN L+ + L+ ++L L N L IP G + L + N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLS 411
S + ++ L+ +P ++ + + L+LS N L + L+L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 412 HNR 414
Sbjct: 64 RAE 66
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 14/181 (7%)
Query: 107 LKVLKLSDCHLH-VIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQ 165
+L LS+ L+ + L+ + L L+L ++ + + +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 166 KLIYLDMPKNIFEGDIPYSIGE-------MKELYMQDLSRNNFSGELPQPIVSGCVALDL 218
L+ +P + + + N LP +++ L+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 219 FDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENS 278
L+NNN L +L L L N I L + N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY------TIPKGFFGSHLLPFAFLHGNP 206
Query: 279 L 279
Sbjct: 207 W 207
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 48/337 (14%), Positives = 87/337 (25%), Gaps = 36/337 (10%)
Query: 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL 164
Q L+L++ L +P HL L S N + P + + + N L
Sbjct: 38 RQAHELELNNLGLSSLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93
Query: 165 QKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNN 224
L L + + +++ + +N S + + + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 225 NFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLV 284
++ + L ++ +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV------------------------A 189
Query: 285 SSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344
+ L + L T S + + +
Sbjct: 190 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 249
Query: 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKM 404
+S L + N S EI ++ LN+SNN L +P L
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL-- 306
Query: 405 TESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSG 441
E L S N L+ +P L L +V YN L
Sbjct: 307 -ERLIASFNHLA-EVPELPQNLKQL---HVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 49/344 (14%), Positives = 100/344 (29%), Gaps = 34/344 (9%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRF 63
C + EL+L++ +P+ HL+ L S N L+ ++P +L
Sbjct: 35 CLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLK-------- 81
Query: 64 SINFQGTISINSLANHSKLEVLL-ISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
+ N+L S L LL SN K +S LK++ + + L +P
Sbjct: 82 ----SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
+ + ++ + + L + +
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197
Query: 183 YSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHW 242
+ + L N P + + L++ Q ++
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257
Query: 243 LYLDNNHFSGKMDDANIL--VQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKN 300
+ ++ ++ SLE +++ N L L + ++ L N
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL--PPRLERLIASFN 314
Query: 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344
+ +P NL L + N L+ P+ V
Sbjct: 315 HLA-------EVP---ELPQNLKQLHVEYNPLRE-FPDIPESVE 347
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSL 57
+L EL++S+N +P L L S N L+ +VP NL L
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL 329
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.5 bits (114), Expect = 6e-07
Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 9/219 (4%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFS 64
L N ++ +N + Q +L + L ++ + L +L L+
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 65 INFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFL 124
+ +L ++LE+ + ++ L + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 125 LQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184
+ + L + + + A L KL L N P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSN 223
+ + L L N S P ++ L + L+N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ NL L L N P L +L +L + + NNQ+S P L N ++L +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 2 GICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISN 40
+ +L NL E+ L +N P L N ++L ++ ++N
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 22/216 (10%), Positives = 54/216 (25%), Gaps = 15/216 (6%)
Query: 220 DLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSL 279
+N + +L + L + + + L +L +++ +N +
Sbjct: 25 AAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT-------IEGVQYLNNLIGLELKDNQI 75
Query: 280 SGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339
+ + + ++ S
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQV 133
Query: 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESF 399
L + LS + L + L +N +S P
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 400 SNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVS 435
++L + L +N++S P L + L ++
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 25/280 (8%)
Query: 148 SNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQ 207
+ N + ++ Q +I P++ + + + +M DLS +
Sbjct: 8 TGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM-DLSNSVIEVSTLH 64
Query: 208 PIVSGCVALDLFDLSNNNFFGQI---FPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264
I+S C L L I K NL L+ + +L
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124
Query: 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHV 324
+L D E + ++ + +L + + +
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL------- 177
Query: 325 LLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSS-NELSGEIPREIGQLQNIRA 383
++ + + + L Y+ L LS ++ E E+G++ ++
Sbjct: 178 --------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229
Query: 384 LNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423
L + G + L L ++ + + P +
Sbjct: 230 LQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 35/247 (14%), Positives = 78/247 (31%), Gaps = 10/247 (4%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK-VPSTLTNLTSLEYLDRFSI 65
+ + + + + + + ++ +D+SN+ + + L+ + L+ L
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLS-LEG 80
Query: 66 NFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLL 125
+N+LA +S L L +S S + +T + +L + +L F
Sbjct: 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS----RLDELNLSWCFDFTE 136
Query: 126 QHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185
+H + +S N N L + + + + D
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196
Query: 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245
++ L LSR + L + G + L HL +
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I 253
Query: 246 DNNHFSG 252
+ +HF+
Sbjct: 254 NCSHFTT 260
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 360 LDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG-H 418
LDL+ L ++ + Q + A +F+ + E FS ++ + +DLS++ +
Sbjct: 5 LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEVST 62
Query: 419 IPPQLTGLNFLSNFNVSYNNLSGPTP 444
+ L+ + L N ++ LS P
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 38/271 (14%), Positives = 82/271 (30%), Gaps = 31/271 (11%)
Query: 195 DLSRNNFSGELPQPIVS-GCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGK 253
DL+ N ++ ++S G +A +F Q ++ + + + L N+
Sbjct: 6 DLTGKNLHPDVTGRLLSQGVIAFRC----PRSFMDQPLAEHFSPFRVQHMDLSNSVIE-- 59
Query: 254 MDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHL----------------- 295
+ + LSQ L+ + + LS +V++ S++ L
Sbjct: 60 --VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117
Query: 296 -YLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNL 354
+ + F + + +L G+ N S
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN--LQKSDLSTLVRRCP 175
Query: 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSN-NFLSGAIPESFSNLKMTESLDLSHN 413
+ S L + +E QL ++ L+LS + + ++L +
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
Query: 414 RLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444
G + L L + ++ PT
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 30/220 (13%), Positives = 61/220 (27%), Gaps = 8/220 (3%)
Query: 1 LGICNLKNLFELDLSSNNFEG-HIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEY 59
+ + +DLS++ E + L+ + L+ L + +LS + +TL ++L
Sbjct: 40 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99
Query: 60 LDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHV 119
L N G + A + L N+ T
Sbjct: 100 L-----NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154
Query: 120 IPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPK-NIFE 178
+ + L S++ L L +L + +
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214
Query: 179 GDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDL 218
+ +GE+ L + G L + L +
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQL-LKEALPHLQI 253
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.003
Identities = 40/270 (14%), Positives = 95/270 (35%), Gaps = 15/270 (5%)
Query: 36 LDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQ 95
LD++ L V L + + + R +F + +++ + +S+ +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAF--RCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 61
Query: 96 VKTETWHPTSQLKVLKLSDCHL-HVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAG 154
S+L+ L L L I + L ++ +L+ L+LS F + + +
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 155 KLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCV 214
+L D + + + + + +L + +N +L +
Sbjct: 122 RLDELNLS-----WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176
Query: 215 ALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDI 274
+ L + F ++ L +L L L + L++L ++ +L+ + +
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY----DIIPETLLELGEIPTLKTLQV 232
Query: 275 FENSLSGSLVSSFNLSSVKHLYLQKNAITG 304
F G+L ++ HL + + T
Sbjct: 233 FGIVPDGTLQLL--KEALPHLQINCSHFTT 260
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 35/319 (10%), Positives = 88/319 (27%), Gaps = 15/319 (4%)
Query: 7 KNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLDR 62
K+L +++ + + + L +K + +S N + + + + + LE +
Sbjct: 8 KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE- 65
Query: 63 FSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS 122
FS F G + L L+ ++ + + L +
Sbjct: 66 FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125
Query: 123 FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIP 182
L + L + + R++ +L M +
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185
Query: 183 YSIGEMKELYMQDLSRNN--FSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHL 240
+ +K + E V + + + + +L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245
Query: 241 HWLYLDNNHFSGKMDDANI-LVQLSQLKSLELIDIFENSLSGSLVSSF------NLSSVK 293
L L++ S + A + + L+ + + N + V + + +
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305
Query: 294 HLYLQKNAITGDNKFFGRI 312
L L N + ++ I
Sbjct: 306 FLELNGNRFSEEDDVVDEI 324
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 8e-04
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 1 LGICNLKNLFELDLSSNNFEGHIPQCL-----NNLTHLKVLDISNNQLS--GKVPSTLTN 53
L L L N E + L + L L+++ N+ S V +
Sbjct: 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326
Query: 54 LTSLEYLDRFS 64
+ S
Sbjct: 327 VFSTRGRGELD 337
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 4e-05
Identities = 38/238 (15%), Positives = 69/238 (28%), Gaps = 14/238 (5%)
Query: 11 ELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGT 70
+ IP L + L +L + LE ++ +
Sbjct: 12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 71 ISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHL 130
I + +N KL + I +N+L + E + L+ L +S+ + +P H
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 131 IFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKE 190
I N N + + + + L + KN + + +
Sbjct: 129 KV----------LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178
Query: 191 LYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248
+ NN ELP + G + D+S NL L N
Sbjct: 179 DELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLD 61
+ +NN E + + +LDIS ++ L NL L
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (91), Expect = 4e-04
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 3 ICNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQ 42
LD+S L NL L+ N +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 5e-04
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 359 GLDLSSNELSGEIPREIGQLQNIRALNLS-NNFLSGAIPESFSNLKMTESLDLSHNRLSG 417
GL + + + + +N+ L + L L +L + + L
Sbjct: 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 418 HIPPQLTGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIR 469
P LS N+S+N L + Q + E +GN C +R
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 12 LDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTI 71
L L+ + + L L + LD+S+N+L P+ L +L L+ +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56
Query: 72 SINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQ 126
+++ +AN +L+ LL+ + + +L +L L L +
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.001
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 34 KVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNM 93
+VL +++ L+ V L L + +LD + + L L + S+
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53
Query: 94 LQVKTETWHPTSQLKVLKLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVG 142
+ +L+ L L + L L+ L+ L+L N +
Sbjct: 54 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.8 bits (89), Expect = 7e-04
Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 14/208 (6%)
Query: 228 GQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF 287
QIF L + V ++L S++ I + + S+
Sbjct: 15 KQIFSDD-AFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIK-SVQGIQ 65
Query: 288 NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFL 347
L +V L+L N +T + + + + + L +
Sbjct: 66 YLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 348 HRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407
+ L + +L + L+L +N +S +P + L ++
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182
Query: 408 LDLSHNRLSGHIPPQLTGLNFLSNFNVS 435
L LS N +S L GL L +
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELF 208
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQL 43
N ELDL I L +D S+N++
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 367 LSGEIPREIGQLQN---IRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL 423
L+ E+ + Q N R L+L + I + L +++D S N +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGF 59
Query: 424 TGLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHEL 463
L L V+ N + +Q N+ L
Sbjct: 60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.004
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 351 YSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDL 410
Y+N LDL ++ I L A++ S+N + + F L+ ++L +
Sbjct: 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLV 70
Query: 411 SHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440
++NR+ L L+ ++ N+L
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLV 100
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Query: 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSG--EIPREIG 376
L L + N ++ L N+ + L+LS+N L ++ +
Sbjct: 29 LKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 88
Query: 377 QLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429
+ N++ LNLS N L E L L N LS Q T ++ +
Sbjct: 89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.86 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.82 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.76 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.53 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.48 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.38 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.29 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.26 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.48 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.4 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.96 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.93 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.4 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.12 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.8e-27 Score=236.15 Aligned_cols=341 Identities=22% Similarity=0.246 Sum_probs=175.3
Q ss_pred CCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCccE
Q 046908 30 LTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLKV 109 (551)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 109 (551)
+.+|++|+++++.|+.. +.+..+++|++|++++|.+++.. .+.++++|++|++++|.+... + .+..+++|+.
T Consensus 43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~---~l~~L~~L~~L~L~~n~i~~i-~--~l~~l~~L~~ 114 (384)
T d2omza2 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADI-T--PLANLTNLTG 114 (384)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc---cccCCcccccccccccccccc-c--cccccccccc
Confidence 34445555555544422 22444455555555555444321 144455555555554443221 1 1445556666
Q ss_pred EEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccCC
Q 046908 110 LKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMK 189 (551)
Q Consensus 110 L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 189 (551)
|+++++.+..++. ......+.......+.+.. +.................... ...+....
T Consensus 115 L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 175 (384)
T d2omza2 115 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-------------ISALSGLTSLQQLSFGNQVTD-----LKPLANLT 175 (384)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-------------CGGGTTCTTCSEEEEEESCCC-----CGGGTTCT
T ss_pred ccccccccccccc-ccccccccccccccccccc-------------cccccccccccccccccccch-----hhhhcccc
Confidence 6666666554443 2233444555555444431 111000001111111111111 11222333
Q ss_pred CCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCC
Q 046908 190 ELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL 269 (551)
Q Consensus 190 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L 269 (551)
.........|... .. ..+..+++++.+++++|.+++..+ +..+++|++|++++|.++... .+..+++|
T Consensus 176 ~~~~~~~~~~~~~--~~-~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-------~l~~l~~L 243 (384)
T d2omza2 176 TLERLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-------TLASLTNL 243 (384)
T ss_dssp TCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGGGCTTC
T ss_pred ccccccccccccc--cc-cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-------hhhccccc
Confidence 3334444443332 11 122335556666666665554332 334556666666666554321 25556666
Q ss_pred CEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhH
Q 046908 270 ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHR 349 (551)
Q Consensus 270 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 349 (551)
+.+++++|.+++..+ ...+++|++|++++|.++ .++ .+..++.++.+++++|.+.+ ++ .
T Consensus 244 ~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~-------~~~-~~~~~~~l~~l~~~~n~l~~-~~-~---------- 302 (384)
T d2omza2 244 TDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-------NIS-PLAGLTALTNLELNENQLED-IS-P---------- 302 (384)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-------CCG-GGTTCTTCSEEECCSSCCSC-CG-G----------
T ss_pred chhccccCccCCCCc-ccccccCCEeeccCcccC-------CCC-cccccccccccccccccccc-cc-c----------
Confidence 666666666655432 125566666666666654 222 24556667777777776653 11 1
Q ss_pred hhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCC
Q 046908 350 FYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFL 429 (551)
Q Consensus 350 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 429 (551)
+..+++++.|++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| +.++++|
T Consensus 303 -~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L 375 (384)
T d2omza2 303 -ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRI 375 (384)
T ss_dssp -GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred -cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence 355667777777777776432 36677778888888887774 33 47777888888888888775543 6777788
Q ss_pred CeEECCCC
Q 046908 430 SNFNVSYN 437 (551)
Q Consensus 430 ~~l~l~~N 437 (551)
+.|++++|
T Consensus 376 ~~L~L~~N 383 (384)
T d2omza2 376 TQLGLNDQ 383 (384)
T ss_dssp SEEECCCE
T ss_pred CEeeCCCC
Confidence 88888776
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=5.7e-29 Score=239.70 Aligned_cols=255 Identities=35% Similarity=0.545 Sum_probs=173.6
Q ss_pred CCcEEECcCCccce--eCChhhhhCCCCCCEEECcC-CcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccC
Q 046908 190 ELYMQDLSRNNFSG--ELPQPIVSGCVALDLFDLSN-NNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQL 266 (551)
Q Consensus 190 ~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 266 (551)
+++.|+|+++.+.| .+|..+ ..+++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+.+..+. .+..+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-----~~~~~ 124 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----FLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-----GGGGC
T ss_pred EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccc-----cccch
Confidence 34444444444443 234433 2355555555543 445544555555555555555555555543322 25555
Q ss_pred CCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCC-ceEEecCCcccccCChhhhhhh
Q 046908 267 KSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNL-HVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 267 ~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.+|+.+++++|.+.+..+..+ .++.++++++++|.++ +.+|..+..+..+ +.+++++|++++..|..+.
T Consensus 125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~------~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~--- 195 (313)
T d1ogqa_ 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--- 195 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---
T ss_pred hhhcccccccccccccCchhhccCcccceeeccccccc------ccccccccccccccccccccccccccccccccc---
Confidence 566666666665555555555 5666666666666554 2566666666664 7778888888877776542
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
.+ ....++++++...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..+.
T Consensus 196 --------~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~ 265 (313)
T d1ogqa_ 196 --------NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp --------GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred --------cc-ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHh
Confidence 22 23468888888888888888888899999999998886554 577888999999999999988998899
Q ss_pred CCCCCCeEECCCCccccCCCCCccCCccCCcccCCCCCCCCcccc
Q 046908 425 GLNFLSNFNVSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLIR 469 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~ 469 (551)
.+++|++|+|++|+++|.+|....+..++.+++.+|+.+|+.|+.
T Consensus 266 ~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred CCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC
Confidence 999999999999999988888777888888889999999987653
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=4.2e-27 Score=233.52 Aligned_cols=342 Identities=23% Similarity=0.219 Sum_probs=256.2
Q ss_pred CCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCE
Q 046908 5 NLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEV 84 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (551)
.+.+|++|++++++|+.. +.+..+++|++|+|++|+|++.. .++++++|++|++++|.+.+.. .+..+++|+.
T Consensus 42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~---~l~~l~~L~~ 114 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT---PLANLTNLTG 114 (384)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc---cccccccccc
Confidence 457899999999999853 34788999999999999999553 3999999999999999987543 3889999999
Q ss_pred EEcccCcccccccCCCccCCCCccEEEccCCCCCCCchhhh-CCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhh
Q 046908 85 LLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLL-QHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIV 163 (551)
Q Consensus 85 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~ 163 (551)
|+++++....... ......+.......+.+..+..... ................ . ...
T Consensus 115 L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~ 173 (384)
T d2omza2 115 LTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-----------------P-LAN 173 (384)
T ss_dssp EECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-----------------G-GTT
T ss_pred ccccccccccccc---ccccccccccccccccccccccccccccccccccccccchhh-----------------h-hcc
Confidence 9998876544332 2445577777777777755443221 1111112221111111 1 111
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
.+.........+... ....+..+++++.+++++|.+.+ ++. ...+++|+.|++++|.++.. ..+..+++|+.|
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~-~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 246 (384)
T d2omza2 174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 246 (384)
T ss_dssp CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ccccccccccccccc--cccccccccccceeeccCCccCC-CCc--ccccCCCCEEECCCCCCCCc--chhhcccccchh
Confidence 344555555555543 34567788999999999999984 433 23478999999999998763 467889999999
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCc
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLH 323 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~ 323 (551)
++++|.+++..+ +..+++|++|+++++.+++..+ ...++.++.+++..|.++ . ...+..+++++
T Consensus 247 ~l~~n~l~~~~~-------~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~-------~-~~~~~~~~~l~ 310 (384)
T d2omza2 247 DLANNQISNLAP-------LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLE-------D-ISPISNLKNLT 310 (384)
T ss_dssp ECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCS-------C-CGGGGGCTTCS
T ss_pred ccccCccCCCCc-------ccccccCCEeeccCcccCCCCc-cccccccccccccccccc-------c-ccccchhcccC
Confidence 999999886432 7788999999999999987653 237889999999999886 2 23477789999
Q ss_pred eEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCC
Q 046908 324 VLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403 (551)
Q Consensus 324 ~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 403 (551)
.|++++|++++. +. +..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| +.+++
T Consensus 311 ~L~ls~n~l~~l-~~------------l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~ 373 (384)
T d2omza2 311 YLTLYFNNISDI-SP------------VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLT 373 (384)
T ss_dssp EEECCSSCCSCC-GG------------GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred eEECCCCCCCCC-cc------------cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCC
Confidence 999999999843 21 3678899999999999984 44 68999999999999999997654 88999
Q ss_pred CCCEEeCCCCc
Q 046908 404 MTESLDLSHNR 414 (551)
Q Consensus 404 ~L~~L~l~~n~ 414 (551)
+|+.|++++|.
T Consensus 374 ~L~~L~L~~Na 384 (384)
T d2omza2 374 RITQLGLNDQA 384 (384)
T ss_dssp TCSEEECCCEE
T ss_pred CCCEeeCCCCc
Confidence 99999999983
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=6.3e-28 Score=232.33 Aligned_cols=235 Identities=27% Similarity=0.397 Sum_probs=137.9
Q ss_pred CChhHhhhcCCccEEEccC-CcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCccc
Q 046908 156 LPRNMGIVLQKLIYLDMPK-NIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKY 234 (551)
Q Consensus 156 l~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 234 (551)
+|+.++. +++|++|+|++ |.+.+.+|..++++++|++|++++|++.+..+ ..+..+..|+.+++++|.+....|..+
T Consensus 68 lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~l~l~~N~~~~~~p~~l 145 (313)
T d1ogqa_ 68 IPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp CCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred CChHHhc-Cccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhcccccccccccccCchhh
Confidence 3444432 44555555543 44444555555555555555555555553222 223345555555555555555555555
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCC-CEEECCCCcccccCCCcccccccceeeccccccccCccceeccC
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSL-ELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIP 313 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 313 (551)
..++.++.+++++|.+.+ .+|..+..+.++ +.+++++|++++..+.
T Consensus 146 ~~l~~L~~l~l~~n~l~~-----~ip~~~~~l~~l~~~l~~~~n~l~~~~~~---------------------------- 192 (313)
T d1ogqa_ 146 SSLPNLVGITFDGNRISG-----AIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------------------- 192 (313)
T ss_dssp GGCTTCCEEECCSSCCEE-----ECCGGGGCCCTTCCEEECCSSEEEEECCG----------------------------
T ss_pred ccCcccceeecccccccc-----ccccccccccccccccccccccccccccc----------------------------
Confidence 555555555555555544 222224444443 4455555544443333
Q ss_pred ccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCC
Q 046908 314 YQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSG 393 (551)
Q Consensus 314 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 393 (551)
.+..+. ...++++++...+.+|..+ ..++.++.+++++|.+++.++ .+..+++|+.|++++|++++
T Consensus 193 -~~~~l~-~~~l~l~~~~~~~~~~~~~-----------~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g 258 (313)
T d1ogqa_ 193 -TFANLN-LAFVDLSRNMLEGDASVLF-----------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp -GGGGCC-CSEEECCSSEEEECCGGGC-----------CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred -cccccc-ccccccccccccccccccc-----------ccccccccccccccccccccc-ccccccccccccCccCeecc
Confidence 333332 2345555555555554432 444556666666666664433 56777888888888888888
Q ss_pred cccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccc
Q 046908 394 AIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 440 (551)
.+|+.|.++++|++|+|++|+++|.+|. +..+++|+.+++++|+..
T Consensus 259 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccc
Confidence 8888888888888888888888888874 567788888888888743
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.1e-26 Score=220.75 Aligned_cols=269 Identities=22% Similarity=0.230 Sum_probs=170.0
Q ss_pred CccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCccc
Q 046908 106 QLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSI 185 (551)
Q Consensus 106 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 185 (551)
..+.++-++.+++.+|..+. +++++|+|++|+++ .+|+..+..+++|++|++++|.+....|.+|
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~-------------~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f 75 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-------------EIKDGDFKNLKNLHTLILINNKISKISPGAF 75 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-------------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCC-------------CcChhHhhccccccccccccccccccchhhh
Confidence 45677777777888876553 56888888888777 6666656567788888888888777777777
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.++++|+.|++++|+++ .+|... ...++.|++.+|.+....+..+.....+..++...|...... .....+..
T Consensus 76 ~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~---~~~~~~~~ 148 (305)
T d1xkua_ 76 APLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQG 148 (305)
T ss_dssp TTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGG
T ss_pred hCCCccCEecccCCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccC---CCcccccc
Confidence 78888888888888777 666544 456777777777776666556666666666666665443221 11223555
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|+.+++++|.+....... + ++|+.|++++|...+..+..
T Consensus 149 l~~L~~l~l~~n~l~~l~~~~--~------------------------------~~L~~L~l~~n~~~~~~~~~------ 190 (305)
T d1xkua_ 149 MKKLSYIRIADTNITTIPQGL--P------------------------------PSLTELHLDGNKITKVDAAS------ 190 (305)
T ss_dssp CTTCCEEECCSSCCCSCCSSC--C------------------------------TTCSEEECTTSCCCEECTGG------
T ss_pred ccccCccccccCCccccCccc--C------------------------------CccCEEECCCCcCCCCChhH------
Confidence 666666666666554432221 3 44555555555554333332
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCC--
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQL-- 423 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-- 423 (551)
|.+++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|++|..+++|+.|++++|+|+.+....|
T Consensus 191 -----~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~ 264 (305)
T d1xkua_ 191 -----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264 (305)
T ss_dssp -----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred -----hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence 244555566666666666555666666677777777777766 345566667777777777777664433333
Q ss_pred ----CCCCCCCeEECCCCccc
Q 046908 424 ----TGLNFLSNFNVSYNNLS 440 (551)
Q Consensus 424 ----~~l~~L~~l~l~~N~l~ 440 (551)
..+..|+.+++++|+++
T Consensus 265 ~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 265 PGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SSCCTTSCCCSEEECCSSSSC
T ss_pred cchhcccCCCCEEECCCCcCc
Confidence 33456777777777764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=6.4e-25 Score=210.28 Aligned_cols=268 Identities=20% Similarity=0.246 Sum_probs=197.5
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
.+.++-++..++ .+|..+. +++++|++++|+++ .+|...|.++++|++|++++|.+....+.+|..+++|++|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 344555555555 2343332 45667777777776 6666666667777777777777776666677777777777777
Q ss_pred cccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceE
Q 046908 247 NNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVL 325 (551)
Q Consensus 247 ~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L 325 (551)
+|+++.++. .....+..|++.+|.+.+.....+ ....++.++...|.... ....+..+..+++|+.+
T Consensus 88 ~n~l~~l~~--------~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----~~~~~~~~~~l~~L~~l 155 (305)
T d1xkua_ 88 KNQLKELPE--------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----SGIENGAFQGMKKLSYI 155 (305)
T ss_dssp SSCCSBCCS--------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----GGBCTTGGGGCTTCCEE
T ss_pred CCccCcCcc--------chhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----cCCCccccccccccCcc
Confidence 777764432 123567777777777776655555 55666667766664321 11334567788999999
Q ss_pred EecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCC
Q 046908 326 LLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMT 405 (551)
Q Consensus 326 ~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 405 (551)
++++|.+. .+|.. ..++|+.|++++|..++..+..|.+++.+++|++++|.+++..+..+.++++|
T Consensus 156 ~l~~n~l~-~l~~~-------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L 221 (305)
T d1xkua_ 156 RIADTNIT-TIPQG-------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221 (305)
T ss_dssp ECCSSCCC-SCCSS-------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred ccccCCcc-ccCcc-------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence 99999887 45542 35789999999999998889999999999999999999998888999999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCCC-------CccCCccCCcccCCCCCCCC
Q 046908 406 ESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTPD-------KEQFATFDESSYTGNHELCG 465 (551)
Q Consensus 406 ~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-------~~~~~~~~~~~~~~n~~~c~ 465 (551)
++|+|++|+++ .+|..+..+++|++|++++|+++..... .....++..+++.+||+.+.
T Consensus 222 ~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~ 287 (305)
T d1xkua_ 222 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287 (305)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred eeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence 99999999998 6688999999999999999999876433 12345677888999999864
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-25 Score=211.17 Aligned_cols=244 Identities=21% Similarity=0.232 Sum_probs=161.8
Q ss_pred ECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEEC
Q 046908 195 DLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDI 274 (551)
Q Consensus 195 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l 274 (551)
+.++.+++ ++|..+ .+.+++|+|++|+++...+.+|.++++|++|++++|.+..+.... +..+..++.++.
T Consensus 17 ~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-----~~~~~~~~~l~~ 87 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-----FTGLALLEQLDL 87 (284)
T ss_dssp ECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEEC
T ss_pred EcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc-----cccccccccccc
Confidence 44444444 555443 234566666666665555555666666666666666665544333 555556666554
Q ss_pred C-CCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhh
Q 046908 275 F-ENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYS 352 (551)
Q Consensus 275 ~-~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~ 352 (551)
. .+.++...+..+ ++++|++|++++|.+.. ..+..+..+++|+.+++++|.+++..+.. |.
T Consensus 88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~~~L~~l~l~~N~l~~i~~~~-----------f~ 150 (284)
T d1ozna_ 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQALPDDT-----------FR 150 (284)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------TT
T ss_pred ccccccccccchhhcccccCCEEecCCccccc------ccccccchhcccchhhhccccccccChhH-----------hc
Confidence 3 344555555555 56667777777666541 22334556677888888888777333332 46
Q ss_pred ccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeE
Q 046908 353 NLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNF 432 (551)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 432 (551)
.+++|+.|++++|.+++..+..|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+++
T Consensus 151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L 230 (284)
T d1ozna_ 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (284)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence 67778888888888887777888888999999999999988888889999999999999999988777788888999999
Q ss_pred ECCCCccccCCCCCccCCccCCcccCCCCCCC
Q 046908 433 NVSYNNLSGPTPDKEQFATFDESSYTGNHELC 464 (551)
Q Consensus 433 ~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 464 (551)
++++|++.|.++......+++......+...|
T Consensus 231 ~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C 262 (284)
T d1ozna_ 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262 (284)
T ss_dssp ECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred EecCCCCCCCccchHHHHHHHhCcCCCCceEe
Confidence 99999998877643333334443333333344
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5e-24 Score=201.59 Aligned_cols=225 Identities=19% Similarity=0.231 Sum_probs=147.5
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
..++.++++++ .+|..+. +.+++|+|++|.|+.+.+.+|.++++|++|++++|.+.. ++...+..++.++.+....
T Consensus 14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-ccccccccccccccccccc
Confidence 45677888887 5565554 678999999999997777789999999999999888874 4445667777777777666
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCCCch-hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCcc
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS-FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLI 168 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~ 168 (551)
+.....+++..|..+++|++|++++|.+..++. .+....+|+.
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~------------------------------------ 133 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY------------------------------------ 133 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE------------------------------------
T ss_pred ccccccccchhhcccccCCEEecCCcccccccccccchhcccch------------------------------------
Confidence 655566666666666666666666666644432 3333444444
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccc
Q 046908 169 YLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248 (551)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 248 (551)
+++++|.+++..+..|..+++|+.|++++|++. .++...|.++++|+.+++++|++.+..+..|..+++|++|++++|
T Consensus 134 -l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 211 (284)
T d1ozna_ 134 -LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (284)
T ss_dssp -EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -hhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence 444444444444455555666666666666665 555555666666666666666666666666666666666666666
Q ss_pred cccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 249 HFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
.+.+.. +..|..+++|++|++++|.+..
T Consensus 212 ~i~~~~-----~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 212 NLSALP-----TEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp CCSCCC-----HHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccc-----ccccccccccCEEEecCCCCCC
Confidence 666532 3336666666666666666554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-23 Score=197.22 Aligned_cols=206 Identities=21% Similarity=0.162 Sum_probs=164.4
Q ss_pred hCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCccccc
Q 046908 211 SGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLS 290 (551)
Q Consensus 211 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 290 (551)
....++.+++.+++.++. +|..+. +++++|+|++|.++++.+. .|..+++|++|++++|.++..... ..++
T Consensus 7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~-----~f~~l~~L~~L~L~~N~l~~l~~~-~~l~ 77 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLA-----TLMPYTRLTQLNLDRAELTKLQVD-GTLP 77 (266)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGG-----GGTTCTTCCEEECTTSCCCEEECC-SCCT
T ss_pred cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHH-----Hhhccccccccccccccccccccc-cccc
Confidence 345677788999999885 455442 5799999999999865433 388999999999999999876533 2688
Q ss_pred ccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCccc
Q 046908 291 SVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE 370 (551)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~ 370 (551)
+|++|++++|+++ ..+..+..+++|+.|++++|.+....+.. +..+.+++.|++++|.++..
T Consensus 78 ~L~~L~Ls~N~l~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------~~~l~~l~~L~l~~n~l~~l 139 (266)
T d1p9ag_ 78 VLGTLDLSHNQLQ-------SLPLLGQTLPALTVLDVSFNRLTSLPLGA-----------LRGLGELQELYLKGNELKTL 139 (266)
T ss_dssp TCCEEECCSSCCS-------SCCCCTTTCTTCCEEECCSSCCCCCCSST-----------TTTCTTCCEEECTTSCCCCC
T ss_pred ccccccccccccc-------ccccccccccccccccccccccceeeccc-----------ccccccccccccccccccee
Confidence 8999999999887 56677888889999999998887433332 46777888899999888877
Q ss_pred CCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 371 IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 371 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
.+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.|.+.
T Consensus 140 ~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 7777788888999999999988777788888889999999999888 677777788888888888888877653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-23 Score=193.72 Aligned_cols=203 Identities=22% Similarity=0.258 Sum_probs=163.6
Q ss_pred ccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhcc
Q 046908 186 GEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQ 265 (551)
Q Consensus 186 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 265 (551)
.+...+.+++.++++++ .+|..+ .+++++|+|++|++++..+.+|.++++|++|+|++|.++.+.. +..
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~~ 75 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGT 75 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSC
T ss_pred cccCCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-------ccc
Confidence 34556666777777777 677655 2568888888888887777778888888888888888875432 456
Q ss_pred CCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhc
Q 046908 266 LKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSR 345 (551)
Q Consensus 266 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 345 (551)
+++|++|++++|+++........+++|++|++++|.+.. ..+..+..+.++++|++++|.+. .+|...
T Consensus 76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~----- 143 (266)
T d1p9ag_ 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS------LPLGALRGLGELQELYLKGNELK-TLPPGL----- 143 (266)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC------CCSSTTTTCTTCCEEECTTSCCC-CCCTTT-----
T ss_pred cccccccccccccccccccccccccccccccccccccce------eeccccccccccccccccccccc-eecccc-----
Confidence 888999999999888766554488999999999998762 33455778899999999999998 444432
Q ss_pred hhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 346 FLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 346 l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
+..++.++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|.+..
T Consensus 144 -----~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 144 -----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp -----TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -----ccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 577889999999999999888888999999999999999999 677777789999999999998763
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.86 E-value=3.1e-19 Score=173.89 Aligned_cols=200 Identities=26% Similarity=0.327 Sum_probs=116.3
Q ss_pred CCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEc
Q 046908 8 NLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLI 87 (551)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 87 (551)
++++|||++++++ .+|+ ..++|++|+|++|+|+ .+|+.+ .+|+.|++++|.+.. ++ .+
T Consensus 39 ~l~~LdLs~~~L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~-----~l-------- 96 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LS-----DL-------- 96 (353)
T ss_dssp TCSEEECTTSCCS-CCCS---CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CC-----SC--------
T ss_pred CCCEEEeCCCCCC-CCCC---CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hh-----hh--------
Confidence 5777788777776 4554 2467777777777777 556543 466777776665541 11 01
Q ss_pred ccCcccccccCCCccCCCCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 88 SSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 88 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
.+.|++|++++|.+..+|. +..+++|++|+++++.+.. .+. ..+.+
T Consensus 97 ----------------p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~-------------~~~----~~~~l 142 (353)
T d1jl5a_ 97 ----------------PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-------------LPD----LPPSL 142 (353)
T ss_dssp ----------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSC-------------CCC----CCTTC
T ss_pred ----------------ccccccccccccccccccc-hhhhccceeeccccccccc-------------ccc----ccccc
Confidence 1257777777777777764 4567777777777776652 111 13456
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
..+.+..+... ....+..++.++.+++++|... .++.. ....+.+...++.+.. ...+..++.|+.+++++
T Consensus 143 ~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~ 213 (353)
T d1jl5a_ 143 EFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE--LPELQNLPFLTTIYADN 213 (353)
T ss_dssp CEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCS
T ss_pred cchhhcccccc--ccccccccccceeccccccccc-ccccc----cccccccccccccccc--ccccccccccccccccc
Confidence 66666555443 2334566777777887777765 33321 2334555555554432 12345667777777777
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
|...... ....++..+.+.++.+..
T Consensus 214 n~~~~~~---------~~~~~l~~~~~~~~~~~~ 238 (353)
T d1jl5a_ 214 NLLKTLP---------DLPPSLEALNVRDNYLTD 238 (353)
T ss_dssp SCCSSCC---------SCCTTCCEEECCSSCCSC
T ss_pred ccccccc---------cccccccccccccccccc
Confidence 6654321 223456666666665543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.6e-20 Score=171.44 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=158.7
Q ss_pred CCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcc
Q 046908 9 LFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLIS 88 (551)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 88 (551)
.++++.++.+++ .+|+.+. +++++|+|++|.|+...+.+|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus 10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 378899998888 5665543 5899999999999976677899999999999999998877888889999999999887
Q ss_pred cCcccccccCCCccCCCCccEEEccCCCCCCCch--hhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhc-C
Q 046908 89 SGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVL-Q 165 (551)
Q Consensus 89 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l-~ 165 (551)
.++.....+...|..+++|+++++++|++...+. .+..+..+..+...++.+. .++...+..+ .
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-------------~i~~~~~~~~~~ 153 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------TIERNSFVGLSF 153 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-------------EECTTSSTTSBS
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc-------------cccccccccccc
Confidence 7666777777788999999999999999876653 3334455555555665555 3333333223 3
Q ss_pred CccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEec
Q 046908 166 KLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYL 245 (551)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 245 (551)
.++.+++++|.++...+..+......+.+++.+|+++ .+|...|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred cceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 6777777777777555544433322333455666676 677777777777777777777777665556666666666555
Q ss_pred c
Q 046908 246 D 246 (551)
Q Consensus 246 ~ 246 (551)
.
T Consensus 233 ~ 233 (242)
T d1xwdc1 233 Y 233 (242)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=6.4e-18 Score=164.42 Aligned_cols=262 Identities=24% Similarity=0.200 Sum_probs=160.4
Q ss_pred CCccEEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcc
Q 046908 105 SQLKVLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYS 184 (551)
Q Consensus 105 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 184 (551)
.+|+.|++++|.++.++.. .+.|++|++++|.+. .+|.. ..+++|+.|+++++.+.....
T Consensus 78 ~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~-------------~lp~~--~~l~~L~~L~l~~~~~~~~~~-- 137 (353)
T d1jl5a_ 78 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-------------KLPEL--QNSSFLKIIDVDNNSLKKLPD-- 137 (353)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-------------SCCCC--TTCTTCCEEECCSSCCSCCCC--
T ss_pred hhhhhhhhhhcccchhhhh---ccccccccccccccc-------------cccch--hhhccceeecccccccccccc--
Confidence 4677777777777666532 235888888888876 45532 236788888888887764322
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhc
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLS 264 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 264 (551)
....+..+.+.++... .. ..+..++.++.+++++|....... .....+.+...++.+.... .+.
T Consensus 138 --~~~~l~~l~~~~~~~~-~~--~~l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~~~~-------~~~ 201 (353)
T d1jl5a_ 138 --LPPSLEFIAAGNNQLE-EL--PELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELP-------ELQ 201 (353)
T ss_dssp --CCTTCCEEECCSSCCS-SC--CCCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCC-------CCT
T ss_pred --ccccccchhhcccccc-cc--ccccccccceeccccccccccccc----ccccccccccccccccccc-------ccc
Confidence 2456666777666553 11 123346777888888776653221 1233455666555544321 145
Q ss_pred cCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVS 344 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 344 (551)
.++.|+.+++++|....... ...++..+.+.++.+. ..+. ....+...++..+.+.+. +.
T Consensus 202 ~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~-------~~~~---~~~~l~~~~~~~~~~~~l-~~------ 261 (353)
T d1jl5a_ 202 NLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT-------DLPE---LPQSLTFLDVSENIFSGL-SE------ 261 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS-------CCCC---CCTTCCEEECCSSCCSEE-SC------
T ss_pred cccccccccccccccccccc---cccccccccccccccc-------cccc---cccccccccccccccccc-cc------
Confidence 67788888888877655432 2456677777777654 2221 224555566655554421 10
Q ss_pred chhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCC
Q 046908 345 RFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLT 424 (551)
Q Consensus 345 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 424 (551)
-.......++..+.+.+ ....+++|++|++++|+++ .+|+ .+++|+.|++++|+|+ .+|..
T Consensus 262 --------l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~-- 322 (353)
T d1jl5a_ 262 --------LPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL-- 322 (353)
T ss_dssp --------CCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC--
T ss_pred --------ccchhcccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc--
Confidence 01223455666665552 2234678999999999988 4554 3578899999999988 55643
Q ss_pred CCCCCCeEECCCCccccC
Q 046908 425 GLNFLSNFNVSYNNLSGP 442 (551)
Q Consensus 425 ~l~~L~~l~l~~N~l~~~ 442 (551)
+++|++|++++|+++..
T Consensus 323 -~~~L~~L~L~~N~L~~l 339 (353)
T d1jl5a_ 323 -PQNLKQLHVEYNPLREF 339 (353)
T ss_dssp -CTTCCEEECCSSCCSSC
T ss_pred -cCCCCEEECcCCcCCCC
Confidence 45788999999998754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.4e-22 Score=203.67 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCCCEEECcCCCCcccC-CccCCCCCCCCEEEcccCcCccc----cchhccCCCCCCEeeCCCCccccccC---hhhhc-
Q 046908 7 KNLFELDLSSNNFEGHI-PQCLNNLTHLKVLDISNNQLSGK----VPSTLTNLTSLEYLDRFSINFQGTIS---INSLA- 77 (551)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~- 77 (551)
.+|+.||+++|++++.. .+.+..+++++.|+|++|.++.. +..++..+++|++|+|++|.+...-. ...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36889999999987532 34466788999999999988743 34556788899999998887752110 01111
Q ss_pred CCCCCCEEEcccCcccccc---cCCCccCCCCccEEEccCCCC
Q 046908 78 NHSKLEVLLISSGSNMLQV---KTETWHPTSQLKVLKLSDCHL 117 (551)
Q Consensus 78 ~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l 117 (551)
...+|++|++++|.+.... ....+..+++|++|++++|.+
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence 2235666666666543221 112344556666666666665
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=5.4e-19 Score=160.62 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=108.0
Q ss_pred cEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEeccc
Q 046908 168 IYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDN 247 (551)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 247 (551)
..++++.+.+.+.. .+.++.+|+.|++.+|+++ .++. +..+++|++|++++|.+.+..+ +..+++++.+++++
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence 33455555555432 3345666777777777665 4532 3456666666666666654332 56666666666666
Q ss_pred ccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEe
Q 046908 248 NHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLL 327 (551)
Q Consensus 248 n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l 327 (551)
|.++... .+..+++|+.++++++...+..+ +...+.++.+.+
T Consensus 95 n~~~~i~-------~l~~l~~L~~l~l~~~~~~~~~~-------------------------------~~~~~~~~~l~~ 136 (227)
T d1h6ua2 95 NPLKNVS-------AIAGLQSIKTLDLTSTQITDVTP-------------------------------LAGLSNLQVLYL 136 (227)
T ss_dssp CCCSCCG-------GGTTCTTCCEEECTTSCCCCCGG-------------------------------GTTCTTCCEEEC
T ss_pred ccccccc-------cccccccccccccccccccccch-------------------------------hccccchhhhhc
Confidence 6554321 24555666666666555443221 223344444444
Q ss_pred cCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCE
Q 046908 328 RGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTES 407 (551)
Q Consensus 328 ~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 407 (551)
+++.+....+ +.++++|+.|++++|.+.+. ..+.++++|++|++++|++++. + .+.++++|++
T Consensus 137 ~~~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~ 199 (227)
T d1h6ua2 137 DLNQITNISP-------------LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIE 199 (227)
T ss_dssp CSSCCCCCGG-------------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCE
T ss_pred hhhhhchhhh-------------hccccccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCE
Confidence 4444331111 23344555555555555422 2255566666666666666543 2 2556666666
Q ss_pred EeCCCCcCcccCCCCCCCCCCCCeEECC
Q 046908 408 LDLSHNRLSGHIPPQLTGLNFLSNFNVS 435 (551)
Q Consensus 408 L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 435 (551)
|++++|++++.. .+..++.|+.|+++
T Consensus 200 L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 200 VHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp EECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred EECcCCcCCCCc--ccccCCCCCEEEee
Confidence 666666666332 25566666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2e-18 Score=158.58 Aligned_cols=217 Identities=17% Similarity=0.125 Sum_probs=122.8
Q ss_pred EEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEE
Q 046908 193 MQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELI 272 (551)
Q Consensus 193 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L 272 (551)
.++.++..++ .+|..++ +++++|++++|+++...+.+|.++++|++|++++|.+....+. ..|..+++++++
T Consensus 12 ~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~----~~f~~l~~l~~l 83 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEI 83 (242)
T ss_dssp EEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS----SSEESCTTCCEE
T ss_pred EEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec----cccccccccccc
Confidence 4444444444 4554432 3455555555555555445555566666666665555432111 115555666665
Q ss_pred ECCC-CcccccCCCcc-cccccceeeccccccccCccceeccCc--cccccCCCceEEecCCcccccCChhhhhhhchhh
Q 046908 273 DIFE-NSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPY--QINELSNLHVLLLRGNSLQGHIPNELCHVSRFLH 348 (551)
Q Consensus 273 ~l~~-n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 348 (551)
.+.. |.+....+..+ ++++|+++++.+|.++ ..+. .+..+..+..+...++.+...-+..
T Consensus 84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-------~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~--------- 147 (242)
T d1xwdc1 84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-------HLPDVHKIHSLQKVLLDIQDNINIHTIERNS--------- 147 (242)
T ss_dssp EEECCTTCCEECTTSEECCTTCCEEEEESCCCC-------SCCCCTTTCBSSCEEEEEESCTTCCEECTTS---------
T ss_pred cccccccccccccccccccccccccccchhhhc-------ccccccccccccccccccccccccccccccc---------
Confidence 5543 44555555555 5666666666666554 1111 1223444444455555554222222
Q ss_pred Hhhhcc-ccCceEecCCCcCcccCCccccCCCCCcEE-EcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCC
Q 046908 349 RFYSNL-KYMAGLDLSSNELSGEIPREIGQLQNIRAL-NLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGL 426 (551)
Q Consensus 349 ~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 426 (551)
|.++ ..++.|++++|+++...+..+. .++++++ .+++|+++.+.+..|.++++|++|++++|+++...+..|..+
T Consensus 148 --~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 224 (242)
T d1xwdc1 148 --FVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224 (242)
T ss_dssp --STTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred --cccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence 2333 3567788888888754444443 3455444 567788886666678888999999999998886556677777
Q ss_pred CCCCeEECCC
Q 046908 427 NFLSNFNVSY 436 (551)
Q Consensus 427 ~~L~~l~l~~ 436 (551)
+.|+++++.+
T Consensus 225 ~~L~~l~~~~ 234 (242)
T d1xwdc1 225 KKLRARSTYN 234 (242)
T ss_dssp CEEESSSEES
T ss_pred cccccCcCCC
Confidence 7777766643
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=3.7e-18 Score=154.99 Aligned_cols=186 Identities=17% Similarity=0.234 Sum_probs=128.0
Q ss_pred cCCccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEE
Q 046908 164 LQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWL 243 (551)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 243 (551)
+.+|+.|++.+|.++.. ..+..+++|++|++++|++. .++. +..+++++++++++|.++.. ..+.++++|+.+
T Consensus 40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l 112 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (227)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccccc--cccccccccccc
Confidence 67999999999999854 35899999999999999998 4443 57799999999999988753 458899999999
Q ss_pred ecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCc
Q 046908 244 YLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLH 323 (551)
Q Consensus 244 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~ 323 (551)
+++++...... .+...+.++.+.++.+.+....+ ...+++|++|++++|.++. . ..+.++
T Consensus 113 ~l~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~-------~-~~l~~l---- 172 (227)
T d1h6ua2 113 DLTSTQITDVT-------PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------L-TPLANL---- 172 (227)
T ss_dssp ECTTSCCCCCG-------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------C-GGGTTC----
T ss_pred ccccccccccc-------hhccccchhhhhchhhhhchhhh-hcccccccccccccccccc-------c-hhhccc----
Confidence 99999876532 26677888888887776654322 1145556666655554431 1 113344
Q ss_pred eEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCC
Q 046908 324 VLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLK 403 (551)
Q Consensus 324 ~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 403 (551)
++|+.|++++|++++ ++ .+.++++|++|++++|++++..+ +++++
T Consensus 173 -------------------------------~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~ 217 (227)
T d1h6ua2 173 -------------------------------SKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTS 217 (227)
T ss_dssp -------------------------------TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCT
T ss_pred -------------------------------ccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCC
Confidence 445555555555542 22 25566667777777776664432 56667
Q ss_pred CCCEEeCC
Q 046908 404 MTESLDLS 411 (551)
Q Consensus 404 ~L~~L~l~ 411 (551)
+|+.|+++
T Consensus 218 ~L~~L~ls 225 (227)
T d1h6ua2 218 NLFIVTLT 225 (227)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEee
Confidence 77777665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.76 E-value=7.6e-19 Score=154.95 Aligned_cols=133 Identities=24% Similarity=0.345 Sum_probs=91.0
Q ss_pred ceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCC
Q 046908 293 KHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP 372 (551)
Q Consensus 293 ~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~ 372 (551)
++++.++++++ .+|..+. +++++|+|++|+|+..++... |.++++|+.|++++|.+.+..+
T Consensus 11 ~~v~Cs~~~L~-------~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~----------f~~l~~L~~L~L~~N~i~~~~~ 71 (192)
T d1w8aa_ 11 TTVDCTGRGLK-------EIPRDIP--LHTTELLLNDNELGRISSDGL----------FGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-------SCCSCCC--TTCSEEECCSCCCCSBCCSCS----------GGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEEeCCCcC-------ccCCCCC--CCCCEEEeCCCCCcccccccc----------cCCCceEeeeeccccccccccc
Confidence 34555566555 5555443 466777777777764444332 5666777777777777776667
Q ss_pred ccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCCC
Q 046908 373 REIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPTP 444 (551)
Q Consensus 373 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 444 (551)
..|..+++|++|+|++|+|+++.+++|.++++|++|+|++|+|+++.|++|..+++|++++|++|++.+.++
T Consensus 72 ~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~ 143 (192)
T d1w8aa_ 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence 777777777777777777776666777777777777777777777667777777777777777777766554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.3e-19 Score=183.16 Aligned_cols=136 Identities=20% Similarity=0.174 Sum_probs=87.6
Q ss_pred CCCCCCEEECcCCCCcc----cCCccCCCCCCCCEEEcccCcCccccc----hhcc-CCCCCCEeeCCCCccccccC---
Q 046908 5 NLKNLFELDLSSNNFEG----HIPQCLNNLTHLKVLDISNNQLSGKVP----STLT-NLTSLEYLDRFSINFQGTIS--- 72 (551)
Q Consensus 5 ~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~-~l~~L~~L~L~~n~~~~~~~--- 72 (551)
.++++++|+|++|+++. .+...+..+++|++|||++|.|++... ..+. ...+|++|++++|.++....
T Consensus 25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l 104 (460)
T d1z7xw1 25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104 (460)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence 46899999999999873 334567899999999999999974322 2232 33589999999999874321
Q ss_pred hhhhcCCCCCCEEEcccCcccccccCC----CccCCCCccEEEccCCCCCCC-----chhhhCCCCCCEEEccCCcc
Q 046908 73 INSLANHSKLEVLLISSGSNMLQVKTE----TWHPTSQLKVLKLSDCHLHVI-----PSFLLQHYHLIFLDLSNNKV 140 (551)
Q Consensus 73 ~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~Ls~n~l 140 (551)
...+..+++|++|++++|.+....... ..................... ...+.....++.++++++..
T Consensus 105 ~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~ 181 (460)
T d1z7xw1 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181 (460)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccc
Confidence 245678999999999998754321110 111222344445444444211 12344556677777776654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=2.5e-17 Score=147.24 Aligned_cols=180 Identities=23% Similarity=0.327 Sum_probs=96.8
Q ss_pred EECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEE
Q 046908 194 QDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELID 273 (551)
Q Consensus 194 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 273 (551)
.+++.+.+++.++..- +.+|+.|++++|.+.... .+..+++|++|++++|.+++.. .+..+++|++|+
T Consensus 29 ~~l~~~~~~~~~~~~~---L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~-------~~~~l~~L~~L~ 96 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK-------PLANLKNLGWLF 96 (210)
T ss_dssp HHTTCSCTTSEECHHH---HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEE
T ss_pred HHhCcCccCCccCHHH---hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc-------ccccCccccccc
Confidence 3455566655555432 456777777777765432 3556677777777777665432 145566666666
Q ss_pred CCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhc
Q 046908 274 IFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSN 353 (551)
Q Consensus 274 l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~ 353 (551)
+++|++++.. ....+++|+.|++.+|.+. .+ ..+..++
T Consensus 97 l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~-------~~-~~l~~l~--------------------------------- 134 (210)
T d1h6ta2 97 LDENKVKDLS-SLKDLKKLKSLSLEHNGIS-------DI-NGLVHLP--------------------------------- 134 (210)
T ss_dssp CCSSCCCCGG-GGTTCTTCCEEECTTSCCC-------CC-GGGGGCT---------------------------------
T ss_pred cccccccccc-ccccccccccccccccccc-------cc-ccccccc---------------------------------
Confidence 6666665432 1114455555555555433 11 1233444
Q ss_pred cccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
.++.+++++|.+++ +..+..+++|+++++++|++++.. .+.++++|++|++++|+++. +| .+.++++|++|+
T Consensus 135 --~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~ 206 (210)
T d1h6ta2 135 --QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 206 (210)
T ss_dssp --TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred --cccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence 44555555554442 223445556666666666665432 25556666666666666653 33 355666666666
Q ss_pred CC
Q 046908 434 VS 435 (551)
Q Consensus 434 l~ 435 (551)
|+
T Consensus 207 Ls 208 (210)
T d1h6ta2 207 LF 208 (210)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=5.4e-17 Score=145.03 Aligned_cols=142 Identities=21% Similarity=0.302 Sum_probs=108.5
Q ss_pred EEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccc
Q 046908 169 YLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNN 248 (551)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 248 (551)
...+..+.+.+..+. .++.+|+.|++++|.+. .++. +..+++|++|++++|++++.. .+..+++|+.|++++|
T Consensus 28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n 100 (210)
T d1h6ta2 28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDEN 100 (210)
T ss_dssp HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred HHHhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCccccccccccc
Confidence 345666666655443 35789999999999998 5553 356999999999999998754 4678999999999999
Q ss_pred cccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEec
Q 046908 249 HFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLR 328 (551)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 328 (551)
++++. + .+..+++|+.|++++|.+.... ....++.++.+++++|.+++ +..+..+++|++++++
T Consensus 101 ~i~~l------~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~--------~~~~~~l~~L~~l~l~ 164 (210)
T d1h6ta2 101 KVKDL------S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLE 164 (210)
T ss_dssp CCCCG------G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECC
T ss_pred ccccc------c-cccccccccccccccccccccc-cccccccccccccccccccc--------cccccccccccccccc
Confidence 99753 2 3788999999999999887643 22278999999999998762 2345566777777777
Q ss_pred CCccc
Q 046908 329 GNSLQ 333 (551)
Q Consensus 329 ~n~l~ 333 (551)
+|+++
T Consensus 165 ~n~l~ 169 (210)
T d1h6ta2 165 DNQIS 169 (210)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 77665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=2e-17 Score=145.66 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccc-cCCcccccCCCCcEEECcCCccceeCChh
Q 046908 130 LIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEG-DIPYSIGEMKELYMQDLSRNNFSGELPQP 208 (551)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 208 (551)
.+.++.++++++ .+|..+. +++++|+|++|.++. ..+..|.++++|+.|++++|++. .++..
T Consensus 10 ~~~v~Cs~~~L~-------------~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~ 72 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-------------EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN 72 (192)
T ss_dssp TTEEECTTSCCS-------------SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTT
T ss_pred CCEEEEeCCCcC-------------ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-ccccc
Confidence 345666666665 4454332 356666666666653 33445556666666666666665 44445
Q ss_pred hhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 209 IVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 209 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
.|..+++|++|++++|++....+.+|.++++|++|+|++|.++.+.+++ |..+++|+++++++|.+..
T Consensus 73 ~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~-----f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-----FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-----STTCTTCCEEECTTCCBCC
T ss_pred ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHH-----hcCCccccccccccccccc
Confidence 5555566666666666666555555666666666666666655544433 5555555555555555443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=9.4e-17 Score=142.16 Aligned_cols=177 Identities=25% Similarity=0.320 Sum_probs=86.8
Q ss_pred EECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEE
Q 046908 194 QDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELID 273 (551)
Q Consensus 194 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 273 (551)
..++.+.+++.++.. .+.++++|++++|.+... +.++.+++|++|++++|++++.. .+..+++|++|+
T Consensus 23 ~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~-------~l~~l~~L~~L~ 90 (199)
T d2omxa2 23 TVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT-------PLKNLTKLVDIL 90 (199)
T ss_dssp HHTTCSSTTSEECHH---HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEE
T ss_pred HHhCCCCCCCccCHH---HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc-------cccCCccccccc
Confidence 345555555333322 245566666666655432 22444555555555555554321 144455555555
Q ss_pred CCCCcccccCCCcccccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhc
Q 046908 274 IFENSLSGSLVSSFNLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSN 353 (551)
Q Consensus 274 l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~ 353 (551)
+++|.+.... .+.+++.|+.+++++|.+... + . +..
T Consensus 91 l~~n~~~~~~-------------------------------~l~~l~~L~~L~l~~~~~~~~-~-~-----------~~~ 126 (199)
T d2omxa2 91 MNNNQIADIT-------------------------------PLANLTNLTGLTLFNNQITDI-D-P-----------LKN 126 (199)
T ss_dssp CCSSCCCCCG-------------------------------GGTTCTTCSEEECCSSCCCCC-G-G-----------GTT
T ss_pred cccccccccc-------------------------------ccccccccccccccccccccc-c-c-----------cch
Confidence 5554443322 234445555555555544311 1 0 234
Q ss_pred cccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeE
Q 046908 354 LKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNF 432 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 432 (551)
+++|+.|++++|++. .+ +.+..+++|++|++++|++++.. .+.++++|++|++++|+++. ++ .+..+++|+.|
T Consensus 127 l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 127 LTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred hhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 455555555555554 22 23555566666666666665432 25566666666666666653 22 34555555543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.6e-16 Score=138.36 Aligned_cols=162 Identities=18% Similarity=0.193 Sum_probs=92.1
Q ss_pred CCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEcccCcccccccCCCccCCCCcc
Q 046908 29 NLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISSGSNMLQVKTETWHPTSQLK 108 (551)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 108 (551)
.++++++|++++|.++.. +.+..+++|++|++++|.+++..+ +.++++|++|++++|.... ++ .+..+++|+
T Consensus 38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~~-~~--~l~~l~~L~ 109 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD-IT--PLANLTNLT 109 (199)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc---ccCCccccccccccccccc-cc--ccccccccc
Confidence 345555666666655532 234555566666666555543221 5555566666665554222 21 245566666
Q ss_pred EEEccCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCccEEEccCCcccccCCcccccC
Q 046908 109 VLKLSDCHLHVIPSFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEM 188 (551)
Q Consensus 109 ~L~l~~n~l~~l~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 188 (551)
.|++++|.+..++ .+..+++|+.|++++|.+. .++. ...+++++.|++.+|.+++.. .+.++
T Consensus 110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-------------~~~~--l~~~~~L~~L~l~~n~l~~l~--~l~~l 171 (199)
T d2omxa2 110 GLTLFNNQITDID-PLKNLTNLNRLELSSNTIS-------------DISA--LSGLTSLQQLNFSSNQVTDLK--PLANL 171 (199)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC-------------CCGG--GTTCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred ccccccccccccc-ccchhhhhHHhhhhhhhhc-------------cccc--ccccccccccccccccccCCc--cccCC
Confidence 6666666665443 3555666777777666654 2321 122566777777777666432 36677
Q ss_pred CCCcEEECcCCccceeCChhhhhCCCCCCEE
Q 046908 189 KELYMQDLSRNNFSGELPQPIVSGCVALDLF 219 (551)
Q Consensus 189 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 219 (551)
++|+.|++++|+++ .++. +..+++|+.|
T Consensus 172 ~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L 199 (199)
T d2omxa2 172 TTLERLDISSNKVS-DISV--LAKLTNLESL 199 (199)
T ss_dssp TTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred CCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence 77777777777776 4542 3457777664
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.2e-17 Score=150.60 Aligned_cols=204 Identities=18% Similarity=0.172 Sum_probs=104.9
Q ss_pred ccEEEccCCcccccCCcccccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCCcccCCCCCCCEEecc
Q 046908 167 LIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIFPKYMNLTHLHWLYLD 246 (551)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 246 (551)
...+.++...+..... ......+|+.||++++.+.+.....++..+++|++|+++++.+.+.....+..+++|++|+++
T Consensus 25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 4445555444432222 222345777777777776544444556667777777777777766555666677777777777
Q ss_pred cc-cccCcCCCchhhHhhccCCCCCEEECCCCc-ccccCC-Ccc--cccccceeeccccccccCccceeccCccccccCC
Q 046908 247 NN-HFSGKMDDANILVQLSQLKSLELIDIFENS-LSGSLV-SSF--NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSN 321 (551)
Q Consensus 247 ~n-~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~ 321 (551)
++ .++.. .+..-...+++|++|+++++. +++... ... ..+.|+.|+++++.-
T Consensus 104 ~c~~itd~----~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------- 160 (284)
T d2astb2 104 GCSGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK------------------- 160 (284)
T ss_dssp TCBSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG-------------------
T ss_pred cccccccc----ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc-------------------
Confidence 64 33321 222334556677777776642 322111 111 233444444443210
Q ss_pred CceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC-cCcccCCccccCCCCCcEEEcCCC-CCCCcccccc
Q 046908 322 LHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN-ELSGEIPREIGQLQNIRALNLSNN-FLSGAIPESF 399 (551)
Q Consensus 322 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 399 (551)
.++. ..+. ....++++|++|++++| .+++.....+.++++|++|++++| .+++.....+
T Consensus 161 ---------~i~~---~~l~-------~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L 221 (284)
T d2astb2 161 ---------NLQK---SDLS-------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221 (284)
T ss_dssp ---------GSCH---HHHH-------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred ---------cccc---cccc-------ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH
Confidence 1110 0000 01234555555555554 344444455555666666666663 4544444445
Q ss_pred cCCCCCCEEeCCCC
Q 046908 400 SNLKMTESLDLSHN 413 (551)
Q Consensus 400 ~~l~~L~~L~l~~n 413 (551)
.++++|+.|+++++
T Consensus 222 ~~~~~L~~L~l~~~ 235 (284)
T d2astb2 222 GEIPTLKTLQVFGI 235 (284)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeeeCC
Confidence 55666666666655
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5e-16 Score=145.49 Aligned_cols=183 Identities=18% Similarity=0.154 Sum_probs=117.3
Q ss_pred CCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCcc-cccccceeecccc-ccccCccceeccCc
Q 046908 237 LTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKN-AITGDNKFFGRIPY 314 (551)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~ 314 (551)
..+|++|+++++.++.. .+...+..+++|++|+++++.+++.....+ .+++|++|++++| .+++. .+..
T Consensus 45 ~~~L~~LdLs~~~i~~~----~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~ 115 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVS----TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQT 115 (284)
T ss_dssp CBCCCEEECTTCEECHH----HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHH
T ss_pred CCCCCEEECCCCccCHH----HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccch
Confidence 34566666666555421 233445566666666666666554433333 5566666666664 23310 1122
Q ss_pred cccccCCCceEEecCCc-ccccCChhhhhhhchhhHhhhccccCceEecCCC--cCccc-CCccccCCCCCcEEEcCCC-
Q 046908 315 QINELSNLHVLLLRGNS-LQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN--ELSGE-IPREIGQLQNIRALNLSNN- 389 (551)
Q Consensus 315 ~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~L~~n- 389 (551)
....+++|++|++++|. ++.. .+ ........+.|+.|+++++ .+++. +.....++++|++|++++|
T Consensus 116 l~~~~~~L~~L~ls~c~~~~~~---~~------~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 186 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFTEK---HV------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCCHH---HH------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred hhHHHHhccccccccccccccc---cc------hhhhcccccccchhhhccccccccccccccccccccccccccccccc
Confidence 24567889999998864 3311 11 1111234578999999976 34432 2333467899999999986
Q ss_pred CCCCcccccccCCCCCCEEeCCCC-cCcccCCCCCCCCCCCCeEECCCC
Q 046908 390 FLSGAIPESFSNLKMTESLDLSHN-RLSGHIPPQLTGLNFLSNFNVSYN 437 (551)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~l~l~~N 437 (551)
.+++.....+.++++|++|++++| .++......+..+++|+.|+++++
T Consensus 187 ~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 577667778889999999999996 677665667788999999999987
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.2e-15 Score=126.75 Aligned_cols=127 Identities=18% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCCCCEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCC
Q 046908 4 CNLKNLFELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLE 83 (551)
Q Consensus 4 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (551)
.+..++++|||++|+|+.+ +..+..+++|+.|+|++|.|+.. +.|..+++|++|++++|.+..
T Consensus 15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~-------------- 77 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-------------- 77 (162)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--------------
T ss_pred cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC--------------
Confidence 3445556666666666532 44445555666666666655532 235555555555555555542
Q ss_pred EEEcccCcccccccCCCccCCCCccEEEccCCCCCCCch--hhhCCCCCCEEEccCCcccccCCCCCCCcccccCCh---
Q 046908 84 VLLISSGSNMLQVKTETWHPTSQLKVLKLSDCHLHVIPS--FLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPR--- 158 (551)
Q Consensus 84 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~--- 158 (551)
++...+..+++|++|++++|.+..++. .+..+++|++|++++|+++ ..|.
T Consensus 78 ------------l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-------------~~~~~r~ 132 (162)
T d1a9na_ 78 ------------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-------------NKKHYRL 132 (162)
T ss_dssp ------------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-------------GSTTHHH
T ss_pred ------------CCccccccccccccceeccccccccccccccccccccchhhcCCCccc-------------cccchHH
Confidence 222234445566666666666655543 4556666777777776665 3332
Q ss_pred hHhhhcCCccEEEc
Q 046908 159 NMGIVLQKLIYLDM 172 (551)
Q Consensus 159 ~~~~~l~~L~~L~L 172 (551)
.+...+|+|++||.
T Consensus 133 ~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 133 YVIYKVPQVRVLDF 146 (162)
T ss_dssp HHHHHCTTCSEETT
T ss_pred HHHHHCCCcCeeCC
Confidence 23444667776663
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.53 E-value=1.5e-15 Score=146.75 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred CCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCc-------------c-cccccceeecccc
Q 046908 235 MNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS-------------F-NLSSVKHLYLQKN 300 (551)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~-~~~~L~~L~L~~n 300 (551)
..+++|+.|+|++|.+.... ...+...+...++|+.|++++|.+....... . ..+.|+.+.+++|
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n 168 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCCccccccccccccccc-ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence 34445555555555443211 1123333444555555555555443211000 0 2345566666666
Q ss_pred ccccCccceeccCccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCccc----CCcccc
Q 046908 301 AITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGE----IPREIG 376 (551)
Q Consensus 301 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~ 376 (551)
.++... ...+...+..++.|+.|++++|.+...... ......+..++.|+.|++++|.++.. +...+.
T Consensus 169 ~i~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~------~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~ 240 (344)
T d2ca6a1 169 RLENGS--MKEWAKTFQSHRLLHTVKMVQNGIRPEGIE------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240 (344)
T ss_dssp CCTGGG--HHHHHHHHHHCTTCCEEECCSSCCCHHHHH------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred cccccc--cccccchhhhhhhhcccccccccccccccc------cchhhhhcchhhhccccccccccccccccccccccc
Confidence 554211 012223344556666666666665421100 00111234556666677776666432 234455
Q ss_pred CCCCCcEEEcCCCCCCCccc----cccc--CCCCCCEEeCCCCcCccc----CCCCCC-CCCCCCeEECCCCccc
Q 046908 377 QLQNIRALNLSNNFLSGAIP----ESFS--NLKMTESLDLSHNRLSGH----IPPQLT-GLNFLSNFNVSYNNLS 440 (551)
Q Consensus 377 ~l~~L~~L~L~~n~l~~~~~----~~~~--~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~l~l~~N~l~ 440 (551)
.+++|++|++++|.|++... +.+. ..+.|++|++++|+|... +...+. ..+.|++|++++|++.
T Consensus 241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 66677777777777654311 2222 235677777777766532 111221 3456777777777764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.8e-14 Score=118.52 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=70.9
Q ss_pred cCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCC-cCcccCCccccCCCCCcEEEcCCCCCCCcccc
Q 046908 319 LSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSN-ELSGEIPREIGQLQNIRALNLSNNFLSGAIPE 397 (551)
Q Consensus 319 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 397 (551)
+...+.++.+++.+. ..|..+ .++++|++|++++| .++...+.+|.++++|+.|++++|+|+.+.+.
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l-----------~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 74 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHL-----------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTS-----------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred cCCCCeEEecCCCCc-cCcccc-----------cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence 445566777766665 344432 45566777777655 36655556677777777777777777766666
Q ss_pred cccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEECCCCccccCC
Q 046908 398 SFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFNVSYNNLSGPT 443 (551)
Q Consensus 398 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 443 (551)
+|.++++|++|+|++|+++...+..|.. ..|+.|+|++|++.+.+
T Consensus 75 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C 119 (156)
T d2ifga3 75 AFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSC 119 (156)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCG
T ss_pred cccccccccceeccCCCCcccChhhhcc-ccccccccCCCcccCCc
Confidence 6777777777777777777444444443 35777777777776544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-14 Score=121.59 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=44.4
Q ss_pred cccCCCCcEEECcCCccceeCChhhhhCCCCCCEEECcCCcccccCC-cccCCCCCCCEEecccccccCcCCCchhhHhh
Q 046908 185 IGEMKELYMQDLSRNNFSGELPQPIVSGCVALDLFDLSNNNFFGQIF-PKYMNLTHLHWLYLDNNHFSGKMDDANILVQL 263 (551)
Q Consensus 185 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (551)
+..+++|+.|++++|++. .++..++..+++|+.|++++|++..... ..+..+++|++|++++|+++.... .-...+
T Consensus 59 ~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~--~r~~~i 135 (162)
T d1a9na_ 59 FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH--YRLYVI 135 (162)
T ss_dssp CCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT--HHHHHH
T ss_pred cccCcchhhhhccccccc-CCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccc--hHHHHH
Confidence 444555555555555555 4544444445566666666665543221 344555666666666665543321 112234
Q ss_pred ccCCCCCEEE
Q 046908 264 SQLKSLELID 273 (551)
Q Consensus 264 ~~l~~L~~L~ 273 (551)
..+++|++||
T Consensus 136 ~~lp~L~~LD 145 (162)
T d1a9na_ 136 YKVPQVRVLD 145 (162)
T ss_dssp HHCTTCSEET
T ss_pred HHCCCcCeeC
Confidence 5556666554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=9.8e-15 Score=141.00 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=82.8
Q ss_pred cCCCCCEEECCCCcccccCCCcc-----cccccceeeccccccccCccceeccCccccccCCCceEEecCCcccccCChh
Q 046908 265 QLKSLELIDIFENSLSGSLVSSF-----NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 339 (551)
Q Consensus 265 ~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 339 (551)
..+.|+.+++++|.+.......+ ..+.|++|++++|.++.. .....+...+..+++|+.|++++|.++......
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~ 234 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 234 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhccccccccccccc-ccccchhhhhcchhhhccccccccccccccccc
Confidence 45566666666666543222211 355677777777666421 011112334556777888888877765322221
Q ss_pred hhhhhchhhHhhhccccCceEecCCCcCcccCC----ccccC--CCCCcEEEcCCCCCCCc----ccccc-cCCCCCCEE
Q 046908 340 LCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIP----REIGQ--LQNIRALNLSNNFLSGA----IPESF-SNLKMTESL 408 (551)
Q Consensus 340 ~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~--l~~L~~L~L~~n~l~~~----~~~~~-~~l~~L~~L 408 (551)
+ ...+..+++|++|+|++|.+++... ..+.. .+.|++|++++|+|+.. +...+ .+++.|+.|
T Consensus 235 L-------~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L 307 (344)
T d2ca6a1 235 L-------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307 (344)
T ss_dssp H-------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred c-------cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEE
Confidence 1 1224567778888888887765322 22322 35688888888887642 12223 256788888
Q ss_pred eCCCCcCc
Q 046908 409 DLSHNRLS 416 (551)
Q Consensus 409 ~l~~n~l~ 416 (551)
++++|++.
T Consensus 308 ~l~~N~~~ 315 (344)
T d2ca6a1 308 ELNGNRFS 315 (344)
T ss_dssp ECTTSBSC
T ss_pred ECCCCcCC
Confidence 88888876
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=7.6e-14 Score=112.23 Aligned_cols=87 Identities=29% Similarity=0.359 Sum_probs=52.3
Q ss_pred hccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcccCC-CCCCCCCCCC
Q 046908 352 SNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSGHIP-PQLTGLNFLS 430 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~ 430 (551)
..++.|++|++++|.++ .+|..+..+++|++|++++|+|++. + .+..+++|++|++++|+++.... ..+..+++|+
T Consensus 17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~ 93 (124)
T d1dcea3 17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 93 (124)
T ss_dssp GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence 44455566666666665 4555566666666666666666643 2 35666666666666666663321 3456666666
Q ss_pred eEECCCCcccc
Q 046908 431 NFNVSYNNLSG 441 (551)
Q Consensus 431 ~l~l~~N~l~~ 441 (551)
++++++|+++.
T Consensus 94 ~L~l~~N~i~~ 104 (124)
T d1dcea3 94 LLNLQGNSLCQ 104 (124)
T ss_dssp EEECTTSGGGG
T ss_pred EEECCCCcCCc
Confidence 66666666654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=7.8e-14 Score=112.17 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=87.0
Q ss_pred CEEECcCCCCcccCCccCCCCCCCCEEEcccCcCccccchhccCCCCCCEeeCCCCccccccChhhhcCCCCCCEEEccc
Q 046908 10 FELDLSSNNFEGHIPQCLNNLTHLKVLDISNNQLSGKVPSTLTNLTSLEYLDRFSINFQGTISINSLANHSKLEVLLISS 89 (551)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 89 (551)
|+|||++|+++. ++ .+..+++|++|++++|+++ .+|+.|..+++|++|++++|.+.+. +
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~----------------- 59 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D----------------- 59 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-----------------
T ss_pred CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-----------------
Confidence 689999999984 44 3889999999999999998 5677888999999999998887632 2
Q ss_pred CcccccccCCCccCCCCccEEEccCCCCCCCc--hhhhCCCCCCEEEccCCcccccCCCCCCCcccccCChhHhhhcCCc
Q 046908 90 GSNMLQVKTETWHPTSQLKVLKLSDCHLHVIP--SFLLQHYHLIFLDLSNNKVVGNFPICSNNNFAGKLPRNMGIVLQKL 167 (551)
Q Consensus 90 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~~~~~~l~~L 167 (551)
.+..+++|++|++++|.++.++ ..+..+++|++|++++|+++... .++..+...+|++
T Consensus 60 ----------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~----------~~~~~l~~~lp~L 119 (124)
T d1dcea3 60 ----------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE----------GIQERLAEMLPSV 119 (124)
T ss_dssp ----------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS----------SCTTHHHHHCTTC
T ss_pred ----------ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc----------cHHHHHHHHCcCc
Confidence 1345556667777777776655 35677778888888888776211 3445555567777
Q ss_pred cEE
Q 046908 168 IYL 170 (551)
Q Consensus 168 ~~L 170 (551)
+.+
T Consensus 120 ~~L 122 (124)
T d1dcea3 120 SSI 122 (124)
T ss_dssp SEE
T ss_pred ceE
Confidence 765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.6e-13 Score=110.71 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=96.7
Q ss_pred ccCceEecCCCcCcccCCccccCCCCCcEEEcCCC-CCCCcccccccCCCCCCEEeCCCCcCcccCCCCCCCCCCCCeEE
Q 046908 355 KYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNN-FLSGAIPESFSNLKMTESLDLSHNRLSGHIPPQLTGLNFLSNFN 433 (551)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 433 (551)
...+.++.+++.+. ..|..+.++++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34567888888887 66778888999999999866 58877778899999999999999999988888999999999999
Q ss_pred CCCCccccCCCCCccCCccCCcccCCCCCCCCccc
Q 046908 434 VSYNNLSGPTPDKEQFATFDESSYTGNHELCGSLI 468 (551)
Q Consensus 434 l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 468 (551)
|++|+++...+.......+..+++.+||+.|+|..
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~ 121 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred ccCCCCcccChhhhccccccccccCCCcccCCchH
Confidence 99999997777655555788899999999999865
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.29 E-value=9.9e-14 Score=121.72 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred hHhhccCCCCCEEECCCCcccccCCCcc-cccccceeeccccccccCccceeccCccccccCCCceEEecCCccc
Q 046908 260 LVQLSQLKSLELIDIFENSLSGSLVSSF-NLSSVKHLYLQKNAITGDNKFFGRIPYQINELSNLHVLLLRGNSLQ 333 (551)
Q Consensus 260 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 333 (551)
+..+..+++|++|++++|.++... .+ ++++|++|++++|.|+ .+|.....+++|++|++++|+++
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~-------~i~~~~~~~~~L~~L~l~~N~i~ 106 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-------KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEEC-------SCSSHHHHHHHCCEEECSEEECC
T ss_pred hhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccc-------ccccccccccccccccccccccc
Confidence 344555666666666666555432 12 4555555555555554 33333333344555555555544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.26 E-value=1.8e-13 Score=120.09 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=13.9
Q ss_pred CCCCchhhhCCCCCCEEEccCCccc
Q 046908 117 LHVIPSFLLQHYHLIFLDLSNNKVV 141 (551)
Q Consensus 117 l~~l~~~~~~~~~L~~L~Ls~n~l~ 141 (551)
+..++..+..+++|++|+|++|.++
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~n~I~ 61 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALSTNNIE 61 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSEEEES
T ss_pred hhhhhhHHhcccccceeECcccCCC
Confidence 3445555555555556655555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.3e-08 Score=85.18 Aligned_cols=66 Identities=29% Similarity=0.243 Sum_probs=33.1
Q ss_pred hccccCceEecCCCcCccc--CCccccCCCCCcEEEcCCCCCCCcccccccCCCCCCEEeCCCCcCcc
Q 046908 352 SNLKYMAGLDLSSNELSGE--IPREIGQLQNIRALNLSNNFLSGAIPESFSNLKMTESLDLSHNRLSG 417 (551)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 417 (551)
..++.|++|+|++|+++.. ++..+..+++|+.|++++|.|+...+-.+.....|+.|++++|.+..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 3445555555555555432 12334455556666666666554333233333455666666665553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.5e-08 Score=82.56 Aligned_cols=88 Identities=22% Similarity=0.148 Sum_probs=59.7
Q ss_pred CccccccCCCceEEecCCcccccCChhhhhhhchhhHhhhccccCceEecCCCcCcccCCccccCCCCCcEEEcCCCCCC
Q 046908 313 PYQINELSNLHVLLLRGNSLQGHIPNELCHVSRFLHRFYSNLKYMAGLDLSSNELSGEIPREIGQLQNIRALNLSNNFLS 392 (551)
Q Consensus 313 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 392 (551)
+.....+++|++|++++|+++.. +.. ...+..+++|+.|+|++|.+++..+-.+.+...|++|++++|.+.
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l-~~~--------~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRL-DDM--------SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCC-SGG--------GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHHHHhCCCCCEeeCCCccccCC-chh--------HHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 33445678888888888888732 211 012467788889999999888544334444567899999999887
Q ss_pred Ccccc-------cccCCCCCCEEe
Q 046908 393 GAIPE-------SFSNLKMTESLD 409 (551)
Q Consensus 393 ~~~~~-------~~~~l~~L~~L~ 409 (551)
....+ .+..+|+|+.||
T Consensus 129 ~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 129 DTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cCcccchhHHHHHHHHCCCCCEEC
Confidence 55432 256788888875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.96 E-value=2.3e-06 Score=71.50 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=5.7
Q ss_pred CCCCCEEECcC
Q 046908 213 CVALDLFDLSN 223 (551)
Q Consensus 213 l~~L~~L~L~~ 223 (551)
.+.|+.|+|++
T Consensus 14 ~~~L~~L~L~~ 24 (167)
T d1pgva_ 14 DTDLKEVNINN 24 (167)
T ss_dssp CSSCCEEECTT
T ss_pred CCCCcEEEeCC
Confidence 44555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.93 E-value=2.1e-06 Score=71.73 Aligned_cols=38 Identities=24% Similarity=0.152 Sum_probs=16.0
Q ss_pred cccCceEecCCCcCccc----CCccccCCCCCcEEEcCCCCC
Q 046908 354 LKYMAGLDLSSNELSGE----IPREIGQLQNIRALNLSNNFL 391 (551)
Q Consensus 354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 391 (551)
.+.|+.|+|++|.+++. +..++...++|++|++++|.+
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 34444444444444321 112233344455555554443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.40 E-value=2.2e-05 Score=65.25 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred CCCCCCEEECcC-Cccccc----CCcccCCCCCCCEEecccccccCcCCCchhhHhhccCCCCCEEECCCCcccccCCCc
Q 046908 212 GCVALDLFDLSN-NNFFGQ----IFPKYMNLTHLHWLYLDNNHFSGKMDDANILVQLSQLKSLELIDIFENSLSGSLVSS 286 (551)
Q Consensus 212 ~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 286 (551)
+.+.|++|++++ +.++.. ...++...++|++|++++|.+.... ...+...+...++++.+++++|.+.......
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~-~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHH-HHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 445566666654 233321 2233445666777777766654321 1134445566667777777776665332211
Q ss_pred c-----cccccceeec--cccccccCccceeccCccccccCCCceEEecCCc
Q 046908 287 F-----NLSSVKHLYL--QKNAITGDNKFFGRIPYQINELSNLHVLLLRGNS 331 (551)
Q Consensus 287 ~-----~~~~L~~L~L--~~n~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 331 (551)
+ ..++|+.++| ++|.+.+ .....+...+...++|+.|+++.+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~--~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGN--NVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCH--HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcH--HHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 1 3445554333 3343431 1111233334455666666665554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.12 E-value=0.00013 Score=60.48 Aligned_cols=46 Identities=13% Similarity=0.004 Sum_probs=25.0
Q ss_pred CCCCCCCEEeccc-ccccCcCCCchhhHhhccCCCCCEEECCCCcccc
Q 046908 235 MNLTHLHWLYLDN-NHFSGKMDDANILVQLSQLKSLELIDIFENSLSG 281 (551)
Q Consensus 235 ~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 281 (551)
.+.+.|++|++++ +.++.. ....+...+...+.|++|++++|.++.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~-~~~~l~~al~~n~~L~~L~Ls~n~l~~ 60 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSND 60 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred hcCCCCcEEEcCCCCCCCHH-HHHHHHHHHhcCCccCeeeccCCcccH
Confidence 3456777777765 334321 111244445566667777777766654
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