Citrus Sinensis ID: 046918

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHccHHHHHcccccEEEEEcccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHcccccccHEEEEEEEcccccccEEEEEEccccccHHHHHHHHHccHHHHHHccEEEEEEEcccccHHHHHHHHc
Coil and Loop (DISEMBL)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKrssrdtnasqpvrtvrpsfiipsywfspgqlvrrHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMsgsesstvstggssqvptqlpIIISItgmggigkTTLARLIFNDNVVSAHFDKKIWVcvsepfddIRIAKAIL
Flexible Loop (DISEMBL)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVedaekrqmkeNAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQmkrssrdtnasqpvrtvrpsfiipsywfspgqlvRRHDIATkiknvdkkvdniVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSGSESstvstggssqvptQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIwvcvsepfdDIRIAKAIL
Low Complexity Region (SEG)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMsgsesstvstggssQVPTQLPiiisitgmggigkttLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Disordered region (IsUnstruct)
***VIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRK*****************TVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLL******************TQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIA****
Disordered Region (DISOPRED)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIR*********************PSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDN****************************KVAN****************SQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Disordered Region (DISEMBL)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQM************VRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMS**************VPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Disordered Region (DISPRO)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q7XA39	988	Putative disease resistan	N/A	no	0.848	0.215	0.314	1e-28
Q7XA40	992	Putative disease resistan	N/A	no	0.852	0.215	0.291	9e-27
Q7XBQ9	970	Disease resistance protei	N/A	no	0.844	0.218	0.293	9e-27
Q7XA42	979	Putative disease resistan	N/A	no	0.848	0.217	0.283	1e-25
Q8W4J9	908	Disease resistance protei	yes	no	0.912	0.252	0.281	4e-22
P59584	910	Disease resistance protei	no	no	0.900	0.248	0.278	4e-22
Q9FJK8	908	Probable disease resistan	no	no	0.872	0.241	0.277	5e-22
P0C8S1	906	Probable disease resistan	no	no	0.872	0.241	0.275	2e-19
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.912	0.254	0.272	2e-19
Q8W3K0	1138	Probable disease resistan	no	no	0.860	0.189	0.281	7e-19

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 136/267 (50%), Gaps = 54/267 (20%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  +  +LE L S + ++      LI G E+E E L   F  I+AV++DA+++Q+K+ 
Sbjct: 1   MAEAFLQVLLENLTSFIGDKLV----LIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDK 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEW-NTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWF 119
           A+  WL  L  A+Y+++D+L E  N AIR  Q +                        ++
Sbjct: 57  AIENWLQKLNSAAYEVDDILGECKNEAIRFEQSRLG----------------------FY 94

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG---------------TTSFLDESYEVR 164
            PG +  RH I  ++K + +K+D I  +   +                 T F+    +V 
Sbjct: 95  HPGIINFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGFVLTEPKVY 154

Query: 165 GREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV 224
           GR+  + ++  +L++           +  V  +LP+   I GMGG+GKTTLA++IFND  
Sbjct: 155 GRDKEEDEIVKILIN-----------NVNVAEELPVF-PIIGMGGLGKTTLAQMIFNDER 202

Query: 225 VSAHFDKKIWVCVSEPFDDIRIAKAIL 251
           V+ HF+ KIWVCVS+ FD+ R+ K I+
Sbjct: 203 VTKHFNPKIWVCVSDDFDEKRLIKTII 229

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  120 bits (301), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 135/264 (51%), Gaps = 50/264 (18%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  +  +L+ L   +      E+ L+ G E+E + L   F +I+AV+EDA+++Q+K  
Sbjct: 1   MAEAFLQVLLDNLTFFI----QGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYK 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
           A++ WL  L  A+Y+++D+LD+  T   + +     R                     + 
Sbjct: 57  AIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLGR---------------------YH 95

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG-------------TTSFLDESYEVRGRE 167
           P  +   + +  ++K + +K+D I  +   +               T F+    +V GRE
Sbjct: 96  PRTITFCYKVGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGFVLTEPKVYGRE 155

Query: 168 HLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSA 227
             + ++  +L++       +   S +VP  LPI+    GMGG+GKTTLA+++FND  ++ 
Sbjct: 156 KEEDEIVKILIN-------NVSYSEEVPV-LPIL----GMGGLGKTTLAQMVFNDQRITE 203

Query: 228 HFDKKIWVCVSEPFDDIRIAKAIL 251
           HF+ KIWVCVS+ FD+ R+ KAI+
Sbjct: 204 HFNLKIWVCVSDDFDEKRLIKAIV 227

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  120 bits (301), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 130/266 (48%), Gaps = 54/266 (20%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  +  +L+ L S L      E+ L+ G ++E + L   F  I+AV+EDA+++Q+   
Sbjct: 1   MAEAFIQVLLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNK 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            +  WL  L  A+Y+++D+LDE+ T   +       R                     + 
Sbjct: 57  PLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGR---------------------YH 95

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRGR 166
           P  +  RH +  ++  V KK+  I  +   +               T S L E  +V GR
Sbjct: 96  PKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVLTEP-QVYGR 154

Query: 167 EHLQIKVANLLMSG-SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           +  + ++  +L++  S++  +S             ++ I GMGG+GKTTLA+++FND  V
Sbjct: 155 DKEKDEIVKILINNVSDAQHLS-------------VLPILGMGGLGKTTLAQMVFNDQRV 201

Query: 226 SAHFDKKIWVCVSEPFDDIRIAKAIL 251
           + HF  KIW+CVSE FD+ R+ KAI+
Sbjct: 202 TEHFHSKIWICVSEDFDEKRLIKAIV 227

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 52/265 (19%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  +  +L+ L S L      E+ L+ G ++E + L   F  I+AV+EDA+++Q+ + 
Sbjct: 1   MAEAFIQVVLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDK 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            +  WL  L  A+Y+++D+LDE+ T   +       R                     + 
Sbjct: 57  PLENWLQKLNAATYEVDDILDEYKTKATRFLQSEYGR---------------------YH 95

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRGR 166
           P  +  RH +  ++  V KK++ I  +   +               T S L E  +V GR
Sbjct: 96  PKVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETGSVLTEP-QVYGR 154

Query: 167 EHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS 226
           +  + ++  +L        ++T   +Q  + LPI+    GMGG+GKTTL++++FND  V+
Sbjct: 155 DKEKDEIVKIL--------INTASDAQKLSVLPIL----GMGGLGKTTLSQMVFNDQRVT 202

Query: 227 AHFDKKIWVCVSEPFDDIRIAKAIL 251
             F  KIW+C+S+ F++ R+ KAI+
Sbjct: 203 ERFYPKIWICISDDFNEKRLIKAIV 227

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 134/259 (51%), Gaps = 30/259 (11%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  VS  LE+L  +L    + E   + G + +++ L R+   ++++++DA+ ++   +
Sbjct: 1   MAEAFVSFGLEKLWDLL----SRESERLQGIDGQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR +L+D+K   +D ED+++ +   + KL    S +     + VR +   F        
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESY--VLNKL----SGKGKGVKKHVRRL-ACF-------- 101

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLD--ESYEVRGREHLQIKVANLLM 178
              L  RH +A+ I+ + K++  ++ ++ ++G    +D   S  ++ R+ +Q ++     
Sbjct: 102 ---LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQRVQREIRQTYP 158

Query: 179 SGSESSTVSTGGSSQ------VPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKK 232
             SES  V    S +      V   +  ++SI GMGGIGKTTLAR +F+ ++V  HFD  
Sbjct: 159 DSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGF 218

Query: 233 IWVCVSEPFDDIRIAKAIL 251
            WVCVS+ F    + + IL
Sbjct: 219 AWVCVSQQFTQKHVWQRIL 237

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 134/262 (51%), Gaps = 36/262 (13%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  VS  LE+L  +L    + E   + G +E+++ L R+   ++++++DA+ ++   +
Sbjct: 1   MAEGFVSFGLEKLWDLL----SRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR +L+D+K   +D ED+++ +   + KL+ +      +  +  R              
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESY--VLNKLRGEGKGVKKHVRRLARF------------- 101

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLD--ESYEVRGREHLQIKVANLLM 178
              L  RH +A+ I+ + K++  ++ ++ ++G    +D   S  ++ R+ +Q ++     
Sbjct: 102 ---LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQRVQREIRQTYP 158

Query: 179 SGSESSTVSTGGSSQVPTQLPI---------IISITGMGGIGKTTLARLIFNDNVVSAHF 229
             SES  V   G  Q  T+L           ++SI GMGGIGKTTLAR +F+ ++V  HF
Sbjct: 159 DSSESDLV---GVEQSVTELVCHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHF 215

Query: 230 DKKIWVCVSEPFDDIRIAKAIL 251
           D   WVCVS+ F    + + IL
Sbjct: 216 DGFAWVCVSQQFTQKHVWQRIL 237

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 130/249 (52%), Gaps = 30/249 (12%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE  VS  LE+L  +L    + E   + G +E+++ L R+   ++++++DA+ ++   +
Sbjct: 1   MAEGFVSFGLEKLWDLL----SRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR +L+D+K   +D ED+++ +   + KL+ +      +  +  R              
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESY--VLNKLRGEGKGVKKHVRRLARF------------- 101

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLD--ESYEVRGREHLQIKVANLLM 178
              L  RH +A+ I+ + K++ +++ ++ ++G    +D   S  ++ R+ +Q ++     
Sbjct: 102 ---LTDRHKVASDIEGITKRISDVIGEMQSFGIQQIIDGVRSLSLQERQRVQREIRQTYP 158

Query: 179 SGSESSTVSTGGSSQ------VPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKK 232
             SES  V    S +      V   +  ++SI GMGGIGKTTLAR +F+ ++V  HFD  
Sbjct: 159 DSSESDLVGVEQSVEELVGHLVENDIYQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGF 218

Query: 233 IWVCVSEPF 241
            WVCVS+ F
Sbjct: 219 AWVCVSQQF 227

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 28/247 (11%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE +VS  +E+L  +L  ++A     ++G +E+V+ L R+   ++++++DA+ ++ +  
Sbjct: 1   MAEAVVSFGVEKLWELLSRESAR----LNGIDEQVDGLKRQLGRLQSLLKDADAKKNETE 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR +L+D+K   YD +D+++ +      L  +   ++    + VRT+   F        
Sbjct: 57  RVRNFLEDVKDIVYDADDIIESF------LLNELRGKEKGIKKQVRTL-ACF-------- 101

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSG 180
              LV R   A+ I+ + K++  ++  + + G     D        +  Q ++       
Sbjct: 102 ---LVDRRKFASDIEGITKRISEVIVGMQSLGIQHIADGGGRSLSLQERQREIRQTFSRN 158

Query: 181 SESSTVSTGGSSQ------VPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW 234
           SES  V    S +      V      ++S++GMGGIGKTTLAR +F+ ++V  HFD   W
Sbjct: 159 SESDLVGLDQSVEELVDHLVENDSVQVVSVSGMGGIGKTTLARQVFHHDIVRRHFDGFSW 218

Query: 235 VCVSEPF 241
           VCVS+ F
Sbjct: 219 VCVSQQF 225

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 134/257 (52%), Gaps = 28/257 (10%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE +VS  +++L ++L  ++      ++G +E+V+ L R+   ++++++DA+ ++   +
Sbjct: 1   MAEGVVSFGVQKLWALLNRESER----LNGIDEQVDGLKRQLRGLQSLLKDADAKKHGSD 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR +L+D+K   +D ED+++ +   + KL+             VR +   F        
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESY--VLNKLR----GEGKGVKNHVRRL-ACF-------- 101

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQIKVANLLMSG 180
              L  RH +A+ I+ + K++  ++ ++ + G    + +       + +Q ++     + 
Sbjct: 102 ---LTDRHKVASDIEGITKRISKVIGEMQSLGIQQQIIDGGRSLSLQDIQREIRQTFPNS 158

Query: 181 SESSTVSTGGSSQ--VPTQLPI----IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW 234
           SES  V    S +  V   + I    ++SI+GMGGIGKTTLAR IF+ ++V  HFD   W
Sbjct: 159 SESDLVGVEQSVEELVGPMVEIDNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAW 218

Query: 235 VCVSEPFDDIRIAKAIL 251
           VCVS+ F    + + IL
Sbjct: 219 VCVSQQFTQKHVWQRIL 235

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K0|DRL9_ARATH Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 33/249 (13%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MA  +VS  + +L  +L    + E  L  G E++V  L    +L+K+ ++DA+ ++    
Sbjct: 1   MAGELVSFAVNKLWDLL----SHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSA 56

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            VR  ++++K   YD EDVL+ +        +++    T +       R + I+P     
Sbjct: 57  LVRYCVEEIKDIVYDAEDVLETF--------VQKEKLGTTSGIRKHIKRLTCIVPD---- 104

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFL--DESYEVRGREHLQIKVANLLM 178
                 R +IA  I +V K++  ++RD+ ++G    +  D  + +R RE    ++     
Sbjct: 105 ------RREIALYIGHVSKRITRVIRDMQSFGVQQMIVDDYMHPLRNRER---EIRRTFP 155

Query: 179 SGSESSTVSTGGSSQVPTQLPI------IISITGMGGIGKTTLARLIFNDNVVSAHFDKK 232
             +ES  V+   + +      +      ++SITGMGG+GKTTLAR +FN ++V+  FDK 
Sbjct: 156 KDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKL 215

Query: 233 IWVCVSEPF 241
            WV VS+ F
Sbjct: 216 AWVSVSQDF 224

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.932	0.247	0.458	8e-53
224122696	906	cc-nbs-lrr resistance protein [Populus t	0.900	0.249	0.442	3e-49
224114848	571	cc-nbs resistance protein [Populus trich	0.932	0.409	0.424	2e-47
224115620	963	cc-nbs-lrr resistance protein [Populus t	0.928	0.241	0.439	2e-47
224101679	788	nbs-lrr resistance protein [Populus tric	0.900	0.286	0.439	5e-47
224115686	938	cc-nbs-lrr resistance protein [Populus t	0.916	0.245	0.429	5e-47
224110232	486	cc-nbs resistance protein [Populus trich	0.932	0.481	0.437	6e-47
224122720	746	cc-nbs-lrr resistance protein [Populus t	0.936	0.315	0.445	9e-47
224114836	477	cc-nbs resistance protein [Populus trich	0.900	0.473	0.422	2e-46
224114840	566	cc-nbs resistance protein [Populus trich	0.936	0.415	0.438	2e-46

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/266 (45%), Positives = 173/266 (65%), Gaps = 32/266 (12%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE ++S ILEQL +I+ +Q   EV L+ G +++V+ L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALLSPILEQLTTIVAQQVQEEVNLVVGVKKQVDKLKSNLLDIQSVLEDADRKQVKDK 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFI-IPSYWF 119
           AVR W+D LK A YDM+DVLDEW+TAI + +M+ +  +T++ Q +R    SF+  P + F
Sbjct: 61  AVRDWVDKLKDACYDMDDVLDEWSTAILRWKMEEAEENTHSRQKIRC---SFLGSPCFCF 117

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRG 165
           +  Q+VRR DIA KIK V +KVD+I ++   YG              TTSF+DES  V G
Sbjct: 118 N--QVVRRRDIALKIKEVSEKVDDIAKERAKYGFDLYKGTDELQRLTTTSFVDES-SVIG 174

Query: 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           R+  +  V + L++ S                   +IS+ G+GGIGKTTLA+L FND+ V
Sbjct: 175 RDGEKRNVVSKLLAESSHEARDVD-----------VISLVGLGGIGKTTLAQLAFNDSEV 223

Query: 226 SAHFDKKIWVCVSEPFDDIRIAKAIL 251
           +AHF+KKIWVCVSEPFD+IRIAKAIL
Sbjct: 224 TAHFEKKIWVCVSEPFDEIRIAKAIL 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 163/253 (64%), Gaps = 27/253 (10%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE ++S ILEQL +I+ +Q   EV L+ G +++ + L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALLSPILEQLTTIVAQQVQEEVNLVVGVKKQCDKLKSNLLDIQSVLEDADRKQVKDK 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFI-IPSYWF 119
           AVR WLD LK A YDM+DVLDEW+TAI + +M+ +  +T + Q +R    SF+  P + F
Sbjct: 61  AVRDWLDKLKDACYDMDDVLDEWSTAILRWKMEEAEENTRSRQKMRC---SFLRSPCFCF 117

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREHLQ-IKVANLLM 178
           +  Q+VRR DIA KIK V +KVD+I ++   YG   +       R  + LQ +   + + 
Sbjct: 118 N--QVVRRRDIALKIKEVCEKVDDIAKERAKYGFDPY-------RATDELQRLTSTSFVD 168

Query: 179 SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS 238
             SE+  V              +IS+ G+GG+GKTTLA+L FND  V+AHF+KKIWVCVS
Sbjct: 169 ESSEARDVD-------------VISLVGLGGMGKTTLAQLAFNDAEVTAHFEKKIWVCVS 215

Query: 239 EPFDDIRIAKAIL 251
           EPFD++RIAKAI+
Sbjct: 216 EPFDEVRIAKAII 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114848|ref|XP_002332297.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832459|gb|EEE70936.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 165/266 (62%), Gaps = 32/266 (12%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MA  ++S ILEQL  I+ ++   EV L+ G +++V+ L      + +V+EDA+++Q+K+ 
Sbjct: 1   MAAALLSPILEQLTRIVAQEVQEEVNLVVGVKKQVDKLKSNLLAMHSVLEDADRKQVKDE 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFI-IPSYWF 119
           AVR W+D LK   YDM+DVLDEW++AI + +M  +  +T++ Q +R    SF+  P + F
Sbjct: 61  AVRDWVDKLKDVCYDMDDVLDEWSSAILRWKMGDAEENTHSQQKIRC---SFLGFPCFCF 117

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRG 165
           +  Q+VRR DIA KIK V +K+D I ++   YG              +TS +DES  V G
Sbjct: 118 N--QVVRRRDIALKIKEVCEKLDEIAKEKAMYGFELYRATDELQRITSTSLVDESI-VSG 174

Query: 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           R+  +  V + L+           G S+        IS+ G+GGIGKTTLA+L FND  V
Sbjct: 175 RDDEREAVVSKLL-----------GESRQEAWDVYAISLVGLGGIGKTTLAQLAFNDAEV 223

Query: 226 SAHFDKKIWVCVSEPFDDIRIAKAIL 251
           +AHF+KKIWVCVS+PFD++RIAKAIL
Sbjct: 224 TAHFEKKIWVCVSDPFDEVRIAKAIL 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115620|ref|XP_002332101.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874921|gb|EEF12052.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/266 (43%), Positives = 164/266 (61%), Gaps = 33/266 (12%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MA+ +VS +LEQL+SI++++   EVRL+ G E EV+ L   F  I+A+  DAE+RQ+K+ 
Sbjct: 1   MADALVSVVLEQLSSIIIQEVQREVRLVVGVENEVKKLTSNFQAIQAMFADAEERQLKDQ 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            V+ WLD LK  SYDM+DVLDEW T I K Q K +      ++ V     SF+I S  F 
Sbjct: 61  LVKHWLDQLKDVSYDMDDVLDEWGTEIAKSQSKVNEHPRKNTRKV----CSFMIFSC-FR 115

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAY---------------GTTSFLDESYEVRG 165
             ++  R DIA KIK +++++D I  + N +                T SF+D + EV+G
Sbjct: 116 FREVGLRRDIALKIKELNERIDGIAIEKNRFHFKSSEVVIKQHDHRKTVSFIDAA-EVKG 174

Query: 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           RE  + +V N+L++           SSQ P      IS+ GMGGIGKTTLA+L++ND+ V
Sbjct: 175 RETDKGRVRNMLLT----------ESSQGPALR--TISLVGMGGIGKTTLAQLVYNDHEV 222

Query: 226 SAHFDKKIWVCVSEPFDDIRIAKAIL 251
             HFDK+IWVCVS+PFD+ +IAKAIL
Sbjct: 223 EIHFDKRIWVCVSDPFDETKIAKAIL 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101679|ref|XP_002334255.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222870330|gb|EEF07461.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/266 (43%), Positives = 158/266 (59%), Gaps = 40/266 (15%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MA+ +VS +LE+L+SI+ E+   +VRL  G + EVE L   F  I+AV  DAE+RQ+K+ 
Sbjct: 1   MADALVSVVLERLSSIVSEKVGQKVRLFVGVKNEVEKLTSSFRAIQAVFADAEERQLKDQ 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
            V+ WLD LK  SYDM+DVLDEW+TAI KLQ K +          R V    I   + F 
Sbjct: 61  FVKHWLDQLKDVSYDMDDVLDEWDTAIAKLQSKNT----------RKVCSFMIFSCFHFR 110

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG---------------TTSFLDESYEVRG 165
              L  RH +A KIK +++++D IV + N +                T S +D   EV+G
Sbjct: 111 EVGL--RHRVAYKIKELNERIDGIVVEKNRFHFKLLEAGIKQLEHHETASVIDVK-EVKG 167

Query: 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           RE  +++V   L+S           SSQ P      IS+ GMGGIGKTTLA+L+FND+VV
Sbjct: 168 REKDKVRVIKTLLS----------ESSQGPALR--TISLVGMGGIGKTTLAKLVFNDHVV 215

Query: 226 SAHFDKKIWVCVSEPFDDIRIAKAIL 251
             HF+++IWVCVS+PFD+ RIAK IL
Sbjct: 216 KTHFNRRIWVCVSDPFDETRIAKEIL 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115686|ref|XP_002332117.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874937|gb|EEF12068.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/268 (42%), Positives = 163/268 (60%), Gaps = 38/268 (14%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MA+ +V  ++EQL+ I  ++   EVRL+ G + EV+ L   F  I+AV+ DAE+R++K+ 
Sbjct: 1   MADALVFVVMEQLSLIFAQEVQQEVRLVVGVKNEVQKLTNNFQTIQAVLADAEERELKDG 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRP--SFIIPSYW 118
           +++ W+D LK  SYDM+DVLDEW TAI K QMK +        P +T R   S I     
Sbjct: 61  SIKRWIDQLKGVSYDMDDVLDEWGTAIAKSQMKVN------EHPRKTARKVCSMIFSCLC 114

Query: 119 FSPGQLVRRHDIATKIKNVDKKVDNIV---------------RDINAYGTTSFLDESYEV 163
           F    L  R DIA KIK +++++D IV               + +    TTS +D + EV
Sbjct: 115 FREVGL--RRDIAHKIKELNERIDGIVIEKDRFHFKSSEVGIKQLEHQKTTSVIDAA-EV 171

Query: 164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN 223
           +GRE+ + +V N+L+S           SSQ P      IS+ GMGGIGKTTLA+L++ND+
Sbjct: 172 KGRENDKDRVKNMLLS----------ESSQGPALR--TISLVGMGGIGKTTLAKLVYNDH 219

Query: 224 VVSAHFDKKIWVCVSEPFDDIRIAKAIL 251
            V+ HFDK+IWVCVS+PF++I IAKAIL
Sbjct: 220 DVTTHFDKRIWVCVSDPFNEITIAKAIL 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110232|ref|XP_002333124.1| cc-nbs resistance protein [Populus trichocarpa] gi|222834935|gb|EEE73384.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 164/265 (61%), Gaps = 31/265 (11%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE ++S ILEQL +++ +Q   EV L+ G +++V+ L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALLSPILEQLTTVVAQQVQEEVSLVGGVKKQVDKLKSNLIAIQSVLEDADRKQVKDK 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
           AVR W+D LK   YDM+DVLDEW++AI   +M+ +  +T + Q +R    SF + S  F 
Sbjct: 61  AVRDWVDKLKDVCYDMDDVLDEWSSAILTWKMEEAEENTRSLQKMRC---SF-LGSPCFC 116

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRGR 166
             Q+ RR DIA KIK V +KVD+I +    YG              +TS +DES  V GR
Sbjct: 117 LNQVGRRRDIALKIKEVCEKVDDIAKARAMYGFELYRATDELQRITSTSLVDESI-VTGR 175

Query: 167 EHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS 226
           +  +  V + L+  S    +   G  +V       ISI GMGGIGKTTLA+L FND  V+
Sbjct: 176 DDEREAVVSKLLGES----IQEAGDVEV-------ISIVGMGGIGKTTLAQLAFNDAEVT 224

Query: 227 AHFDKKIWVCVSEPFDDIRIAKAIL 251
           AHF+ KIWVCVS+PFD++RI KAIL
Sbjct: 225 AHFE-KIWVCVSDPFDEVRIGKAIL 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122720|ref|XP_002318909.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859582|gb|EEE97129.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/265 (44%), Positives = 165/265 (62%), Gaps = 30/265 (11%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE ++S ILEQL  I+ +Q   EV L+ G +++V+ L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALLSPILEQLTRIVDQQVQEEVNLVVGVKKQVDKLKSNRVSIQSVLEDADRKQVKDE 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFS 120
           AV+ WLD LK   Y M+DVLDEW+TAI + +M+ +  +T + Q +R    SF + S    
Sbjct: 61  AVKGWLDKLKDVCYHMDDVLDEWSTAILRWKMEEAEENTRSRQKMRC---SF-LKSPCSC 116

Query: 121 PGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRGR 166
             Q+VRR DIA KIK V +KVD+I ++   Y               +TSF+DES  V GR
Sbjct: 117 LNQVVRRRDIALKIKEVCEKVDDIAKERATYAFDPYRATDELQRLTSTSFVDES-SVIGR 175

Query: 167 EHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS 226
           +  +  V + L+          G SSQ    +  +IS+ G+GGIGKTTLA+L FND  V+
Sbjct: 176 DVEKTTVISKLV----------GESSQEARDVD-VISLVGLGGIGKTTLAQLAFNDAEVT 224

Query: 227 AHFDKKIWVCVSEPFDDIRIAKAIL 251
            HF+KKIWVCVSEPFD +RIAKAIL
Sbjct: 225 THFEKKIWVCVSEPFDQVRIAKAIL 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114836|ref|XP_002332294.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832456|gb|EEE70933.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 163/258 (63%), Gaps = 32/258 (12%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE ++S ILEQL++++ +Q   EV L+ G +++V+ L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALLSPILEQLSTVVAQQVQEEVNLVGGVKKQVDKLKSNLLAIQSVLEDADRKQVKDK 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFI-IPSYWF 119
           AVR W D LK   YDM+DVLDEW+TAI + +M  +  +T++ Q +R    SF+  P + F
Sbjct: 61  AVRDWADKLKDVCYDMDDVLDEWSTAILRWKMGEAEENTHSQQKMRC---SFLGSPCFCF 117

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRG 165
           +  Q+ RR DIA KIK V +KVD I ++   +G              +TS +DES  VRG
Sbjct: 118 N--QVARRRDIALKIKEVCEKVDEIAKERAMFGFELYRATDELQRITSTSLVDESI-VRG 174

Query: 166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV 225
           R+  +  + + L+           G S+   +   +IS+ GMGGIGKTTLA+L FND+ V
Sbjct: 175 RDDERESLVSKLL-----------GESRQEARDVEVISLVGMGGIGKTTLAQLAFNDDEV 223

Query: 226 SAHFDKKIWVCVSEPFDD 243
           +AHF+KKIWVCVS+PFD+
Sbjct: 224 TAHFEKKIWVCVSDPFDE 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114840|ref|XP_002332295.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832457|gb|EEE70934.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/267 (43%), Positives = 163/267 (61%), Gaps = 32/267 (11%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
           MAE +VS ILEQL +I+ +Q   EV L+ G ++ V+ L      I++V+EDA+++Q+K+ 
Sbjct: 1   MAEALVSPILEQLTTIVAQQVQEEVNLVVGVKKHVDKLKSNLLAIQSVLEDADRKQVKDK 60

Query: 61  AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFI-IPSYWF 119
           AVR WLD LK   YD++DVLDEW+T I   +M  + + T++ Q +R    SF   P + F
Sbjct: 61  AVRDWLDKLKDVCYDIDDVLDEWSTEILTWKMGDAEQYTDSLQKMRC---SFQRSPCFCF 117

Query: 120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG---------------TTSFLDESYEVR 164
           +  Q+VRR DIA  IK V +KVD I ++   +G               +TSF DE   V 
Sbjct: 118 N--QVVRRRDIALNIKEVCQKVDEIAKERAMFGFELYRATDEQQRRPTSTSFFDEYSSVI 175

Query: 165 GREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV 224
           GR+  +  V + L+          G SSQ    +  +IS+ G+GGIGKTTLA+L FND  
Sbjct: 176 GRDDEREAVVSKLL----------GESSQEARDVD-VISLVGLGGIGKTTLAQLAFNDAE 224

Query: 225 VSAHFDKKIWVCVSEPFDDIRIAKAIL 251
           V+AHF+KKIWV VSEPFD++ IAKAIL
Sbjct: 225 VTAHFEKKIWVRVSEPFDEVGIAKAIL 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.338	0.093	0.285	4.1e-10
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.346	0.095	0.279	4.8e-10
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.338	0.094	0.285	1.1e-08
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.354	0.078	0.291	3.5e-08
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.370	0.108	0.32	4.4e-07
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.673	0.160	0.248	8.8e-07
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.302	0.089	0.262	4.4e-06
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.306	0.084	0.271	5.7e-06
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.358	0.099	0.257	1.4e-05
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.306	0.085	0.269	2.6e-05

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
 Identities = 26/91 (28%), Positives = 55/91 (60%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MAE  VS  LE+L  +L    + E   + G +E+++ L R+   ++++++DA+ ++   +
Sbjct:     1 MAEGFVSFGLEKLWDLL----SRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query:    61 AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQ 91
              VR +L+D+K   +D ED+++ +   + KL+
Sbjct:    57 RVRNFLEDVKDLVFDAEDIIESY--VLNKLR 85

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
 Identities = 26/93 (27%), Positives = 54/93 (58%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MAE  VS  LE+L  +L    + E   + G + +++ L R+   ++++++DA+ ++   +
Sbjct:     1 MAEAFVSFGLEKLWDLL----SRESERLQGIDGQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query:    61 AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMK 93
              VR +L+D+K   +D ED+++ +   + KL  K
Sbjct:    57 RVRNFLEDVKDLVFDAEDIIESY--VLNKLSGK 87

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 26/91 (28%), Positives = 59/91 (64%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MAE +VS  +++L ++L  ++    RL +G +E+V+ L R+   ++++++DA+ ++   +
Sbjct:     1 MAEGVVSFGVQKLWALLNRESE---RL-NGIDEQVDGLKRQLRGLQSLLKDADAKKHGSD 56

Query:    61 AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQ 91
              VR +L+D+K   +D ED+++ +   + KL+
Sbjct:    57 RVRNFLEDVKDLVFDAEDIIESY--VLNKLR 85

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
 Identities = 28/96 (29%), Positives = 53/96 (55%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MA  +VS  + +L  +L    + E  L  G E++V  L    +L+K+ ++DA+ ++    
Sbjct:     1 MAGELVSFAVNKLWDLL----SHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSA 56

Query:    61 AVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSS 96
              VR  ++++K   YD EDVL+   T ++K ++  +S
Sbjct:    57 LVRYCVEEIKDIVYDAEDVLE---TFVQKEKLGTTS 89

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 32/100 (32%), Positives = 55/100 (55%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MAE IVS  +++L  +L+E    E   + G  ++V+ L      +   ++DA+++Q +  
Sbjct:     1 MAEAIVSVTVQKLGQLLLE----EPLFLFGIGDQVKQLQDELKRLNCFLKDADEKQHESE 56

Query:    61 AVRVWLDDLKHASYDMEDVLDEW--NTAIRKLQ-MKRSSR 97
              VR W+  ++ ASYD ED+L+ +      RK + MKR  R
Sbjct:    57 RVRNWVAGIREASYDAEDILEAFFLKAESRKQKGMKRVLR 96

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
 Identities = 48/193 (24%), Positives = 85/193 (44%)

Query:     1 MAEVIVSTILEQLASILV-EQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKE 59
             + E+ ++  L+ L   LV E   +  +     E  +E L      I AV+ DAE++Q+  
Sbjct:     4 IGEMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQITN 63

Query:    60 NAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWF 119
               V  W+++L+   Y  ED LD+  T   +L +   S  +N    +R +R    +    F
Sbjct:    64 PVVEKWVNELRDVVYHAEDALDDIATEALRLNIGAESSSSNR---LRQLRGRMSLGD--F 118

Query:   120 SPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG--------------TTSFLDESYEVRG 165
               G     H + T+++ V  +++ +    N  G              TTS +DES EV G
Sbjct:   119 LDGN--SEH-LETRLEKVTIRLERLASQRNILGLKELTAMIPKQRLPTTSLVDES-EVFG 174

Query:   166 REHLQIKVANLLM 178
             R+  + ++   L+
Sbjct:   175 RDDDKDEIMRFLI 187

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
 Identities = 21/80 (26%), Positives = 45/80 (56%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             M + +V+  LE+  +IL E+     R +S   +++E+L      +++ ++DAE+++    
Sbjct:     1 MVDAVVTVFLEKTLNILEEKG----RTVSDYRKQLEDLQSELKYMQSFLKDAERQKRTNE 56

Query:    61 AVRVWLDDLKHASYDMEDVL 80
              +R  + DL+   Y+ ED+L
Sbjct:    57 TLRTLVADLRELVYEAEDIL 76

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             M + IVS  +E+L  +L +    E     G EE++  L     ++ A + DA+ ++    
Sbjct:     6 MVDSIVSFGVEKLWKLLSQ----EYERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRA 61

Query:    61 AVRVWLDDLKHASYDMEDVLD 81
               R  L+++K  +YD ED+++
Sbjct:    62 LARNCLEEIKEITYDAEDIIE 82

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
 Identities = 26/101 (25%), Positives = 54/101 (53%)

Query:     1 MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKEN 60
             MA  +VS  +++L  +L +    E     G E++V  L R  +L+ + ++DA+ ++    
Sbjct:     1 MAGELVSFGIKKLWDLLSQ----ECEQFQGVEDQVTGLKRDLNLLSSFLKDADAKKHTTA 56

Query:    61 AVRVWLDDLKHASYDMEDVLDE-------WNTAIRKLQMKR 94
              VR  ++++K   YD ED+++        W T+  K++++R
Sbjct:    57 VVRNVVEEIKEIVYDAEDIIETYLLKEKLWKTSGIKMRIRR 97

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 21/78 (26%), Positives = 44/78 (56%)

Query:    17 LVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDM 76
             L ++ + E     G E++V  L    +L+K+ ++DA+ ++     VR  ++++K   YD 
Sbjct:    11 LWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDT 70

Query:    77 EDVLDEWNTAIRKLQMKR 94
             ED+++ +     K++MKR
Sbjct:    71 EDIIETFILK-EKVEMKR 87

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001317 cc-nbs-lrr resistance protein (945 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-14

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query: 199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAIL 251
             ++ I GMGG+GKTTLA+ I+ND+ V  HFD   WV VS+ + + R+ K IL
Sbjct: 19  LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDIL 71

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.94
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.04
cd01128	249	rho_factor Transcription termination factor rho is	98.74
PRK09376	416	rho transcription termination factor Rho; Provisio	98.73
TIGR00767	415	rho transcription termination factor Rho. Members	98.31
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.24
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.13
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.01
PTZ00202	550	tuzin; Provisional	98.01
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.0
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.95
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.89
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.59
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.56
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.54
PRK06696	223	uridine kinase; Validated	97.52
KOG2028	554	consensus ATPase related to the helicase subunit o	97.5
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.48
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.46
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.43
PRK07667	193	uridine kinase; Provisional	97.31
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.29
PRK13342	413	recombination factor protein RarA; Reviewed	97.28
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.26
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.21
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.2
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.18
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.16
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.11
PF13173	128	AAA_14: AAA domain	97.09
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.06
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.98
PRK06547	172	hypothetical protein; Provisional	96.94
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.92
CHL00095	821	clpC Clp protease ATP binding subunit	96.92
PRK12402	337	replication factor C small subunit 2; Reviewed	96.91
PRK15455	644	PrkA family serine protein kinase; Provisional	96.91
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.91
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.83
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.82
PRK13341	725	recombination factor protein RarA/unknown domain f	96.8
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.8
PRK04195	482	replication factor C large subunit; Provisional	96.79
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.78
smart00382	148	AAA ATPases associated with a variety of cellular	96.77
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.76
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.72
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.71
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.7
PRK05541	176	adenylylsulfate kinase; Provisional	96.7
PRK10865	857	protein disaggregation chaperone; Provisional	96.69
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.69
PHA00729	226	NTP-binding motif containing protein	96.68
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.66
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.66
PRK06893	229	DNA replication initiation factor; Validated	96.65
PHA02544	316	44 clamp loader, small subunit; Provisional	96.62
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.61
PLN03025	319	replication factor C subunit; Provisional	96.61
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.61
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.6
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.58
PRK14738	206	gmk guanylate kinase; Provisional	96.56
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.56
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.56
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.54
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.54
PF00004	132	AAA: ATPase family associated with various cellula	96.53
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.53
PRK05439	311	pantothenate kinase; Provisional	96.5
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.49
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.48
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.48
PRK03846	198	adenylylsulfate kinase; Provisional	96.48
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.47
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.45
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.44
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.43
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.41
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.4
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.39
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	96.36
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.35
PRK08727	233	hypothetical protein; Validated	96.35
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.35
PLN02318	656	phosphoribulokinase/uridine kinase	96.34
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.34
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.34
PRK13531	498	regulatory ATPase RavA; Provisional	96.33
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	96.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.31
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.3
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.28
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.26
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.25
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.25
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.25
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.25
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.24
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.23
PRK08084	235	DNA replication initiation factor; Provisional	96.23
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.23
PRK09087	226	hypothetical protein; Validated	96.22
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.21
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.21
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.2
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.19
PRK04841	903	transcriptional regulator MalT; Provisional	96.15
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.15
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.15
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.12
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.12
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.11
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.11
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.11
PRK10865	857	protein disaggregation chaperone; Provisional	96.09
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.09
PRK10536	262	hypothetical protein; Provisional	96.09
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.09
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.08
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.08
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.08
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.07
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.07
PLN02796	347	D-glycerate 3-kinase	96.06
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.06
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.05
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.05
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.04
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.04
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.04
PRK12608	380	transcription termination factor Rho; Provisional	96.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.03
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.02
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.02
PRK06620	214	hypothetical protein; Validated	96.02
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.01
PTZ00112	1164	origin recognition complex 1 protein; Provisional	96.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.0
PRK12377	248	putative replication protein; Provisional	95.99
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.99
CHL00181	287	cbbX CbbX; Provisional	95.99
cd03116	159	MobB Molybdenum is an essential trace element in t	95.97
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.97
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.96
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.96
PLN02348	395	phosphoribulokinase	95.95
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.95
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.95
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.95
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.95
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.94
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.92
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.91
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.91
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.9
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.9
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.89
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.89
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.88
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.88
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.87
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	95.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.87
PRK04301	317	radA DNA repair and recombination protein RadA; Va	95.86
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.86
PRK10416	318	signal recognition particle-docking protein FtsY;	95.85
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.84
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.83
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.82
PRK05642	234	DNA replication initiation factor; Validated	95.81
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.81
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	95.81
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.81
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.8
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.8
PRK10908	222	cell division protein FtsE; Provisional	95.79
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.79
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.77
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.77
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	95.76
cd03114	148	ArgK-like The function of this protein family is u	95.76
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.76
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.76
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.75
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.75
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	95.74
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.73
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.73
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.73
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.73
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.73
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.72
cd03246	173	ABCC_Protease_Secretion This family represents the	95.72
PF07726	131	AAA_3: ATPase family associated with various cellu	95.72
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.71
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.71
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.71
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.71
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.7
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.7
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.7
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.69
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.69
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.69
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.68
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.68
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.68
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.67
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	95.67
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.67
COG3899	849	Predicted ATPase [General function prediction only	95.67
COG0410	237	LivF ABC-type branched-chain amino acid transport	95.66
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.66
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.66
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.65
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.65
PRK08116	268	hypothetical protein; Validated	95.64
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.64
PLN02200	234	adenylate kinase family protein	95.64
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.64
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.64
PRK13946	184	shikimate kinase; Provisional	95.64
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.64
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.63
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.63
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.63
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.62
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.62
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.62
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.62
PLN03046	460	D-glycerate 3-kinase; Provisional	95.62
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.61
PLN02924	220	thymidylate kinase	95.61
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	95.61
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.6
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.6
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.6
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	95.59
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.59
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.59
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.59
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.59
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	95.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.58
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.58
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.58
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.58
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.58
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	95.58
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.57
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	95.57
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.56
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.56
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.56
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.56
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	95.56
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.56
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.56
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.55
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.55
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.55
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.55
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.55
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.54
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.54
PRK07429	327	phosphoribulokinase; Provisional	95.53
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.53
PRK13948	182	shikimate kinase; Provisional	95.52
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	95.52
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.51
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.5
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.5
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.49
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.49
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.49
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.48
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	95.48
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.48
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	95.48
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.48
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.47
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.47
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.47
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.47
COG4559	259	ABC-type hemin transport system, ATPase component	95.46
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	95.46
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	95.46
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	95.46
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.45
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	95.45
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	95.45
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	95.45
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.45
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	95.45
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	95.44
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	95.44
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.44
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.44
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.43
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	95.43
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	95.43
PF13245	76	AAA_19: Part of AAA domain	95.43
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.43
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.42
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	95.42
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.42
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	95.42
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	95.41
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	95.41
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.41
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.41
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	95.4
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	95.39
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	95.39
cd00983	325	recA RecA is a bacterial enzyme which has roles in	95.39
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	95.39
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	95.38
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.38
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	95.37
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	95.37
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.36
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	95.36
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	95.36
PLN02165	334	adenylate isopentenyltransferase	95.36
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.36
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	95.35
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.35
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	95.34
PRK09183	259	transposase/IS protein; Provisional	95.34
PRK14974	336	cell division protein FtsY; Provisional	95.34
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	95.33
PRK13546	264	teichoic acids export protein ATP-binding subunit;	95.33
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.32
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	95.32
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.32
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.32
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	95.32
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	95.3
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	95.29
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.29
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.28
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	95.28
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	95.28
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.27
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	95.26
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.26
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	95.26
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	95.26
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	95.25
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.25
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	95.25
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.25
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.25
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	95.24
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	95.24
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.24
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.24
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	95.23
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.23
PRK08181	269	transposase; Validated	95.23
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.23
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	95.23
PRK03695	248	vitamin B12-transporter ATPase; Provisional	95.22
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.22
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.22
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.22
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.22
PRK07952	244	DNA replication protein DnaC; Validated	95.21
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.21
PRK09984	262	phosphonate/organophosphate ester transporter subu	95.21
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	95.21
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.21
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	95.21
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.21
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.2
CHL00095	821	clpC Clp protease ATP binding subunit	95.2
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.2
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	95.2
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	95.19
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.19
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	95.19
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	95.19
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	95.18
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	95.18
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.17
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	95.16
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	95.15
COG1123	539	ATPase components of various ABC-type transport sy	95.15
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.14
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.14
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	95.14
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	95.13
PRK10867	433	signal recognition particle protein; Provisional	95.13
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	95.13
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.11
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.11
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.11
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	95.11
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.1
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.1
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.1
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	95.09
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	95.09
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	95.09
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.08
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	95.07
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.07
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.06
PRK06067	234	flagellar accessory protein FlaH; Validated	95.06
PTZ00035	337	Rad51 protein; Provisional	95.06
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	95.05
PRK06526	254	transposase; Provisional	95.05
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	95.04
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	95.03
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	95.02
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.02
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.02
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	95.02
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	95.02
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	95.02
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.01
PRK06835	329	DNA replication protein DnaC; Validated	95.01
PRK13537	306	nodulation ABC transporter NodI; Provisional	95.0
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	95.0
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	94.99
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	94.99
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	94.99
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.98
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	94.96
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.95
cd02034	116	CooC The accessory protein CooC, which contains a	94.95
PRK06921	266	hypothetical protein; Provisional	94.94
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	94.93
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.93
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	94.92
PRK00771	437	signal recognition particle protein Srp54; Provisi	94.92
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	94.92
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	94.91
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	94.9
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	94.9
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.89
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.88
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	94.87
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	94.87
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	94.86
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	94.86
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	94.85
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	94.85
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	94.84
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	94.83
PLN02840	421	tRNA dimethylallyltransferase	94.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	94.83
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.83
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	94.83
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	94.82
PRK09354	349	recA recombinase A; Provisional	94.82
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.82
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	94.82
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	94.8
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	94.8
PRK13536	340	nodulation factor exporter subunit NodI; Provision	94.8
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.79
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	94.79
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	94.78
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	94.77
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	94.76
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.74
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	94.73
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	94.73
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	94.73
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.73
PTZ00133	182	ADP-ribosylation factor; Provisional	94.73
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	94.72
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	94.72
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	94.71
cd03299	235	ABC_ModC_like Archeal protein closely related to M	94.71
PRK15064	530	ABC transporter ATP-binding protein; Provisional	94.71
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	94.71
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	94.7
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	94.69
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	94.69
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.69
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	94.69
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	94.68
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	94.67
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	94.67
PRK10938	490	putative molybdenum transport ATP-binding protein	94.67
smart00178	184	SAR Sar1p-like members of the Ras-family of small	94.67

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-26  Score=219.77  Aligned_cols=217  Identities=26%  Similarity=0.354  Sum_probs=158.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhchhhHHHh
Q 046918            3 EVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDE   82 (251)
Q Consensus         3 ~~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~l~~~a~d~eD~ld~   82 (251)
                      ++.++..++++.+.    +.+++..+.+.+..+..|+++|..++.++++++..+.....+..|...+++++|++||+++.
T Consensus         2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~   77 (889)
T KOG4658|consen    2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL   77 (889)
T ss_pred             CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777776    57778889999999999999999999999999999887899999999999999999999999


Q ss_pred             hhHHHHHHHHhhhcCCCCCCCCccccccccccCCCccCCCcccchhhHHHHHHHHHHHHHHHHHhhhhcC----------
Q 046918           83 WNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG----------  152 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~----------  152 (251)
                      |..+....+..+....  ........+      .+.++.......+.+++++-++.+.++.+.... .+.          
T Consensus        78 ~~v~~~~~~~~~~l~~--~~~~~~~~c------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~~~~~~~  148 (889)
T KOG4658|consen   78 FLVEEIERKANDLLST--RSVERQRLC------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVVGESLDPRE  148 (889)
T ss_pred             HHHHHHHHHHhHHhhh--hHHHHHHHh------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecccccccchh
Confidence            9977665433322000  000000111      001122223333444455554444444443211 010          


Q ss_pred             ---CCcccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc-cccC
Q 046918          153 ---TTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV-VSAH  228 (251)
Q Consensus       153 ---~~~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~-v~~~  228 (251)
                         +.+..+.. . +|.+..++++++.|.+++                 ..++||+||||+||||||+.|||+.. ++.+
T Consensus       149 ~~e~~~~~~~~-~-VG~e~~~~kl~~~L~~d~-----------------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~  209 (889)
T KOG4658|consen  149 KVETRPIQSES-D-VGLETMLEKLWNRLMEDD-----------------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNH  209 (889)
T ss_pred             hcccCCCCccc-c-ccHHHHHHHHHHHhccCC-----------------CCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence               11222222 3 999999999999999877                 49999999999999999999999987 9999


Q ss_pred             CCceEEEEeCCCCCHHHHHHHhC
Q 046918          229 FDKKIWVCVSEPFDDIRIAKAIL  251 (251)
Q Consensus       229 Fd~~~wV~Vs~~~~~~~i~~~Il  251 (251)
                      ||.+|||+||++|+..+|+++|+
T Consensus       210 Fd~~iWV~VSk~f~~~~iq~~Il  232 (889)
T KOG4658|consen  210 FDGVIWVVVSKEFTTRKIQQTIL  232 (889)
T ss_pred             CceEEEEEEcccccHHhHHHHHH
Confidence            99999999999999999999985

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.50  E-value=3.5e-14  Score=120.74  Aligned_cols=70  Identities=37%  Similarity=0.535  Sum_probs=62.1

Q ss_pred             cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046918          166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIR  245 (251)
Q Consensus       166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~  245 (251)
                      ||.++++|.++|....               .+.++|+|+||||+||||||+.+|++..++.+|+.++||.+++.++...
T Consensus         1 re~~~~~l~~~L~~~~---------------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~   65 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNS---------------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ   65 (287)
T ss_dssp             -HHHHHHHHHHHHTTT---------------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred             CHHHHHHHHHHhhCCC---------------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence            6789999999998854               4599999999999999999999999877999999999999999999888


Q ss_pred             HHHHh
Q 046918          246 IAKAI  250 (251)
Q Consensus       246 i~~~I  250 (251)
                      ++++|
T Consensus        66 ~~~~i   70 (287)
T PF00931_consen   66 LLEQI   70 (287)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            88776

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.04  E-value=6.5e-10  Score=111.02  Aligned_cols=63  Identities=32%  Similarity=0.431  Sum_probs=52.7

Q ss_pred             ccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046918          156 FLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWV  235 (251)
Q Consensus       156 ~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV  235 (251)
                      ..+.. .++|++...+++..+|.-..               .++++|+||||||+||||||+.+|+  ++..+|+..+|+
T Consensus       180 ~~~~~-~~vG~~~~l~~l~~lL~l~~---------------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv  241 (1153)
T PLN03210        180 SNDFE-DFVGIEDHIAKMSSLLHLES---------------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFI  241 (1153)
T ss_pred             Ccccc-cccchHHHHHHHHHHHcccc---------------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEe
Confidence            33445 79999999999998885433               4589999999999999999999999  578889988876


Q ss_pred             E
Q 046918          236 C  236 (251)
Q Consensus       236 ~  236 (251)
                      .
T Consensus       242 ~  242 (1153)
T PLN03210        242 D  242 (1153)
T ss_pred             e
Confidence            3

syringae 6; Provisional

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.74  E-value=1.9e-08  Score=83.74  Aligned_cols=52  Identities=19%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC--CCHHHHHHHh
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP--FDDIRIAKAI  250 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~--~~~~~i~~~I  250 (251)
                      .-..++|+|++|+|||||++.+|++.... +|+.++||++++.  +++.+++++|
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I   68 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV   68 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence            35689999999999999999999975544 8999999998887  8999999886

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.73  E-value=1.1e-08  Score=89.26  Aligned_cols=52  Identities=17%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC--CHHHHHHHhC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF--DDIRIAKAIL  251 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~--~~~~i~~~Il  251 (251)
                      -.-..|+|++|+||||||+.||++.... |||+++||++++.+  ++.+++++|+
T Consensus       169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl  222 (416)
T PRK09376        169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK  222 (416)
T ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence            4567899999999999999999975544 89999999999998  8999998874

>TIGR00767 rho transcription termination factor Rho

Probab=98.31  E-value=1.1e-06  Score=77.29  Aligned_cols=52  Identities=15%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC--CCHHHHHHHhC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP--FDDIRIAKAIL  251 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~--~~~~~i~~~Il  251 (251)
                      -..++|+|++|+|||||++.|++.-.. ++|+..+||.+++.  +++.+++++|+
T Consensus       168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIl  221 (415)
T TIGR00767       168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVK  221 (415)
T ss_pred             CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhh
Confidence            557899999999999999999996433 37999999999976  89999998873

Members of this family differ in the specificity of RNA binding.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.24  E-value=1.2e-06  Score=69.30  Aligned_cols=49  Identities=29%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      .++||+.+.+++...|....              ....+++-|+|..|+|||+|++.++....
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~--------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQ--------------SGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTS--------------S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH--------------cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            37999999999999995222              24479999999999999999999998533

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.13  E-value=1.3e-05  Score=71.61  Aligned_cols=68  Identities=16%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      ++++.+...+.++..|...                   +.|-++|++|+||||+|+.+.+.......|+.+.||++++.+
T Consensus       176 d~~i~e~~le~l~~~L~~~-------------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy  236 (459)
T PRK11331        176 DLFIPETTIETILKRLTIK-------------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY  236 (459)
T ss_pred             cccCCHHHHHHHHHHHhcC-------------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc
Confidence            5788888899999988753                   357779999999999999999865555678889999999999


Q ss_pred             CHHHHHH
Q 046918          242 DDIRIAK  248 (251)
Q Consensus       242 ~~~~i~~  248 (251)
                      +..+++.
T Consensus       237 SYeDFI~  243 (459)
T PRK11331        237 SYEDFIQ  243 (459)
T ss_pred             cHHHHhc
Confidence            8887753

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.01  E-value=1.1e-05  Score=71.68  Aligned_cols=76  Identities=21%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      .++||+++.+++...|...-.             ......+-|+|+.|+||||+++.++++.......-..++|......
T Consensus        31 ~l~~Re~e~~~l~~~l~~~~~-------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~   97 (394)
T PRK00411         31 NLPHREEQIEELAFALRPALR-------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR   97 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence            699999999999998854320             1223456799999999999999999963322211233555555555


Q ss_pred             CHHHHHHHh
Q 046918          242 DDIRIAKAI  250 (251)
Q Consensus       242 ~~~~i~~~I  250 (251)
                      +...++..|
T Consensus        98 ~~~~~~~~i  106 (394)
T PRK00411         98 TRYAIFSEI  106 (394)
T ss_pred             CHHHHHHHH
Confidence            555554443

>PTZ00202 tuzin; Provisional

Probab=98.01  E-value=4.3e-05  Score=67.92  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             cCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918          157 LDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC  236 (251)
Q Consensus       157 ~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~  236 (251)
                      .+.. .++||+.+...+...|...+              .....++.|.|++|+|||||++.+.....      ..+++.
T Consensus       259 a~~~-~FVGReaEla~Lr~VL~~~d--------------~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~v  317 (550)
T PTZ00202        259 AVIR-QFVSREAEESWVRQVLRRLD--------------TAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFV  317 (550)
T ss_pred             CCcc-CCCCcHHHHHHHHHHHhccC--------------CCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEE
Confidence            3445 79999999999999887544              23356999999999999999999997432      113222


Q ss_pred             eCCCCCHHHHHHHhC
Q 046918          237 VSEPFDDIRIAKAIL  251 (251)
Q Consensus       237 Vs~~~~~~~i~~~Il  251 (251)
                      =+.  +..++++.|+
T Consensus       318 Npr--g~eElLr~LL  330 (550)
T PTZ00202        318 DVR--GTEDTLRSVV  330 (550)
T ss_pred             CCC--CHHHHHHHHH
Confidence            222  5677776653

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.00  E-value=1.1e-05  Score=70.99  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCC---ceEEEEe
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS-AHFD---KKIWVCV  237 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd---~~~wV~V  237 (251)
                      .++||+.+.++|..+|...-.             ......+-|+|+.|+|||++++.++++..-. ...+   ..+||..
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~~-------------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~   82 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPILR-------------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC   82 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence            699999999999999864220             1224568999999999999999999852211 1111   2356666


Q ss_pred             CCCCCHHHHHHHh
Q 046918          238 SEPFDDIRIAKAI  250 (251)
Q Consensus       238 s~~~~~~~i~~~I  250 (251)
                      ....+...++..|
T Consensus        83 ~~~~~~~~~~~~i   95 (365)
T TIGR02928        83 QILDTLYQVLVEL   95 (365)
T ss_pred             CCCCCHHHHHHHH
Confidence            5555555555544

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.95  E-value=6.3e-06  Score=67.32  Aligned_cols=43  Identities=37%  Similarity=0.451  Sum_probs=35.6

Q ss_pred             eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++||+.+.++|.+++..+.                 ...+.|+|+.|+|||+|++.+.+.
T Consensus         1 F~gR~~el~~l~~~l~~~~-----------------~~~~~l~G~rg~GKTsLl~~~~~~   43 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGP-----------------SQHILLYGPRGSGKTSLLKEFINE   43 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH-------------------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhc-----------------CcEEEEEcCCcCCHHHHHHHHHHH
Confidence            5899999999999887644                 678999999999999999999984

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.89  E-value=4e-05  Score=57.38  Aligned_cols=59  Identities=27%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             ccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046918          165 GREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD  242 (251)
Q Consensus       165 G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~  242 (251)
                      |++.....+...+....                 ...+-|+|..|+|||||++.+++...  ..-..++++..++...
T Consensus         2 ~~~~~~~~i~~~~~~~~-----------------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~   60 (151)
T cd00009           2 GQEEAIEALREALELPP-----------------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLE   60 (151)
T ss_pred             chHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhh
Confidence            56677777877775433                 45788999999999999999999532  2123456666655443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.59  E-value=5e-05  Score=55.80  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ||.|.|+.|+||||+|+.+.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999884

...

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.56  E-value=4.2e-05  Score=62.12  Aligned_cols=54  Identities=33%  Similarity=0.473  Sum_probs=33.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF  229 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F  229 (251)
                      +++|.+.-+.++.-++.....            ....+.-+-.||++|+||||||+.|.+.  ....|
T Consensus        25 efiGQ~~l~~~l~i~i~aa~~------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~   78 (233)
T PF05496_consen   25 EFIGQEHLKGNLKILIRAAKK------------RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF   78 (233)
T ss_dssp             CS-S-HHHHHHHHHHHHHHHC------------TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred             HccCcHHHHhhhHHHHHHHHh------------cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence            689998887776544432110            0244788889999999999999999994  44444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.54  E-value=0.0021  Score=60.56  Aligned_cols=60  Identities=30%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCC---ceEEEEeC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFD---KKIWVCVS  238 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd---~~~wV~Vs  238 (251)
                      +++|.+.....+...+....                 ...+.|+|+.|+||||||+.+++.......+.   ..-|+.+.
T Consensus       155 ~iiGqs~~~~~l~~~ia~~~-----------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~  217 (615)
T TIGR02903       155 EIVGQERAIKALLAKVASPF-----------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD  217 (615)
T ss_pred             hceeCcHHHHHHHHHHhcCC-----------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence            58899998888887774322                 45799999999999999999998654444432   23567664

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06696 uridine kinase; Validated

Probab=97.52  E-value=0.00013  Score=59.95  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |..-.++|.+.+....              .....+|+|.|.+|+||||||+.+...
T Consensus         3 ~~~~~~~la~~~~~~~--------------~~~~~iI~I~G~sgsGKSTlA~~L~~~   45 (223)
T PRK06696          3 RKQLIKELAEHILTLN--------------LTRPLRVAIDGITASGKTTFADELAEE   45 (223)
T ss_pred             HHHHHHHHHHHHHHhC--------------CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4455677777776533              355889999999999999999999874

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.50  E-value=0.00016  Score=62.50  Aligned_cols=47  Identities=32%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC----CCCHHHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE----PFDDIRIAK  248 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~----~~~~~~i~~  248 (251)
                      .+.-+-+||+.|+||||||+.|-+..+...    .-||..|-    .-++++|+.
T Consensus       161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife  211 (554)
T KOG2028|consen  161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE  211 (554)
T ss_pred             CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence            377788999999999999999999644433    34555553    445666654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.48  E-value=0.00031  Score=59.01  Aligned_cols=49  Identities=24%  Similarity=0.230  Sum_probs=32.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKAI  250 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~~I  250 (251)
                      ..++.|+|+.|+|||||++.+++..... .+ ..+|+. ....+..++++.|
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i   91 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMV   91 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHH
Confidence            5688999999999999999999964321 11 123433 3345666666554

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.46  E-value=0.00012  Score=62.78  Aligned_cols=49  Identities=27%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+..++......            ...+..+-++|+.|+|||+||+.+.+.
T Consensus         5 ~~iG~~~~~~~l~~~l~~~~~~------------~~~~~~~ll~Gp~G~GKT~la~~ia~~   53 (305)
T TIGR00635         5 EFIGQEKVKEQLQLFIEAAKMR------------QEALDHLLLYGPPGLGKTTLAHIIANE   53 (305)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999998888632200            123556779999999999999999985

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.43  E-value=6.2e-05  Score=56.00  Aligned_cols=52  Identities=25%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccc---cCCCceEEEEeCCCCCHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVS---AHFDKKIWVCVSEPFDDIRIAKAI  250 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~~Fd~~~wV~Vs~~~~~~~i~~~I  250 (251)
                      -+++.|+|..|+|||++++.+.++..-.   ..-..++|+..+...+...+.+.|
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   58 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEI   58 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHH
Confidence            5688999999999999999999952110   002345799998887888887765

>PRK07667 uridine kinase; Provisional

Probab=97.31  E-value=0.00036  Score=55.94  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          170 QIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       170 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.|.+.|....               ....+|+|-|.+|+||||||+.+...
T Consensus         3 ~~~~~~~~~~~~---------------~~~~iIgI~G~~gsGKStla~~L~~~   40 (193)
T PRK07667          3 TNELINIMKKHK---------------ENRFILGIDGLSRSGKTTFVANLKEN   40 (193)
T ss_pred             HHHHHHHHHhcC---------------CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456666665444               44689999999999999999999873

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.29  E-value=0.00026  Score=61.72  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=41.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +++|.++.++++++++......           ....-+++.++|+.|+||||||+.+.+..
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g-----------~~~~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQG-----------LEERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999764410           02346899999999999999999998853

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.28  E-value=0.00035  Score=62.74  Aligned_cols=44  Identities=39%  Similarity=0.499  Sum_probs=32.7

Q ss_pred             ceeccchhHHH---HHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIK---VANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.....   +..++....                 ...+-++|+.|+||||||+.+.+.
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~~~-----------------~~~ilL~GppGtGKTtLA~~ia~~   59 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEAGR-----------------LSSMILWGPPGTGKTTLARIIAGA   59 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence            47777766444   666664333                 556778999999999999999884

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.26  E-value=0.0007  Score=58.84  Aligned_cols=71  Identities=30%  Similarity=0.435  Sum_probs=58.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      .+.+|+.+...+..++.+.+              .--+++|-|+|-.|.|||.+.+.+.+...  .   ..+|+++-..|
T Consensus         7 ~v~~Re~qi~~L~~Llg~~~--------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecf   67 (438)
T KOG2543|consen    7 NVPCRESQIRRLKSLLGNNS--------------CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECF   67 (438)
T ss_pred             CccchHHHHHHHHHHhCCCC--------------cccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhc
Confidence            68999999999999887665              12355668999999999999999999642  1   35899999999


Q ss_pred             CHHHHHHHhC
Q 046918          242 DDIRIAKAIL  251 (251)
Q Consensus       242 ~~~~i~~~Il  251 (251)
                      +.+-++..||
T Consensus        68 t~~~lle~IL   77 (438)
T KOG2543|consen   68 TYAILLEKIL   77 (438)
T ss_pred             cHHHHHHHHH
Confidence            9999888875

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0027  Score=59.43  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=41.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF  229 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F  229 (251)
                      +-+|.+.-+++|++.|--..-.           ..-.-+++..||++|||||.|++.|..  .....|
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~-----------~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf  378 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLT-----------KKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF  378 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHh-----------ccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence            4689999999999998533200           023457999999999999999999988  344444

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.20  E-value=0.00039  Score=60.47  Aligned_cols=49  Identities=27%  Similarity=0.386  Sum_probs=37.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+..++......            ......+-++|+.|+||||||+.+.+.
T Consensus        26 ~~vG~~~~~~~l~~~l~~~~~~------------~~~~~~~ll~GppG~GKT~la~~ia~~   74 (328)
T PRK00080         26 EFIGQEKVKENLKIFIEAAKKR------------GEALDHVLLYGPPGLGKTTLANIIANE   74 (328)
T ss_pred             HhcCcHHHHHHHHHHHHHHHhc------------CCCCCcEEEECCCCccHHHHHHHHHHH
Confidence            6899999999888777532100            123556779999999999999999985

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=97.18  E-value=0.012  Score=45.01  Aligned_cols=83  Identities=11%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHhhchhhHH
Q 046918            2 AEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMK-ENAVRVWLDDLKHASYDMEDVL   80 (251)
Q Consensus         2 A~~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~Wl~~l~~~a~d~eD~l   80 (251)
                      |+.+.+++++.+.+.|...+.+.......++.-+++|..+++.|..++.+.+..... +..-+.=+.++.+...++++++
T Consensus         3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV   82 (147)
T PF05659_consen    3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV   82 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            556666777777777666677777777888999999999999999999998885322 2222666788888888899998


Q ss_pred             Hhhh
Q 046918           81 DEWN   84 (251)
Q Consensus        81 d~~~   84 (251)
                      ..|.
T Consensus        83 ~k~s   86 (147)
T PF05659_consen   83 EKCS   86 (147)
T ss_pred             HHhc
Confidence            8875

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00053  Score=59.95  Aligned_cols=31  Identities=42%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF  229 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F  229 (251)
                      ..+.-.-.||++|+||||||+.|-.  .....|
T Consensus        46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f   76 (436)
T COG2256          46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF   76 (436)
T ss_pred             CCCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence            3477777999999999999999998  344444

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.11  E-value=0.00037  Score=51.41  Aligned_cols=21  Identities=43%  Similarity=0.686  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |.|.|+.|+||||+|+.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998875

...

>PF13173 AAA_14: AAA domain

Probab=97.09  E-value=0.0006  Score=50.79  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=28.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE  239 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~  239 (251)
                      -+++.|.|+.|+|||||++.++.+..   .....+++...+
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~   39 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD   39 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence            46899999999999999999987533   234456665554

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.06  E-value=0.00099  Score=54.43  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ...+-|+|..|+||||||+.+++..  .......+++..+
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~   75 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLA   75 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHH
Confidence            5678899999999999999999852  2233344555543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.98  E-value=0.0025  Score=52.40  Aligned_cols=51  Identities=22%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAH----FDKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~----Fd~~~wV~Vs~~~~~~~i~  247 (251)
                      ..-.++.|+|.+|+|||||+..+.-.......    ...++|+.-...++..++.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~   71 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV   71 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence            44689999999999999999998643222221    3578999988888776654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK06547 hypothetical protein; Provisional

Probab=96.94  E-value=0.0014  Score=51.59  Aligned_cols=26  Identities=38%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|.|+.|+||||||+.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999999764

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.92  E-value=0.0025  Score=51.52  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-+++-|+|.+|+|||+|+..+..+  .......++|+.... ++..++.+
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~   58 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ   58 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence            44789999999999999999987764  333456788998876 66666544

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.92  E-value=0.00091  Score=65.16  Aligned_cols=44  Identities=27%  Similarity=0.286  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+.+.+++.|....                 ..-+-++|.+|+|||++|+.+...
T Consensus       180 ~~igr~~ei~~~~~~L~r~~-----------------~~n~lL~G~pGvGKTal~~~la~~  223 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRT-----------------KNNPILIGEPGVGKTAIAEGLAQR  223 (821)
T ss_pred             CCCCcHHHHHHHHHHHcccc-----------------cCCeEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999997654                 223359999999999999988774

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.91  E-value=0.0012  Score=57.33  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+..++..+.                 ++.+-++|+.|+||||+|+.+.+.
T Consensus        16 ~~~g~~~~~~~L~~~~~~~~-----------------~~~lll~Gp~GtGKT~la~~~~~~   59 (337)
T PRK12402         16 DILGQDEVVERLSRAVDSPN-----------------LPHLLVQGPPGSGKTAAVRALARE   59 (337)
T ss_pred             HhcCCHHHHHHHHHHHhCCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence            67899988888888775433                 345679999999999999998774

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.91  E-value=0.0011  Score=61.13  Aligned_cols=49  Identities=20%  Similarity=0.234  Sum_probs=38.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+..+++|++.|......      .     ...-+++.++|+.|+||||||+.+.+
T Consensus        77 d~yGlee~ieriv~~l~~Aa~g------l-----~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQG------L-----EEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHh------c-----CCCCceEEEecCCCCCchHHHHHHHH
Confidence            4799999999999999332100      0     13357999999999999999999988

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.019  Score=53.99  Aligned_cols=49  Identities=22%  Similarity=0.367  Sum_probs=39.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +-+|.++-+++|++++--..-           -++-.-+|+..+|+.|||||.+++.|..
T Consensus       412 DHYgm~dVKeRILEfiAV~kL-----------rgs~qGkIlCf~GPPGVGKTSI~kSIA~  460 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGKL-----------RGSVQGKILCFVGPPGVGKTSIAKSIAR  460 (906)
T ss_pred             cccchHHHHHHHHHHHHHHhh-----------cccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence            468999999999999864431           0124578999999999999999999988

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.83  E-value=0.00093  Score=44.14  Aligned_cols=22  Identities=45%  Similarity=0.679  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +|.|.|..|+||||+++.+.+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.001  Score=53.88  Aligned_cols=28  Identities=39%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      ..+-+|||-|.+|+||||+|+.+++...
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4478999999999999999999987644

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.80  E-value=0.0016  Score=62.32  Aligned_cols=49  Identities=35%  Similarity=0.489  Sum_probs=33.9

Q ss_pred             ceeccchhHH---HHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC
Q 046918          162 EVRGREHLQI---KVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF  229 (251)
Q Consensus       162 ~~~G~~~~~~---~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F  229 (251)
                      +++|.+....   .+.+.+..+.                 +.-+-++|++|+||||||+.+++.  ...+|
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~~~-----------------~~slLL~GPpGtGKTTLA~aIA~~--~~~~f   80 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKADR-----------------VGSLILYGPPGVGKTTLARIIANH--TRAHF   80 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence            5778776553   3444444332                 556679999999999999999984  33444

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.80  E-value=0.0011  Score=49.92  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 046918          201 IISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ||-++|+.|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999884

...

>PRK04195 replication factor C large subunit; Provisional

Probab=96.79  E-value=0.0011  Score=60.85  Aligned_cols=48  Identities=27%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+|+.....             ....+.+-|+|+.|+||||+|+.+.++
T Consensus        15 dlvg~~~~~~~l~~~l~~~~~-------------g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         15 DVVGNEKAKEQLREWIESWLK-------------GKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             HhcCCHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999865330             122678899999999999999999885

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.78  E-value=0.0013  Score=57.96  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCC-CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSES-STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|++..+++|.+.+...-.. ..-..-|     -...+-+-++|+.|+|||+||+.+++.
T Consensus       123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-----~~~p~gvLL~GppGtGKT~lakaia~~  179 (364)
T TIGR01242       123 DIGGLEEQIREIREAVELPLKHPELFEEVG-----IEPPKGVLLYGPPGTGKTLLAKAVAHE  179 (364)
T ss_pred             HhCChHHHHHHHHHHHHHHhcCHHHHHhcC-----CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999998876422100 0000000     122455889999999999999999984

Many proteins may score above the trusted cutoff because an internal

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.77  E-value=0.0013  Score=48.59  Aligned_cols=25  Identities=44%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...+.|+|+.|+||||+++.+....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcc
Confidence            3578999999999999999999853

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.76  E-value=0.0015  Score=63.72  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+..++++.|....                 ..-+-++|.+|+||||||+.+...
T Consensus       188 ~~iGr~~ei~~~i~~l~r~~-----------------~~n~lLvG~pGvGKTal~~~La~~  231 (852)
T TIGR03345       188 PVLGRDDEIRQMIDILLRRR-----------------QNNPILTGEAGVGKTAVVEGLALR  231 (852)
T ss_pred             cccCCHHHHHHHHHHHhcCC-----------------cCceeEECCCCCCHHHHHHHHHHH
Confidence            58999999999999997654                 223459999999999999998874

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.72  E-value=0.0017  Score=62.49  Aligned_cols=44  Identities=23%  Similarity=0.224  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+.+.++..|....                 ..-+-++|.+|+|||++|+.+...
T Consensus       183 ~~igr~~ei~~~~~~L~~~~-----------------~~n~lL~G~pG~GKT~l~~~la~~  226 (731)
T TIGR02639       183 PLIGREDELERTIQVLCRRK-----------------KNNPLLVGEPGVGKTAIAEGLALR  226 (731)
T ss_pred             cccCcHHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999887654                 223458999999999999998874

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.71  E-value=0.0018  Score=50.85  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+++|+|..|+|||||++.+...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            4679999999999999999888743

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.70  E-value=0.0014  Score=49.76  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE  239 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~  239 (251)
                      ++|.|+|..|+|||||++.+.+... +..+.+.+..+...
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence            4899999999999999999999532 23344444555444

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.70  E-value=0.0016  Score=51.18  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.+.|+.|+||||+|+.+++.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34669999999999999999998753

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.69  E-value=0.0018  Score=63.22  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+.+++++.|....                 ..-+-++|.+|+||||||+.+...
T Consensus       179 ~vigr~~ei~~~i~iL~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~  222 (857)
T PRK10865        179 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR  222 (857)
T ss_pred             cCCCCHHHHHHHHHHHhcCC-----------------cCceEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999997655                 233448999999999999988774

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.69  E-value=0.0023  Score=53.88  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCCCCH-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHF-DKKIWVCVSEPFDD-IRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d~~~wV~Vs~~~~~-~~i~~~  249 (251)
                      -+-++|+|..|+|||||++.+++.  ++.+| +.++++-+.+.... .+++++
T Consensus        69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~  119 (274)
T cd01133          69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHE  119 (274)
T ss_pred             CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHH
Confidence            557899999999999999999994  55455 45677888876643 444443

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PHA00729 NTP-binding motif containing protein

Probab=96.68  E-value=0.0025  Score=52.12  Aligned_cols=24  Identities=38%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...|.|+|.+|+||||||..+.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            567889999999999999998774

>TIGR00763 lon ATP-dependent protease La

Probab=96.66  E-value=0.016  Score=56.34  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-++.|.+++......      +     .....++.++|+.|+||||||+.+.+.
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~------~-----~~~~~~lll~GppG~GKT~lAk~iA~~  370 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLR------G-----KMKGPILCLVGPPGVGKTSLGKSIAKA  370 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhh------c-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            5789998899988876432100      0     122348999999999999999999884

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.66  E-value=0.0055  Score=52.69  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++...+.+..++....                 .+.+-++|..|+||||+++.+.+.
T Consensus        18 ~~~g~~~~~~~l~~~i~~~~-----------------~~~~ll~G~~G~GKt~~~~~l~~~   61 (319)
T PRK00440         18 EIVGQEEIVERLKSYVKEKN-----------------MPHLLFAGPPGTGKTTAALALARE   61 (319)
T ss_pred             HhcCcHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence            57899988888888886533                 345789999999999999999874

>PRK06893 DNA replication initiation factor; Validated

Probab=96.65  E-value=0.0016  Score=53.70  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      +.+-+||+.|+|||+|++.+++.  .......+.+++++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence            56889999999999999999985  32223345666664

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.62  E-value=0.0029  Score=54.56  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+...+.+..++..+.                -..++-++|+.|+||||||+.+++.
T Consensus        22 ~~~~~~~~~~~l~~~~~~~~----------------~~~~lll~G~~G~GKT~la~~l~~~   66 (316)
T PHA02544         22 ECILPAADKETFKSIVKKGR----------------IPNMLLHSPSPGTGKTTVAKALCNE   66 (316)
T ss_pred             HhcCcHHHHHHHHHHHhcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            68999999999999886433                2567888999999999999999884

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.61  E-value=0.002  Score=53.02  Aligned_cols=26  Identities=38%  Similarity=0.471  Sum_probs=23.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|.|..|+|||||++.+..-
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999988873

>PLN03025 replication factor C subunit; Provisional

Probab=96.61  E-value=0.0053  Score=53.15  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++-+..|..++..+.                 .+-+-++|+.|+||||+|+.+.+.
T Consensus        14 ~~~g~~~~~~~L~~~~~~~~-----------------~~~lll~Gp~G~GKTtla~~la~~   57 (319)
T PLN03025         14 DIVGNEDAVSRLQVIARDGN-----------------MPNLILSGPPGTGKTTSILALAHE   57 (319)
T ss_pred             HhcCcHHHHHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence            57888877777777665433                 333568999999999999998874

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.61  E-value=0.0021  Score=54.78  Aligned_cols=25  Identities=44%  Similarity=0.717  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +..-+|||.|..|+||||||+.+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999987643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.60  E-value=0.0018  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCcc
Q 046918          202 ISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      |.|+|..|+|||||.+.+.+.+.
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            67999999999999999987643

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.58  E-value=0.0021  Score=57.25  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|++..++++.+.+...-.....-.    .-+-...+-|-++|++|+|||+||+.+.+.
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~----~~g~~~p~gvLL~GppGtGKT~lAkaia~~  188 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFE----EVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  188 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHH----hcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence            688999999998886632110000000    000123556889999999999999999984

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.56  E-value=0.0026  Score=51.54  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|+|+.|+|||||++.+.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45789999999999999999999763

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.56  E-value=0.0078  Score=49.18  Aligned_cols=49  Identities=22%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC------CceEEEEeCCCCCHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF------DKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F------d~~~wV~Vs~~~~~~~i~  247 (251)
                      ..-.++.|+|.+|+|||+|+..+.-..  ...-      ..++|+.....++...+.
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~   71 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV   71 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence            446799999999999999999986632  1122      456888888888776654

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.56  E-value=0.0094  Score=51.45  Aligned_cols=69  Identities=20%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC----cccccCCCceEEEE-
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND----NVVSAHFDKKIWVC-  236 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d----~~v~~~Fd~~~wV~-  236 (251)
                      +++|.+.-++.+.+++..+.                -...+-++|+.|+||||||+.++..    .....|+|...|.. 
T Consensus         5 ~i~g~~~~~~~l~~~~~~~~----------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~   68 (313)
T PRK05564          5 TIIGHENIKNRIKNSIIKNR----------------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI   68 (313)
T ss_pred             hccCcHHHHHHHHHHHHcCC----------------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence            57898888899999886543                2457789999999999999888773    12345778777766 


Q ss_pred             eCCCCCHHHH
Q 046918          237 VSEPFDDIRI  246 (251)
Q Consensus       237 Vs~~~~~~~i  246 (251)
                      -+....+.+|
T Consensus        69 ~~~~i~v~~i   78 (313)
T PRK05564         69 NKKSIGVDDI   78 (313)
T ss_pred             cCCCCCHHHH
Confidence            3455555554

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.54  E-value=0.009  Score=48.88  Aligned_cols=47  Identities=21%  Similarity=0.242  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      ..-.++-|+|.+|+|||+|+..+..+  ....-..++|+..- .++...+
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~   67 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF   67 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence            44679999999999999999998874  22334567898876 5655444

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.54  E-value=0.0024  Score=49.22  Aligned_cols=24  Identities=46%  Similarity=0.649  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..||.+.|..|+||||||+.+...
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~   25 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERR   25 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999984

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.53  E-value=0.002  Score=47.61  Aligned_cols=21  Identities=48%  Similarity=0.574  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |-|+|+.|+||||||+.+.++
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            468999999999999999995

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.53  E-value=0.0021  Score=53.97  Aligned_cols=49  Identities=27%  Similarity=0.392  Sum_probs=38.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++-++++.=++.....            .+..+.-+-++|++|.||||||..|.+.
T Consensus        27 efiGQ~~vk~~L~ifI~AAk~------------r~e~lDHvLl~GPPGlGKTTLA~IIA~E   75 (332)
T COG2255          27 EFIGQEKVKEQLQIFIKAAKK------------RGEALDHVLLFGPPGLGKTTLAHIIANE   75 (332)
T ss_pred             HhcChHHHHHHHHHHHHHHHh------------cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence            678988888887666654321            0345888999999999999999999995

>PRK05439 pantothenate kinase; Provisional

Probab=96.50  E-value=0.0047  Score=53.13  Aligned_cols=26  Identities=42%  Similarity=0.691  Sum_probs=23.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....-+|+|.|..|+||||+|+.+..
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999998876

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.49  E-value=0.002  Score=48.76  Aligned_cols=21  Identities=48%  Similarity=0.771  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 046918          201 IISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ||.|.|..|+||||+|+.+-.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~   21 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAK   21 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998775

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.48  E-value=0.013  Score=56.64  Aligned_cols=50  Identities=24%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.+|.+.-++.|+++|......        .   .....++.++|+.|+||||+++.+...
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~~--------~---~~~g~~i~l~GppG~GKTtl~~~ia~~  372 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSRV--------N---KIKGPILCLVGPPGVGKTSLGQSIAKA  372 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHhc--------c---cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999888632200        0   123458999999999999999999873

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.48  E-value=0.0014  Score=55.13  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +...-+-++|+.|+||||+|+.+.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHH
Confidence            3456678999999999999999976

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.48  E-value=0.003  Score=50.75  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|+|+.|+||||||+.+...
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~   47 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEA   47 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34679999999999999999999873

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.47  E-value=0.0027  Score=47.54  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||.+.+...
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEccCCCccccceeeeccc
Confidence            458999999999999999999985

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01878 HflX HflX subfamily

Probab=96.45  E-value=0.012  Score=47.12  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....|+|+|.+|+|||||.+.+.+..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcch
Confidence            36799999999999999999988863

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.0027  Score=58.33  Aligned_cols=46  Identities=39%  Similarity=0.459  Sum_probs=36.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +++|.+.-++.|.+++....                -...+-++|+.|+||||+|+.+.+.-
T Consensus        15 dvvGq~~v~~~L~~~i~~~~----------------l~ha~Lf~GppGtGKTTlA~~lA~~l   60 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQGR----------------LGHAYLFSGPRGVGKTTTARLIAMAV   60 (504)
T ss_pred             HhcChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68898888888888876543                24567899999999999999987753

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.43  E-value=0.0017  Score=46.87  Aligned_cols=21  Identities=52%  Similarity=0.668  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |-|+|.+|+|||+||+.+..+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~   21 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKD   21 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999997764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.41  E-value=0.0036  Score=61.28  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=36.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+..+++..|....                 ..-+-++|..|+|||+||+.+...
T Consensus       174 ~~igr~~ei~~~~~~l~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~  217 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR  217 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999997654                 223347999999999999988774

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.40  E-value=0.0025  Score=48.12  Aligned_cols=22  Identities=32%  Similarity=0.756  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +|.|+|+.|+|||||++.+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999985

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.1  Score=50.03  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=38.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-...+.+.+.....+-.        +++..+.+.-.+|+.|||||-||+.+-.
T Consensus       492 rViGQd~AV~avs~aIrraRaGL~--------dp~rPigsFlF~GPTGVGKTELAkaLA~  543 (786)
T COG0542         492 RVIGQDEAVEAVSDAIRRARAGLG--------DPNRPIGSFLFLGPTGVGKTELAKALAE  543 (786)
T ss_pred             ceeChHHHHHHHHHHHHHHhcCCC--------CCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence            699999988888777654321111        1145678888999999999999888655

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0072  Score=53.29  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=50.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccC---CCceEEEEeC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAH---FDKKIWVCVS  238 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~---Fd~~~wV~Vs  238 (251)
                      .+.+|+.+.+++...|..--.       |      ....-+-|+|..|+|||+.++.|.+.  ++..   .+ .+.|..-
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~-------~------~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~-~~yINc~   81 (366)
T COG1474          18 ELPHREEEINQLASFLAPALR-------G------ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVE-VVYINCL   81 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhc-------C------CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCc-eEEEeee
Confidence            589999999999988764331       1      11223889999999999999999995  3333   22 4556555


Q ss_pred             CCCCHHHHHHHh
Q 046918          239 EPFDDIRIAKAI  250 (251)
Q Consensus       239 ~~~~~~~i~~~I  250 (251)
                      ...+..+++..|
T Consensus        82 ~~~t~~~i~~~i   93 (366)
T COG1474          82 ELRTPYQVLSKI   93 (366)
T ss_pred             eCCCHHHHHHHH
Confidence            555555655544

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.35  E-value=0.0027  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 046918          201 IISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +|.+.|+.|+||||+|+.+....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            47789999999999999988764

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK08727 hypothetical protein; Validated

Probab=96.35  E-value=0.0076  Score=49.77  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE  239 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~  239 (251)
                      .-+.|+|..|+|||+|++.+++.  ..++.-..+++++.+
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~   79 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA   79 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH
Confidence            45999999999999999999884  333333556776544

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.35  E-value=0.0058  Score=50.08  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-|+|..|+|||+||+.+++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~   65 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVAD   65 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999985

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.34  E-value=0.0048  Score=57.19  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|.|..|+||||||+.+...
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~Lagl   88 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNF   88 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence            45889999999999999999999874

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.34  E-value=0.0046  Score=51.12  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV  237 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V  237 (251)
                      .--+.|+|..|+|||||+..+..+  ....|.++.+++-
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~   49 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP   49 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence            446789999999999999999874  6678877766654

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.34  E-value=0.0031  Score=52.60  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.++.-
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            579999999999999999999983

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.33  E-value=0.011  Score=53.70  Aligned_cols=42  Identities=24%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|+++..+.+...++.+.                   -+-+.|+.|+|||+||+.+..-
T Consensus        21 ~i~gre~vI~lll~aalag~-------------------hVLL~GpPGTGKT~LAraLa~~   62 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFA   62 (498)
T ss_pred             hccCcHHHHHHHHHHHccCC-------------------CEEEECCCChhHHHHHHHHHHH
Confidence            58999999999988887654                   4678999999999999999984

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=96.32  E-value=0.013  Score=49.80  Aligned_cols=77  Identities=10%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHhhchhhHHHh
Q 046918            4 VIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKR-QMKENAVRVWLDDLKHASYDMEDVLDE   82 (251)
Q Consensus         4 ~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~Wl~~l~~~a~d~eD~ld~   82 (251)
                      +.|..++++|-+..    ......+.-++.+++-++.+|+.+|.||+..-+. +..-+..+.++.++-..||++|-++|.
T Consensus       296 GyVdFlL~NLkdfq----~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa  371 (402)
T PF12061_consen  296 GYVDFLLKNLKDFQ----GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA  371 (402)
T ss_pred             cHHHHHHhhHHHHh----ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence            34666777776653    2223445667999999999999999999987443 433345899999999999999999998


Q ss_pred             hh
Q 046918           83 WN   84 (251)
Q Consensus        83 ~~   84 (251)
                      +.
T Consensus       372 Ci  373 (402)
T PF12061_consen  372 CI  373 (402)
T ss_pred             hh
Confidence            86

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.31  E-value=0.004  Score=44.86  Aligned_cols=22  Identities=45%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      -..++|+|+.|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.30  E-value=0.0039  Score=50.44  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++++|+++|..|+|||||.+.+...
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999998774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.30  E-value=0.0058  Score=55.73  Aligned_cols=45  Identities=33%  Similarity=0.504  Sum_probs=35.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-...+...+..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        15 divGq~~i~~~L~~~i~~~~----------------l~~~~Lf~GPpGtGKTTlA~~lA~~   59 (472)
T PRK14962         15 EVVGQDHVKKLIINALKKNS----------------ISHAYIFAGPRGTGKTTVARILAKS   59 (472)
T ss_pred             HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68998877777777665433                1356789999999999999999764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.28  E-value=0.0035  Score=51.67  Aligned_cols=23  Identities=43%  Similarity=0.596  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      --.++|+|++|+|||||.+.|-.
T Consensus        29 GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999999876

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.26  E-value=0.0069  Score=45.45  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=22.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      -.+|.+.|.-|+|||||++.+.+..
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4589999999999999999998853

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.25  E-value=0.0037  Score=50.86  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.25  E-value=0.0038  Score=50.55  Aligned_cols=24  Identities=38%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          27 GEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            568999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.25  E-value=0.0035  Score=48.61  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+|++|+|+.|+|||||+..+-.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~   24 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHH
Confidence            57999999999999999999843

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.25  E-value=0.0069  Score=53.46  Aligned_cols=45  Identities=31%  Similarity=0.547  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-++.+.+.+..+.                -...+-++|+.|+||||||+.+.+.
T Consensus        17 ~iiGq~~~~~~l~~~~~~~~----------------~~h~~L~~Gp~G~GKTtla~~la~~   61 (363)
T PRK14961         17 DIIGQKHIVTAISNGLSLGR----------------IHHAWLLSGTRGVGKTTIARLLAKS   61 (363)
T ss_pred             hccChHHHHHHHHHHHHcCC----------------CCeEEEEecCCCCCHHHHHHHHHHH
Confidence            68999999999888886543                2456789999999999999998764

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.24  E-value=0.0037  Score=52.20  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=23.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....+|-++||+|.||||..|.++.+.
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl   43 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHL   43 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence            557788899999999999999999863

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.23  E-value=0.0055  Score=48.00  Aligned_cols=45  Identities=27%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++|....+.++++.+..-.              ....+|+ |+|-.|+||+.+|+.|++.
T Consensus         1 liG~s~~m~~~~~~~~~~a--------------~~~~pVl-I~GE~GtGK~~lA~~IH~~   45 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAA--------------SSDLPVL-ITGETGTGKELLARAIHNN   45 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHT--------------TSTS-EE-EECSTTSSHHHHHHHHHHC
T ss_pred             CEeCCHHHHHHHHHHHHHh--------------CCCCCEE-EEcCCCCcHHHHHHHHHHh
Confidence            3566777777777665433              1235555 9999999999999999994

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.23  E-value=0.0092  Score=49.35  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-|+|+.|+|||+|++.+++.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~   68 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAE   68 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999999984

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.0039  Score=51.18  Aligned_cols=23  Identities=43%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      --+++|+|..|+|||||++.+-.
T Consensus        33 Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          33 GETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhc
Confidence            45899999999999999999865

>PRK09087 hypothetical protein; Validated

Probab=96.22  E-value=0.0067  Score=49.90  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -+.+.|||..|+|||+|++.+++.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999875

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.21  E-value=0.0089  Score=50.16  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      +.-+++.|+|..|+|||+++.+.-.  ...+++..++||+..+.+
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~   63 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP   63 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence            4578999999999999999988776  344558899999998765

>cd01394 radB RadB

Probab=96.21  E-value=0.015  Score=47.30  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      ..-.++-|.|.+|+|||||+.++....  ...=..++|+.....+
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~   59 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLS   59 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCC
Confidence            447899999999999999999987642  2222345677654444

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.20  E-value=0.0043  Score=49.37  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.20  E-value=0.0043  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999964

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.19  E-value=0.0043  Score=50.44  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.15  E-value=0.012  Score=58.01  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=35.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC-CCCHHHHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE-PFDDIRIAKA  249 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~-~~~~~~i~~~  249 (251)
                      ..+++-|.|++|.|||||+......      |+.++|+++.. +-++..++..
T Consensus        31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~   77 (903)
T PRK04841         31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY   77 (903)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence            4789999999999999999998752      34689999964 4455555443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.15  E-value=0.0047  Score=48.68  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.15  E-value=0.0061  Score=58.64  Aligned_cols=44  Identities=23%  Similarity=0.235  Sum_probs=36.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+..++++.|....                 ..-+-++|..|+|||+||+.+.+.
T Consensus       187 ~liGR~~ei~~~i~iL~r~~-----------------~~n~LLvGppGvGKT~lae~la~~  230 (758)
T PRK11034        187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_pred             cCcCCCHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999887744                 112247999999999999998863

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.12  E-value=0.0058  Score=49.41  Aligned_cols=34  Identities=29%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEE
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWV  235 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV  235 (251)
                      --|+.|+|++|+|||||.+-++.=+....   -.|||
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i   61 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITV   61 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEE
Confidence            56999999999999999999998544332   34555

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.12  E-value=0.0049  Score=50.39  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      --.++|+|+.|+|||||...+..
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999987

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.11  E-value=0.005  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.11  E-value=0.005  Score=50.20  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.11  E-value=0.005  Score=50.77  Aligned_cols=24  Identities=46%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.09  E-value=0.22  Score=49.00  Aligned_cols=52  Identities=25%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-++.+.+.+......      ...  +.....++-++|+.|+|||+||+.+.+
T Consensus       569 ~viGQ~~ai~~l~~~i~~~~~g------l~~--~~~p~~~~Lf~Gp~G~GKT~lA~aLa~  620 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRRSRAG------LSD--PNRPIGSFLFLGPTGVGKTELCKALAN  620 (857)
T ss_pred             eEeCCHHHHHHHHHHHHHHHhc------ccC--CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            6899998888887777532100      000  023356888999999999999999987

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.09  E-value=0.005  Score=48.66  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            459999999999999999999874

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10536 hypothetical protein; Provisional

Probab=96.09  E-value=0.012  Score=49.16  Aligned_cols=51  Identities=22%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK  231 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~  231 (251)
                      .+.++......++.+|.+                   ..++.+.|..|+|||+||....-+.-..+.|+.
T Consensus        56 ~i~p~n~~Q~~~l~al~~-------------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k  106 (262)
T PRK10536         56 PILARNEAQAHYLKAIES-------------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR  106 (262)
T ss_pred             cccCCCHHHHHHHHHHhc-------------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence            466778888888888854                   238999999999999999997775322333443

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.09  E-value=0.0052  Score=49.81  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.08  E-value=0.0087  Score=48.79  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999874

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.08  E-value=0.0045  Score=47.45  Aligned_cols=22  Identities=41%  Similarity=0.705  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ||.|+|..|+||||||+.+...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~   22 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEK   22 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999986664

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.08  E-value=0.0059  Score=49.58  Aligned_cols=25  Identities=36%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .. .+++|+|..|.|||||++.+..-
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~   46 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGL   46 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence            45 89999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.07  E-value=0.0053  Score=49.67  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.07  E-value=0.0058  Score=44.37  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |+|+|+.|+|||||.+.+.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN02796 D-glycerate 3-kinase

Probab=96.06  E-value=0.0059  Score=53.07  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...-+|+|.|..|+|||||++.+..-
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~l  123 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYL  123 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999999999874

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.06  E-value=0.0054  Score=49.75  Aligned_cols=24  Identities=42%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.05  E-value=0.0052  Score=50.85  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.05  E-value=0.0059  Score=51.97  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.++|++|+||||++..+...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~  217 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAAR  217 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999998764

>cd04155 Arl3 Arl3 subfamily

Probab=96.04  E-value=0.0052  Score=47.69  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-|+|+|..|+|||||++.+.+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            455999999999999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.04  E-value=0.024  Score=48.86  Aligned_cols=52  Identities=19%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-.|+-|+|..|+|||||+.++.-+.....    .=..++||..-..|+..++.+
T Consensus        93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~  148 (310)
T TIGR02236        93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ  148 (310)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence            3478999999999999999999876432211    112689999999888877654

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.04  E-value=0.0053  Score=49.78  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          25 GEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999875

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.04  E-value=0.013  Score=51.60  Aligned_cols=49  Identities=20%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCccccc-CCCc-eEEEEeCCCC-CHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSA-HFDK-KIWVCVSEPF-DDIRIAKAI  250 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~-~Fd~-~~wV~Vs~~~-~~~~i~~~I  250 (251)
                      .-+.|+|..|+|||||++.+.+.  +.. +=+. ++|+.|.+.. ++.++++.+
T Consensus       134 QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i  185 (380)
T PRK12608        134 QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSV  185 (380)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHH
Confidence            45689999999999999998873  322 2244 4788888754 666676654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.03  E-value=0.0057  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.02  E-value=0.0056  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            469999999999999999999874

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.02  E-value=0.0059  Score=49.23  Aligned_cols=24  Identities=46%  Similarity=0.627  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999884

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK06620 hypothetical protein; Validated

Probab=96.02  E-value=0.0054  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..+-|||+.|+|||+|++.+++..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            578999999999999999988853

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.01  E-value=0.0057  Score=49.84  Aligned_cols=24  Identities=38%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=96.00  E-value=0.018  Score=55.70  Aligned_cols=49  Identities=29%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.||+.+.++|...|...-.+            ...-.++-|+|+.|+|||+.++.|.+.
T Consensus       756 ~LPhREeEIeeLasfL~paIkg------------sgpnnvLYIyG~PGTGKTATVK~VLrE  804 (1164)
T PTZ00112        756 YLPCREKEIKEVHGFLESGIKQ------------SGSNQILYISGMPGTGKTATVYSVIQL  804 (1164)
T ss_pred             cCCChHHHHHHHHHHHHHHHhc------------CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999888653210            122467889999999999999999875

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.00  E-value=0.0053  Score=49.71  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|+|..|.|||||++.+..-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8999999999999999999974

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.00  E-value=0.0059  Score=50.03  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          26 GEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            469999999999999999999863

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.00  E-value=0.0058  Score=50.56  Aligned_cols=24  Identities=42%  Similarity=0.528  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999885

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12377 putative replication protein; Provisional

Probab=95.99  E-value=0.0061  Score=50.84  Aligned_cols=39  Identities=31%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE  239 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~  239 (251)
                      ...+-++|..|+|||+||..|.+.  .....-.+++++++.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~~  139 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVPD  139 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHHH
Confidence            357889999999999999999995  334444567777653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.99  E-value=0.006  Score=49.44  Aligned_cols=24  Identities=33%  Similarity=0.641  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999885

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>CHL00181 cbbX CbbX; Provisional

Probab=95.99  E-value=0.015  Score=49.65  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+-++|++|+||||+|+.+.+.
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~   82 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADI   82 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999999763

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.97  E-value=0.0068  Score=47.02  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++|+|+|..|+|||||+..+...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~   24 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPA   24 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999987765

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.97  E-value=0.0061  Score=50.30  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        27 GEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999874

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.96  E-value=0.0064  Score=49.45  Aligned_cols=24  Identities=42%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999975

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.96  E-value=0.0066  Score=53.76  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++|+++|.+|+||||++.++...
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~  264 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQ  264 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Confidence            3689999999999999999999763

>PLN02348 phosphoribulokinase

Probab=95.95  E-value=0.0072  Score=53.36  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +..-+|+|.|.+|+||||||+.+.+.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~   72 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSV   72 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44789999999999999999999874

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.95  E-value=0.0067  Score=48.55  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999885

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.95  E-value=0.0063  Score=49.81  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          31 GETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.95  E-value=0.0074  Score=45.78  Aligned_cols=24  Identities=38%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +-|-++|..|+|||||+|.+...+
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            357789999999999999999864

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.95  E-value=0.0059  Score=45.90  Aligned_cols=20  Identities=45%  Similarity=0.595  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 046918          202 ISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~  221 (251)
                      |-++|..|+|||+||+.+..
T Consensus         2 vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45899999999999998876

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.94  E-value=0.011  Score=48.03  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.92  E-value=0.0072  Score=49.26  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          26 GEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999874

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.92  E-value=0.0068  Score=50.50  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~   48 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGV   48 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999885

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.91  E-value=0.0066  Score=50.49  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||.|.+..
T Consensus        30 G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          30 GEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            36999999999999999999988

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0067  Score=49.94  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.90  E-value=0.0069  Score=48.83  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999875

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.90  E-value=0.007  Score=49.62  Aligned_cols=24  Identities=33%  Similarity=0.402  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999985

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.90  E-value=0.0071  Score=49.75  Aligned_cols=24  Identities=42%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.89  E-value=0.0068  Score=50.73  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999874

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.89  E-value=0.0071  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.88  E-value=0.0073  Score=49.70  Aligned_cols=24  Identities=42%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.88  E-value=0.012  Score=48.12  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+-|+|..|+|||.|++.+++.
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~   57 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANE   57 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3556789999999999999999994

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.88  E-value=0.018  Score=44.66  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +++.++|..|+|||||...+..+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            588999999999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.87  E-value=0.0075  Score=48.85  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=95.87  E-value=0.011  Score=53.28  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-.-.... -..   .-+-....-+-++|+.|+|||+||+.|.+.
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~-~~~---~~gi~~p~gVLL~GPPGTGKT~LAraIA~e  240 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPE-LYD---DIGIKPPKGVILYGPPGTGKTLLAKAVANE  240 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHH-HHH---hcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            578999888888776632100000 000   000122445779999999999999999994

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.87  E-value=0.007  Score=49.75  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|+|||||++.+..-
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999999985

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.87  E-value=0.0069  Score=49.90  Aligned_cols=24  Identities=42%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999874

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=95.86  E-value=0.031  Score=48.33  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC----CceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF----DKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F----d~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-.++-|+|..|+|||+|+.++.-.......+    ..++||..-..|++.+|.+
T Consensus       100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~  155 (317)
T PRK04301        100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ  155 (317)
T ss_pred             cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence            347799999999999999999987542221111    3689999999888877654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.86  E-value=0.011  Score=53.78  Aligned_cols=45  Identities=29%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-...|..++..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        19 dvVGQe~iv~~L~~~i~~~r----------------i~ha~Lf~GP~GtGKTTlAriLAk~   63 (484)
T PRK14956         19 DVIHQDLAIGALQNALKSGK----------------IGHAYIFFGPRGVGKTTIARILAKR   63 (484)
T ss_pred             HHhChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            68898888888888886544                1346789999999999999999774

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.85  E-value=0.0092  Score=51.64  Aligned_cols=26  Identities=31%  Similarity=0.593  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.++|+.|+||||++..+...
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~  137 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHK  137 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34789999999999999999998764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.84  E-value=0.017  Score=48.11  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             hHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          169 LQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       169 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +..+++..|....               .+..+|+|.|++|+||+||.-.+-..
T Consensus        14 ~~~~ll~~l~~~~---------------g~a~~iGiTG~PGaGKSTli~~l~~~   52 (266)
T PF03308_consen   14 EARELLKRLYPHT---------------GRAHVIGITGPPGAGKSTLIDALIRE   52 (266)
T ss_dssp             HHHHHHHHHGGGT---------------T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc---------------CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence            4566777776533               45789999999999999999887663

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.83  E-value=0.0076  Score=49.50  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.0077  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         28 GETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999975

>PRK05642 DNA replication initiation factor; Validated

Probab=95.81  E-value=0.01  Score=49.03  Aligned_cols=38  Identities=13%  Similarity=0.251  Sum_probs=26.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ...+-|+|..|+|||.|++.+++..  ...-..+++++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~   82 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLA   82 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHH
Confidence            4678899999999999999998742  2211234566543

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=95.81  E-value=0.037  Score=47.17  Aligned_cols=54  Identities=20%  Similarity=0.162  Sum_probs=40.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccc-----ccCCCceEEEEeCCCCCHHHHHHHhC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVV-----SAHFDKKIWVCVSEPFDDIRIAKAIL  251 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-----~~~Fd~~~wV~Vs~~~~~~~i~~~Il  251 (251)
                      ....-+-|||..|.||||++++.....-.     ...+ .++-|.+...++...+...||
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL  117 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAIL  117 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHH
Confidence            44667999999999999999998864211     1122 567788889999999887775

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=95.81  E-value=0.0092  Score=48.20  Aligned_cols=54  Identities=24%  Similarity=0.257  Sum_probs=35.5

Q ss_pred             eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918          164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC  236 (251)
Q Consensus       164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~  236 (251)
                      .++..+....++.|..                   ..++.+.|++|.|||.||-..--+.-..+.|+..+++.
T Consensus         3 ~p~~~~Q~~~~~al~~-------------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R   56 (205)
T PF02562_consen    3 KPKNEEQKFALDALLN-------------------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR   56 (205)
T ss_dssp             ---SHHHHHHHHHHHH--------------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred             cCCCHHHHHHHHHHHh-------------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            3455566677777762                   45899999999999999988776644456788877764

; GO: 0005524 ATP binding; PDB: 3B85_A.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.81  E-value=0.0077  Score=49.80  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        26 GEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.80  E-value=0.015  Score=49.96  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|.|.+|+|||||+..+...
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~   57 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGME   57 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999997763

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.80  E-value=0.008  Score=49.80  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295          27 GEFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=95.79  E-value=0.0082  Score=49.03  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         28 GEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999875

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.79  E-value=0.0086  Score=48.11  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         27 GGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999999885

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.77  E-value=0.0089  Score=47.92  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999885

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.77  E-value=0.0082  Score=50.35  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=95.76  E-value=0.008  Score=48.34  Aligned_cols=20  Identities=30%  Similarity=0.497  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 046918          201 IISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~  220 (251)
                      +++|+|..|+|||||++.++
T Consensus        24 ~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999999987

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.76  E-value=0.0074  Score=46.24  Aligned_cols=22  Identities=41%  Similarity=0.696  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +|++.|.+|+||||++..+...
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~   22 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITA   22 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999887654

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.76  E-value=0.0086  Score=48.48  Aligned_cols=24  Identities=38%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd00879 Sar1 Sar1 subfamily

Probab=95.76  E-value=0.0088  Score=47.32  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|.|+|.+|+|||||++.+.++
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            44599999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.75  E-value=0.012  Score=54.42  Aligned_cols=44  Identities=34%  Similarity=0.483  Sum_probs=36.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-+..+.+.+..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        17 diiGq~~~v~~L~~~i~~~r----------------l~ha~Lf~Gp~GvGKTTlAr~lAk   60 (546)
T PRK14957         17 EVAGQQHALNSLVHALETQK----------------VHHAYLFTGTRGVGKTTLGRLLAK   60 (546)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence            68899998988988886543                245577899999999999999876

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.75  E-value=0.0088  Score=48.30  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999874

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03689 pup_AAA proteasome ATPase

Probab=95.74  E-value=0.019  Score=52.75  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCC-CccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESS-TVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-.--.. .-...+     -...+-+-++|+.|+|||++|+.+++.
T Consensus       183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-----l~~p~GILLyGPPGTGKT~LAKAlA~e  239 (512)
T TIGR03689       183 DIGGLDSQIEQIRDAVELPFLHPELYREYD-----LKPPKGVLLYGPPGCGKTLIAKAVANS  239 (512)
T ss_pred             HcCChHHHHHHHHHHHHHHhhCHHHHHhcc-----CCCCcceEEECCCCCcHHHHHHHHHHh
Confidence            67889999888877653210000 000000     122455889999999999999999995

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.73  E-value=0.021  Score=51.26  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.++|..|+||||++.++..
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999988865

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.73  E-value=0.0091  Score=47.70  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999963

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.73  E-value=0.0093  Score=48.20  Aligned_cols=24  Identities=46%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         28 GEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999885

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.73  E-value=0.0088  Score=49.86  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999985

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.73  E-value=0.014  Score=52.25  Aligned_cols=44  Identities=30%  Similarity=0.480  Sum_probs=35.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.+.+++..+.                -...+-++|+.|+||||+|..+.+
T Consensus        17 eiiGq~~~~~~L~~~~~~~~----------------~~ha~lf~Gp~G~GKtt~A~~~a~   60 (397)
T PRK14955         17 DITAQEHITRTIQNSLRMGR----------------VGHGYIFSGLRGVGKTTAARVFAK   60 (397)
T ss_pred             hccChHHHHHHHHHHHHhCC----------------cceeEEEECCCCCCHHHHHHHHHH
Confidence            68898888888888776543                134577899999999999988765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.72  E-value=0.009  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        34 Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        34 GECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.72  E-value=0.0096  Score=46.69  Aligned_cols=24  Identities=46%  Similarity=0.582  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.72  E-value=0.0083  Score=44.59  Aligned_cols=27  Identities=33%  Similarity=0.628  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCcccccCCC
Q 046918          202 ISITGMGGIGKTTLARLIFNDNVVSAHFD  230 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d~~v~~~Fd  230 (251)
                      +-++|..|+||||||+.+..  .+...|.
T Consensus         2 vLleg~PG~GKT~la~~lA~--~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALAR--SLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence            45899999999999999988  4555663

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.71  E-value=0.0099  Score=45.22  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.71  E-value=0.016  Score=50.34  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+..+|+|.|..|+|||||+..+..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998665

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.71  E-value=0.009  Score=49.90  Aligned_cols=24  Identities=33%  Similarity=0.589  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         30 GKILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999975

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.71  E-value=0.0088  Score=49.70  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972        27 NQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999763

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.70  E-value=0.017  Score=45.26  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.70  E-value=0.0092  Score=49.70  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         29 KSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999963

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.70  E-value=0.024  Score=48.21  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+..+|.|.|..|+|||||+..+.+.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999998884

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.69  E-value=0.012  Score=49.82  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...++|.++|++|+||||++.++..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3478999999999999998888765

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.69  E-value=0.0093  Score=49.64  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         29 NTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.69  E-value=0.0099  Score=46.93  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999984

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.68  E-value=0.036  Score=46.61  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046918          202 ISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      +-+.|..|+|||+||+.+.+  ....   ..+.++.+...+..++
T Consensus        24 vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl   63 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL   63 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence            34899999999999999986  2211   3345555555554444

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.68  E-value=0.0094  Score=49.16  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          28 GEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.68  E-value=0.0095  Score=49.37  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.67  E-value=0.0096  Score=49.20  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        47 Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          47 GEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999874

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=95.67  E-value=0.0099  Score=44.58  Aligned_cols=22  Identities=36%  Similarity=0.521  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCc
Q 046918          202 ISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      |.|+|.+|+|||||++.+.+..
T Consensus         3 v~liG~~~vGKSsL~~~l~~~~   24 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQGEE   24 (142)
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            7899999999999999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.67  E-value=0.018  Score=45.76  Aligned_cols=23  Identities=39%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -..+.|+|..|.|||||++.+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999998775

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3899 Predicted ATPase [General function prediction only]

Probab=95.67  E-value=0.012  Score=57.63  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++||+.+.+.|...+..-.              ...-.++.+.|..|+|||+|++.|..-
T Consensus         2 l~GRe~ev~~Ll~~f~~v~--------------~g~~~~~lv~G~sGIGKsalv~ev~~~   47 (849)
T COG3899           2 LYGRETELAQLLAAFDRVS--------------KGRGEVVLVAGESGIGKSALVNEVHKP   47 (849)
T ss_pred             CCchHhHHHHHHHHHHHHh--------------CCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence            7899999999999887654              344669999999999999999999984

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=95.66  E-value=0.01  Score=48.40  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      .-.+++++|..|+|||||.+.|..-.+
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~   54 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVR   54 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            356999999999999999999999543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.66  E-value=0.011  Score=46.05  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.66  E-value=0.0094  Score=41.17  Aligned_cols=22  Identities=50%  Similarity=0.768  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.+.|.+|+||||++..+...
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~   22 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAA   22 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988874

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.65  E-value=0.0098  Score=49.79  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         30 RSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999999999974

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.65  E-value=0.0097  Score=49.24  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         29 GEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999885

>PRK08116 hypothetical protein; Validated

Probab=95.64  E-value=0.0098  Score=50.22  Aligned_cols=36  Identities=31%  Similarity=0.244  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      .+-++|..|+|||.||..|++.  ...+--.+++++++
T Consensus       116 gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~~  151 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNFP  151 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence            4789999999999999999995  33333345666654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.64  E-value=0.01  Score=49.52  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         31 QEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999875

>PLN02200 adenylate kinase family protein

Probab=95.64  E-value=0.012  Score=48.64  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.|.|+.|+||||+|+.+..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999876

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.64  E-value=0.01  Score=48.15  Aligned_cols=24  Identities=42%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.++..
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        24 GEIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            568999999999999999999985

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.64  E-value=0.011  Score=46.82  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~   49 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGL   49 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999885

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13946 shikimate kinase; Provisional

Probab=95.64  E-value=0.009  Score=47.42  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.|.++|+.|+||||+++.+.+.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~   33 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATM   33 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999774

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.64  E-value=0.01  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        19 Ge~~~l~G~NGaGKSTLl~~l~Gl   42 (302)
T TIGR01188        19 GEVFGFLGPNGAGKTTTIRMLTTL   42 (302)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.63  E-value=0.011  Score=46.25  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~   51 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRL   51 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            458999999999999999999884

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.63  E-value=0.011  Score=46.13  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999985

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.63  E-value=0.01  Score=49.37  Aligned_cols=24  Identities=42%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         29 GEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.62  E-value=0.01  Score=49.06  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999874

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.62  E-value=0.013  Score=45.87  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....||...|.+|.||||+|..++..
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~   46 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEK   46 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence            34689999999999999999999873

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.62  E-value=0.0097  Score=50.07  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         37 GKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            459999999999999999999874

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.62  E-value=0.01  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        38 Ge~~~l~G~nGsGKSTLl~~l~G   60 (259)
T PRK14274         38 NEVTAIIGPSGCGKSTFIKTLNL   60 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999975

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.62  E-value=0.013  Score=52.20  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...-||+|.|..|+|||||++.+..
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~  234 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDY  234 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999999965

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.61  E-value=0.011  Score=47.53  Aligned_cols=24  Identities=38%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999874

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PLN02924 thymidylate kinase

Probab=95.61  E-value=0.032  Score=45.68  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..-..|.|-|..|+||||+++.+.+.-
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l   40 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFL   40 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999999853

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=95.61  E-value=0.034  Score=48.61  Aligned_cols=52  Identities=21%  Similarity=0.164  Sum_probs=38.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccc---c-CCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVS---A-HFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~-~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-+++=|+|..|+|||+|+..++-.....   . .-..++||.--.+|++.+|.+
T Consensus       124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~  179 (344)
T PLN03187        124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP  179 (344)
T ss_pred             CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH
Confidence            446788899999999999999875322221   1 124678999999898887765

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.60  E-value=0.01  Score=50.05  Aligned_cols=24  Identities=54%  Similarity=0.636  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (269)
T PRK11831         33 GKITAIMGPSGIGKTTLLRLIGGQ   56 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.60  E-value=0.011  Score=47.81  Aligned_cols=24  Identities=42%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~l~gl   47 (211)
T cd03298          24 GEITAIVGPSGSGKSTLLNLIAGF   47 (211)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.60  E-value=0.01  Score=49.37  Aligned_cols=23  Identities=39%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         31 NEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999964

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=95.59  E-value=0.029  Score=48.45  Aligned_cols=52  Identities=19%  Similarity=0.151  Sum_probs=37.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-+++-|+|..|+|||+|+..+.-......    .=..++||..-..|++.+|.+
T Consensus        94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~  149 (313)
T TIGR02238        94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA  149 (313)
T ss_pred             cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH
Confidence            4478999999999999999988653222211    113678999988888887754

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.017  Score=48.63  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        35 Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         35 GQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999874

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.59  E-value=0.011  Score=49.68  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        39 Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         39 NQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999863

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.59  E-value=0.01  Score=47.75  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          33 GEMVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             CcEEEEECCCCCCHHHHHHHhccc
Confidence            469999999999999999999885

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.01  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649         33 GSYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=95.59  E-value=0.016  Score=50.75  Aligned_cols=43  Identities=21%  Similarity=0.316  Sum_probs=34.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-+..|+..+.+..                 ++-+-|.|..|+||||+|+.+++
T Consensus        18 ~ivGq~~~k~al~~~~~~p~-----------------~~~vli~G~~GtGKs~~ar~~~~   60 (350)
T CHL00081         18 AIVGQEEMKLALILNVIDPK-----------------IGGVMIMGDRGTGKSTTIRALVD   60 (350)
T ss_pred             HHhChHHHHHHHHHhccCCC-----------------CCeEEEEcCCCCCHHHHHHHHHH
Confidence            68999987877777665543                 55556999999999999999965

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.58  E-value=0.011  Score=48.59  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        26 GEVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.58  E-value=0.01  Score=50.09  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSGL   50 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999874

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.58  E-value=0.011  Score=48.39  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      --.|+|+|..|.|||||.+.+..
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999999987

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.58  E-value=0.011  Score=49.47  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         32 GEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999985

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.58  E-value=0.011  Score=49.44  Aligned_cols=24  Identities=42%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619         31 GDVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999885

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.58  E-value=0.011  Score=49.32  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         30 NSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999874

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.57  E-value=0.012  Score=46.44  Aligned_cols=24  Identities=38%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999885

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.57  E-value=0.011  Score=48.08  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      +.+++|+|+.|.|||||.+.|.
T Consensus        25 ~~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          25 KSFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999976

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.56  E-value=0.018  Score=51.38  Aligned_cols=56  Identities=18%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCC-CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSES-STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-.-.. ..-...|     -...+-+-++|+.|+|||+||+.+.+.
T Consensus       146 digGl~~~k~~l~~~v~~pl~~~~~~~~~G-----l~~pkgvLL~GppGTGKT~LAkalA~~  202 (398)
T PTZ00454        146 DIGGLDIQKQEIREAVELPLTCPELYEQIG-----IDPPRGVLLYGPPGTGKTMLAKAVAHH  202 (398)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-----CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            6889998888887765311000 0000000     123567889999999999999999984

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.56  E-value=0.013  Score=51.71  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.++.++|+.|+||||++.++...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999998874

>cd01858 NGP_1 NGP-1

Probab=95.56  E-value=0.025  Score=43.46  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      -..|+++|+.|+||+||...+..+..
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            35678999999999999999988643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.56  E-value=0.011  Score=49.90  Aligned_cols=24  Identities=42%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        50 Ge~~~l~G~nGsGKSTLl~~L~Gl   73 (269)
T cd03294          50 GEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            469999999999999999999874

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=95.56  E-value=0.011  Score=45.46  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|.|+|.+|+|||||+..+..+
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~   26 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSG   26 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45789999999999999988653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.56  E-value=0.011  Score=48.06  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          30 GEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            568999999999999999999874

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.56  E-value=0.0099  Score=53.08  Aligned_cols=26  Identities=27%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.+.|+|+|..|+|||||++.+.+.
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            45889999999999999999998874

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.55  E-value=0.019  Score=53.35  Aligned_cols=44  Identities=32%  Similarity=0.463  Sum_probs=34.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+...+....                 ..-+-|+|..|+||||+|+.+++.
T Consensus        66 ~iiGqs~~i~~l~~al~~~~-----------------~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGPN-----------------PQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence            58999988888887765433                 234568999999999999999863

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.011  Score=49.27  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         30 NGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999864

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.011  Score=49.97  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056         33 GSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.55  E-value=0.012  Score=48.12  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234          33 GQVMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCc
Confidence            468999999999999999999874

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.55  E-value=0.011  Score=48.67  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          29 GKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhcc
Confidence            569999999999999999999975

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.54  E-value=0.012  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005        26 GEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.54  E-value=0.012  Score=48.50  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07429 phosphoribulokinase; Provisional

Probab=95.53  E-value=0.014  Score=50.62  Aligned_cols=26  Identities=31%  Similarity=0.555  Sum_probs=23.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...-+|+|.|..|+|||||++.+..-
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~l   31 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADL   31 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence            45789999999999999999998865

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.53  E-value=0.012  Score=48.23  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|+|||||++.+...
T Consensus        48 Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          48 GERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13948 shikimate kinase; Provisional

Probab=95.52  E-value=0.014  Score=46.37  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+.|.++||.|+||||+++.+.+.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~   33 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRA   33 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999998763

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=95.52  E-value=0.012  Score=49.80  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        50 Ge~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         50 NEVTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            459999999999999999999863

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.51  E-value=0.011  Score=50.31  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        37 Ge~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         37 NKVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.50  E-value=0.018  Score=53.68  Aligned_cols=44  Identities=25%  Similarity=0.476  Sum_probs=36.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.+.+.+..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        17 dIIGQe~iv~~L~~aI~~~r----------------l~hA~Lf~GP~GvGKTTlA~~lAk   60 (605)
T PRK05896         17 QIIGQELIKKILVNAILNNK----------------LTHAYIFSGPRGIGKTSIAKIFAK   60 (605)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHH
Confidence            68899999999988886543                135678999999999999998765

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.50  E-value=0.012  Score=48.40  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~i~Gl   50 (236)
T cd03253          27 GKKVAIVGPSGSGKSTILRLLFRF   50 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999974

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.49  E-value=0.012  Score=49.57  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        45 Ge~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         45 KTVTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999863

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.49  E-value=0.012  Score=47.80  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.++.-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~i~G~   50 (218)
T cd03290          27 GQLTMIVGQVGCGKSSLLLAILGE   50 (218)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            459999999999999999999975

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.49  E-value=0.012  Score=48.94  Aligned_cols=23  Identities=48%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         29 NQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999995

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.48  E-value=0.016  Score=45.92  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|.|..|+||||||+.+...
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~~   41 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEKK   41 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999999874

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=95.48  E-value=0.021  Score=49.86  Aligned_cols=43  Identities=16%  Similarity=0.269  Sum_probs=34.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-+..++-.+.+..                 ..-+.|.|..|+|||||++.+..
T Consensus         5 ~ivgq~~~~~al~~~~~~~~-----------------~g~vli~G~~G~gKttl~r~~~~   47 (337)
T TIGR02030         5 AIVGQDEMKLALLLNVIDPK-----------------IGGVMVMGDRGTGKSTAVRALAA   47 (337)
T ss_pred             ccccHHHHHHHHHHHhcCCC-----------------CCeEEEEcCCCCCHHHHHHHHHH
Confidence            57898888888766666533                 44566999999999999999964

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.48  E-value=0.021  Score=46.45  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          30 GEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            458999999999999999999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=95.48  E-value=0.012  Score=49.15  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~i~G~   50 (256)
T TIGR03873        27 GSLTGLLGPNGSGKSTLLRLLAGA   50 (256)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.48  E-value=0.019  Score=52.46  Aligned_cols=44  Identities=32%  Similarity=0.468  Sum_probs=34.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.+.+.+..+.                -..-+-++|+.|+||||+|+.+..
T Consensus        14 dliGQe~vv~~L~~a~~~~r----------------i~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         14 DLVGQDVLVRILRNAFTLNK----------------IPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCccHHHHHHHHHH
Confidence            68999888888887776543                134788999999999999988754

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.47  E-value=0.017  Score=55.98  Aligned_cols=45  Identities=33%  Similarity=0.478  Sum_probs=37.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-++.|.+++..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        17 dIIGQe~Iv~~LknaI~~~r----------------l~HAyLFtGPpGtGKTTLARiLAk~   61 (944)
T PRK14949         17 QMVGQSHVLHALTNALTQQR----------------LHHAYLFTGTRGVGKTSLARLFAKG   61 (944)
T ss_pred             HhcCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999998886544                1445679999999999999998875

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.47  E-value=0.012  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022         33 GEVVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            458999999999999999999884

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.47  E-value=0.033  Score=48.17  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=36.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~  247 (251)
                      ..-.++-|+|..|+|||||+..++-......    .-..++|+.--..|+..+|.
T Consensus        94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~  148 (316)
T TIGR02239        94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL  148 (316)
T ss_pred             CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence            4478999999999999999998875322211    12356898888877776653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.47  E-value=0.022  Score=53.67  Aligned_cols=44  Identities=34%  Similarity=0.550  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-.+.|.+++..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        16 dVIGQe~vv~~L~~aI~~gr----------------l~HAyLF~GPpGvGKTTlAriLAK   59 (702)
T PRK14960         16 ELVGQNHVSRALSSALERGR----------------LHHAYLFTGTRGVGKTTIARILAK   59 (702)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999887544                246778999999999999998765

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.46  E-value=0.014  Score=47.26  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=22.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|.+|+|+.|.|||||.+.++.+
T Consensus        27 Gev~ailGPNGAGKSTlLk~LsGe   50 (259)
T COG4559          27 GEVLAILGPNGAGKSTLLKALSGE   50 (259)
T ss_pred             CcEEEEECCCCccHHHHHHHhhCc
Confidence            459999999999999999999986

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.012  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        47 Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         47 HAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999975

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.013  Score=48.97  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         33 NSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            459999999999999999999863

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.46  E-value=0.013  Score=49.21  Aligned_cols=24  Identities=33%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~i~G~   51 (258)
T PRK13548         28 GEVVAILGPNGAGKSTLLRALSGE   51 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.45  E-value=0.013  Score=49.54  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        39 Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         39 GKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999764

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=95.45  E-value=0.012  Score=48.94  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         33 GEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCC
Confidence            459999999999999999999873

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.45  E-value=0.012  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~I~G~nGaGKSTLl~~l~G~   56 (282)
T PRK13640         33 GSWTALIGHNGSGKSTISKLINGL   56 (282)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcc
Confidence            459999999999999999999974

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.45  E-value=0.013  Score=48.85  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+.+|+|..|.|||||+..|+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~   46 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAIC   46 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            6789999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.45  E-value=0.012  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         35 GEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999885

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=95.45  E-value=0.034  Score=48.62  Aligned_cols=52  Identities=19%  Similarity=0.194  Sum_probs=38.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-.++-|+|..|+|||+|+..++-......    .=..++||..-..|++.+|.+
T Consensus       121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q  176 (342)
T PLN03186        121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ  176 (342)
T ss_pred             cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH
Confidence            4477899999999999999998775322211    113689999999988887654

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=95.44  E-value=0.013  Score=49.12  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~IvG~nGsGKSTLlk~l~Gl   49 (255)
T cd03236          26 GQVLGLVGPNGIGKSTALKILAGK   49 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999885

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=95.44  E-value=0.017  Score=45.82  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.+.-|+|+|.+|+|||||.+.+.+.
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            45778999999999999999999985

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.44  E-value=0.013  Score=47.60  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999999885

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.44  E-value=0.032  Score=49.80  Aligned_cols=57  Identities=25%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             ceeccchhHHHHHHHhcCC-CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSG-SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.++.++.+.-.+... ......+ ....   ....+-|-++|+.|+||||||+.+...
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~-~~~~---e~~p~~ILLiGppG~GKT~lAraLA~~   70 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNE-ELKD---EVTPKNILMIGPTGVGKTEIARRLAKL   70 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhcccc-cccc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4788888888876555532 0000000 0000   122467889999999999999999884

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.43  E-value=0.013  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (255)
T PRK11231         28 GKITALIGPNGCGKSTLLKCFARL   51 (255)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=95.43  E-value=0.013  Score=48.97  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418         29 GRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.43  E-value=0.013  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|+|||||++.+..
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         32 NRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999984

>PF13245 AAA_19: Part of AAA domain

Probab=95.43  E-value=0.024  Score=38.19  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             CEEEEEEcCCCCcHH-HHHHHHhc
Q 046918          199 PIIISITGMGGIGKT-TLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKT-TLa~~v~~  221 (251)
                      -++..|.|.+|.||| |+++.+..
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456778999999999 56665555

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.43  E-value=0.023  Score=46.53  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          29 GETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.42  E-value=0.013  Score=48.19  Aligned_cols=24  Identities=38%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         25 GERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999774

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=95.42  E-value=0.013  Score=47.71  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      -.+++|+|..|.|||||++.|.
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe
Confidence            3489999999999999999986

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.42  E-value=0.012  Score=49.05  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++++||-.|+|||||++.|-.
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~   61 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILG   61 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHc
Confidence            56899999999999999999988

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.42  E-value=0.013  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        46 Ge~~~IiG~nGsGKSTLl~~l~G   68 (274)
T PRK14265         46 KKIIAFIGPSGCGKSTLLRCFNR   68 (274)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999985

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=95.41  E-value=0.013  Score=49.21  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~l~G   58 (264)
T PRK14243         36 NQITAFIGPSGCGKSTILRCFNR   58 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999984

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=95.41  E-value=0.013  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        46 Ge~~~I~G~nGsGKSTLl~~l~Gl   69 (267)
T PRK14237         46 NKITALIGPSGSGKSTYLRSLNRM   69 (267)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999874

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.41  E-value=0.024  Score=46.34  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (223)
T TIGR03740        26 NSVYGLLGPNGAGKSTLLKMITGI   49 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.41  E-value=0.014  Score=49.62  Aligned_cols=24  Identities=42%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (279)
T PRK13650         33 GEWLSIIGHNGSGKSTTVRLIDGL   56 (279)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999974

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=95.40  E-value=0.013  Score=48.56  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         27 GEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999985

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.014  Score=48.69  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         31 NEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999965

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.014  Score=48.51  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         28 NKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.39  E-value=0.036  Score=48.01  Aligned_cols=45  Identities=24%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      +.-+++-|+|++|+||||||..++-.  ..+.-..++||..-..++.
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~   97 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP   97 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence            44678899999999999999997763  2333456677776665554

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.014  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         29 NQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999975

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=95.38  E-value=0.014  Score=47.08  Aligned_cols=22  Identities=41%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++.|.|+.|.|||||++.|..
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            7999999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.38  E-value=0.014  Score=47.72  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        40 Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          40 GEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999875

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.37  E-value=0.014  Score=48.90  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260         33 NKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            458999999999999999999863

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=95.37  E-value=0.014  Score=51.18  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        31 Gei~gIiG~sGaGKSTLlr~I~gl   54 (343)
T TIGR02314        31 GQIYGVIGASGAGKSTLIRCVNLL   54 (343)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999885

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.36  E-value=0.029  Score=50.23  Aligned_cols=24  Identities=38%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-|+|..|+|||+|++.+++.
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~  159 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNE  159 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456889999999999999999995

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.36  E-value=0.014  Score=49.41  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~laG~   50 (272)
T PRK13547         27 GRVTALLGRNGAGKSTLLKALAGD   50 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=95.36  E-value=0.014  Score=47.13  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+++|+|..|.|||||...|+
T Consensus        23 g~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          23 PLTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            499999999999999999994

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PLN02165 adenylate isopentenyltransferase

Probab=95.36  E-value=0.016  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+|.|+|+.|+||||||..+...
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~   66 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATR   66 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHH
Confidence            559999999999999999988774

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.36  E-value=0.013  Score=51.07  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -++++.|++|+|||||.+.|.-
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999977

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.014  Score=50.79  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.|..-
T Consensus        33 Ge~~~ivG~sGsGKSTLl~~i~Gl   56 (330)
T PRK15093         33 GEIRGLVGESGSGKSLIAKAICGV   56 (330)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcc
Confidence            458999999999999999999874

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.015  Score=48.49  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         30 KELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhc
Confidence            458999999999999999999864

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.34  E-value=0.014  Score=48.58  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270         30 NKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999863

>PRK09183 transposase/IS protein; Provisional

Probab=95.34  E-value=0.013  Score=49.25  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+.|+|+.|+|||+||..+.+.
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999764

>PRK14974 cell division protein FtsY; Provisional

Probab=95.34  E-value=0.016  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.++|+.|+||||++.++..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999997777765

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=95.33  E-value=0.014  Score=51.09  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        31 Gei~~iiG~nGsGKSTLlk~L~Gl   54 (343)
T PRK11153         31 GEIFGVIGASGAGKSTLIRCINLL   54 (343)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.33  E-value=0.015  Score=49.07  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        50 Ge~~~liG~NGsGKSTLlk~L~Gl   73 (264)
T PRK13546         50 GDVIGLVGINGSGKSTLSNIIGGS   73 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.32  E-value=0.026  Score=49.59  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=24.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+.+++|||+.|+|||.+|+.|++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~e  171 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKK  171 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            55889999999999999999999995

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.014  Score=49.08  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~i~G~   56 (265)
T PRK10253         33 GHFTAIIGPNGCGKSTLLRTLSRL   56 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            459999999999999999999885

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.32  E-value=0.041  Score=40.76  Aligned_cols=51  Identities=24%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+--.+.+++.+.+--.+.          .....-|++..|..|+|||.+++.|.++
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~----------~p~KpLVlSfHG~tGtGKn~v~~liA~~   76 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANP----------NPRKPLVLSFHGWTGTGKNFVSRLIAEH   76 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCC----------CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence            57787655555555554321000          0366889999999999999987777654

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.32  E-value=0.015  Score=45.42  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ---|+|.|+.|.||+||.+.|++
T Consensus        29 Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHh
Confidence            34689999999999999999998

>TIGR02012 tigrfam_recA protein RecA

Probab=95.32  E-value=0.041  Score=47.59  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      +.-+++-|+|+.|+||||||..+...  ..+.=..++||..-+.++.
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~   97 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP   97 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence            44679999999999999998886663  2233345567765554443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=95.30  E-value=0.065  Score=45.40  Aligned_cols=50  Identities=24%  Similarity=0.214  Sum_probs=41.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      +.-+|+=|+|+.|.||||||-+++-.  ++..-..++||.--+.|++..+..
T Consensus        58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~  107 (279)
T COG0468          58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ  107 (279)
T ss_pred             ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence            55789999999999999999998874  555555889999999999887653

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=95.29  E-value=0.031  Score=43.65  Aligned_cols=24  Identities=25%  Similarity=0.337  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...|.++|.+|+|||||...+...
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~   38 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLG   38 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccC
Confidence            346779999999999999999764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.29  E-value=0.016  Score=48.77  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T TIGR02769        37 GETVGLLGRSGCGKSTLARLLLGL   60 (265)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999885

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.28  E-value=0.017  Score=44.36  Aligned_cols=24  Identities=38%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~   48 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGL   48 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            369999999999999999999985

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.28  E-value=0.016  Score=48.25  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK14266         29 NSVTALIGPSGCGKSTFIRTLNR   51 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999985

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.28  E-value=0.015  Score=47.96  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~   54 (237)
T PRK11614         31 GEIVTLIGANGAGKTTLLGTLCGD   54 (237)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999874

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.27  E-value=0.018  Score=52.46  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.|++++|+.|+||||++.++...
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHH
Confidence            479999999999999999999874

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.26  E-value=0.016  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~i~Gl   51 (275)
T PRK13639         28 GEMVALLGPNGAGKSTLFLHFNGI   51 (275)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999874

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.26  E-value=0.023  Score=52.43  Aligned_cols=45  Identities=31%  Similarity=0.390  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|-+.-++.|.+++..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        17 divGq~~v~~~L~~~~~~~~----------------l~ha~Lf~Gp~G~GKTt~A~~lAk~   61 (509)
T PRK14958         17 EVIGQAPVVRALSNALDQQY----------------LHHAYLFTGTRGVGKTTISRILAKC   61 (509)
T ss_pred             HhcCCHHHHHHHHHHHHhCC----------------CCeeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999996644                1346778999999999999887763

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=95.26  E-value=0.016  Score=47.96  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~G~   51 (242)
T TIGR03411        28 GELRVIIGPNGAGKTTMMDVITGK   51 (242)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=95.26  E-value=0.016  Score=49.79  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~l~G~NGaGKSTLl~~l~Gl   53 (303)
T TIGR01288        30 GECFGLLGPNGAGKSTIARMLLGM   53 (303)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.25  E-value=0.016  Score=48.15  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (249)
T PRK14253         29 RQVTALIGPSGCGKSTLLRCLNRM   52 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            459999999999999999999763

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.25  E-value=0.023  Score=36.59  Aligned_cols=20  Identities=45%  Similarity=0.547  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 046918          201 IISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~  220 (251)
                      +..|.|..|+|||||.-.+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999997654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=95.25  E-value=0.022  Score=44.76  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|.|+|..|+|||||...+.+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~   42 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRK   42 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            446688999999999999999998863

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=95.25  E-value=0.025  Score=45.37  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -++..|.|.+|+||||+++.+..-
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~   41 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEA   41 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHH
Confidence            357888999999999999998773

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.25  E-value=0.016  Score=48.82  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        39 Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112         39 GQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=95.24  E-value=0.017  Score=47.79  Aligned_cols=24  Identities=33%  Similarity=0.510  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~   49 (237)
T TIGR00968        26 GSLVALLGPSGSGKSTLLRIIAGL   49 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999874

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.24  E-value=0.015  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+.+|+|+.|.|||||++.|+
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.24  E-value=0.027  Score=52.92  Aligned_cols=42  Identities=36%  Similarity=0.553  Sum_probs=34.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      +++|-+.-+..|.+++..+.                -...+-++|..|+||||+|+.+
T Consensus        17 dviGQe~vv~~L~~~l~~~r----------------l~ha~Lf~Gp~GvGKTtlAr~l   58 (618)
T PRK14951         17 EMVGQEHVVQALTNALTQQR----------------LHHAYLFTGTRGVGKTTVSRIL   58 (618)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHH
Confidence            68898888888888887644                2456789999999999999998

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.24  E-value=0.019  Score=51.24  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++.++|++|+||||++.++...
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~  246 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAK  246 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999998763

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.23  E-value=0.016  Score=49.36  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        65 Ge~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         65 KYVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45999999999999999999986

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.23  E-value=0.017  Score=49.29  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        33 Ge~~~iiG~NGaGKSTLl~~l~Gl   56 (287)
T PRK13641         33 GSFVALVGHTGSGKSTLMQHFNAL   56 (287)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999975

>PRK08181 transposase; Validated

Probab=95.23  E-value=0.012  Score=49.63  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918          201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV  237 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V  237 (251)
                      -+-++|+.|+|||.||..+.+.  .....-.++++++
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~  142 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT  142 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence            4889999999999999999884  3333334566665

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.23  E-value=0.017  Score=49.27  Aligned_cols=24  Identities=33%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.++..
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~L~Gl   56 (286)
T PRK13646         33 GKYYAIVGQTGSGKSTLIQNINAL   56 (286)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999985

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=95.23  E-value=0.048  Score=45.74  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=38.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccC---C-CceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAH---F-DKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~---F-d~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-.|.=|+|.+|+|||.|+-.+.-+..+...   . ..++|+.-...|+..++.+
T Consensus        36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~   91 (256)
T PF08423_consen   36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ   91 (256)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred             CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence            34679999999999999999877654332221   1 2578999999999888754

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=95.22  E-value=0.016  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+..-
T Consensus        22 Gei~~l~G~nGsGKSTLl~~l~Gl   45 (248)
T PRK03695         22 GEILHLVGPNGAGKSTLLARMAGL   45 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            459999999999999999998864

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.22  E-value=0.017  Score=47.47  Aligned_cols=25  Identities=44%  Similarity=0.586  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..-.+.+|+|..|+|||||.+.|-.
T Consensus        32 ~~Gei~~iiGgSGsGKStlLr~I~G   56 (263)
T COG1127          32 PRGEILAILGGSGSGKSTLLRLILG   56 (263)
T ss_pred             cCCcEEEEECCCCcCHHHHHHHHhc
Confidence            3456999999999999999999987

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.22  E-value=0.017  Score=48.96  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~i~G~NGsGKSTLl~~l~Gl   53 (277)
T PRK13652         30 NSRIAVIGPNGAGKSTLFRHFNGI   53 (277)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999975

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.22  E-value=0.023  Score=50.97  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++++|..|+||||++.++..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999997765

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.22  E-value=0.017  Score=48.88  Aligned_cols=24  Identities=38%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (274)
T PRK13644         28 GEYIGIIGKNGSGKSTLALHLNGL   51 (274)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999985

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.21  E-value=0.028  Score=46.80  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=27.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ...+-++|.+|+|||+||..|.+..  ...-..+++++++
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~~  136 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITVA  136 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEHH
Confidence            4478899999999999999999953  2222345566553

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.21  E-value=0.017  Score=48.18  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323        29 GEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999885

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=95.21  E-value=0.016  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~i~G~   53 (262)
T PRK09984         30 GEMVALLGPSGSGKSTLLRHLSGL   53 (262)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.21  E-value=0.017  Score=48.98  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        47 Ge~~~I~G~nGsGKSTLl~~l~Gl   70 (276)
T PRK14271         47 RAVTSLMGPTGSGKTTFLRTLNRM   70 (276)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.21  E-value=0.017  Score=48.38  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        38 Ge~~~i~G~nGsGKSTLl~~i~Gl   61 (258)
T PRK14268         38 NSVTALIGPSGCGKSTFIRCLNRM   61 (258)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999863

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.21  E-value=0.028  Score=49.59  Aligned_cols=45  Identities=29%  Similarity=0.474  Sum_probs=37.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+...+.+.+.+..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        18 ~iig~~~~~~~l~~~i~~~~----------------~~~~~L~~G~~G~GKt~~a~~la~~   62 (367)
T PRK14970         18 DVVGQSHITNTLLNAIENNH----------------LAQALLFCGPRGVGKTTCARILARK   62 (367)
T ss_pred             hcCCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999998886543                2458889999999999999998764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.21  E-value=0.017  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (274)
T PRK13647         31 GSKTALLGPNGAGKSTLLLHLNGI   54 (274)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            469999999999999999999874

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.20  E-value=0.018  Score=46.50  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|.|||||++.+..-
T Consensus        34 G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          34 GEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999763

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=95.20  E-value=0.43  Score=46.81  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-++.+.+.+.......      +  .+......+-++|+.|+|||+||+.+.+
T Consensus       510 ~v~GQ~~ai~~l~~~i~~~~~gl------~--~~~~p~~~~lf~Gp~GvGKt~lA~~LA~  561 (821)
T CHL00095        510 RIIGQDEAVVAVSKAIRRARVGL------K--NPNRPIASFLFSGPTGVGKTELTKALAS  561 (821)
T ss_pred             cCcChHHHHHHHHHHHHHHhhcc------c--CCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            68999998888888775322000      0  0023456777899999999999988765

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.20  E-value=0.028  Score=52.90  Aligned_cols=44  Identities=32%  Similarity=0.473  Sum_probs=36.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.|.+++..+.                -...+-++|..|+||||||+.+.+
T Consensus        17 dVIGQe~vv~~L~~al~~gR----------------LpHA~LFtGP~GvGKTTLAriLAk   60 (700)
T PRK12323         17 TLVGQEHVVRALTHALEQQR----------------LHHAYLFTGTRGVGKTTLSRILAK   60 (700)
T ss_pred             HHcCcHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999887654                245678899999999999998765

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.20  E-value=0.017  Score=48.05  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        30 Ge~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272         30 GTVNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=95.19  E-value=0.017  Score=48.77  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        51 Ge~~~I~G~nGsGKSTLl~~laG   73 (272)
T PRK14236         51 NRVTAFIGPSGCGKSTLLRCFNR   73 (272)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45999999999999999999964

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.19  E-value=0.017  Score=50.22  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        41 Ge~~~IvG~sGsGKSTLl~~l~gl   64 (327)
T PRK11308         41 GKTLAVVGESGCGKSTLARLLTMI   64 (327)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            458999999999999999999885

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=95.19  E-value=0.017  Score=49.74  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~v~iiG~nGsGKSTLl~~L~Gl   56 (305)
T PRK13651         33 GEFIAIIGQTGSGKTTFIEHLNAL   56 (305)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999974

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.19  E-value=0.017  Score=45.26  Aligned_cols=24  Identities=38%  Similarity=0.500  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|++|||-.|+|||||.+.+...
T Consensus        32 GeVLgiVGESGSGKtTLL~~is~r   55 (258)
T COG4107          32 GEVLGIVGESGSGKTTLLKCISGR   55 (258)
T ss_pred             CcEEEEEecCCCcHHhHHHHHhcc
Confidence            349999999999999999998774

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=95.18  E-value=0.017  Score=50.81  Aligned_cols=24  Identities=38%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~iaGl   47 (352)
T PRK11144         24 QGITAIFGRSGAGKTSLINAISGL   47 (352)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.18  E-value=0.018  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        31 Ge~~~I~G~nGsGKSTLl~~i~G   53 (251)
T PRK14244         31 REVTAFIGPSGCGKSTFLRCFNR   53 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999975

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.17  E-value=0.026  Score=47.85  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             HHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          170 QIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       170 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      -.+++..|....               .+..||+|.|.+|+||+||.-.+-...
T Consensus        37 a~~ll~~l~p~t---------------G~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          37 ARELLRALYPRT---------------GNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHHhhcC---------------CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            356666665543               568899999999999999998877644

>TIGR00602 rad24 checkpoint protein rad24

Probab=95.16  E-value=0.032  Score=52.64  Aligned_cols=49  Identities=22%  Similarity=0.258  Sum_probs=38.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|-+...+++..+|....-+            ...-.++.++|+.|+||||+++.+.+.
T Consensus        85 el~~~~~ki~~l~~~l~~~~~~------------~~~~~illL~GP~GsGKTTl~~~la~~  133 (637)
T TIGR00602        85 ELAVHKKKIEEVETWLKAQVLE------------NAPKRILLITGPSGCGKSTTIKILSKE  133 (637)
T ss_pred             HhcCcHHHHHHHHHHHHhcccc------------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6889898889999888654310            122468999999999999999999985

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=95.15  E-value=0.026  Score=53.51  Aligned_cols=44  Identities=36%  Similarity=0.574  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-+..|.+++..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        17 dIIGQe~vv~~L~~ai~~~r----------------l~Ha~Lf~GP~GvGKTTlAriLAk   60 (709)
T PRK08691         17 DLVGQEHVVKALQNALDEGR----------------LHHAYLLTGTRGVGKTTIARILAK   60 (709)
T ss_pred             HHcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHH
Confidence            68999999999999887544                245788999999999999998766

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=95.15  E-value=0.016  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      --+++|||-.|+||||||+.+-.
T Consensus       317 GE~lglVGeSGsGKSTlar~i~g  339 (539)
T COG1123         317 GETLGLVGESGSGKSTLARILAG  339 (539)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34899999999999999999987

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.14  E-value=0.036  Score=48.46  Aligned_cols=44  Identities=30%  Similarity=0.520  Sum_probs=36.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+..++.+.+++..+.                -...+-++|+.|+||||+|+.+..
T Consensus        15 ~iig~~~~~~~l~~~~~~~~----------------~~~~~Ll~G~~G~GKt~~a~~la~   58 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNGR----------------IAHAYLFSGPRGTGKTSIARIFAK   58 (355)
T ss_pred             hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999998886543                245778999999999999987754

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.14  E-value=0.017  Score=50.30  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        42 Ge~~~ivG~sGsGKSTL~~~l~Gl   65 (330)
T PRK09473         42 GETLGIVGESGSGKSQTAFALMGL   65 (330)
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            458999999999999999999874

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=95.14  E-value=0.073  Score=50.97  Aligned_cols=44  Identities=34%  Similarity=0.513  Sum_probs=35.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.|.+++..+.                -...+-++|..|+||||+|+.+.+
T Consensus        17 EVIGQe~Vv~~L~~aL~~gR----------------L~HAyLFtGPpGvGKTTlAriLAK   60 (830)
T PRK07003         17 SLVGQEHVVRALTHALDGGR----------------LHHAYLFTGTRGVGKTTLSRIFAK   60 (830)
T ss_pred             HHcCcHHHHHHHHHHHhcCC----------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999886543                134556999999999999987665

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=95.13  E-value=0.018  Score=50.69  Aligned_cols=24  Identities=46%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        23 Gei~~l~G~nGsGKSTLl~~iaGl   46 (354)
T TIGR02142        23 QGVTAIFGRSGSGKTTLIRLIAGL   46 (354)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10867 signal recognition particle protein; Provisional

Probab=95.13  E-value=0.081  Score=47.71  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.++|..|+||||.+-++..
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999996665544

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=95.13  E-value=0.03  Score=49.47  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++|+|+|..|+|||||+..+...
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~  228 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPE  228 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHH
Confidence            4789999999999999999998874

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.11  E-value=0.021  Score=46.32  Aligned_cols=49  Identities=33%  Similarity=0.233  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc-----cccCCCceEEEEeCCCCCHHHHHHH
Q 046918          201 IISITGMGGIGKTTLARLIFNDNV-----VSAHFDKKIWVCVSEPFDDIRIAKA  249 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~~-----v~~~Fd~~~wV~Vs~~~~~~~i~~~  249 (251)
                      +..|+|++|.||||++..+-....     ....-+..+-++...+..+..++..
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~   72 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILER   72 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHH
Confidence            788899999999976666555320     1233455566666555555555544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.11  E-value=0.018  Score=48.49  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        38 Ge~~~i~G~nGsGKSTLl~~l~Gl   61 (268)
T PRK10419         38 GETVALLGRSGCGKSTLARLLVGL   61 (268)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.11  E-value=0.019  Score=47.65  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -..+.++|++|+||||+.+.|+.
T Consensus        27 gef~vliGpSGsGKTTtLkMINr   49 (309)
T COG1125          27 GEFLVLIGPSGSGKTTTLKMINR   49 (309)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            45788999999999999999988

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=95.11  E-value=0.019  Score=48.82  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        63 Ge~~~liG~NGsGKSTLl~~I~Gl   86 (282)
T cd03291          63 GEMLAITGSTGSGKTSLLMLILGE   86 (282)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.10  E-value=0.019  Score=49.76  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        52 Ge~~~I~G~nGsGKSTLl~~L~Gl   75 (320)
T PRK13631         52 NKIYFIIGNSGSGKSTLVTHFNGL   75 (320)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999984

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.10  E-value=0.019  Score=46.10  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          26 GEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999885

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.10  E-value=0.04  Score=50.10  Aligned_cols=37  Identities=30%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCC-C-ceEEEEe
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHF-D-KKIWVCV  237 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d-~~~wV~V  237 (251)
                      ..-+-|+|..|+|||+|++.+.+.  +.+.+ . .+++++.
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~  186 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS  186 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH
Confidence            456889999999999999999994  44443 2 2345544

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=95.09  E-value=0.087  Score=43.55  Aligned_cols=41  Identities=20%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHH-hcCcccccCCCceEEEEeCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLI-FNDNVVSAHFDKKIWVCVSEP  240 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v-~~d~~v~~~Fd~~~wV~Vs~~  240 (251)
                      ..-+++-|.|.+|+|||||+.++ |+-  . +.-+.++||+...+
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee~   60 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEEH   60 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeCC
Confidence            44789999999999999999875 442  2 22356788887653

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.09  E-value=0.019  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (261)
T PRK14258         33 SKVTAIIGPSGCGKSTFLKCLNRM   56 (261)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            569999999999999999999885

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=95.09  E-value=0.017  Score=44.02  Aligned_cols=26  Identities=35%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....-|-|.|.+|+|||||+..|..-
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            34667889999999999999998653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.08  E-value=0.019  Score=48.88  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~l~Gl   56 (287)
T PRK13637         33 GEFVGLIGHTGSGKSTLIQHLNGL   56 (287)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999874

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.027  Score=51.39  Aligned_cols=56  Identities=27%  Similarity=0.400  Sum_probs=39.1

Q ss_pred             ceeccc---hhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc
Q 046918          162 EVRGRE---HLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV  225 (251)
Q Consensus       162 ~~~G~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v  225 (251)
                      ++-|.+   .+.++|+++|.++..  ..+.+      .+=++-|-++|+.|.|||.||+.|.....|
T Consensus       305 dVkG~DEAK~ELeEiVefLkdP~k--ftrLG------GKLPKGVLLvGPPGTGKTlLARAvAGEA~V  363 (752)
T KOG0734|consen  305 DVKGVDEAKQELEEIVEFLKDPTK--FTRLG------GKLPKGVLLVGPPGTGKTLLARAVAGEAGV  363 (752)
T ss_pred             cccChHHHHHHHHHHHHHhcCcHH--hhhcc------CcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence            455665   466888998887641  11111      233667889999999999999999987644

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.07  E-value=0.017  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -+++.++|++|+||||++..+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999998887655

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.06  E-value=0.025  Score=51.99  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .-.+|+|+|.+|+||||++.++..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999988765

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=95.06  E-value=0.068  Score=44.00  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      +.-+++.|+|..|+|||||+.++... ..+. =..++|++..+++
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~~   65 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENTS   65 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCCH
Confidence            44779999999999999999998442 1222 1356788876654

>PTZ00035 Rad51 protein; Provisional

Probab=95.06  E-value=0.08  Score=46.25  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccc---c-CCCceEEEEeCCCCCHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVS---A-HFDKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~-~Fd~~~wV~Vs~~~~~~~i~  247 (251)
                      ..-.++-|+|..|+|||||+..+.-.....   . .=..++||.--..|+..+|.
T Consensus       116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~  170 (337)
T PTZ00035        116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV  170 (337)
T ss_pred             CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH
Confidence            457899999999999999999887532211   0 11345688877777776653

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=95.05  E-value=0.03  Score=46.65  Aligned_cols=52  Identities=23%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             ceeccchhH---HHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc
Q 046918          162 EVRGREHLQ---IKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV  224 (251)
Q Consensus       162 ~~~G~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~  224 (251)
                      +++|.+..+   .-|++.|.+.+.           =+.-..+-|-.+|+.|.|||.+|+.+.|..+
T Consensus       122 dViGqEeAK~kcrli~~yLenPe~-----------Fg~WAPknVLFyGppGTGKTm~Akalane~k  176 (368)
T COG1223         122 DVIGQEEAKRKCRLIMEYLENPER-----------FGDWAPKNVLFYGPPGTGKTMMAKALANEAK  176 (368)
T ss_pred             hhhchHHHHHHHHHHHHHhhChHH-----------hcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence            688987665   345666655431           0124478889999999999999999999653

>PRK06526 transposase; Provisional

Probab=95.05  E-value=0.016  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-+-++|++|+|||+||..+.+.
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~  121 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIR  121 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHH
Confidence            345789999999999999998774

>cd01868 Rab11_like Rab11-like

Probab=95.04  E-value=0.022  Score=43.79  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      --|.|+|.+|+|||||.+.+.++.
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~   27 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNE   27 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            347799999999999999987653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=95.03  E-value=0.029  Score=48.78  Aligned_cols=49  Identities=27%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+...+++++.+.....           ..+..-+|+-++|+.|.|||||+..+.+
T Consensus        62 ~~~G~~~~i~~lV~~fk~AA~-----------g~~~~krIl~L~GPvg~GKSsl~~~Lk~  110 (358)
T PF08298_consen   62 EFYGMEETIERLVNYFKSAAQ-----------GLEERKRILLLLGPVGGGKSSLAELLKR  110 (358)
T ss_pred             cccCcHHHHHHHHHHHHHHHh-----------ccCccceEEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999876541           1135578999999999999999999887

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.02  E-value=0.021  Score=48.05  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        42 Ge~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         42 KQVTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            459999999999999999999864

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.02  E-value=0.02  Score=48.84  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        32 Ge~v~i~G~nGsGKSTLl~~l~Gl   55 (288)
T PRK13643         32 GSYTALIGHTGSGKSTLLQHLNGL   55 (288)
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            458999999999999999999975

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.02  E-value=0.02  Score=48.55  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGaGKSTLl~~i~G~   56 (279)
T PRK13635         33 GEWVAIVGHNGSGKSTLAKLLNGL   56 (279)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999875

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.02  E-value=0.03  Score=52.74  Aligned_cols=44  Identities=27%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-+..+.+.+..+.                -..-+-++|+.|+||||+|+.+.+
T Consensus        17 eivGQe~i~~~L~~~i~~~r----------------i~ha~Lf~Gp~GvGKttlA~~lAk   60 (620)
T PRK14954         17 DITAQEHITHTIQNSLRMDR----------------VGHGYIFSGLRGVGKTTAARVFAK   60 (620)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHH
Confidence            68898888888888876543                234588999999999999977654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=95.02  E-value=0.02  Score=50.71  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLL~~iaGl   52 (369)
T PRK11000         29 GEFVVFVGPSGCGKSTLLRMIAGL   52 (369)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999874

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=95.02  E-value=0.034  Score=47.73  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+...
T Consensus        28 Gei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522        28 GRIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.01  E-value=0.022  Score=45.20  Aligned_cols=27  Identities=33%  Similarity=0.560  Sum_probs=23.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCccc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVV  225 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v  225 (251)
                      -..+-++|++|.|||||.+.||..++-
T Consensus        28 Gef~fl~GpSGAGKSTllkLi~~~e~p   54 (223)
T COG2884          28 GEFVFLTGPSGAGKSTLLKLIYGEERP   54 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence            457889999999999999999997543

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.01  E-value=0.017  Score=50.15  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSE  239 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~  239 (251)
                      .-+-++|..|+|||+||..|.+..  ...--.+++++++.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~  221 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE  221 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH
Confidence            568999999999999999999953  22222456776644

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=95.00  E-value=0.021  Score=49.15  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        33 Gei~gllGpNGaGKSTLl~~l~Gl   56 (306)
T PRK13537         33 GECFGLLGPNGAGKTTTLRMLLGL   56 (306)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999884

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.00  E-value=0.027  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +-+-++|+.|+|||+||+.+.+.
T Consensus        89 ~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            44778999999999999999885

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd01866 Rab2 Rab2 subfamily

Probab=95.00  E-value=0.022  Score=44.06  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|.+|+|||||+..+.+.
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~   27 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDK   27 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999998875

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=94.99  E-value=0.024  Score=48.26  Aligned_cols=21  Identities=43%  Similarity=0.482  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 046918          201 IISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -+-++|+.|+||||+|+.+..
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~   80 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQ   80 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            477999999999999966655

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=94.99  E-value=0.021  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.|..-
T Consensus        47 Ge~~~lvG~sGsGKSTLlk~i~Gl   70 (331)
T PRK15079         47 GETLGVVGESGCGKSTFARAIIGL   70 (331)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            458999999999999999999874

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.99  E-value=0.021  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        32 Ge~~~i~G~nGaGKSTLl~~i~Gl   55 (283)
T PRK13636         32 GEVTAILGGNGAGKSTLFQNLNGI   55 (283)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999875

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.98  E-value=0.022  Score=45.78  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|.|||||++.+..-
T Consensus        31 G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          31 GELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            558999999999999999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.96  E-value=0.021  Score=48.61  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        65 Ge~~~I~G~nGsGKSTLl~~l~Gl   88 (285)
T PRK14254         65 NQVTAMIGPSGCGKSTFLRCINRM   88 (285)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999853

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.95  E-value=0.036  Score=53.55  Aligned_cols=53  Identities=19%  Similarity=0.234  Sum_probs=37.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+.+.+......      -.  .+.....++-++|+.|+|||+||+.+...
T Consensus       455 ~v~GQ~~ai~~l~~~i~~~~~g------~~--~~~~p~~~~lf~Gp~GvGKT~lA~~la~~  507 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKRSRAG------LG--NPNKPVGSFLFTGPTGVGKTELAKQLAEA  507 (731)
T ss_pred             ceeCcHHHHHHHHHHHHHHhcC------CC--CCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence            5889888888888777632100      00  00234667899999999999999999873

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=94.95  E-value=0.022  Score=41.74  Aligned_cols=21  Identities=57%  Similarity=0.865  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |.+.|.||+||||++..+...
T Consensus         2 i~~~GkgG~GKTt~a~~la~~   22 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARY   22 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998774

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK06921 hypothetical protein; Provisional

Probab=94.94  E-value=0.028  Score=47.42  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccC-CCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAH-FDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~-Fd~~~wV~Vs  238 (251)
                      ..-+-++|..|+|||+||..|.+.  +.+. --.+++++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~  155 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV  155 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH
Confidence            457889999999999999999995  3332 2345676653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.93  E-value=0.022  Score=47.41  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14249         30 RQITAIIGPSGCGKSTLLRALNRM   53 (251)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.93  E-value=0.036  Score=51.00  Aligned_cols=45  Identities=33%  Similarity=0.462  Sum_probs=35.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-+..+.+.+..+.                -..-+-++|+.|+||||+|+.+.+.
T Consensus        22 dliGq~~vv~~L~~ai~~~r----------------i~~a~Lf~Gp~G~GKTT~ArilAk~   66 (507)
T PRK06645         22 ELQGQEVLVKVLSYTILNDR----------------LAGGYLLTGIRGVGKTTSARIIAKA   66 (507)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHH
Confidence            57899888888887665433                2456789999999999999999774

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.92  E-value=0.022  Score=48.96  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        71 Ge~~~IvG~nGsGKSTLl~~L~Gl   94 (305)
T PRK14264         71 KSVTALIGPSGCGKSTFLRCLNRM   94 (305)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            459999999999999999999864

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=94.92  E-value=0.044  Score=49.52  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.++|..|+||||++.++...
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~  118 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARY  118 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999998764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.92  E-value=0.022  Score=48.59  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (290)
T PRK13634         33 GSYVAIIGHTGSGKSTLLQHLNGL   56 (290)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999874

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.91  E-value=0.035  Score=51.91  Aligned_cols=45  Identities=31%  Similarity=0.464  Sum_probs=36.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-.+.|.+++..+.                -...+-++|+.|+||||+|+.+.+.
T Consensus        14 eivGq~~i~~~L~~~i~~~r----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~   58 (584)
T PRK14952         14 EVVGQEHVTEPLSSALDAGR----------------INHAYLFSGPRGCGKTSSARILARS   58 (584)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68999998999999887543                2446789999999999999988763

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=94.90  E-value=0.023  Score=46.27  Aligned_cols=24  Identities=46%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        31 G~~~~I~G~nGsGKStLl~~l~G~   54 (220)
T TIGR02982        31 GEIVILTGPSGSGKTTLLTLIGGL   54 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999874

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=94.90  E-value=0.025  Score=45.28  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|.|..|.|||||.+.+..-
T Consensus        35 Ge~~~l~G~nGsGKStLl~~i~Gl   58 (194)
T cd03213          35 GELTAIMGPSGAGKSTLLNALAGR   58 (194)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999874

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.89  E-value=0.033  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+|.|.|+.|+||||+++.+.+
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~  144 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMID  144 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998776

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.88  E-value=0.025  Score=48.41  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+.++.|+.|.|||||.+.+..-
T Consensus        31 Gei~gllG~NGAGKTTllk~l~gl   54 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAGL   54 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999984

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.88  E-value=0.023  Score=49.38  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..+.++|+.|+|||||.+.|.-=
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999873

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=94.87  E-value=0.039  Score=42.55  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +-|.++|..|+|||||.+.+++..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~   25 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNY   25 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            358999999999999999998864

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=94.87  E-value=0.025  Score=46.50  Aligned_cols=24  Identities=42%  Similarity=0.483  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~g~   49 (232)
T cd03300          26 GEFFTLLGPSGCGKTTLLRLIAGF   49 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            459999999999999999999886

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.86  E-value=0.043  Score=50.89  Aligned_cols=44  Identities=39%  Similarity=0.530  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.+.+++..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        17 divGq~~v~~~L~~~i~~~~----------------~~ha~Lf~Gp~G~GKTt~A~~lAk   60 (527)
T PRK14969         17 ELVGQEHVVRALTNALEQQR----------------LHHAYLFTGTRGVGKTTLARILAK   60 (527)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCEEEEEECCCCCCHHHHHHHHHH
Confidence            68899998999988887544                134567899999999999998855

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=94.86  E-value=0.023  Score=46.01  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=18.7

Q ss_pred             CEEEEEEcCCCCcHHHHHH-HHhc
Q 046918          199 PIIISITGMGGIGKTTLAR-LIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~-~v~~  221 (251)
                      .--|+|+|.+|+|||||++ .++.
T Consensus         9 ~~kv~liG~~g~GKTtLi~~~~~~   32 (215)
T PTZ00132          9 EFKLILVGDGGVGKTTFVKRHLTG   32 (215)
T ss_pred             CceEEEECCCCCCHHHHHHHHHhC
Confidence            3458999999999999995 5554

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=94.85  E-value=0.037  Score=52.00  Aligned_cols=45  Identities=29%  Similarity=0.527  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+.+..+.                -..-+-++|+.|+||||+|+.+.+.
T Consensus        25 dliGq~~~v~~L~~~~~~gr----------------i~ha~L~~Gp~GvGKTt~Ar~lAk~   69 (598)
T PRK09111         25 DLIGQEAMVRTLTNAFETGR----------------IAQAFMLTGVRGVGKTTTARILARA   69 (598)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999887544                2446778999999999999998663

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=0.023  Score=48.75  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=29.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccc--cCCCceEEEEe
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVS--AHFDKKIWVCV  237 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~--~~Fd~~~wV~V  237 (251)
                      -++|-++|++|.|||+|.|..+..-.++  ..+.....+.+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi  217 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI  217 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence            5789999999999999999999976554  34544455544

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=94.84  E-value=0.084  Score=45.49  Aligned_cols=41  Identities=17%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             hHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          169 LQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       169 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      -.+.+.+.|.+.+              .....+|+|.|.=|+||||+.+.+.+..
T Consensus         4 ~a~~la~~I~~~~--------------~~~~~~IgL~G~WGsGKSs~l~~l~~~L   44 (325)
T PF07693_consen    4 YAKALAEIIKNPD--------------SDDPFVIGLYGEWGSGKSSFLNMLKEEL   44 (325)
T ss_pred             HHHHHHHHHhccC--------------CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456677676554              3568999999999999999999998853

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>cd04114 Rab30 Rab30 subfamily

Probab=94.83  E-value=0.03  Score=43.18  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...-|.++|.+|+|||||.+.+..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~   29 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQ   29 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Confidence            367899999999999999999864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN02840 tRNA dimethylallyltransferase

Probab=94.83  E-value=0.036  Score=49.54  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|.|+.|+||||||+.+...
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~   44 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKR   44 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44679999999999999999998875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.83  E-value=0.025  Score=47.50  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (261)
T PRK14263         34 NEITGFIGPSGCGKSTVLRSLNR   56 (261)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            46999999999999999999964

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.83  E-value=0.034  Score=53.68  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..++.|.+++...-.....-...    +-...+-|-++|+.|+||||||+.+.+.
T Consensus       179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~----gi~~~~giLL~GppGtGKT~laraia~~  235 (733)
T TIGR01243       179 DIGGLKEAKEKIREMVELPMKHPELFEHL----GIEPPKGVLLYGPPGTGKTLLAKAVANE  235 (733)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCceEEEECCCCCChHHHHHHHHHH
Confidence            57899988888877763211000000000    0122456779999999999999999884

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=94.83  E-value=0.035  Score=45.59  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|-++..+.+--+-.+++                 .+-+-|-||+|+||||-+....+
T Consensus        28 dIVGNe~tv~rl~via~~gn-----------------mP~liisGpPG~GKTTsi~~LAr   70 (333)
T KOG0991|consen   28 DIVGNEDTVERLSVIAKEGN-----------------MPNLIISGPPGTGKTTSILCLAR   70 (333)
T ss_pred             HhhCCHHHHHHHHHHHHcCC-----------------CCceEeeCCCCCchhhHHHHHHH
Confidence            68999988888876665544                 77788999999999996665443

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=94.82  E-value=0.025  Score=47.95  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.++.-
T Consensus        30 Ge~~~IvG~nGsGKSTLl~~L~gl   53 (275)
T cd03289          30 GQRVGLLGRTGSGKSTLLSAFLRL   53 (275)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhh
Confidence            458999999999999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09354 recA recombinase A; Provisional

Probab=94.82  E-value=0.072  Score=46.59  Aligned_cols=45  Identities=22%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      +.-+++=|+|+.|+|||||+-++...  ....=..++||..-..++.
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~  102 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP  102 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence            44679999999999999999987763  2333356678777666655

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.82  E-value=0.046  Score=46.05  Aligned_cols=23  Identities=39%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+|.|.|..|.||||+++.+.+
T Consensus        80 ~GlilisG~tGSGKTT~l~all~  102 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALS  102 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            46899999999999999997643

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=94.82  E-value=0.024  Score=49.80  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.|..-
T Consensus        28 Ge~~~llGpsGsGKSTLLr~IaGl   51 (353)
T PRK10851         28 GQMVALLGPSGSGKTTLLRIIAGL   51 (353)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999985

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=94.80  E-value=0.025  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.|..-
T Consensus        32 Ge~~~llGpsGsGKSTLLr~IaGl   55 (351)
T PRK11432         32 GTMVTLLGPSGCGKTTVLRLVAGL   55 (351)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            458999999999999999999874

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.80  E-value=0.026  Score=47.85  Aligned_cols=24  Identities=46%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        33 Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (277)
T PRK13642         33 GEWVSIIGQNGSGKSTTARLIDGL   56 (277)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999864

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=94.80  E-value=0.026  Score=49.40  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++++|+.|.|||||.+.+..-
T Consensus        67 Gei~gLlGpNGaGKSTLl~~L~Gl   90 (340)
T PRK13536         67 GECFGLLGPNGAGKSTIARMILGM   90 (340)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            469999999999999999999884

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.79  E-value=0.023  Score=52.68  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-..++|+|..|.|||||++.+..-
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~  384 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGL  384 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999763

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd04154 Arl2 Arl2 subfamily

Probab=94.79  E-value=0.026  Score=43.91  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..|.++|.+|+|||||+..+...
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccC
Confidence            34669999999999999988654

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=94.78  E-value=0.026  Score=47.94  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||.+.+..-
T Consensus        36 Ge~~~l~G~nGsGKSTLl~~l~Gl   59 (280)
T PRK13633         36 GEFLVILGRNGSGKSTIAKHMNAL   59 (280)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=94.77  E-value=0.024  Score=52.19  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        30 Ge~~~l~G~NGsGKSTLl~~l~G~   53 (501)
T PRK10762         30 GRVMALVGENGAGKSTMMKVLTGI   53 (501)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            569999999999999999999874

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=94.76  E-value=0.036  Score=50.90  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.++.-
T Consensus       274 Ge~~~l~G~nGsGKSTLl~~l~Gl  297 (491)
T PRK10982        274 GEILGIAGLVGAKRTDIVETLFGI  297 (491)
T ss_pred             CcEEEEecCCCCCHHHHHHHHcCC
Confidence            458999999999999999999874

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.74  E-value=0.027  Score=51.00  Aligned_cols=37  Identities=30%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccC-CC-ceEEEEe
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAH-FD-KKIWVCV  237 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~-Fd-~~~wV~V  237 (251)
                      ..-+-|+|..|+|||+|++.|.+.  +.+. .+ .+++++.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~  168 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS  168 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH
Confidence            345899999999999999999994  3333 33 3455554

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=94.73  E-value=0.025  Score=52.05  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        27 Ge~~~liG~nGsGKSTLl~~i~G~   50 (500)
T TIGR02633        27 GECVGLCGENGAGKSTLMKILSGV   50 (500)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            469999999999999999999874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=94.73  E-value=0.028  Score=45.99  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+-|+|.+|+||||+|+.+-+
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC
Confidence            45699999999999999999854

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd04116 Rab9 Rab9 subfamily

Probab=94.73  E-value=0.037  Score=42.75  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.++|.+|+|||||++.+.++
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~   28 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTN   28 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            566889999999999999988654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.73  E-value=0.025  Score=50.54  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        54 Gei~~LvG~NGsGKSTLLr~I~Gl   77 (400)
T PRK10070         54 GEIFVIMGLSGSGKSTMVRLLNRL   77 (400)
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            458999999999999999999874

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=94.73  E-value=0.027  Score=44.46  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.++|.+|+|||||+..+...
T Consensus        19 kv~lvG~~~vGKTsli~~~~~~   40 (182)
T PTZ00133         19 RILMVGLDAAGKTTILYKLKLG   40 (182)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Confidence            4778999999999999998654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=94.72  E-value=0.025  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        35 Ge~~~iiG~nGsGKSTLl~~i~G~   58 (529)
T PRK15134         35 GETLALVGESGSGKSVTALSILRL   58 (529)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999874

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.72  E-value=0.03  Score=46.10  Aligned_cols=24  Identities=38%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --.+||+|..|.|||||.|.+..-
T Consensus        53 Ge~vGiiG~NGaGKSTLlkliaGi   76 (249)
T COG1134          53 GERVGIIGHNGAGKSTLLKLIAGI   76 (249)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCc
Confidence            348999999999999999999873

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=94.71  E-value=0.027  Score=49.61  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||.+.|..-
T Consensus        30 Ge~~~llG~sGsGKSTLLr~iaGl   53 (356)
T PRK11650         30 GEFIVLVGPSGCGKSTLLRMVAGL   53 (356)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            358999999999999999999884

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=94.71  E-value=0.028  Score=46.33  Aligned_cols=24  Identities=29%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+...
T Consensus        25 Ge~~~i~G~nG~GKStLl~~l~G~   48 (235)
T cd03299          25 GDYFVILGPTGSGKSVLLETIAGF   48 (235)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999775

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.025  Score=52.48  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        27 Ge~~~liG~NGsGKSTLl~~l~Gl   50 (530)
T PRK15064         27 GNRYGLIGANGCGKSTFMKILGGD   50 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999974

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.71  E-value=0.023  Score=46.71  Aligned_cols=18  Identities=44%  Similarity=0.759  Sum_probs=16.7

Q ss_pred             CEEEEEEcCCCCcHHHHH
Q 046918          199 PIIISITGMGGIGKTTLA  216 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa  216 (251)
                      -.+++|+|..|+|||||+
T Consensus        21 Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          21 NKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             CcEEEEEcCCCCCHHHHH
Confidence            569999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=94.70  E-value=0.026  Score=52.28  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        26 Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        26 GEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhc
Confidence            468999999999999999999884

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.69  E-value=0.028  Score=47.93  Aligned_cols=23  Identities=48%  Similarity=0.585  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+.||+|.+|.|||||.+.|+.
T Consensus        32 GeI~GIIG~SGAGKSTLiR~iN~   54 (339)
T COG1135          32 GEIFGIIGYSGAGKSTLLRLINL   54 (339)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Confidence            56999999999999999999987

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=94.69  E-value=0.042  Score=51.94  Aligned_cols=45  Identities=42%  Similarity=0.581  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-+..|.+.+..+.                -...+-++|..|+||||+|+.+.+.
T Consensus        17 divGQe~vv~~L~~~l~~~r----------------l~hAyLf~Gp~GvGKTTlAr~lAk~   61 (647)
T PRK07994         17 EVVGQEHVLTALANALDLGR----------------LHHAYLFSGTRGVGKTTIARLLAKG   61 (647)
T ss_pred             HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            68999998888888886544                1345678999999999999998664

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.69  E-value=0.033  Score=49.17  Aligned_cols=26  Identities=35%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....++.++|+.|+||||++..+...
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~  229 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQ  229 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999999998764

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=94.69  E-value=0.04  Score=48.00  Aligned_cols=39  Identities=33%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 046918          164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      -+|..+..-.+++|++++                 +..+++.|.+|.|||-||-..
T Consensus       227 ~prn~eQ~~ALdlLld~d-----------------I~lV~L~G~AGtGKTlLALaA  265 (436)
T COG1875         227 RPRNAEQRVALDLLLDDD-----------------IDLVSLGGKAGTGKTLLALAA  265 (436)
T ss_pred             CcccHHHHHHHHHhcCCC-----------------CCeEEeeccCCccHhHHHHHH
Confidence            345667777789998877                 999999999999999988653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=94.68  E-value=0.026  Score=52.12  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        37 Ge~~~liG~NGsGKSTLl~~l~Gl   60 (510)
T PRK15439         37 GEVHALLGGNGAGKSTLMKIIAGI   60 (510)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=94.67  E-value=0.029  Score=46.93  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        47 Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (257)
T cd03288          47 GQKVGICGRTGSGKSSLSLAFFRM   70 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcc
Confidence            458999999999999999999874

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=94.67  E-value=0.025  Score=52.15  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.++.-
T Consensus       288 Ge~~~l~G~NGsGKSTLlk~i~Gl  311 (506)
T PRK13549        288 GEILGIAGLVGAGRTELVQCLFGA  311 (506)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=94.67  E-value=0.026  Score=51.81  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+...
T Consensus        29 Ge~~~liG~nGsGKSTLl~~l~G~   52 (490)
T PRK10938         29 GDSWAFVGANGSGKSALARALAGE   52 (490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=94.67  E-value=0.03  Score=44.24  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..|.|+|..|+|||||++.+..+
T Consensus        18 ~~i~ivG~~~~GKTsli~~l~~~   40 (184)
T smart00178       18 AKILFLGLDNAGKTTLLHMLKND   40 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999998875

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-22
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	2e-13

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 43/219 (19%)

Query: 51  DAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNT--AIRKLQMKRSSRDTNASQPVRTV 108
           DA+ R            D+         ++D   +   +   + ++   +    Q    +
Sbjct: 2   DAKARNCLLQHREALEKDI-----KTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAML 56

Query: 109 RPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYG---------------- 152
               +I               +    K++   + + +  +++                  
Sbjct: 57  IK--MILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVL 114

Query: 153 -TTSFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIG 211
                         R+ L   +   L                        ++I GM G G
Sbjct: 115 CEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGW---------------VTIHGMAGCG 159

Query: 212 KTTLARLIFND-NVVSAHFDKKI-WVCVSEPFDDIRIAK 248
           K+ LA     D +++   F   + WV V +      + K
Sbjct: 160 KSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 94.3 bits (234), Expect = 3e-22
 Identities = 25/211 (11%), Positives = 62/211 (29%), Gaps = 22/211 (10%)

Query: 46  KAVVEDAEKRQMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRD--TNASQ 103
              +  A  R + +   R  L  L+  +   ED  +  +    +L+   +        + 
Sbjct: 7   CRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQAS 66

Query: 104 PVRTVRPSFIIPSYWFSPGQLVRRHDIATKIKNVDKKV----DNIVRDINAYGTTSFLDE 159
            +  +   F   +       L    D A    ++ + V        + ++       + +
Sbjct: 67  ELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPK 126

Query: 160 SYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLI 219
                 RE+   +V   L    +                   + + G  G GK+ +A   
Sbjct: 127 QMTCYIREYHVDRVIKKLDEMCDLD--------------SFFLFLHGRAGSGKSVIASQA 172

Query: 220 FNDN--VVSAHFDKKIWVCVSEPFDDIRIAK 248
            + +  ++  ++D  +W+  S          
Sbjct: 173 LSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 4e-15
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 64/241 (26%)

Query: 39  HRRFHLIKAVVEDAEKRQMK---ENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQMK-- 93
           H   H+      D E  + +   ++ + V+ D     ++D +DV D   + + K ++   
Sbjct: 2   HHHHHM------DFETGEHQYQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHI 54

Query: 94  --------RSSR--DTNASQPVRTVRPSFII----PSYWFSPGQLVRRHDIATKIKNVDK 139
                    + R   T  S+    V+  F+      +Y F          + + IK   +
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKF----------LMSPIKTEQR 103

Query: 140 KVDNIVRDINAYGTTSFLDES----YEV-RGREHLQIKVANLLMSGSESSTVSTGGSSQV 194
           +   + R         + D      Y V R + +L+++ A  L+    +           
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAK---------- 151

Query: 195 PTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKI-WV---CVSEPFDDIRIAKAI 250
                  + I G+ G GKT +A  +     V    D KI W+     + P   + + + +
Sbjct: 152 ------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 251 L 251
           L
Sbjct: 206 L 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 38/251 (15%), Positives = 68/251 (27%), Gaps = 74/251 (29%)

Query: 1   MAEVIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFH-----LIKAVVEDAEKR 55
           M +  V  +L      L+     E R  S           R +       K  V     R
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SR 133

Query: 56  QMKENAVRVWLDDLKHASYDMEDVLDEWNTAIRKLQ-MKRSSRDTNASQPVRT--VRPSF 112
                 +R  L +L+ A      VL         +  +  S +   A     +  V+   
Sbjct: 134 LQPYLKLRQALLELRPAKN----VL---------IDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 113 IIPSYWFSPGQLVRRHDIATKIKNVDKKVDNIVRDINAYGTTSFLDESYEVRGREH-LQI 171
               +W +         +   ++ +  ++D           TS  D S  ++ R H +Q 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHSIQA 232

Query: 172 KVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK 231
           ++  LL             S      L +++                    NV     + 
Sbjct: 233 ELRRLLK------------SKPYENCL-LVL-------------------LNV----QNA 256

Query: 232 KIWVCVSEPFD 242
           K W      F+
Sbjct: 257 KAW----NAFN 263

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 21/128 (16%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 6   VSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKRQMKE--NAVR 63
           +S ++ +L  +L E    E +L  G ++ +E+L +    + A +    +   ++  +  +
Sbjct: 3   ISNLIPKLGELLTE----EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDK 58

Query: 64  VWLDDLKHASYDMEDVLDEWNTAIRKLQMKRSSRDTNASQPVRTVRPSFIIPSYWFSPGQ 123
           +W D+++  SY +EDV+D++        + +     +     +      ++        +
Sbjct: 59  LWADEVRELSYVIEDVVDKF--------LVQVDGIKSDDNNNKFKG---LMKRTTELLKK 107

Query: 124 LVRRHDIA 131
           +  +H IA
Sbjct: 108 VKHKHGIA 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.72
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.63
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.28
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.2
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.29
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.18
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.1
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.07
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.02
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.02
2fna_A	357	Conserved hypothetical protein; structural genomic	97.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.93
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.87
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.82
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.65
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.35
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.28
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.28
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.25
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.21
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.16
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.15
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.15
3bos_A	242	Putative DNA replication factor; P-loop containing	97.14
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.09
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.06
3co5_A	143	Putative two-component system transcriptional RES	96.98
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.98
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.97
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.93
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.92
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.91
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.89
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.88
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.88
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.86
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.86
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.84
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.81
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.81
3pvs_A	447	Replication-associated recombination protein A; ma	96.79
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.78
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.75
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.74
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.72
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.7
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.69
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.69
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.68
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.67
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.67
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.67
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.66
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.65
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.64
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.63
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.61
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.61
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.61
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.6
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.6
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.59
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.56
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.55
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.53
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.52
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.47
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.47
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.46
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.45
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.45
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.45
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.44
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.44
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.43
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.42
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.38
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.37
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.36
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.36
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.35
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.35
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.34
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.33
1g6h_A	257	High-affinity branched-chain amino acid transport	96.32
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.32
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.32
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.32
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.3
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.3
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.3
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.3
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.29
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.28
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.28
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.28
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.26
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.26
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.25
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.25
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.25
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.24
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.24
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.24
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.23
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.22
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.22
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.21
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.2
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.2
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.19
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.17
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.17
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.16
2og2_A	359	Putative signal recognition particle receptor; nuc	96.15
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.13
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.1
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.08
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.07
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.07
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.06
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.04
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.03
2qgz_A	308	Helicase loader, putative primosome component; str	96.02
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.01
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.99
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.98
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.98
2xxa_A	433	Signal recognition particle protein; protein trans	95.96
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.94
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.93
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.91
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.89
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.88
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.88
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.87
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.86
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.83
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.82
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.81
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.81
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.77
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.77
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.77
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.77
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.74
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.71
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.71
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.7
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.7
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.65
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.61
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.58
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.57
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.56
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.55
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.55
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.54
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.53
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.5
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.5
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.49
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.45
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.44
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.43
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.42
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.42
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.42
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.42
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.41
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.4
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.39
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.37
3end_A	307	Light-independent protochlorophyllide reductase ir	95.36
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.36
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.36
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.35
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.34
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.34
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.33
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.32
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.31
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.3
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.3
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.29
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.28
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.26
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.26
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.26
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.24
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.24
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.24
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.18
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.17
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.16
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.16
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.15
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.15
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.15
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.12
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.11
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.11
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.1
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.1
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.1
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.09
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.08
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.05
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.03
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.03
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.02
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.01
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.01
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.99
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.99
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.99
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.98
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.94
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.88
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.86
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.85
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.84
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.83
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.82
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.81
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.8
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.79
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.77
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.77
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.75
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.74
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.74
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.73
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.73
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.73
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.72
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.71
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.7
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.69
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.69
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.68
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.66
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.65
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.65
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.62
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.61
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.6
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.6
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.57
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.56
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.55
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.55
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.54
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.54
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.53
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.52
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.48
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.39
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.39
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.38
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.34
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.34
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.33
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.28
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.28
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.28
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.25
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.25
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.24
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.23
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.22
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.2
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.2
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.17
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.14
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.12
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.1
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.09
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.0
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.99
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.92
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	93.88
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	93.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.82
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.81
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.79
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	93.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	93.77
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	93.77
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.68
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	93.67
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.63
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.61
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.61
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	93.6
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	93.53
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.49
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.41
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.4
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	93.4
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.39
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.38
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.36
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.34
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.34
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.32
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.3
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.26
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.25
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.24
3ice_A	422	Transcription termination factor RHO; transcriptio	93.08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.05
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	93.05
3io5_A	333	Recombination and repair protein; storage dimer, i	93.05
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	93.01
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	92.99
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	92.92
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	92.89
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.01
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	92.79
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.79
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	92.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	92.74
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	92.68
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	92.66
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	92.66
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	92.56
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	92.39
1e69_A	322	Chromosome segregation SMC protein; structural mai	92.29
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	92.25
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	92.14
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	92.14
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	92.06
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	92.04
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	91.97
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	91.91
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	91.87
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.75
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.7
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.69
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	91.67
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	91.55
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	91.55
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	91.34
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	91.32
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	91.31
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	91.31
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.3
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	91.27
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	91.17
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	91.13
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	91.13
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	91.1
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	91.09
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	91.09
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	91.04
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	90.99
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	90.77
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.7
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	90.67
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	90.63
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	90.61
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	90.57
3l0o_A	427	Transcription termination factor RHO; helicase, RH	90.55
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	90.52
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	90.5
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	90.44
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	90.28
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	90.24
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	90.13
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	90.06
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	90.0
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	89.97
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	89.91
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	89.79
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	89.66
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	89.64
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	89.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.59
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	89.52
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	89.51
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	89.39
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	89.33
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	89.31
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	89.21
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	89.09
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	88.96
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	88.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	88.79
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	88.79
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	88.7
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	88.69
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	88.65
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	88.51
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	88.38
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	88.28
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	88.28
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	88.24
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	88.18
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	88.14
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	88.13
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	88.12
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	88.12
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	87.99
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	87.89
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	87.86
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	87.76
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	87.48
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	87.45
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	87.17
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	87.03
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	86.91
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	86.89
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	86.66
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	86.6
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	86.4
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	86.39
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	86.39
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	86.14
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	86.12
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	86.08

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.72  E-value=9.2e-18  Score=122.33  Aligned_cols=80  Identities=20%  Similarity=0.480  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhhchhhHHH
Q 046918            4 VIVSTILEQLASILVEQTAAEVRLISGAEEEVENLHRRFHLIKAVVEDAEKR--QMKENAVRVWLDDLKHASYDMEDVLD   81 (251)
Q Consensus         4 ~~vs~~~~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~l~~~a~d~eD~ld   81 (251)
                      |+++++++||.++    +.+|+.++.+++++++.|+++|..|+++|.+++.+  +..++.++.|+++||+++||+||+||
T Consensus         1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD   76 (115)
T 3qfl_A            1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD   76 (115)
T ss_dssp             CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888887    67899999999999999999999999999999987  55789999999999999999999999


Q ss_pred             hhhHHH
Q 046918           82 EWNTAI   87 (251)
Q Consensus        82 ~~~~~~   87 (251)
                      +|.++.
T Consensus        77 ~f~~~~   82 (115)
T 3qfl_A           77 KFLVQV   82 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999765

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.63  E-value=2.6e-16  Score=144.27  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc--CcccccCCCceEEEEeCCCC
Q 046918          164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN--DNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~--d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      +||+.++++|.++|....              ...++||+|+||||+||||||+.+|+  |.+++.+|+.++||+||+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~--------------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~  196 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC--------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA  196 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT--------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred             CCchHHHHHHHHHHhccc--------------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCC
Confidence            699999999999997653              24589999999999999999999998  78899999999999999985


Q ss_pred             --CHHHHHHHhC
Q 046918          242 --DDIRIAKAIL  251 (251)
Q Consensus       242 --~~~~i~~~Il  251 (251)
                        ++.+++++|+
T Consensus       197 ~~~~~~~~~~il  208 (549)
T 2a5y_B          197 PKSTFDLFTDIL  208 (549)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence              8888888764

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.35  E-value=3.4e-13  Score=129.22  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCc-eEEEEeCCCC
Q 046918          163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK-KIWVCVSEPF  241 (251)
Q Consensus       163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~-~~wV~Vs~~~  241 (251)
                      .+||+.+.++|.++|...+                ..++|+|+||||+||||||+.+|++.+++.+|+. ++||+|++.+
T Consensus       130 ~VGRe~eLeeL~elL~~~d----------------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~  193 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELR----------------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN  193 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCC----------------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred             CCCcHHHHHHHHHHHhccC----------------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence            5999999999999998533                2789999999999999999999998889999997 8999999999


Q ss_pred             CHHHHHHHh
Q 046918          242 DDIRIAKAI  250 (251)
Q Consensus       242 ~~~~i~~~I  250 (251)
                      +...++..|
T Consensus       194 d~~~IL~~L  202 (1221)
T 1vt4_I          194 SPETVLEML  202 (1221)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            988876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.28  E-value=6.1e-12  Score=124.43  Aligned_cols=66  Identities=24%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV-SAHF-DKKIWVCVSE  239 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-~~~F-d~~~wV~Vs~  239 (251)
                      .++||+.++++|.++|...+               ...++|+|+||||+||||||+++|++.++ ..+| +.+.||++++
T Consensus       125 ~~vgR~~~~~~l~~~l~~~~---------------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~  189 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKLN---------------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK  189 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTTT---------------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred             eeccHHHHHHHHHHHHhhcc---------------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence            69999999999999997654               45899999999999999999999998654 4556 5667999999


Q ss_pred             CCC
Q 046918          240 PFD  242 (251)
Q Consensus       240 ~~~  242 (251)
                      .++
T Consensus       190 ~~~  192 (1249)
T 3sfz_A          190 QDK  192 (1249)
T ss_dssp             CCH
T ss_pred             cCc
Confidence            654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.20  E-value=3.1e-11  Score=111.16  Aligned_cols=64  Identities=27%  Similarity=0.356  Sum_probs=56.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccc-ccCC-CceEEEEeCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVV-SAHF-DKKIWVCVSE  239 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v-~~~F-d~~~wV~Vs~  239 (251)
                      .++||+.+.++|.++|....               ...++|+|+||||+||||||+.+|++..+ ..+| +.++|+++++
T Consensus       125 ~~vGR~~~l~~L~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~  189 (591)
T 1z6t_A          125 VFVTRKKLVNAIQQKLSKLK---------------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK  189 (591)
T ss_dssp             SCCCCHHHHHHHHHHHTTST---------------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred             eecccHHHHHHHHHHHhccc---------------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence            69999999999999997543               34789999999999999999999998766 7889 5899999987


Q ss_pred             C
Q 046918          240 P  240 (251)
Q Consensus       240 ~  240 (251)
                      .
T Consensus       190 ~  190 (591)
T 1z6t_A          190 Q  190 (591)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.29  E-value=5.2e-07  Score=78.88  Aligned_cols=80  Identities=24%  Similarity=0.222  Sum_probs=51.7

Q ss_pred             ceeccchhHHHHHHHh-cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc---cCCC-ceEEEE
Q 046918          162 EVRGREHLQIKVANLL-MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS---AHFD-KKIWVC  236 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~---~~Fd-~~~wV~  236 (251)
                      .++||+.+.+.+.++| .....       +  .......-+|+|+|++|+|||||++.+++.....   ..|+ ..+|+.
T Consensus        23 ~l~gR~~el~~l~~~l~~~~~~-------~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           23 ELRVRRGEAEALARIYLNRLLS-------G--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHT-------S--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHhHHHhc-------C--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            6999999999999988 42110       0  0001223344449999999999999999853221   1233 246777


Q ss_pred             eCCCCCHHHHHHHh
Q 046918          237 VSEPFDDIRIAKAI  250 (251)
Q Consensus       237 Vs~~~~~~~i~~~I  250 (251)
                      .+...+...+++.|
T Consensus        94 ~~~~~~~~~~~~~l  107 (412)
T 1w5s_A           94 AFNAPNLYTILSLI  107 (412)
T ss_dssp             GGGCCSHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH
Confidence            66777777776654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.18  E-value=1.2e-06  Score=75.59  Aligned_cols=73  Identities=23%  Similarity=0.354  Sum_probs=51.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCC---ceEEEEeC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFD---KKIWVCVS  238 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd---~~~wV~Vs  238 (251)
                      .++||+.+.+.+.+++...-.             ......+.|+|++|+|||||++.+++.  ....|+   ..+|+..+
T Consensus        21 ~~~gr~~e~~~l~~~l~~~~~-------------~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           21 ELPHREDQIRKIASILAPLYR-------------EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCTTCHHHHHHHHHSSGGGGG-------------TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHH
T ss_pred             CCCChHHHHHHHHHHHHHHHc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECC
Confidence            699999999999998864210             123568899999999999999999984  333331   34677655


Q ss_pred             CCCCHHHHHHH
Q 046918          239 EPFDDIRIAKA  249 (251)
Q Consensus       239 ~~~~~~~i~~~  249 (251)
                      ...+...++..
T Consensus        86 ~~~~~~~~~~~   96 (386)
T 2qby_A           86 QIDTPYRVLAD   96 (386)
T ss_dssp             HHCSHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            54454444443

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.10  E-value=2.1e-06  Score=73.06  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=45.0

Q ss_pred             cccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEE
Q 046918          155 SFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW  234 (251)
Q Consensus       155 ~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~w  234 (251)
                      +..... .++||+.+.+.+.+++..                 .  +++.|+|+.|+|||||++.+.+..      + .+|
T Consensus         7 ~~~~~~-~~~gR~~el~~L~~~l~~-----------------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~   59 (350)
T 2qen_A            7 PKTRRE-DIFDREEESRKLEESLEN-----------------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GIL   59 (350)
T ss_dssp             CCCSGG-GSCSCHHHHHHHHHHHHH-----------------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEE
T ss_pred             CCCChH-hcCChHHHHHHHHHHHhc-----------------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEE
Confidence            334445 799999999999998853                 1  589999999999999999998742      2 567


Q ss_pred             EEeCC
Q 046918          235 VCVSE  239 (251)
Q Consensus       235 V~Vs~  239 (251)
                      +....
T Consensus        60 ~~~~~   64 (350)
T 2qen_A           60 IDCRE   64 (350)
T ss_dssp             EEHHH
T ss_pred             EEeec
Confidence            76543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.07  E-value=8.2e-06  Score=70.56  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=53.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC-CceEEEEeCCC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHF-DKKIWVCVSEP  240 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F-d~~~wV~Vs~~  240 (251)
                      .++||+.+.+.+.++|...-.+       .    ....+.+.|+|+.|+|||||++.+.+.  ..... -..+|+..+..
T Consensus        18 ~l~gr~~~~~~l~~~l~~~~~~-------~----~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~   84 (389)
T 1fnn_A           18 RLPHREQQLQQLDILLGNWLRN-------P----GHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIY   84 (389)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHS-------T----TSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTC
T ss_pred             CCCChHHHHHHHHHHHHHHHcC-------C----CCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccC
Confidence            6999999999999988652100       0    123458999999999999999999984  32221 23567777777


Q ss_pred             CCHHHHHHHh
Q 046918          241 FDDIRIAKAI  250 (251)
Q Consensus       241 ~~~~~i~~~I  250 (251)
                      .+...++..+
T Consensus        85 ~~~~~~~~~l   94 (389)
T 1fnn_A           85 RNFTAIIGEI   94 (389)
T ss_dssp             CSHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            7666665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.02  E-value=2.8e-06  Score=73.56  Aligned_cols=75  Identities=20%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccc----cCC--CceEEE
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVS----AHF--DKKIWV  235 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~----~~F--d~~~wV  235 (251)
                      .++||+.+.+++.++|...-.             ....+.+-|+|++|+||||||+.+++...-.    ..+  -..+|+
T Consensus        21 ~l~gr~~~~~~l~~~l~~~~~-------------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i   87 (384)
T 2qby_B           21 EIPFREDILRDAAIAIRYFVK-------------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV   87 (384)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHT-------------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence            699999999999887754210             1235689999999999999999999842111    112  245677


Q ss_pred             EeCCCC-CHHHHHHH
Q 046918          236 CVSEPF-DDIRIAKA  249 (251)
Q Consensus       236 ~Vs~~~-~~~~i~~~  249 (251)
                      ..+... +...++..
T Consensus        88 ~~~~~~~~~~~~~~~  102 (384)
T 2qby_B           88 NCREVGGTPQAVLSS  102 (384)
T ss_dssp             EHHHHCSCHHHHHHH
T ss_pred             ECccCCCCHHHHHHH
Confidence            765554 55444443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.02  E-value=5e-06  Score=71.73  Aligned_cols=75  Identities=27%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCccccc---CCC-ceEEEEe
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSA---HFD-KKIWVCV  237 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~---~Fd-~~~wV~V  237 (251)
                      .++||+.+.+.+..+|...-.             ......+.|+|++|+||||||+.+++...-..   ..+ ..+|+..
T Consensus        20 ~~~gr~~~~~~l~~~l~~~~~-------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (387)
T 2v1u_A           20 VLPHREAELRRLAEVLAPALR-------------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA   86 (387)
T ss_dssp             CCTTCHHHHHHHHHTTGGGTS-------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            699999999999998854310             12356788999999999999999998421110   012 3467777


Q ss_pred             CCCCCHHHHHHH
Q 046918          238 SEPFDDIRIAKA  249 (251)
Q Consensus       238 s~~~~~~~i~~~  249 (251)
                      +...+...++..
T Consensus        87 ~~~~~~~~~~~~   98 (387)
T 2v1u_A           87 RHRETPYRVASA   98 (387)
T ss_dssp             TTSCSHHHHHHH
T ss_pred             CcCCCHHHHHHH
Confidence            766666555544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.93  E-value=1.6e-05  Score=67.78  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             cccCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEE
Q 046918          155 SFLDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIW  234 (251)
Q Consensus       155 ~~~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~w  234 (251)
                      +..... .++||+.+.+.+.+ +.                  .  +++.|+|+.|+|||||++.+.+..  ..   ..+|
T Consensus         8 ~~~~~~-~~~gR~~el~~L~~-l~------------------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~   60 (357)
T 2fna_A            8 PKDNRK-DFFDREKEIEKLKG-LR------------------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIY   60 (357)
T ss_dssp             CCCSGG-GSCCCHHHHHHHHH-TC------------------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEE
T ss_pred             CCCCHH-HhcChHHHHHHHHH-hc------------------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEE
Confidence            333445 79999999999988 52                  2  489999999999999999999852  22   2578


Q ss_pred             EEeCC
Q 046918          235 VCVSE  239 (251)
Q Consensus       235 V~Vs~  239 (251)
                      +....
T Consensus        61 ~~~~~   65 (357)
T 2fna_A           61 LDLRK   65 (357)
T ss_dssp             EEGGG
T ss_pred             EEchh
Confidence            87664

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.93  E-value=9.3e-06  Score=62.61  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++...+.+.+.+....                 ...+-|+|+.|+||||||+.+.+.
T Consensus        23 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           23 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999986533                 445679999999999999999884

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.87  E-value=2.8e-05  Score=61.35  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++...+.+.+++....                 ...+-|+|+.|+||||||+.+.+.
T Consensus        18 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           18 EVVGQDEVIQRLKGYVERKN-----------------IPHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHhCCC-----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999987544                 233889999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.82  E-value=1.4e-05  Score=61.50  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++.+.+.+.+.+....                 ...+-|+|+.|+||||||+.+.+.
T Consensus        23 ~~~g~~~~~~~l~~~l~~~~-----------------~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           23 PVIGRDTEIRRAIQILSRRT-----------------KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHhCCC-----------------CCceEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999986533                 345679999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.65  E-value=4.2e-05  Score=61.01  Aligned_cols=45  Identities=36%  Similarity=0.547  Sum_probs=38.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+..++....                ...++.|+|++|+||||||+.+++.
T Consensus        24 ~~~g~~~~~~~l~~~l~~~~----------------~~~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           24 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             GCCSCHHHHHHHHHHHHHTC----------------CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999886543                1347889999999999999999874

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.49  E-value=9.6e-05  Score=62.07  Aligned_cols=44  Identities=25%  Similarity=0.408  Sum_probs=37.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+.+++....                 .+.+-++|+.|+||||+|+.+.+.
T Consensus        22 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           22 DIVGNKETIDRLQQIAKDGN-----------------MPHMIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             GCCSCTHHHHHHHHHHHSCC-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH
Confidence            68999999999999987644                 233889999999999999999884

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.35  E-value=0.00024  Score=55.91  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ++...+.+.+.+....              .....+|+|.|..|+|||||++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~--------------~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIK--------------TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSC--------------CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--------------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445677777776543              24468999999999999999999876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.28  E-value=0.00015  Score=55.91  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..+.|+|+.|+|||||++.+++.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999884

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.28  E-value=0.0002  Score=60.27  Aligned_cols=44  Identities=27%  Similarity=0.457  Sum_probs=37.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+.+++..+.                 ...+-++|+.|+||||+|+.+++.
T Consensus        26 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           26 DIVGQEHIVKRLKHYVKTGS-----------------MPHLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC-----------------CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HhhCCHHHHHHHHHHHHcCC-----------------CCeEEEECcCCCCHHHHHHHHHHH
Confidence            68999999999999887544                 334889999999999999999884

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.25  E-value=0.00017  Score=53.70  Aligned_cols=46  Identities=24%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|......++.+.+..-.              ..... |-|+|..|+|||+||+.+++.
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a--------------~~~~~-vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS--------------ETDIA-VWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT--------------TCCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred             CceeCCHHHHHHHHHHHHHh--------------CCCCC-EEEECCCCCCHHHHHHHHHHh
Confidence            57899888888888775322              11133 569999999999999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.21  E-value=0.00032  Score=55.03  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ..+-|+|+.|+||||||+.+++.  .......+++++.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH
Confidence            67889999999999999999984  33333455666543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.16  E-value=0.00034  Score=57.91  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+.+...-.....-.   . -+.....-+-|+|+.|+||||||+.+.+.
T Consensus        18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           18 DIGGLEKQMQEIREVVELPLKHPELFE---K-VGIEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHH---H-HCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHH---h-cCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            689999999988887643100000000   0 00012445889999999999999999884

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.15  E-value=0.00032  Score=59.73  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+..++....                 ...+-++|+.|+||||||+.+.+.
T Consensus        38 ~i~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           38 EVTAQDHAVTVLKKTLKSAN-----------------LPHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             TCCSCCTTHHHHHHHTTCTT-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhhCCHHHHHHHHHHHhcCC-----------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999886544                 223789999999999999999885

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.15  E-value=0.00044  Score=54.69  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.+|+|+|..|+|||||++.+..-
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999998763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.14  E-value=0.00053  Score=54.75  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=27.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ...+-|+|+.|+||||||+.+.+.  .........|+..+
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~   89 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG   89 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence            467889999999999999999884  22222344566554

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.12  E-value=0.00036  Score=62.39  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++.+++.++..|....                 ..-+-++|..|+||||||+.+.+.
T Consensus       181 ~iiGr~~~i~~l~~~l~r~~-----------------~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999997643                 223468999999999999998873

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.09  E-value=0.00056  Score=57.20  Aligned_cols=58  Identities=21%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCc-cCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTV-STGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+.+++....-+... ..+-..   ......+-|+|+.|+|||+||+.+.+.
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAH---ETPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCS---SCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCC---CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4889988888877655311000000 000000   123556889999999999999987774

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00027  Score=59.88  Aligned_cols=49  Identities=8%  Similarity=0.023  Sum_probs=39.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .+.||+.+.++|...|...-.             ......+-|+|+.|+|||++++.|.+..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~-------------~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLM-------------SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------------TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999887764320             1336778899999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.98  E-value=0.0002  Score=53.22  Aligned_cols=46  Identities=15%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|......++.+.+..-.              ..... |-|+|..|+|||+||+.+++.
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~--------------~~~~~-vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAA--------------KRTSP-VFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHH--------------TCSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred             CceeCCHHHHHHHHHHHHHh--------------CCCCc-EEEECCCCccHHHHHHHHHHh
Confidence            57899888888877765322              01122 568999999999999999985

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.98  E-value=0.00064  Score=56.59  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+.+......... ..+ -   ......+-|+|+.|+||||||+.+.+.
T Consensus        22 ~i~G~~~~~~~l~~~i~~~~~~~~~-~~~-~---~~~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           22 DIAGQDVAKQALQEMVILPSVRPEL-FTG-L---RAPAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             GSCCCHHHHHHHHHHTHHHHHCGGG-SCG-G---GCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHhhhhCHHH-Hhc-C---CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            6899998888888776321000000 000 0   012457889999999999999999884

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.97  E-value=0.00054  Score=53.05  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      -.+|+|+|+.|+|||||++.+...+
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcc
Confidence            5789999999999999999997653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.93  E-value=0.00051  Score=57.48  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+.+++..+.                 ...+-++|+.|+||||+|+.+.+.
T Consensus        18 ~~~g~~~~~~~l~~~l~~~~-----------------~~~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           18 EVVGQDEVIQRLKGYVERKN-----------------IPHLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             GSCSCHHHHHHHHTTTTTTC-----------------CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHhCCC-----------------CCeEEEECcCCcCHHHHHHHHHHH
Confidence            68999998888888775533                 233889999999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.92  E-value=0.00065  Score=56.96  Aligned_cols=57  Identities=23%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+++...-.....-.+    -+-.....+-++|+.|+||||||+.+.+.
T Consensus        16 di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           16 DIGGLEDVKRELQELVQYPVEHPDKFLK----FGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHH----HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHhhCHHHHHH----cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            5888888887777765421000000000    00122557889999999999999999984

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.92  E-value=0.00074  Score=61.07  Aligned_cols=58  Identities=29%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCC---CCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSES---STVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+.++|......   .... .+.  .+....+.+-|+|+.|+||||||+.+.+.
T Consensus        40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~-~g~--~~~~~~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           40 QVCGNKGSVMKLKNWLANWENSKKNSFKH-AGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             GCCSCHHHHHHHHHHHHTHHHHHHTTTCC-CCT--TSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhHhhchhhccc-cCc--cCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999998752100   0000 000  00123568899999999999999999884

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.91  E-value=0.00052  Score=58.27  Aligned_cols=49  Identities=24%  Similarity=0.369  Sum_probs=37.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+..++......            ......+-|+|+.|+||||||+.+.+.
T Consensus        30 ~iiG~~~~~~~l~~~l~~~~~~------------~~~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           30 GYIGQESIKKNLNVFIAAAKKR------------NECLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHT------------TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHHHHhc------------CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999888888643100            122455789999999999999999873

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.89  E-value=0.0011  Score=56.84  Aligned_cols=46  Identities=22%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             ceeccchhHHH---HHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIK---VANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.   +.+.+....               .....+-|+|+.|+|||+||+.+.+.
T Consensus        45 ~ivG~~~~~~~l~~l~~~~~~~~---------------~~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           45 GMVGQLAARRAAGVVLEMIREGK---------------IAGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTC---------------CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHcCC---------------CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            68999988766   455554433               22467889999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.88  E-value=0.0014  Score=53.17  Aligned_cols=53  Identities=25%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             ceeccchhHHHHHHHhc---CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLM---SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+++.   ..+.   -...+     .....-+-++|+.|+||||||+.+.+.
T Consensus         7 ~i~G~~~~~~~l~~~~~~~~~~~~---~~~~g-----~~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A            7 DVAGMHEAKLEVREFVDYLKSPER---FLQLG-----AKVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHCCC--------------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHCHHH---HHHcC-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            68899888777755442   2210   00000     122345779999999999999999884

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.88  E-value=0.00063  Score=52.11  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.++.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            57999999999999999996553

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.86  E-value=0.00092  Score=57.27  Aligned_cols=45  Identities=36%  Similarity=0.547  Sum_probs=37.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..++.+.+.+....                ....+-|+|+.|+||||||+.+.+.
T Consensus        17 ~~vg~~~~~~~L~~~l~~~~----------------~~~~~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           17 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             TSCSCHHHHHHHHHHHHHTC----------------CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999886543                1346789999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.86  E-value=0.0012  Score=55.13  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|+|..|+|||||++.+..-
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998774

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.84  E-value=0.00055  Score=58.41  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             ceeccchhHHHHHHHh-cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLL-MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+...+.+.+++ ....                 ...+.|+|+.|+|||||++.+.+
T Consensus        15 ~~vg~~~~~~~l~~~~~~~~~-----------------~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           15 ALSHNEELTNFLKSLSDQPRD-----------------LPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             GCCSCHHHHHHHHTTTTCTTC-----------------CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             HhcCCHHHHHHHHHHHhhCCC-----------------CCeEEEECCCCCCHHHHHHHHHH
Confidence            5789888888887776 3322                 22289999999999999998776

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.82  E-value=0.00065  Score=57.15  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=36.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|++..+..+..++......            ......+-|+|+.|+||||||+.+++.
T Consensus        13 ~~ig~~~~~~~l~~~l~~~~~~------------~~~~~~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           13 EYIGQERLKQKLRVYLEAAKAR------------KEPLEHLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHH------------CSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHHcc------------CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            6899998888888777531100            012356779999999999999999883

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.82  E-value=0.0012  Score=55.74  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.|.+.+...-.....-..+     ....+-+-++|+.|+|||+||+.+.+.
T Consensus        19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~-----~~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           19 DVAGLEGAKEALKEAVILPVKFPHLFKGN-----RKPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCGGGCCTT-----CCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             HhcChHHHHHHHHHHHHHHHhCHHHHhcC-----CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            68999998888887762110000000000     122456889999999999999999884

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.81  E-value=0.001  Score=57.13  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCC---CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSG---SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+.+...   .+- .  ..     ......-+-|+|+.|+||||||+.+.+.
T Consensus        85 ~i~G~~~~~~~l~~~i~~~~~~~~~-~--~~-----~~~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A           85 DIAGVEFAKATIKEIVVWPMLRPDI-F--TG-----LRGPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTT-S--CG-----GGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHHHhhChHh-H--hh-----ccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            6899999998888776421   100 0  00     0122557889999999999999999873

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.81  E-value=0.00071  Score=57.62  Aligned_cols=49  Identities=29%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+-..+......            ...+..+.++|+.|+||||||+.+.+.
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~~------------~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKMR------------GEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHH------------TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4677766666655544322000            122567899999999999999999884

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.79  E-value=0.00074  Score=59.96  Aligned_cols=44  Identities=30%  Similarity=0.366  Sum_probs=35.5

Q ss_pred             ceeccchhH---HHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQ---IKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..+   ..+...+....                 +..+-++|+.|+||||||+.|.+.
T Consensus        27 ~ivGq~~~~~~~~~L~~~i~~~~-----------------~~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           27 QYIGQQHLLAAGKPLPRAIEAGH-----------------LHSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             TCCSCHHHHSTTSHHHHHHHHTC-----------------CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhCCcHHHHhchHHHHHHHHcCC-----------------CcEEEEECCCCCcHHHHHHHHHHH
Confidence            578888777   56666665544                 567889999999999999999984

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.78  E-value=0.00096  Score=52.32  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+|.|+|+.|+|||||++.+...
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999998773

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.75  E-value=0.00091  Score=54.52  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|.|+.|+||||+|+.+..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999866

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.75  E-value=0.00083  Score=52.65  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|.|+|+.|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.74  E-value=0.0029  Score=49.85  Aligned_cols=44  Identities=25%  Similarity=0.147  Sum_probs=32.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~  247 (251)
                      -.++.|+|.+|+|||||+..+.. .    .=..++|+.....++..++.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~   63 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV   63 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence            56999999999999999999987 1    12356777776655655543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.72  E-value=0.0013  Score=50.19  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .-.+|.|+|+.|+|||||++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            357999999999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.70  E-value=0.00094  Score=64.07  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++.+...+++.|....                 ..-+-++|..|+||||||+.+.+.
T Consensus       171 ~viGr~~~i~~l~~~l~~~~-----------------~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          171 PVIGRDEEIRRVIQILLRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCSCHHHHHHHHHHHHCSS-----------------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999997644                 223578999999999999999874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.69  E-value=0.0016  Score=53.54  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=33.6

Q ss_pred             ceeccchhHHHHHH-------HhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVAN-------LLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~-------~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.....++++.       .+....              .....-+-|+|+.|+|||+||+.+.+.
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~--------------~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSD--------------RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCS--------------SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccC--------------CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            57777776666655       333221              133667889999999999999999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.0014  Score=55.81  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-.+.+...+..+.                 +.-+.++|+.|+||||||+.+.+.
T Consensus        26 ~~~g~~~~~~~L~~~i~~g~-----------------~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           26 EVYGQNEVITTVRKFVDEGK-----------------LPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHhcCC-----------------CceEEEECCCCCCHHHHHHHHHHH
Confidence            57788877788877776544                 333889999999999999998763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.69  E-value=0.0012  Score=62.38  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++.+++.++..|....                 ..-+-++|..|+||||+|+.+.+.
T Consensus       181 ~iiG~~~~i~~l~~~l~~~~-----------------~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          181 PVIGRSKEIQRVIEVLSRRT-----------------KNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             CCCCCHHHHHHHHHHHHCSS-----------------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CccCchHHHHHHHHHHhCCC-----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999997644                 223569999999999999998874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.68  E-value=0.0016  Score=55.16  Aligned_cols=56  Identities=21%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.|.+.+...-.....-.++     ....+-|-++|+.|+|||+||+.+.+.
T Consensus        13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~-----~~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           13 DVAGLEGAKEALKEAVILPIKFPHLFTGK-----RTPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCGGGSCTT-----CCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHhCHHHHhCC-----CCCCceEEEECCCCccHHHHHHHHHHH
Confidence            68899888888876653110000000000     123467889999999999999999984

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.67  E-value=0.0012  Score=53.75  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -+.|+|+.|+||||||+.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4779999999999999999884

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.67  E-value=0.00097  Score=54.59  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=32.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|......++.+.+..-.              .. ..-+-|+|..|+|||+||+.+++.
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~--------------~~-~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLA--------------PL-DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHT--------------TS-CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             cceeCCHHHHHHHHHHHHHh--------------CC-CCCEEEECCCCCcHHHHHHHHHHh
Confidence            57899888888877665422              01 234568999999999999999985

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.67  E-value=0.0013  Score=51.72  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|+|+|+.|+|||||++.+...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            33679999999999999999999874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.67  E-value=0.0011  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|+|+|+.|+|||||++.+..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999999976

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.66  E-value=0.0016  Score=61.51  Aligned_cols=44  Identities=23%  Similarity=0.235  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|++.+...+++.|....                 ..-+-++|..|+||||||+.+.+.
T Consensus       187 ~~iGr~~~i~~l~~~l~~~~-----------------~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHhccC-----------------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999987543                 334578999999999999998873

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.65  E-value=0.0023  Score=54.25  Aligned_cols=25  Identities=36%  Similarity=0.640  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|.|..|+|||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5578999999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.64  E-value=0.0011  Score=52.39  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            56999999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.63  E-value=0.0013  Score=55.58  Aligned_cols=25  Identities=36%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|..|+|||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4478999999999999999999887

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.00098  Score=52.23  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|.|+.|+||||||+.+...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.61  E-value=0.00069  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..+.|+|..|+|||||++.+++.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999984

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.61  E-value=0.0011  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+..+|.|.|+.|+||||+++.+..
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999999866

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.61  E-value=0.0014  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.733  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+|+|+|+.|+|||||++.+...
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            568999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.60  E-value=0.0014  Score=49.75  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++++|+.|.|||||++.+..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999999876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.60  E-value=0.0014  Score=54.46  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             ceeccchhHHHHHHHhcCC--CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSG--SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+...+...  ......+..  .   .....-+-++|..|+|||+||+.+.+.
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~--~---~~~~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLR--H---EVTPKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHH--H---HCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhccccc--c---cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            5899999888888776541  000000000  0   011345679999999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.59  E-value=0.0015  Score=50.94  Aligned_cols=24  Identities=54%  Similarity=0.720  Sum_probs=21.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ....+|+|.|+.|+||||+++.+.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La   29 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLR   29 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.56  E-value=0.0019  Score=50.45  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.|.|+.|+||||+++.+.+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.56  E-value=0.0013  Score=53.24  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+|+|+|+.|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            5699999999999999999998

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.55  E-value=0.0015  Score=55.04  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|+|+|++|+|||||++.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.55  E-value=0.0039  Score=49.92  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      -.++.|+|..|+|||||++.+........    .-..++|+.....++..++
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~   75 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL   75 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence            56999999999999999999877321111    1245788877776555443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.54  E-value=0.0011  Score=52.93  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.53  E-value=0.0018  Score=52.54  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|+|.|..|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.52  E-value=0.002  Score=53.78  Aligned_cols=53  Identities=23%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+...+........        .+......+.++|+.|+||||||+.+.+.
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~--------~~~~~~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLK--------DPNRPIGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCS--------CTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCC--------CCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence            578998888888777654310000        00233568999999999999999999884

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.47  E-value=0.0027  Score=54.58  Aligned_cols=59  Identities=24%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+...+...-....  .+............+-++|+.|+|||++|+.+.+.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLR--NGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHH--TTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhc--cccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            478888888887776620000000  00000000123456889999999999999999883

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.47  E-value=0.0015  Score=52.81  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999873

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.47  E-value=0.0014  Score=51.56  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|+|+.|+|||||++.+...
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34678999999999999999998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.46  E-value=0.0015  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999873

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.45  E-value=0.0026  Score=54.59  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.|.+.+...-.....-..+     ....+-|-++|+.|+|||+||+.+.+.
T Consensus        52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~-----~~~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           52 DVAGLEGAKEALKEAVILPVKFPHLFKGN-----RKPTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             GSCCGGGHHHHHHHHTHHHHHCGGGGCSS-----CCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHhcC-----CCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            68999999988887763110000000000     122345778999999999999999984

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.45  E-value=0.0022  Score=49.47  Aligned_cols=25  Identities=36%  Similarity=0.499  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|.|+.|+||||+++.+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.45  E-value=0.0026  Score=55.23  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+++.........-..  .   .....-+-|+|..|+|||+||+.|.+.
T Consensus       116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          116 DIAGQDLAKQALQEIVILPSLRPELFTG--L---RAPARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCG--G---GCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhccCHHHhcc--c---CCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999888877321000000000  0   112456889999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.44  E-value=0.0016  Score=52.11  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-.+++|+|+.|+|||||++.+...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            34679999999999999999999873

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.44  E-value=0.0014  Score=50.24  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.|+|+.|+||||+++.+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            356788999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.43  E-value=0.0017  Score=52.72  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.+..-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            79999999999999999999873

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.42  E-value=0.0021  Score=50.55  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..++|.|+|+.|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            467899999999999999999886

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.39  E-value=0.003  Score=50.09  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|+|.+|+|||||+..+...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.38  E-value=0.0018  Score=52.80  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      -.+|+|+|+.|+|||||++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999999987

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.37  E-value=0.0024  Score=49.92  Aligned_cols=25  Identities=24%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.|.|+.|+||||+|+.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3355899999999999999999866

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.37  E-value=0.0019  Score=53.17  Aligned_cols=24  Identities=42%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999873

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.36  E-value=0.0019  Score=52.83  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+.+..-..+..-..-+     .....-+-++|+.|+||||||+.+.+.
T Consensus        12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           12 DMAGNEEAKEEVVEIVDFLKYPERYANLG-----AKIPKGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             TSSSCTTTHHHHHHHHHHHHCHHHHHHHS-----CCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHChHHHHHCC-----CCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            68898888777766543100000000000     011222569999999999999999884

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.36  E-value=0.002  Score=52.15  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999884

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.35  E-value=0.002  Score=52.28  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.34  E-value=0.0024  Score=53.66  Aligned_cols=25  Identities=36%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+++|+|+.|+|||||++.+..-
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4679999999999999999998873

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.34  E-value=0.0043  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .....|.|+|+.|+||||+++.+..
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3467799999999999999998776

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.33  E-value=0.0023  Score=50.83  Aligned_cols=47  Identities=23%  Similarity=0.247  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCccc---cc-CCCceEEEEeCCCCCHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVV---SA-HFDKKIWVCVSEPFDDI  244 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v---~~-~Fd~~~wV~Vs~~~~~~  244 (251)
                      .-.+++|+|+.|+|||||++.+......   .. .-...+|+.-...+...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~   74 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   74 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence            3579999999999999999999752111   11 12346777655544433

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.32  E-value=0.0021  Score=52.73  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999873

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.32  E-value=0.0054  Score=54.90  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|..|+|||||++.+..
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHH
Confidence            3467999999999999999999887

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.32  E-value=0.0022  Score=49.63  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|.|.|+.|+||||+++.+.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.32  E-value=0.0034  Score=52.82  Aligned_cols=45  Identities=27%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..+..+.+++....                ...++-+.|+.|+||||+|+.+.+.
T Consensus        27 ~ivg~~~~~~~l~~~l~~~~----------------~~~~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           27 ECILPAFDKETFKSITSKGK----------------IPHIILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             TSCCCHHHHHHHHHHHHTTC----------------CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHcCC----------------CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            68999999999999987543                2457788899999999999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.32  E-value=0.0022  Score=49.68  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.|+|+|..|+|||||++.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            567899999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.32  E-value=0.0021  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            45899999999999999999987

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.31  E-value=0.0036  Score=55.46  Aligned_cols=53  Identities=23%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCC---CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSG---SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.|.+.+...   .+- .  .++     ....+-|-++|+.|+|||+||+.+.+.
T Consensus       135 di~G~~~~k~~l~~~v~~p~~~~~~-~--~~~-----~~~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          135 DVAGLEGAKEALKEAVILPIKFPHL-F--TGK-----RTPWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             GSCSCHHHHHHHHHHHTHHHHCTTT-T--SGG-----GCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHH-h--hcc-----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            6899999888888776311   000 0  000     122467889999999999999999984

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.30  E-value=0.0028  Score=48.91  Aligned_cols=25  Identities=44%  Similarity=0.569  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|+|+.|+||||+++.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999988654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.30  E-value=0.0022  Score=52.31  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999983

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.30  E-value=0.0016  Score=51.61  Aligned_cols=23  Identities=35%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.+..-
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            38999999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.30  E-value=0.0022  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcC
Confidence            458999999999999999999873

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.30  E-value=0.0048  Score=51.39  Aligned_cols=25  Identities=36%  Similarity=0.573  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|-|.|+.|+|||||++.+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999976

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.29  E-value=0.0019  Score=51.50  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.28  E-value=0.0023  Score=51.47  Aligned_cols=24  Identities=29%  Similarity=0.601  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.28  E-value=0.0024  Score=51.82  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999999873

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.28  E-value=0.0033  Score=51.26  Aligned_cols=25  Identities=40%  Similarity=0.620  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.++|+.|+||||+|+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4468999999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.26  E-value=0.003  Score=53.10  Aligned_cols=25  Identities=44%  Similarity=0.704  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|..|+|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999887

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.26  E-value=0.0023  Score=52.73  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||++.+..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            45899999999999999999987

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.25  E-value=0.0025  Score=53.49  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=35.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|......++.+.+..-.              .. ..-|-|+|..|+|||++|+.|++.
T Consensus         3 ~iig~s~~~~~~~~~~~~~a--------------~~-~~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVA--------------PS-DATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHC--------------ST-TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CcEECCHHHHHHHHHHHHHh--------------CC-CCcEEEECCCCchHHHHHHHHHHh
Confidence            58899988888888775432              11 234569999999999999999983

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.25  E-value=0.0024  Score=52.38  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.25  E-value=0.0024  Score=52.03  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999874

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.24  E-value=0.0028  Score=53.57  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+.+||+|.|-|||||||.+-.+-
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA   69 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLS   69 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHH
Confidence            458999999999999999876653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.24  E-value=0.0025  Score=52.60  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999884

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.24  E-value=0.0077  Score=54.15  Aligned_cols=42  Identities=24%  Similarity=0.222  Sum_probs=35.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+...+..+.                   -+-++|+.|+|||+||+.+.+.
T Consensus        23 ~ivGq~~~i~~l~~al~~~~-------------------~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHTC-------------------EEEEECCSSSSHHHHHHHGGGG
T ss_pred             hhHHHHHHHHHHHHHHhcCC-------------------eeEeecCchHHHHHHHHHHHHH
Confidence            68999998888887776533                   4678999999999999999984

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.23  E-value=0.0025  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999873

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.23  E-value=0.0052  Score=54.56  Aligned_cols=46  Identities=26%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             ceeccchhHHHHH---HHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVA---NLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~---~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+.   +++....               ...+-+-++|+.|+|||+||+.+.+.
T Consensus        38 ~iiG~~~~~~~l~~~~~~~~~~~---------------~~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           38 GLVGQENAREACGVIVELIKSKK---------------MAGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTC---------------CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhCC---------------CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence            6899998877544   4443332               22345778999999999999999984

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.22  E-value=0.0016  Score=52.18  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=16.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      -.+++|+|+.|+|||||++.+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999998

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.22  E-value=0.0032  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|+|.+|+|||||+..+...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999999887653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.22  E-value=0.0027  Score=53.05  Aligned_cols=26  Identities=35%  Similarity=0.659  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .....+-++|+.|+|||+||+.|.+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999984

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.21  E-value=0.0024  Score=49.60  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|.|.|+.|+||||+++.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999866

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.21  E-value=0.0026  Score=52.24  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            458999999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.20  E-value=0.0026  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999873

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.20  E-value=0.0022  Score=52.03  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.|+|+.|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.20  E-value=0.0026  Score=51.88  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            358999999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.19  E-value=0.0034  Score=52.11  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ....+|+|.|+.|+||||+|+.+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            447899999999999999999986

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.17  E-value=0.0027  Score=52.72  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.17  E-value=0.0036  Score=53.25  Aligned_cols=26  Identities=35%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+++|+|+.|+|||||++.+..-
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999999998873

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.16  E-value=0.0028  Score=51.88  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.15  E-value=0.0035  Score=53.97  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+++|+|..|+|||||++.+..-
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            34689999999999999999998873

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.13  E-value=0.0032  Score=52.70  Aligned_cols=24  Identities=29%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|+++|.+|+||||++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.11  E-value=0.0026  Score=52.59  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.++|+.|+||||||+.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999884

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.10  E-value=0.0033  Score=48.39  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...++.|+|..|+|||||++.+...
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHh
Confidence            3779999999999999999887653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.08  E-value=0.0031  Score=53.27  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+..++.+...+....                   -+-++|..|+|||+||+.+.+
T Consensus        28 ~i~g~~~~~~~l~~~l~~~~-------------------~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           28 VVVGQKYMINRLLIGICTGG-------------------HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC-------------------CEEEESCCCHHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHcCC-------------------eEEEECCCCCcHHHHHHHHHH
Confidence            68999988888888776532                   367899999999999999987

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.08  E-value=0.0048  Score=51.98  Aligned_cols=24  Identities=38%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-|+|+.|+||||||+.+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            556889999999999999999984

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.07  E-value=0.0036  Score=50.16  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-.+|+|.|..|+|||||++.+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44679999999999999999999873

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.07  E-value=0.0035  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|.|+.|+||||+++.+...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.07  E-value=0.0098  Score=50.33  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|.+|+||||++..+..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999998876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.06  E-value=0.0039  Score=48.80  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+-.+|+|.|+.|+||||+++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            5578999999999999999998765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.04  E-value=0.0041  Score=49.03  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|.|+.|+||||+++.+...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998763

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.03  E-value=0.0066  Score=49.25  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .....++.+.|.||+|||||+..+..
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence            34578889999999999999999873

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.02  E-value=0.0056  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-++|..|+|||+||+.+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999984

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.01  E-value=0.004  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|.|+.|+||||+++.+...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            568999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.00  E-value=0.0027  Score=56.25  Aligned_cols=24  Identities=38%  Similarity=0.235  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-|+|+.|+||||||+.+.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            567889999999999999999983

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0051  Score=54.18  Aligned_cols=53  Identities=19%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-    .+-  .. .     -+-...+-|-++|++|+|||+||+.|.+.
T Consensus       173 digGl~~~k~~l~e~v~~pl~~p~~--~~-~-----~g~~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          173 DVGGLDMQKQEIREAVELPLVQADL--YE-Q-----IGIDPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHH--HH-H-----HCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            688999888888765432    100  00 0     00133566889999999999999999984

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.99  E-value=0.0038  Score=51.37  Aligned_cols=23  Identities=43%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|..|+|||||++.+..-
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999863

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.98  E-value=0.0043  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            56999999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.98  E-value=0.0033  Score=51.87  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.|+|+.|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            889999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.96  E-value=0.011  Score=52.16  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...++|.++|.+|+||||++-.+..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4478999999999999999988774

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.94  E-value=0.0083  Score=51.43  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|.+|+|||||+..+..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.93  E-value=0.0053  Score=51.64  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|+|.+|+||||++..+..-
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence            34789999999999999999998763

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.91  E-value=0.0051  Score=55.18  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++++.+++...-.....-..    -+.....-+-|+|..|+|||+||+.+.+.
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~----~g~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKA----IGVKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHH----HTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            5899999888888776432000000000    00012345789999999999999999874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.89  E-value=0.019  Score=49.01  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      ..-.++-|+|..|+||||||..+........    .=..++|+.....|+..++.+
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~  175 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD  175 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence            3467999999999999999999876421211    123678999888888766543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.88  E-value=0.0063  Score=48.55  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -...+||-|.|+.|+||||.|+.+.+.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999999873

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.88  E-value=0.0037  Score=51.04  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+|.|+|+.|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.87  E-value=0.0046  Score=51.60  Aligned_cols=24  Identities=29%  Similarity=0.601  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.86  E-value=0.014  Score=46.87  Aligned_cols=25  Identities=28%  Similarity=0.539  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.+|.|.|+.|+||||+++.+.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999884

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.83  E-value=0.0036  Score=52.65  Aligned_cols=23  Identities=35%  Similarity=0.684  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|.|||||++.+..
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHc
Confidence            56899999999999999999977

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.0067  Score=53.54  Aligned_cols=53  Identities=19%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-    .+-  .. .     -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus       182 digGl~~~k~~l~e~v~~pl~~p~~--f~-~-----~g~~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          182 GIGGLTEQIRELREVIELPLKNPEI--FQ-R-----VGIKPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHCHHH--HH-H-----HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            688998888777665432    110  00 0     00133677889999999999999999984

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.81  E-value=0.0067  Score=45.57  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..|+|+|.+|+|||||.+.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.81  E-value=0.005  Score=51.76  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||++.+..
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            56899999999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.0065  Score=53.57  Aligned_cols=53  Identities=21%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.    ..+-  .. .     -+-...+-|-++|++|+|||+||+.|.+.
T Consensus       182 digGl~~~k~~l~e~v~~pl~~pe~--f~-~-----~g~~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          182 DVGGLDKQIEELVEAIVLPMKRADK--FK-D-----MGIRAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCSHH--HH-H-----HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            68899988888876532    2210  00 0     00133667889999999999999999984

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.79  E-value=0.011  Score=50.67  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCC----CceEEEEeCCCCCHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHF----DKKIWVCVSEPFDDIR  245 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F----d~~~wV~Vs~~~~~~~  245 (251)
                      ..-.++.|+|..|+|||||++.+..........    ..++|+.-...+....
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~  181 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER  181 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence            346899999999999999999988742111111    2448887766554443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.79  E-value=0.013  Score=51.65  Aligned_cols=24  Identities=46%  Similarity=0.638  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.++|.+|+||||++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.77  E-value=0.0053  Score=48.58  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.++.|+|..|+|||||++.+...
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999998853

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.77  E-value=0.016  Score=48.90  Aligned_cols=49  Identities=20%  Similarity=0.225  Sum_probs=35.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccC----CCceEEEEeCCCCCHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAH----FDKKIWVCVSEPFDDIRIA  247 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~----Fd~~~wV~Vs~~~~~~~i~  247 (251)
                      -.++-|+|..|+||||||..+.........    =..++|+.....|+..++.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~  159 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE  159 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence            568999999999999999998764211110    1367899888887776654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.77  E-value=0.0086  Score=51.59  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+-++|+.|+||||||+.+.+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            345779999999999999999873

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.007  Score=46.47  Aligned_cols=25  Identities=36%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....|.|+|..|+|||||+..+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3557889999999999999998875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.74  E-value=0.0057  Score=49.39  Aligned_cols=23  Identities=22%  Similarity=0.596  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|.|.|+.|+||||+++.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998863

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.006  Score=53.18  Aligned_cols=53  Identities=21%  Similarity=0.159  Sum_probs=35.4

Q ss_pred             ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.-    .+-  .. ..     +-...+-|-++|++|+|||+||+.|.+.
T Consensus       149 dIgGl~~~k~~l~e~v~~Pl~~pe~--f~-~~-----gi~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          149 MVGGLTKQIKEIKEVIELPVKHPEL--FE-SL-----GIAQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHH--HH-HH-----TCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHH--HH-hC-----CCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            688999888777665432    110  00 00     0123566779999999999999999984

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.71  E-value=0.0058  Score=52.67  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcC
Confidence            458999999999999999999873

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.71  E-value=0.0037  Score=53.00  Aligned_cols=44  Identities=18%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..+..+...+....                 ..-+-++|..|+|||+||+.+.+.
T Consensus        25 ~i~G~~~~~~~l~~~~~~~~-----------------~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           25 AIVGQEDMKLALLLTAVDPG-----------------IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHCGG-----------------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHhhCCC-----------------CceEEEECCCCccHHHHHHHHHHh
Confidence            58888876655544443322                 112789999999999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.70  E-value=0.0057  Score=52.58  Aligned_cols=24  Identities=42%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.|..-
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            458999999999999999999873

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.70  E-value=0.0074  Score=48.82  Aligned_cols=24  Identities=21%  Similarity=0.033  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.|.|+.|+||||+|+.+.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.65  E-value=0.0063  Score=52.27  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999863

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.61  E-value=0.0078  Score=53.11  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|+|.+|+||||++..+...
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999887763

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.58  E-value=0.011  Score=52.88  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -+-++|+.|+||||||+.|.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3779999999999999999984

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.57  E-value=0.007  Score=52.07  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCC
Confidence            458999999999999999999873

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.56  E-value=0.0081  Score=48.22  Aligned_cols=25  Identities=36%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|.|+.|+||||+++.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.55  E-value=0.018  Score=48.55  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCccccc---------CC-----CceEEEEeCCCCCHHHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSA---------HF-----DKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~---------~F-----d~~~wV~Vs~~~~~~~i~~  248 (251)
                      .-.++-|+|..|+||||||..+..+.....         ..     ..++|+.....|+..++.+
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~  161 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ  161 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence            367999999999999999998876421111         11     3678999888887776653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.55  E-value=0.0071  Score=52.08  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            458999999999999999999873

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.54  E-value=0.0072  Score=52.24  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcC
Confidence            458999999999999999999873

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.53  E-value=0.0073  Score=44.95  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|.+|+|||||++.+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            446789999999999999998765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.50  E-value=0.0082  Score=45.90  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+..|+|..|.|||||+..|+-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999999863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.50  E-value=0.0076  Score=52.24  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.|..-
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcC
Confidence            458999999999999999999873

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.50  E-value=0.021  Score=50.49  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...||.++|.+|+||||++..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            478999999999999999888765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.50  E-value=0.0076  Score=52.12  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            458999999999999999999873

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.49  E-value=0.0071  Score=54.34  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.|+|+.|+||||||+.|.+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999874

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.48  E-value=0.0094  Score=49.82  Aligned_cols=25  Identities=28%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|+|+|.+|+||||++..+..-
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~  121 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALY  121 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999998763

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.46  E-value=0.0091  Score=45.27  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..-|.|+|..|+|||||++.+.++.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Confidence            4568899999999999999987653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.45  E-value=0.016  Score=44.19  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...-|.|+|.+|+|||||.+.+.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999999876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.44  E-value=0.0064  Score=49.68  Aligned_cols=26  Identities=27%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .....|.|.|..|+||||+++.+.+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999998874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.43  E-value=0.0084  Score=49.82  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.++.|+|..|+|||||++.+...
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            459999999999999999998874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.42  E-value=0.0085  Score=49.39  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++.|+|.+|+|||||+..+..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999999876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.42  E-value=0.011  Score=54.32  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+.-++.+...+..+                   ..+.|+|+.|+||||||+.+.+-
T Consensus        42 ~i~G~~~~l~~l~~~i~~g-------------------~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQK-------------------RHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTT-------------------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEECchhhHhhccccccCC-------------------CEEEEEeCCCCCHHHHHHHHhcc
Confidence            5788877776666655432                   37899999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.42  E-value=0.0085  Score=44.44  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            345789999999999999998765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.42  E-value=0.0063  Score=52.15  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.|..-
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcC
Confidence            458999999999999999999873

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.41  E-value=0.0083  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|.|+|.+|+|||||+..+.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46789999999999999999765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.40  E-value=0.008  Score=46.07  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhh
Confidence            456789999999999999988764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.40  E-value=0.056  Score=46.20  Aligned_cols=44  Identities=23%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      .-.++.|+|.+|+||||||..+....  ...=..++|+.....++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~  103 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDP  103 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCH
Confidence            35689999999999999999887632  111135678877766654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.39  E-value=0.0094  Score=47.73  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....|.|.|+.|+||||+|+.+.+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999876

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.39  E-value=0.018  Score=50.60  Aligned_cols=23  Identities=35%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus       167 ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHh
Confidence            56999999999999999999876

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.37  E-value=0.013  Score=45.00  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|.|+|..|+|||||...+.+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346778999999999999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.36  E-value=0.016  Score=43.60  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .....|.|+|..|+|||||+..+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44667899999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.36  E-value=0.013  Score=44.71  Aligned_cols=27  Identities=26%  Similarity=0.480  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|.|+|..|+|||||+..+.+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            345678899999999999999988763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.35  E-value=0.0078  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=19.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.| +|+|..|+|||||++.++..
T Consensus        19 ~~I-~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTL-MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEE-EEEEETTSSHHHHHHHHHC-
T ss_pred             EEE-EEECCCCCCHHHHHHHHhCC
Confidence            444 99999999999999998763

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.34  E-value=0.0073  Score=52.95  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            367999999999999999999988

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.012  Score=52.06  Aligned_cols=53  Identities=28%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.    ..+-  .. .     -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~--f~-~-----~Gi~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPER--FA-T-----LGIDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHH--HH-H-----HTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHH--HH-H-----CCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            58899988888876532    1110  00 0     00133667779999999999999999984

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.33  E-value=0.024  Score=50.90  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|.|+|.+|+|||||+..+..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999998873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.32  E-value=0.0094  Score=51.25  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...++|+|..|+|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999866

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.31  E-value=0.0057  Score=47.74  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      -..|+|+|..|+|||||.+.+....
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5689999999999999999988753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.30  E-value=0.0056  Score=52.57  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.|..-
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.30  E-value=0.0088  Score=51.23  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+.+.
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999999885

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.29  E-value=0.011  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            56999999999999999999986

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.29  E-value=0.012  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456889999999999999998765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.28  E-value=0.01  Score=44.73  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...--|.|+|..|+|||||+..+.++.
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence            346678999999999999999988753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.26  E-value=0.017  Score=54.59  Aligned_cols=53  Identities=25%  Similarity=0.300  Sum_probs=37.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+.+.+........        .+......+-++|+.|+|||+||+.+.+.
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~~--------~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~  544 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGLK--------DPKRPIGSFIFLGPTGVGKTELARALAES  544 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTCS--------CTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cCcChHHHHHHHHHHHHHHHcccC--------CCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            589999888888777753221000        00234567899999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.26  E-value=0.01  Score=44.23  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468899999999999999987653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.26  E-value=0.012  Score=45.27  Aligned_cols=28  Identities=18%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .....-|.|+|..|+|||||.+.+.+..
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3557789999999999999999988763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.25  E-value=0.028  Score=48.24  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      .-.++.|+|..|+|||||+..+.....  ..=..++|+.....++.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~  103 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDP  103 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccch
Confidence            367999999999999999999887422  11124567766665553

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.24  E-value=0.01  Score=44.76  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...--|.|+|..|+|||||.+.+.++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            44667899999999999999988665

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.24  E-value=0.0091  Score=46.40  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|.|+|.+|+|||||++.+.++
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.24  E-value=0.013  Score=44.78  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +..--|.|+|..|+|||||...+.++.
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence            335678999999999999999987653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.18  E-value=0.012  Score=51.64  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.|+|+.|+||||+|+.+...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            44689999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.17  E-value=0.011  Score=51.43  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.|..-
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            458999999999999999999873

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.16  E-value=0.015  Score=49.43  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|.|+|+.|+|||||+..+...
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            469999999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.16  E-value=0.013  Score=45.90  Aligned_cols=27  Identities=33%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|.|+|..|+|||||+..+.+..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            346678899999999999999988753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.15  E-value=0.011  Score=44.53  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....-|.|+|..|+|||||.+.+.+.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.15  E-value=0.11  Score=44.27  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....|+|+|..|+|||||...+....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999999998753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.15  E-value=0.018  Score=54.68  Aligned_cols=53  Identities=23%  Similarity=0.313  Sum_probs=36.1

Q ss_pred             ceeccchhHHHHHHHh----cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLL----MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+++    ...+-  . ...+     ....+-|-++|+.|+|||+||+.|.+.
T Consensus       205 dIgGl~~~~~~l~e~v~~pl~~p~~--f-~~~g-----~~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          205 DIGGCRKQLAQIKEMVELPLRHPAL--F-KAIG-----VKPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             GCCSCCTTHHHHHHHHHHHHHCCGG--G-TSCC-----CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             hhcCHHHHHHHHHHHHHHHccCHHH--H-hhcC-----CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5788888887776654    22210  0 0000     233667889999999999999999995

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.13  E-value=0.018  Score=44.17  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            446789999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.12  E-value=0.015  Score=49.48  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+++|+|..|+|||||.+.+..
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999999873

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.11  E-value=0.012  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            56899999999999999999876

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.11  E-value=0.012  Score=44.28  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||.+.+.+.
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3567899999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.10  E-value=0.013  Score=44.87  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            456889999999999999887664

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.10  E-value=0.012  Score=44.21  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..--|.|+|..|+|||||.+.+.+..
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            35678899999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.10  E-value=0.012  Score=43.71  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||...+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.09  E-value=0.012  Score=45.15  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ---|.|+|.+|+|||||+..+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999776554

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.09  E-value=0.01  Score=51.01  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            358999999999999999998873

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.08  E-value=0.012  Score=43.84  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-|.|+|..|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999999654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.07  E-value=0.015  Score=49.78  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|+|+|..|+|||||...+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.07  E-value=0.015  Score=44.97  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...--|.|+|.+|+|||||++.+.+.
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc
Confidence            34556889999999999999988774

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.05  E-value=0.012  Score=45.27  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|.|+|.+|+|||||.+.+.++
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999999999999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.03  E-value=0.013  Score=44.59  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||++.+.++
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3556889999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.03  E-value=0.014  Score=44.71  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...--|.|+|..|+|||||.+.+.+..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            335578899999999999999988764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.017  Score=50.75  Aligned_cols=53  Identities=21%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.+..+++|.+.+.    ..+-  .. .     -+-...+-|-++|+.|+|||+||+.|.+.
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~--f~-~-----~Gi~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPEL--YE-E-----MGIKPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHH--HH-H-----HTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHH--HH-h-----CCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence            67899888877766542    2110  00 0     00133567889999999999999999984

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.01  E-value=0.02  Score=43.28  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-|.|+|..|+|||||...+.++
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            567889999999999999998864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.01  E-value=0.017  Score=48.56  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|.|+.|+||||||..+...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh
Confidence            3679999999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.00  E-value=0.013  Score=50.24  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+.+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45999999999999999998865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.99  E-value=0.016  Score=43.76  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||...+.+..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            4568999999999999999987653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.99  E-value=0.033  Score=48.54  Aligned_cols=49  Identities=16%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      .-.++.|+|..|+|||||+..+.-......    .-..++|+.-...++...+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl  229 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL  229 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence            356999999999999999997642111111    2235778877666665544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.99  E-value=0.011  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|..|.|||||++.+..-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999873

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.98  E-value=0.013  Score=44.35  Aligned_cols=24  Identities=29%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999998865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.98  E-value=0.012  Score=51.76  Aligned_cols=21  Identities=43%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++|+|..|+|||||++.++.-
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            999999999999999999874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.97  E-value=0.014  Score=44.86  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456899999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.95  E-value=0.014  Score=43.87  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|.|+|..|+|||||...+.++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.94  E-value=0.011  Score=52.64  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+.+-
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            458999999999999999998874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.93  E-value=0.012  Score=45.58  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...--|.|+|.+|+|||||++.+.+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3456789999999999999999853

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.91  E-value=0.015  Score=43.98  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=20.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345779999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.91  E-value=0.014  Score=45.05  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...-|.|+|..|+|||||+..+.++
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3557889999999999999998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.90  E-value=0.015  Score=44.35  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=21.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||+..+.+.
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.90  E-value=0.015  Score=43.95  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            446889999999999999998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.88  E-value=0.014  Score=52.92  Aligned_cols=23  Identities=39%  Similarity=0.644  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.++.-
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.88  E-value=0.015  Score=52.73  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=22.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.+++|+|+.|+|||||++.+..-
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3579999999999999999999873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.86  E-value=0.025  Score=45.24  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....|.|.|+.|+||||+++.+.+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999884

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.86  E-value=0.017  Score=43.99  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            5678999999999999999998754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.85  E-value=0.015  Score=45.04  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...--|.|+|..|+|||||++.+.+..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence            446778999999999999999987653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.85  E-value=0.038  Score=42.10  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            567899999999999999998854

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.84  E-value=0.015  Score=44.73  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.++
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456899999999999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.84  E-value=0.017  Score=44.64  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      +..--|.|+|..|+|||||+..+.+..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            346678999999999999999987753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.83  E-value=0.015  Score=52.84  Aligned_cols=23  Identities=52%  Similarity=0.816  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.++.-
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.83  E-value=0.019  Score=48.94  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|.+|+|||||+..+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3478999999999999999999853

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.82  E-value=0.019  Score=48.04  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....|+|+|.+|+|||||...+....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            35689999999999999999988763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.81  E-value=0.015  Score=52.70  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus        47 Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           47 GMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            459999999999999999999873

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.80  E-value=0.016  Score=44.71  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||+..+.++
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999998765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.80  E-value=0.017  Score=46.24  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...-|+|+|..|+|||||...+....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            35678999999999999999998753

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.79  E-value=0.03  Score=48.09  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      -.++-|.|.+|+||||||..+.....  ..=..++|+.....++.
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~  105 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDP  105 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccH
Confidence            56899999999999999998876422  22235778887766654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.77  E-value=0.014  Score=48.81  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+|.++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999998875

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.77  E-value=0.03  Score=49.42  Aligned_cols=58  Identities=22%  Similarity=0.207  Sum_probs=34.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+.-++.+...+...-.......+...   ....+-|-++|+.|+||||||+.+...
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~---~~~~~~iLl~GppGtGKT~lar~lA~~   73 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRH---EVTPKNILMIGPTGVGKTEIARRLAKL   73 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTT---TCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhcccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            5889888887776655221000000000000   112455889999999999999999873

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.77  E-value=0.026  Score=44.77  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....-|.|+|..|+|||||+..+.+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678899999999999999999876

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.76  E-value=0.018  Score=44.49  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..--|.|+|..|+|||||...+.+..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            35568899999999999999988653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.75  E-value=0.017  Score=44.27  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||++.+.++.
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4568999999999999999988753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.75  E-value=0.017  Score=44.49  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||+..+.+.
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.74  E-value=0.014  Score=52.99  Aligned_cols=50  Identities=26%  Similarity=0.391  Sum_probs=33.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++-+..+.+.+.-..-         +.  .....++.++|+.|+||||||+.+.+.
T Consensus        82 di~G~~~vk~~i~~~~~l~~~---------~~--~~~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKL---------TK--SLKGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHH---------SS--SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHh---------cc--cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            467877766666544321110         00  123568999999999999999999873

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.74  E-value=0.027  Score=45.46  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEE
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVC  236 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~  236 (251)
                      ..+|.|.|+.|+||||+++.+..... ...+..++...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r   63 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR   63 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence            46899999999999999999988432 23455444443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.74  E-value=0.018  Score=44.70  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456889999999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.73  E-value=0.017  Score=44.80  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...-|.|+|..|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            35568999999999999999988753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.73  E-value=0.017  Score=46.10  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++.|.|..|+|||||+..+..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999877654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.73  E-value=0.017  Score=45.27  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999998775

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.72  E-value=0.018  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+++++|+.|+|||||++.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            488999999999999999998

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.71  E-value=0.018  Score=48.65  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=25.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEe
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCV  237 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~V  237 (251)
                      -+++-|+|++|+||||||..+...     .-..++|+++
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence            456789999999999999999874     1124566666

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.71  E-value=0.016  Score=51.28  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+.+-
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            568999999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.70  E-value=0.017  Score=44.40  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||++.+.++.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4458899999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.69  E-value=0.018  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+++|+|+.|+|||||++.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            7999999999999999999875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.69  E-value=0.018  Score=44.26  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            4567899999999999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.68  E-value=0.019  Score=43.95  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999998864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.66  E-value=0.019  Score=49.34  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .+++|+|..|+|||||++.+....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            489999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.65  E-value=0.018  Score=53.10  Aligned_cols=23  Identities=39%  Similarity=0.644  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.+..-
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999999984

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.65  E-value=0.018  Score=44.97  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456889999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.62  E-value=0.019  Score=45.05  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            346889999999999999999865

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.61  E-value=0.021  Score=47.90  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ......|+|+|..|+|||||...+...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            355889999999999999999998875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.60  E-value=0.019  Score=43.89  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||...+.++
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3567899999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.60  E-value=0.019  Score=43.83  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|.|+|..|+|||||+..+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.58  E-value=0.019  Score=44.36  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...--|.|+|..|+|||||+..+.++
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34667899999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.57  E-value=0.018  Score=50.50  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |+|+|..|+|||||++.++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            499999999999999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.56  E-value=0.015  Score=52.84  Aligned_cols=24  Identities=38%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+|.|+|+.|+|||||++.+...
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            479999999999999999999873

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.55  E-value=0.02  Score=43.52  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...--|.|+|..|+|||||.+.+.+.
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            33567889999999999999999865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.55  E-value=0.019  Score=44.03  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||.+.+.+.
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3456899999999999999998764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.54  E-value=0.024  Score=49.85  Aligned_cols=25  Identities=28%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|+|.+|+||||++..+..-
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998763

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.54  E-value=0.026  Score=41.99  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+..|+|+.|.|||||...|+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4688999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.019  Score=52.80  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            569999999999999999999873

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.019  Score=44.06  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            556889999999999999998864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.53  E-value=0.02  Score=44.47  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +..--|.|+|..|+|||||+..+.+.
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            34667889999999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.52  E-value=0.02  Score=52.76  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|..|+|||||++.+..-
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcC
Confidence            46899999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.48  E-value=0.02  Score=44.57  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|.|+|..|+|||||...+.++
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            46889999999999999998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.46  E-value=0.02  Score=52.69  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|+|||||++.+..-
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            469999999999999999999873

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.39  E-value=0.022  Score=43.67  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999998865

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.39  E-value=0.018  Score=45.21  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .....|.|+|..|+|||||...+.+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            346678999999999999999998864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.39  E-value=0.023  Score=47.47  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||.+.+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCcHHHHHHHhccc
Confidence            48899999999999999999874

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.38  E-value=0.023  Score=44.07  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||+..+.++
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3557899999999999999998765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.34  E-value=0.026  Score=44.11  Aligned_cols=24  Identities=29%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456899999999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.34  E-value=0.023  Score=44.00  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-|.|+|..|+|||||...+.++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346889999999999999998875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.33  E-value=0.024  Score=44.10  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...-|.|+|..|+|||||+..+.++
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3567889999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.28  E-value=0.023  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhc
Confidence            458999999999999999999873

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.28  E-value=0.02  Score=43.72  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||...+.++
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.28  E-value=0.017  Score=45.65  Aligned_cols=24  Identities=13%  Similarity=0.128  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.-+-|+|++|+||||+|..+.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999998777763

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.25  E-value=0.025  Score=44.13  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..--|.|+|..|+|||||++.+.++
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999998765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.25  E-value=0.045  Score=51.64  Aligned_cols=53  Identities=15%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..++.+...+.....      +...  .......+-++|+.|+|||+||+.+.+.
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~------g~~~--~~~p~~~~ll~G~~GtGKT~la~~la~~  511 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARA------GLGH--EHKPVGSFLFAGPTGVGKTEVTVQLSKA  511 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHT------TCSC--TTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhc------ccCC--CCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence            477888777777666542110      0000  0234567899999999999999999873

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.24  E-value=0.015  Score=44.11  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=11.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +..--|.|+|..|+|||||+..+.++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             SEEEEEEEECCCCC------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34667899999999999999988765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.23  E-value=0.045  Score=52.45  Aligned_cols=53  Identities=23%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.+..+..+...+......      ...  +......+-|+|+.|+|||+||+.+.+.
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g------~~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~  611 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAG------LKD--PNRPIGSFLFLGPTGVGKTELAKTLAAT  611 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG------CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcc------cCC--CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            5789988887777766432100      000  0233568899999999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.22  E-value=0.045  Score=46.04  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=28.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      -.++-|.|.+|+||||||..+..+.-.+.  ..++|++.-
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE  105 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE  105 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence            46888999999999999999876432222  466777654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.20  E-value=0.032  Score=43.39  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||...+.++
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999888764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.20  E-value=0.036  Score=44.88  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....-|+|+|..|+|||||...+...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            34667999999999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.17  E-value=0.027  Score=44.30  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||++.+.++
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456779999999999999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.16  E-value=0.025  Score=51.72  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.14  E-value=0.029  Score=44.31  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..-|.|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45689999999999999999874

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.12  E-value=0.056  Score=48.20  Aligned_cols=50  Identities=24%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC-HHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD-DIRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~-~~~i~~~  249 (251)
                      -.-++|+|..|+|||+|++.+.++. .+.+-++++++-|.+... +.+++++
T Consensus       165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~  215 (498)
T 1fx0_B          165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYME  215 (498)
T ss_dssp             TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHH
T ss_pred             CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHh
Confidence            4568999999999999998887741 233567889999998764 4444443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.10  E-value=0.026  Score=45.32  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+-.-++|.|+.|+||||+|+.+.+
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3345689999999999999998855

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.09  E-value=0.031  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.175  Sum_probs=22.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ++++|+|+|..|+|||||.+.+.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            47789999999999999999998753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.00  E-value=0.06  Score=44.00  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...|.++|..|+|||||...+.+..
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578899999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.99  E-value=0.013  Score=49.20  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            48999999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.92  E-value=0.063  Score=43.70  Aligned_cols=25  Identities=20%  Similarity=0.587  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .-.|.|+|..|+|||||...+....
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678999999999999999998753

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=93.88  E-value=0.053  Score=48.18  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC-HHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD-DIRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~-~~~i~~~  249 (251)
                      -.-++|+|..|+|||+|++.+.++. .+.+-+.++++-|.+... +.+++++
T Consensus       153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~  203 (482)
T 2ck3_D          153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHE  203 (482)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHH
T ss_pred             CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHH
Confidence            4578999999999999998887641 233457788898988763 3444443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.84  E-value=0.028  Score=48.26  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|+|+|..|+|||||++.++..
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            3599999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.81  E-value=0.062  Score=46.24  Aligned_cols=44  Identities=25%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDI  244 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~  244 (251)
                      -.++-|.|.+|+||||||..+....  ...=..++|+.....++..
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~  117 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV  117 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH
Confidence            5588889999999999998877642  2222367888877766543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=93.79  E-value=0.053  Score=42.61  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|+|+|+.|+||+|.|..+-+
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHH
Confidence            3467999999999999999988765

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=93.77  E-value=0.033  Score=45.72  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ---|.|+|..|+|||||...++..
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCC
Confidence            446789999999999999987654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=93.77  E-value=0.042  Score=49.59  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|-++|+.|.||||+|+.+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.73  E-value=0.042  Score=43.14  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..|.|.|+.|+||||||..+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.71  E-value=0.036  Score=43.72  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||+..+.+.
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            456899999999999999998765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.68  E-value=0.033  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+++|+|..|+|||||++.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999876

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=93.67  E-value=0.038  Score=43.86  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|-+|+|||+|+....++
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            3668999999999999987654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.61  E-value=0.029  Score=51.59  Aligned_cols=24  Identities=29%  Similarity=0.438  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            468999999999999999999873

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.61  E-value=0.72  Score=40.64  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      -.++.|.|..|+|||||+..+..+...... ..++|++..
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E  241 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE  241 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence            458999999999999999998875322211 246666543

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=93.60  E-value=0.053  Score=46.65  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             CCCEEEEEEc-CCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITG-MGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G-~gGvGKTTLa~~v~~  221 (251)
                      ...++|+|+| -||+||||+|-.+..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~  166 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAI  166 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHH
Confidence            5589999996 899999999887665

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.54  E-value=0.025  Score=51.72  Aligned_cols=24  Identities=38%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            458999999999999999998763

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=93.53  E-value=0.03  Score=44.87  Aligned_cols=24  Identities=29%  Similarity=0.464  Sum_probs=18.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..|.|-|+.|+||||+++.+.+.
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999884

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.49  E-value=0.091  Score=43.13  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..-|-++|++|+|||+||..+.+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHh
Confidence            45699999999999999999886

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.41  E-value=0.056  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+.+|+|..|.|||||...|+-
T Consensus        26 ~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           26 EGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHH
Confidence            45999999999999999999984

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.40  E-value=0.042  Score=49.61  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      -.+++|+|..|+|||||++.+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHH
Confidence            569999999999999999994

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=93.40  E-value=0.032  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -+-++|..|+|||+||+.+.+.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~  350 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRV  350 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTT
T ss_pred             ceEEECCCchHHHHHHHHHHHh
Confidence            4678999999999999999884

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.39  E-value=0.055  Score=49.42  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.|.|+.|+||||+|+.+...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~  419 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVT  419 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.38  E-value=0.13  Score=42.34  Aligned_cols=27  Identities=15%  Similarity=0.147  Sum_probs=23.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|+|+|..|+|||||...+....
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            446789999999999999999998753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.36  E-value=0.058  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+|.+.|+.|+||||+|+.+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999999999876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.34  E-value=0.033  Score=51.04  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999998773

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.34  E-value=0.019  Score=44.44  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=4.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      --|.|+|..|+|||||...+.++
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46889999999999999988775

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.33  E-value=0.061  Score=47.77  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      +.++|+|..|+|||||++.+.++... .+-+.++++-+.+..
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGert  192 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERT  192 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCc
Confidence            36899999999999999998875222 223566777787765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.32  E-value=0.095  Score=46.12  Aligned_cols=54  Identities=20%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             eccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          164 RGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       164 ~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .|.++-.+.+.+.+.....+..      .........-|+|+|..|+|||||.+.+....
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~------~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLE------SKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSS------SCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccch------hccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            4556666777766643220000      00002346789999999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.30  E-value=0.051  Score=48.30  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+|-++|+.|+||||+++.+...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998763

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.26  E-value=0.074  Score=47.82  Aligned_cols=26  Identities=8%  Similarity=0.118  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....+|.+.|+.|+||||+++.+...
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~  418 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLST  418 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHH
Confidence            34679999999999999999999884

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.25  E-value=0.06  Score=42.17  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+..|+|..|.||||+...|+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            4688999999999999999875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.24  E-value=0.023  Score=44.49  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||...+.+.
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            446789999999999999998854

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.08  E-value=0.072  Score=46.23  Aligned_cols=42  Identities=17%  Similarity=-0.024  Sum_probs=29.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVS-AHFDKKIWVCVSEPF  241 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd~~~wV~Vs~~~  241 (251)
                      -..++|+|..|+|||||++.|.+..... ..+++ +.+-|.+..
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~  216 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP  216 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred             CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence            5689999999999999999987632111 12333 457777655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.05  E-value=0.051  Score=52.58  Aligned_cols=23  Identities=43%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|+|||||++.+..
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=93.05  E-value=0.033  Score=51.26  Aligned_cols=26  Identities=15%  Similarity=0.135  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+..|+|+|..|+|||||++.+..-
T Consensus        43 l~lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           43 LALPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             ccCCeEEEECCCCChHHHHHHHHhCC
Confidence            34677999999999999999999874

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=93.05  E-value=0.13  Score=43.48  Aligned_cols=43  Identities=5%  Similarity=0.011  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCC--CceEEEEeCCCCCHH
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHF--DKKIWVCVSEPFDDI  244 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F--d~~~wV~Vs~~~~~~  244 (251)
                      .++-|+|..|+|||||+-.+...  ..+.+  ..++||.--..++..
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~   73 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA   73 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH
Confidence            37899999999999998887664  22221  356888877777654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=93.01  E-value=0.069  Score=45.29  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .++..|+|+.|.|||||+..|+
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            5788999999999999999874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=92.99  E-value=0.054  Score=47.08  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..++|+|..|+|||||.+.+...
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            458999999999999999999884

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=92.92  E-value=0.057  Score=44.95  Aligned_cols=26  Identities=19%  Similarity=0.150  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+..|+|+|..|+|||||...+...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            44778999999999999999999765

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=92.89  E-value=0.064  Score=43.57  Aligned_cols=25  Identities=40%  Similarity=0.599  Sum_probs=19.9

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISIT-GMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~-G~gGvGKTTLa~~v~~  221 (251)
                      ...++|+|+ +-||+||||+|-.+..
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~   50 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILAT   50 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence            457899998 5589999999987755

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.01  E-value=0.019  Score=44.51  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||...+.++
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            445789999999999999877654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=92.79  E-value=0.043  Score=43.08  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      .--|.|+|..|+|||||++.+
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTB
T ss_pred             ceEEEEECCCCCCHHHHHHHH
Confidence            346889999999999999983

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.79  E-value=0.12  Score=47.79  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHH-HHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918          201 IISITGMGGIGKTT-LARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       201 vi~I~G~gGvGKTT-La~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      +.-|+|++|.|||+ ++..|+.  -++.  +.+|.|+...+--+..|+.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~e  251 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVE  251 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHH
Confidence            55689999999996 4444544  2222  3467777766555555544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=92.75  E-value=0.058  Score=48.65  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.++.|.|..|+|||||++.+...
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~  304 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVEN  304 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            569999999999999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=92.74  E-value=0.042  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...++|+|..|+|||||.+.+...
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            456999999999999999999875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=92.68  E-value=0.0096  Score=47.85  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+++|+|+.|+|||||++.|+.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3668899999999999998765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=92.66  E-value=0.074  Score=45.70  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .++..|+|+.|.|||||...|+
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3578899999999999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=92.66  E-value=0.067  Score=46.92  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+.+|+|+.|.|||||...|+-
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.59  E-value=0.043  Score=53.11  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|..|.|||||++.+..-
T Consensus       700 eivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999863

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=92.56  E-value=0.2  Score=44.04  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....-|+|+|..|+|||||...+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            346788999999999999999998764

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=92.39  E-value=0.14  Score=42.85  Aligned_cols=23  Identities=17%  Similarity=-0.021  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+-++|+.|+||||+|+.+.+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~   40 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPE   40 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            67888999999999999999976

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.29  E-value=0.057  Score=45.46  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+.+|+|..|.|||||...|+
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHH
Confidence            489999999999999999998

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=92.25  E-value=0.094  Score=45.43  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=20.7

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISIT-GMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~-G~gGvGKTTLa~~v~~  221 (251)
                      ...++|+|+ |-||+||||+|-.+-.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~  131 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAH  131 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHH
Confidence            458899999 7799999998877654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=92.14  E-value=0.072  Score=45.03  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 046918          201 IISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .|.|+|..|+|||||+..+.+..
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~  189 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE  189 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC
T ss_pred             eEEEECCCCccHHHHHHHHhCCC
Confidence            68999999999999999988753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=92.14  E-value=0.031  Score=48.58  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 046918          201 IISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~  220 (251)
                      +++|+|..|.|||||.+.|+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999983

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=92.06  E-value=0.067  Score=44.21  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             CEEEEEEc---CCCCcHHHHHHHHhc
Q 046918          199 PIIISITG---MGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G---~gGvGKTTLa~~v~~  221 (251)
                      .++|+|++   -||+||||++-.+..
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~   59 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAY   59 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHH
Confidence            35677776   899999999887664

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=92.04  E-value=0.11  Score=41.00  Aligned_cols=26  Identities=38%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+.--||+.|.-|+||||+++.+-.
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999998653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=91.97  E-value=0.1  Score=41.55  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+|+|-|+.|+||||+++.+..
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~   36 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAE   36 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHH
Confidence            46999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=91.91  E-value=0.055  Score=50.37  Aligned_cols=20  Identities=35%  Similarity=0.702  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q 046918          200 IIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v  219 (251)
                      .+++|+|+.|.|||||++.+
T Consensus       349 e~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTT
T ss_pred             CEEEEEeeCCCCHHHHHHHH
Confidence            47999999999999999765

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=91.87  E-value=0.11  Score=44.46  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+++-+.|.||+||||+|-.+..
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~   40 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAV   40 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Confidence            368888999999999999987654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.75  E-value=0.1  Score=41.47  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++-|.|.+|+||||||..+..
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            56888999999999999987543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.70  E-value=0.11  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...+|.+.|+.|+||||+|+.+...
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~  395 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATM  395 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998763

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.69  E-value=0.15  Score=44.99  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+-|.|.+|+||||++..+...
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~   68 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEA   68 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            8899999999999999998874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=91.67  E-value=0.16  Score=46.45  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..+.+|+|+|..|+|||||...+....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            448899999999999999999998863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=91.55  E-value=0.1  Score=44.88  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      ....-|-|.|.||+||||+++.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            34566789999999999999984

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=91.55  E-value=0.1  Score=45.32  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..|+|+|..|+|||||.+.+.+.
T Consensus        23 ~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999875

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=91.34  E-value=0.023  Score=43.93  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||.+.+.++
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999988765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=91.32  E-value=0.092  Score=48.84  Aligned_cols=18  Identities=39%  Similarity=0.746  Sum_probs=16.5

Q ss_pred             CEEEEEEcCCCCcHHHHH
Q 046918          199 PIIISITGMGGIGKTTLA  216 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa  216 (251)
                      -.+++|+|+.|+|||||+
T Consensus        44 Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           44 GKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TSEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHh
Confidence            458999999999999996

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=91.31  E-value=0.11  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||.+.+..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            36899999999999999998764

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=91.31  E-value=0.12  Score=42.00  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=18.5

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHhc
Q 046918          199 PIIISIT-GMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~-G~gGvGKTTLa~~v~~  221 (251)
                      .++|+|+ +-||+||||+|-.+..
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~   41 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAV   41 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHH
Confidence            5688887 5689999999887654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.30  E-value=0.1  Score=52.16  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus      1059 Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A         1059 GQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp             SSEEEEECSSSTTHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999873

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=91.27  E-value=0.11  Score=45.84  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...|+|+|..|+|||||...+...
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            568999999999999999998774

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=91.17  E-value=0.13  Score=41.99  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..+.++|..|+|||||...+....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            568899999999999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=91.13  E-value=0.12  Score=43.14  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .--|.|+|..|+|||||+..+.++
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCChHHHHHHHHhC
Confidence            456889999999999999888764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=91.13  E-value=0.15  Score=43.58  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+..|+|+|..|+|||||...+...
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5779999999999999999999884

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=91.10  E-value=0.12  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||.+.+..
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            56999999999999999999764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=91.09  E-value=0.19  Score=42.46  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+-++|+.|+||||+|+.+.+
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~   46 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSR   46 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeEEEECCCCchHHHHHHHHHH
Confidence            45788999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=91.09  E-value=0.13  Score=41.60  Aligned_cols=24  Identities=33%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             CCEEEEEEcCC---------CCcHHHHHHHHhc
Q 046918          198 LPIIISITGMG---------GIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~g---------GvGKTTLa~~v~~  221 (251)
                      ..--|.|+|.+         |+|||||++.+.+
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            34568899999         9999999999887

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=91.04  E-value=0.11  Score=45.88  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCC----ceEEEEeCCCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFD----KKIWVCVSEPF  241 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd----~~~wV~Vs~~~  241 (251)
                      .-++|+|..|+|||||+..|.+....  +-|    .++++-+.+..
T Consensus       152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~  195 (465)
T 3vr4_D          152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITF  195 (465)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECH
T ss_pred             CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCc
Confidence            34689999999999999999885433  223    56777777654

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=90.99  E-value=0.13  Score=46.64  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=34.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC-CHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF-DDIRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~-~~~~i~~~  249 (251)
                      -.-++|+|..|+|||+|++.+.+..    +-+.++++-+.+.. .+.+++++
T Consensus       232 Gqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~  279 (600)
T 3vr4_A          232 GGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE  279 (600)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred             CCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence            5678999999999999999998742    34678888888663 34444443

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=90.77  E-value=0.21  Score=42.46  Aligned_cols=47  Identities=13%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~~  249 (251)
                      -.++-|.|..|+||||||..+..+....+  ..++|++.  .-+..++...
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~R   92 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALR   92 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHH
Confidence            45888999999999999999877532211  24455543  4445555443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.70  E-value=0.15  Score=39.10  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.-+.|.|..|+||||||.....
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45678999999999999988655

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=90.67  E-value=0.14  Score=46.27  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .--|+++|.+|+|||||.+.+.+..
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999988753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=90.63  E-value=0.2  Score=44.12  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...++..|.|.+|.||||+.+...+
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            5689999999999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=90.61  E-value=0.15  Score=47.40  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .....|+|+|..|+|||||+..+.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~   30 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALL   30 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCChHHHHHHHHH
Confidence            457899999999999999999987

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=90.57  E-value=0.2  Score=47.48  Aligned_cols=57  Identities=23%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.|.++.+++|.+.+.-.-.....-....    -...+-|-++|+.|.|||.||+.|.+.
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g----~~~~~gvLl~GPPGtGKT~lAkaiA~e  534 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFG----MTPSKGVLFYGPPGCGKTLLAKAIANE  534 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSC----CCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcC----CCCCceEEEecCCCCCchHHHHHHHHH
Confidence            577888888887766543211000000000    122344669999999999999999985

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=90.55  E-value=0.2  Score=43.43  Aligned_cols=42  Identities=21%  Similarity=0.061  Sum_probs=28.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccc-cCCCceEEEEeCCCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVS-AHFDKKIWVCVSEPF  241 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~-~~Fd~~~wV~Vs~~~  241 (251)
                      -.-++|+|..|+|||||++.|.+..... ..+.+ +.+-|.+..
T Consensus       175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~  217 (427)
T 3l0o_A          175 GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP  217 (427)
T ss_dssp             TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence            4578999999999999999888742211 12333 456666654

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=90.52  E-value=0.2  Score=41.06  Aligned_cols=25  Identities=32%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             CCCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGM-GGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~-gGvGKTTLa~~v~~  221 (251)
                      ...++|.|+|. ||+||||+|-.+..
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~  105 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAV  105 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHH
Confidence            44789999976 89999999887654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=90.50  E-value=0.29  Score=44.71  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++-|.|.+|+||||++..+...
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~  227 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADL  227 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47889999999999999998763

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=90.44  E-value=0.19  Score=42.65  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+++-+-|-||+||||+|-.+..
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~   38 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAI   38 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH
Confidence            67777889999999999887654

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=90.28  E-value=0.19  Score=41.76  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918          198 LPIIISITGM-GGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~-gGvGKTTLa~~v~~  221 (251)
                      ..++|.|.|. ||+||||+|-.+..
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~  127 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAA  127 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHH
Confidence            4689999986 89999999877665

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=90.24  E-value=0.14  Score=51.36  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|..|.|||||++.+..-
T Consensus       416 G~~~~ivG~sGsGKSTl~~ll~g~  439 (1284)
T 3g5u_A          416 GQTVALVGNSGCGKSTTVQLMQRL  439 (1284)
T ss_dssp             TCEEEEECCSSSSHHHHHHHTTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999763

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=90.13  E-value=0.42  Score=44.01  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHHHH
Q 046918          201 IISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRIAK  248 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i~~  248 (251)
                      +.-|.|++|.||||++..+...  ....-..++.++...+--+..+..
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn~A~~~l~~  242 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSNIAVDQLTE  242 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcHHHHHHHHH
Confidence            5678999999999987766542  111123567777666555444443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=90.06  E-value=0.17  Score=45.67  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ...+.|+|+|.+|+|||||+..+.
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHH
Confidence            347899999999999999999884

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=90.00  E-value=0.1  Score=45.25  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=11.8

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHh
Q 046918          197 QLPIIISIT-GMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~-G~gGvGKTTLa~~v~  220 (251)
                      ...++|+|+ |-||+||||++-.+-
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA  133 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLA  133 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHH
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHH
Confidence            457899999 779999999776654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=89.97  E-value=0.56  Score=38.63  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .-.++++|..|+|||||...+.+..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCc
Confidence            4578999999999999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=89.91  E-value=0.21  Score=45.42  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .....|+|+|..|+|||||.+.+....
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            347899999999999999999998763

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=89.79  E-value=0.23  Score=44.93  Aligned_cols=47  Identities=17%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD-IRIAKA  249 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~-~~i~~~  249 (251)
                      -.-++|+|..|+|||+|++.+.+.    .+-+.++++-+.+..+. .+++++
T Consensus       227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~  274 (588)
T 3mfy_A          227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE  274 (588)
T ss_dssp             TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred             CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence            557899999999999999998763    23467888889887643 344443

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=89.66  E-value=0.21  Score=43.05  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....|.|=|.-|+||||+++.+.+.
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~   72 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVAL   72 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999884

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=89.64  E-value=0.25  Score=41.49  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=17.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++-+-|-||+||||+|-.+-.
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~   36 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATAL   36 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHH
Confidence            4555558999999999987654

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=89.62  E-value=0.26  Score=41.91  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=17.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..++-+-|-||+||||+|-.+-.
T Consensus        26 ~~i~v~sgKGGvGKTTvA~~LA~   48 (349)
T 3ug7_A           26 TKYIMFGGKGGVGKTTMSAATGV   48 (349)
T ss_dssp             CEEEEEECSSSTTHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccHHHHHHHHHH
Confidence            44555558999999999877654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.62  E-value=0.16  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..++|+|..|.|||||++.+..-
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             CcEEEEEecCCCcHHHHHHHhccc
Confidence            458999999999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.59  E-value=0.11  Score=52.06  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -..|+|||..|.|||||++.+..
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            34799999999999999999987

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=89.52  E-value=0.18  Score=48.66  Aligned_cols=21  Identities=33%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      -.+++|+|+.|.|||||++.|
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999998

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=89.51  E-value=0.36  Score=42.57  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+.||+|+|..++||+||+..+..
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4599999999999999999999974

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=89.39  E-value=0.15  Score=43.34  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-|+|+|..++|||||...+.+.
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcC
Confidence            35899999999999999998875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=89.33  E-value=0.22  Score=43.90  Aligned_cols=39  Identities=15%  Similarity=0.065  Sum_probs=27.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      -.++-|.|.+|+||||||..+..+...... ..++|++.-
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE  238 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE  238 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC
Confidence            468899999999999999998775322111 245665543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=89.31  E-value=0.15  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      -.+++|+|+.|.|||||.+.|.
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHH
Confidence            5699999999999999999875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=89.21  E-value=0.25  Score=39.30  Aligned_cols=23  Identities=30%  Similarity=0.023  Sum_probs=19.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++-|+|..|+||||++-.+.+
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~   34 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLH   34 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEECCCCCcHHHHHHHHHH
Confidence            57889999999999998876655

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=89.09  E-value=0.26  Score=41.94  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+.-|+|+|..|+|||||...+...
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999998775

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=88.81  E-value=0.22  Score=44.97  Aligned_cols=39  Identities=21%  Similarity=0.117  Sum_probs=30.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPF  241 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~  241 (251)
                      -.-++|+|..|+|||+|++.+.+..    +-+.++++-+.+..
T Consensus       221 Gqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~  259 (578)
T 3gqb_A          221 GGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERG  259 (578)
T ss_dssp             TCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred             CCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence            4578999999999999999998742    33677788887653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=88.79  E-value=0.57  Score=41.27  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ....-|+++|.+|+|||||...+...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC
Confidence            44678899999999999999998865

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=88.79  E-value=0.24  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      -.+++|+|+.|.|||||++.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            479999999999999999998

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=88.70  E-value=0.48  Score=42.36  Aligned_cols=46  Identities=24%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD-DIRIAK  248 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~-~~~i~~  248 (251)
                      -.-++|+|..|+|||+| +..|.|..    .-|. ++++-+.+..+ +.++++
T Consensus       175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~  223 (515)
T 2r9v_A          175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIID  223 (515)
T ss_dssp             TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHH
Confidence            34688999999999999 56888853    3563 57888887663 334433

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=88.69  E-value=0.32  Score=42.85  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=27.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      -.++-|.|.+|+||||||..+..+.-.++  ..++|++.-
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE  234 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE  234 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC
Confidence            46889999999999999999887533321  245665543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=88.65  E-value=0.24  Score=42.30  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=17.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      ..-|-+.|.||+||||+++++
T Consensus         9 ~~k~lllG~~~sGKsT~~kq~   29 (354)
T 2xtz_A            9 IRKLLLLGAGESGKSTIFKQI   29 (354)
T ss_dssp             EEEEEEECSTTSSHHHHHHHH
T ss_pred             ceeEEEECCCCCcHHHHHHHH
Confidence            445789999999999999873

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=88.51  E-value=0.26  Score=44.49  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....|+|+|..|+|||||+..+..
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHh
Confidence            378899999999999999999875

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=88.38  E-value=0.45  Score=42.48  Aligned_cols=40  Identities=28%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC
Q 046918          199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD  242 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~  242 (251)
                      -.-++|+|..|+|||+| +..|.|..    +-|. ++++-|.+..+
T Consensus       162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~  203 (502)
T 2qe7_A          162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQS  203 (502)
T ss_dssp             TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcch
Confidence            44579999999999999 56888853    3463 57888887653

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=88.28  E-value=0.5  Score=37.49  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=16.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ..+.|.|..|+||||+.....
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            378899999999998665543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=88.28  E-value=0.35  Score=41.46  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .++..|+|..|.|||||.-.||
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999987

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=88.24  E-value=0.29  Score=44.64  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=18.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+++-+.|.||+||||+|-.+.
T Consensus         8 ~~i~~~sgkGGvGKTT~a~~lA   29 (589)
T 1ihu_A            8 PPYLFFTGKGGVGKTSISCATA   29 (589)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCcCHHHHHHHHHH
Confidence            5678888999999999987753

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=88.18  E-value=0.3  Score=45.69  Aligned_cols=25  Identities=28%  Similarity=0.114  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...+.|+|+|.+|+|||||+..+..
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999999999853

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=88.14  E-value=0.14  Score=48.75  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHH-Hh
Q 046918          200 IIISITGMGGIGKTTLARL-IF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~-v~  220 (251)
                      .+++|+|..|+|||||++. ++
T Consensus       524 eiv~I~G~nGSGKSTLl~~~L~  545 (842)
T 2vf7_A          524 VMTSVTGVSGSGKSTLVSQALV  545 (842)
T ss_dssp             SEEEEECCTTSSHHHHCCCCCH
T ss_pred             CEEEEEcCCCcCHHHHHHHHHH
Confidence            3899999999999999996 44

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=88.13  E-value=0.8  Score=39.20  Aligned_cols=46  Identities=28%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|......++...+..-.              ..... +-|.|..|+||+++|+.+++.
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a--------------~~~~~-vli~GesGtGKe~lAr~ih~~  175 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIA--------------KSKAP-VLITGESGTGKEIVARLIHRY  175 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHH--------------TSCSC-EEEECCTTSSHHHHHHHHHHH
T ss_pred             cccccchHHHHHHhhhhhhh--------------ccchh-heEEeCCCchHHHHHHHHHHh
Confidence            57787766666555443221              11133 448899999999999999974

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=88.12  E-value=0.29  Score=42.47  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=21.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ...-.|+++|..|+|||||.+.+..
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~   30 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456789999999999999999976

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=88.12  E-value=0.28  Score=42.28  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.-+.|+|+.|.|||||++.+...
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHH
Confidence            345789999999999999998763

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=87.99  E-value=0.35  Score=40.73  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=17.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..++-+-|-||+||||+|-.+..
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~   41 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAI   41 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHH
Confidence            44555669999999999877654

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=87.89  E-value=0.38  Score=39.76  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             CCCEEEEEEcC-CCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGM-GGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~-gGvGKTTLa~~v~~  221 (251)
                      ...++|.|+|. ||+||||+|-.+..
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~  115 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAA  115 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHH
Confidence            34789999976 79999999887654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=87.86  E-value=0.14  Score=49.46  Aligned_cols=20  Identities=35%  Similarity=0.702  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q 046918          200 IIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v  219 (251)
                      .+++|+|..|.|||||++.+
T Consensus       651 eiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          651 TFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SEEECCBCTTSSHHHHHTTT
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            37999999999999999985

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=87.76  E-value=0.46  Score=42.51  Aligned_cols=50  Identities=20%  Similarity=0.187  Sum_probs=34.0

Q ss_pred             CEEEEEEcCCCCcHHHH-HHHHhcCccc----ccCCC-ceEEEEeCCCCC-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTL-ARLIFNDNVV----SAHFD-KKIWVCVSEPFD-DIRIAK  248 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v----~~~Fd-~~~wV~Vs~~~~-~~~i~~  248 (251)
                      -.-++|+|..|+|||+| +..|.|....    .++-| .++++-+.+..+ +.++.+
T Consensus       162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~  218 (510)
T 2ck3_A          162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVK  218 (510)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHH
T ss_pred             CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHH
Confidence            44678999999999999 5678875432    12355 478888887663 334443

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=87.48  E-value=0.23  Score=44.06  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccC--CCceEEEEeCCCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAH--FDKKIWVCVSEPF  241 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~--Fd~~~wV~Vs~~~  241 (251)
                      -.-++|+|..|+|||+|++.|.++....+.  =+.++++-+.+..
T Consensus       152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~  196 (469)
T 2c61_A          152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN  196 (469)
T ss_dssp             TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence            345678899999999999999886543221  1356777777655

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=87.45  E-value=0.29  Score=43.44  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|+|+|..|+|||||...+.+.
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            3899999999999999998764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=87.17  E-value=0.31  Score=44.75  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++-|.|.+|+||||++..+..
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~  186 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLA  186 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHH
Confidence            5788999999999999887654

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=86.91  E-value=0.49  Score=42.32  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CEEEEEEcCCCCcHHHH-HHHHhcCcccccCCCc-eEEEEeCCCCC-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTL-ARLIFNDNVVSAHFDK-KIWVCVSEPFD-DIRIAK  248 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTL-a~~v~~d~~v~~~Fd~-~~wV~Vs~~~~-~~~i~~  248 (251)
                      -.-++|+|..|+|||+| +..|.|..    .-|. ++++-+.+..+ +.++.+
T Consensus       163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~  211 (507)
T 1fx0_A          163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVT  211 (507)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHH
T ss_pred             CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHH
Confidence            34578999999999999 56888853    2453 57888887663 334443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=86.89  E-value=0.38  Score=42.14  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=20.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....-|+|+|..|+|||||+..+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~   46 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLH   46 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHh
Confidence            3356789999999999999988754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=86.66  E-value=0.38  Score=40.37  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .-+.|.|..|+||||||.....
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHh
Confidence            5688999999999999998775

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=86.60  E-value=0.33  Score=45.31  Aligned_cols=25  Identities=28%  Similarity=0.178  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+...|+|+|..|+|||||+..+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999999999873

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=86.40  E-value=0.25  Score=43.60  Aligned_cols=43  Identities=12%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccc--------cCCC-ceEEEEeCCCC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVS--------AHFD-KKIWVCVSEPF  241 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~--------~~Fd-~~~wV~Vs~~~  241 (251)
                      -.-++|+|..|+|||||+..|.+.....        ++=+ .++++-+.+..
T Consensus       147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~  198 (464)
T 3gqb_B          147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQ  198 (464)
T ss_dssp             TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECH
T ss_pred             CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCch
Confidence            3456889999999999999998864431        1112 55677777654

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=86.39  E-value=0.48  Score=40.41  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=16.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..++-+-|-||+||||+|-.+--
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~   40 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAI   40 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Confidence            34444559999999998877554

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=86.39  E-value=0.57  Score=40.39  Aligned_cols=46  Identities=26%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|......++.+.+..-.              ..+..| -|.|..|+|||++|+.++..
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a--------------~~~~~v-li~Ge~GtGK~~lAr~ih~~  183 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKIS--------------CAECPV-LITGESGVGKEVVARLIHKL  183 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHT--------------TCCSCE-EEECSTTSSHHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhc--------------CCCCCe-EEecCCCcCHHHHHHHHHHh
Confidence            46776666666666554322              123445 79999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=86.14  E-value=0.53  Score=48.22  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCH
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDD  243 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~  243 (251)
                      +++-|+|+.|+|||+||+.+.+  +-...=...+||.+...++.
T Consensus      1083 ~~~l~~G~~g~GKT~la~~~~~--~~~~~g~~~~fi~~~~~~~~ 1124 (1706)
T 3cmw_A         1083 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDP 1124 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCH
T ss_pred             CEEEEEcCCCCChHHHHHHHHH--HhhhcCCceeEEEcccchHH

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=86.12  E-value=0.32  Score=43.33  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |.|+|..|+|||||...+.+.
T Consensus       236 V~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          236 TVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEECCTTSSHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998775

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=86.08  E-value=0.38  Score=40.88  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHH-HHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLA-RLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa-~~v~~d~  223 (251)
                      .+...|.|=|.-|+||||++ +.+.+..
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l   37 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFA   37 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            34678888999999999999 9998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-11

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND 222
              RE+   +V   L    +  +                + + G  G GK+ +A    + 
Sbjct: 22  CYIREYHVDRVIKKLDEMCDLDS--------------FFLFLHGRAGSGKSVIASQALSK 67

Query: 223 N--VVSAHFDKKIWVCVSEPFDDIRIAKAIL 251
           +  ++  ++D  +W+  S             
Sbjct: 68  SDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.31
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.77
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.74
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.59
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.58
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.58
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.54
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.53
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.52
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.49
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.38
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.23
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.18
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.16
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.89
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.62
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.61
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.6
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.57
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.57
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.54
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.5
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.47
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.41
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.41
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.41
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.38
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.36
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.33
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.3
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.3
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.29
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.28
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.28
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.28
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.25
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.25
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.25
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.24
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.14
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.11
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.07
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.05
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.99
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.99
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.88
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.85
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.77
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.75
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.74
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.73
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.72
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.71
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.69
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.65
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.62
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.6
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.54
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.45
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.44
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.44
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.4
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.27
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.23
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.19
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.14
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.89
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.72
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.53
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.45
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.42
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.26
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.1
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.97
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.89
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.88
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.87
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.82
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.55
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.48
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.4
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.11
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.08
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.06
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.03
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.9
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.88
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.86
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.64
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.94
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.72
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.2
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.97
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.87
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.77
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.89
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.78
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.76
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.59
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.29
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	88.07
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.64
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.45
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.24
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	85.95
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.62
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.29
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.39
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	83.21
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.77
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.62
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	80.55
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.4
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.28

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.71  E-value=5.3e-18  Score=140.58  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=66.9

Q ss_pred             cCCCcceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcc--cccCCCceEE
Q 046918          157 LDESYEVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNV--VSAHFDKKIW  234 (251)
Q Consensus       157 ~~~~~~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~--v~~~Fd~~~w  234 (251)
                      +.++ .++||+.++++|+++|....              +....+|+|+||||+||||||+.+|++..  +..+|++++|
T Consensus        17 p~~~-~~~gR~~~~~~i~~~L~~~~--------------~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~W   81 (277)
T d2a5yb3          17 PKQM-TCYIREYHVDRVIKKLDEMC--------------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW   81 (277)
T ss_dssp             BCCC-CSCCCHHHHHHHHHHHHHHT--------------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE
T ss_pred             CCCC-ceeCcHHHHHHHHHHHHhcc--------------CCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEE
Confidence            3455 78999999999999997644              24588999999999999999999998643  6778999999


Q ss_pred             EEeCCCCCHHHHHHHh
Q 046918          235 VCVSEPFDDIRIAKAI  250 (251)
Q Consensus       235 V~Vs~~~~~~~i~~~I  250 (251)
                      |++|+.++...+...+
T Consensus        82 v~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          82 LKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             EECCCCSTTHHHHHHH
T ss_pred             EEecCCCCHHHHHHHH
Confidence            9999999988776543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.31  E-value=8.4e-07  Score=70.82  Aligned_cols=71  Identities=15%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             ceeccchhHHHHHHHhcCC---CCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCc-eEEEEe
Q 046918          162 EVRGREHLQIKVANLLMSG---SESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDK-KIWVCV  237 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~-~~wV~V  237 (251)
                      .++||+.+.++|.++|...   .              ....+.+-|+|+.|+||||+|+.+.+.  ....+.. .+|+..
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~--------------~~~~~~lll~GppGtGKT~l~~~l~~~--l~~~~~~~~~~~~~   80 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNP--------------GHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYING   80 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHST--------------TSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEET
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCC--------------CCCCCceEEECCCCCCHHHHHHHHHHH--HhcccCCcEEEecc
Confidence            5899999999999988542   2              234678889999999999999999984  3333332 356665


Q ss_pred             CCCCCHHHHHH
Q 046918          238 SEPFDDIRIAK  248 (251)
Q Consensus       238 s~~~~~~~i~~  248 (251)
                      ........+..
T Consensus        81 ~~~~~~~~~~~   91 (276)
T d1fnna2          81 FIYRNFTAIIG   91 (276)
T ss_dssp             TTCCSHHHHHH
T ss_pred             hhhhhhhhhhh
Confidence            55555554443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.97  E-value=1.5e-06  Score=69.31  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=33.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++||+.+.+++.+.    .                 -+++.|+|++|+|||+|++.+.++
T Consensus        13 ~f~GR~~el~~l~~~----~-----------------~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          13 DFFDREKEIEKLKGL----R-----------------APITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             GSCCCHHHHHHHHHT----C-----------------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHhc----c-----------------CCEEEEEcCCCCcHHHHHHHHHHH
Confidence            799999999988762    2                 357889999999999999998774

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.77  E-value=4e-06  Score=67.06  Aligned_cols=53  Identities=30%  Similarity=0.396  Sum_probs=37.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.||+.+.++|.++|...-.+      +..  +.....++-++|+.|+||||+++.+.+.
T Consensus        17 ~~~~Re~e~~~l~~~l~~~~~~------~~~--~~~~~~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          17 ELRVRRGEAEALARIYLNRLLS------GAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHT------SSC--BCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHc------CCC--CCCcceEEEeECCCCCCHHHHHHHHHHH
Confidence            6899999999998876321100      000  0122445677899999999999999985

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=2.6e-05  Score=59.39  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=41.2

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC---ccc-ccCCCceEEE
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND---NVV-SAHFDKKIWV  235 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d---~~v-~~~Fd~~~wV  235 (251)
                      .++||+.+.++++..|....                 -.-+-++|.+|+|||+++..+...   ..+ ....+.++|.
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~-----------------k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~   83 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             CCcCcHHHHHHHHHHHhccC-----------------CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            57999999999999998655                 234569999999999997665542   122 2334566664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.4e-05  Score=61.02  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+..++....                 .+.+-++|+.|+|||||++.+.+.
T Consensus        13 diig~~~~~~~l~~~i~~~~-----------------~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          13 EVTAQDHAVTVLKKTLKSAN-----------------LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCCSCCTTHHHHHHHTTCTT-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHcCC-----------------CCeEEEECCCCCChHHHHHHHHHH
Confidence            68999999999999986544                 333679999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=2.9e-05  Score=60.39  Aligned_cols=44  Identities=25%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+|+....                 ..-+-++|+.|+||||+|+.+.+.
T Consensus        16 d~ig~~~~~~~L~~~~~~~~-----------------~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          16 DIVGNKETIDRLQQIAKDGN-----------------MPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             GCCSCTHHHHHHHHHHHSCC-----------------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHcCC-----------------CCeEEEECCCCCCchhhHHHHHHH
Confidence            68999999999999997655                 333568999999999999988763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.58  E-value=2.5e-05  Score=60.96  Aligned_cols=43  Identities=28%  Similarity=0.447  Sum_probs=37.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+.-++.+..|+....                 .+-+-++|+.|+||||||+.+.+
T Consensus        25 diig~~~~~~~l~~~i~~~~-----------------~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          25 DIVGQEHIVKRLKHYVKTGS-----------------MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC-----------------CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHcCC-----------------CCeEEEECCCCCcHHHHHHHHHH
Confidence            68999999999999997654                 44467999999999999999877

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=8.9e-05  Score=58.31  Aligned_cols=74  Identities=23%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             ceeccchhHHHHHHHhcCCC---CCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          162 EVRGREHLQIKVANLLMSGS---ESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      +++|.+..+++|.+||..-.   .......+.   .+....+.+-++|+.|+||||+|+.+.+.-.     -...++..+
T Consensus        15 dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~---~~~~~~~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~~   86 (253)
T d1sxja2          15 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGK---DGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNAS   86 (253)
T ss_dssp             GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT---TSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTT
T ss_pred             HhcCCHHHHHHHHHHHHhhhhcchhhhhhhcc---cCCCCCceEEEECCCCCCHHHHHHHHHHHHH-----hhhhccccc
Confidence            68999999999999885410   000000000   0023456788999999999999999998421     123455555


Q ss_pred             CCCCH
Q 046918          239 EPFDD  243 (251)
Q Consensus       239 ~~~~~  243 (251)
                      ...+.
T Consensus        87 ~~~~~   91 (253)
T d1sxja2          87 DVRSK   91 (253)
T ss_dssp             SCCCH
T ss_pred             cchhh
Confidence            54443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=3.2e-05  Score=60.11  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.+.+|+..+.                 +..+-++|+.|+||||||+.+.+.
T Consensus        15 divg~~~~~~~L~~~i~~~~-----------------~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          15 EVYGQNEVITTVRKFVDEGK-----------------LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC-----------------CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHcCC-----------------CCeEEEECCCCCChhHHHHHHHHH
Confidence            68999999999999997654                 323559999999999999999874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=3.9e-05  Score=64.79  Aligned_cols=57  Identities=25%  Similarity=0.344  Sum_probs=41.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHH----HHHhcCcccccCCCceEEE
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLA----RLIFNDNVVSAHFDKKIWV  235 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa----~~v~~d~~v~~~Fd~~~wV  235 (251)
                      .++||+.+.+++++.|....              ..+   +-+||.+|||||+|+    +.|.+..--....+.++|.
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~--------------k~n---~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~   83 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRT--------------KNN---PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS   83 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSS--------------CCC---CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             CCcCcHHHHHHHHHHHhcCC--------------CCC---CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            47999999999999998655              122   256799999999966    5566653223345667765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.53  E-value=2.5e-05  Score=61.27  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++-++++..++......            ...++-+-++|+.|+||||||+.+.+.
T Consensus        10 divGq~~~~~~L~~~i~~~~~~------------~~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKAR------------KEPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTTS------------SSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            6899998888888877532200            122445568999999999999999884

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.52  E-value=7.9e-05  Score=55.99  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+.-||+|.|..|+||||||+.+...
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999873

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=2.8e-05  Score=61.21  Aligned_cols=45  Identities=18%  Similarity=0.129  Sum_probs=34.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++..+.|..++....                ...-+-++|+.|+||||+|+.+.+.
T Consensus        12 diig~~~~~~~L~~~~~~~~----------------~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          12 ALSHNEELTNFLKSLSDQPR----------------DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             GCCSCHHHHHHHHTTTTCTT----------------CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HccCcHHHHHHHHHHHHcCC----------------CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            68998887777777665432                2333569999999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=8.5e-05  Score=59.43  Aligned_cols=43  Identities=23%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++||+.+.++++..|....                 -.-+-+||.+|+|||+|+..+..
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~-----------------k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----------------SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHhcCc-----------------cCCcEEECCCCCcHHHHHHHHHH
Confidence            47999999999999997654                 23445999999999988777655

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.39  E-value=4.5e-05  Score=55.15  Aligned_cols=22  Identities=41%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ++|.|+|+.|+||||||+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=7e-05  Score=58.52  Aligned_cols=49  Identities=29%  Similarity=0.404  Sum_probs=36.5

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+.-++.+..++......            ....+-+-++|+.|+||||||+.+.+.
T Consensus        10 divGqe~~~~~l~~~i~~~~~~------------~~~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          10 EFIGQENVKKKLSLALEAAKMR------------GEVLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHH------------TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHhc------------CCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999998887532100            122344669999999999999999883

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.23  E-value=0.00018  Score=56.89  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++.|-++|+.|+||||||+.+.+.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45778889999999999999999983

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00012  Score=55.31  Aligned_cols=26  Identities=27%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +..+||.|.|+.|+||||+|+.+...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            55999999999999999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0001  Score=55.29  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .-.+|-++|+.|+||||+|+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999999976

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00015  Score=53.19  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ...++|.|.|+.|+||||+|+.+...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999997654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.0003  Score=52.31  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....+|-++|+.|+||||+|+....
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5578999999999999999998865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0012  Score=53.55  Aligned_cols=26  Identities=42%  Similarity=0.677  Sum_probs=23.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....-||||.|..|+||||+|+.+..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            46688999999999999999999876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.62  E-value=0.00063  Score=52.11  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....||-+.|+.|+||||||+.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00096  Score=52.78  Aligned_cols=53  Identities=23%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             ceeccchhHHHHHHHh----cCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLL----MSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.++.+++|.+.+    ...+.  .. ..     +-...+-|-++|+.|+|||+||+.+.+.
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~--~~-~~-----g~~~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPAL--FK-AI-----GVKPPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHH--HH-HC-----CCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHH--HH-hC-----CCCCCceeEEecCCCCCchHHHHHHHHH
Confidence            6899999988887763    32110  00 00     0122456789999999999999999983

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.60  E-value=0.00047  Score=52.55  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||.+.+..-
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            458999999999999999999873

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.57  E-value=0.00059  Score=51.28  Aligned_cols=27  Identities=30%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ....+|+|-|.-|+||||+++.+.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00088  Score=53.01  Aligned_cols=53  Identities=28%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             ceeccchhHHHHHH---HhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVAN---LLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~---~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.++.+++|.+   ++...+-  ....      +....+-+-++|+.|+|||+||+.+.+.
T Consensus        13 Di~Gl~~~k~~l~e~v~~~~~~~~--~~~~------g~~~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          13 DVAGCDEAKEEVAELVEYLREPSR--FQKL------GGKIPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             GSCSCHHHHHHTHHHHHHHHCGGG--C-----------CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHHHHHCHHH--HHHc------CCCCCCeEEeeCCCCCCccHHHHHHHHH
Confidence            68999888877754   4432210  0000      0123456779999999999999999984

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00091  Score=52.15  Aligned_cols=44  Identities=36%  Similarity=0.558  Sum_probs=36.1

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++|.+..++.+..++..+.                -...+-++|+.|+||||+|+.+.+
T Consensus        13 dlig~~~~~~~L~~~i~~~~----------------~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          13 DVVGQEHVLTALANGLSLGR----------------IHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHTTC----------------CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCcHHHHHHHHHH
Confidence            68999999999999987644                134566999999999999999755

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0017  Score=52.95  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=36.9

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-++.+...+.....+      -.+  ......++-.+|+.|+|||.||+.+..
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~------l~~--~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAG------LGH--EHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTT------CSC--TTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eecChHHHHHHHHHHHHHHHcc------CCC--CCCCceEEEEECCCcchhHHHHHHHHh
Confidence            6899999998887665311000      000  034577899999999999999999876

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.00086  Score=54.53  Aligned_cols=54  Identities=24%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             ceeccchhHHHHHHHhcC----CCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLMS----GSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++|.++-++.+...+..    ..-  ..+  . ..  ....+.+-++|+.|+|||.||+.+.+.
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~--~~~--~-~~--~~~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQL--QEP--L-RH--EVTPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSS--CHH--H-HH--HCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHHHhcc--CCC--C-cc--CCCCceEEEECCCCCCHHHHHHHHhhc
Confidence            588998888777654411    000  000  0 00  112466679999999999999999873

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.47  E-value=0.0015  Score=50.03  Aligned_cols=38  Identities=26%  Similarity=0.173  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeC
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVS  238 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs  238 (251)
                      ...+-|||..|+|||.|++.+++.  .......+++++.+
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~--~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD   73 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHH--hccCccceEEechH
Confidence            334679999999999999999995  33344455565543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.00083  Score=52.24  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCcchhhHhccCC
Confidence            458999999999999999998873

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.41  E-value=0.00085  Score=52.50  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.++.-
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            459999999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.41  E-value=0.0013  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++-|-++|+.|+|||+||+.|.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            566779999999999999999984

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0009  Score=52.08  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            459999999999999999999763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.00091  Score=52.33  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.++.-
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            459999999999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.002  Score=50.57  Aligned_cols=53  Identities=28%  Similarity=0.465  Sum_probs=33.7

Q ss_pred             ceeccchhHHHHHH---HhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVAN---LLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~---~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +++|.+..++.|.+   .+...+.   -...|     ....+-|-++|+.|+|||+||+.+.+.
T Consensus        10 di~G~~~~k~~l~~~i~~l~~~~~---~~~~g-----~~~~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          10 DVAGAEEAKEELKEIVEFLKNPSR---FHEMG-----ARIPKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCHHH---HHHTT-----CCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHHHHCHHH---HHHcC-----CCCCceEEEecCCCCChhHHHHHHHHH
Confidence            68899887766544   3332110   00000     122456789999999999999999974

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0013  Score=49.38  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+++.|+|+|..|+|||||...+.+.
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            355778999999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.0011  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..=
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            458999999999999999998873

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=52.35  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|..|+|||||++.+..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999987

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.29  E-value=0.001  Score=52.51  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            45899999999999999999976

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.28  E-value=0.0023  Score=52.31  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+..+|+|.|++|+|||||.-.+..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            5689999999999999999988775

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.28  E-value=0.0011  Score=52.56  Aligned_cols=23  Identities=43%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||++.+..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            45999999999999999999987

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0011  Score=51.87  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -..++|+|..|.|||||++.+..-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            458999999999999999999873

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.25  E-value=0.0012  Score=51.69  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -..++|+|+.|.|||||++.+..
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999999876

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0011  Score=53.13  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            568999999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.0011  Score=49.72  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++|-|.|++|+||||+|+.+...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998664

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.0012  Score=51.57  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+++|+|+.|+|||||++.+..-
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcC
Confidence            37889999999999999999884

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=47.53  Aligned_cols=25  Identities=32%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .++ |.|+|..|+|||||.+.+.+++
T Consensus         5 e~k-I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           5 EMR-ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             CEE-EEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceE-EEEECCCCCCHHHHHHHHhCCC
Confidence            355 6699999999999999987764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.0014  Score=51.19  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||.+.+..-
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.11  E-value=0.0015  Score=51.15  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||.+.+..-
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            459999999999999999999884

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.07  E-value=0.0024  Score=46.69  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+ |.++|.+|+|||||...+..+
T Consensus        13 ~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             CCE-EEEECCCCCCHHHHHHHHhCC
Confidence            344 669999999999999998775

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.05  E-value=0.0012  Score=51.15  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=21.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|+|||||++.+..-
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            458999999999999999999873

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.99  E-value=0.0018  Score=51.08  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -.+++|+|+.|.|||||++.+..-
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCC
Confidence            458999999999999999999884

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0036  Score=51.12  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+..+|+|.|.+|+|||||...+..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHH
Confidence            5589999999999999999998765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.93  E-value=0.0038  Score=47.59  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=20.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+.+||.++|+.|+||||.+-++..
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4478999999999999987776654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.88  E-value=0.003  Score=46.62  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++|+ ++|..|+|||||.+.+.++
T Consensus        16 k~~KI~-lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          16 KELRIL-ILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SCEEEE-EEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEE-EECCCCCCHHHHHHHHhcC
Confidence            456655 9999999999999998765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0042  Score=49.02  Aligned_cols=23  Identities=43%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHh
Q 046918          198 LPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .-+||.+.|-||+||||++-.+-
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            38999999999999999755543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0015  Score=51.84  Aligned_cols=53  Identities=23%  Similarity=0.253  Sum_probs=34.0

Q ss_pred             ceeccchhHHHHHHHhc----CCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          162 EVRGREHLQIKVANLLM----SGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++.|.++.+++|.+.+.    ..+.   ....     +-...+-|-++|+.|+|||+||+.+.+.
T Consensus         8 di~G~~~~k~~l~~~i~~~l~~~~~---~~~~-----g~~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3           8 DIGGLEDVKRELQELVQYPVEHPDK---FLKF-----GMTPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             SCSSSSCCCCHHHHHTHHHHHCHHH---HHHC-----CCCCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHH---HHhC-----CCCCCCeEEEECCCCCcchhHHHHHHHH
Confidence            57888877766666542    1100   0000     0123455779999999999999999884

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0031  Score=50.46  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ..+-+|||-|..|+|||||+..+..
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHH
Confidence            4577999999999999999998866

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0019  Score=50.16  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999887

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.75  E-value=0.003  Score=48.30  Aligned_cols=27  Identities=30%  Similarity=0.475  Sum_probs=18.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+...||.++|+.|+||||.+-++...
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999876666543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0057  Score=46.72  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+.||.++|+.|+||||.+-++...
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            55889999999999999977766653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.73  E-value=0.0016  Score=50.95  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.+++|+|+.|+|||||++.+..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            45999999999999999999887

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0069  Score=46.29  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCC----CceEEEEeCCCCCHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHF----DKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~F----d~~~wV~Vs~~~~~~~i  246 (251)
                      .-+++-|.|.+|+|||||+-.+..+......+    ...+|+.....++...+
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   85 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL   85 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHH
Confidence            36799999999999999998776543222212    35678887777665443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.004  Score=47.57  Aligned_cols=24  Identities=33%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ....||.++|+.|+||||.+-++.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            558999999999999998766554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.71  E-value=0.0058  Score=44.48  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++ |.|+|.+|+|||||...+-++
T Consensus        16 ~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             EE-EEEECCCCCCHHHHHHHHhcC
Confidence            55 559999999999999998775

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.69  E-value=0.0056  Score=47.10  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP  240 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~  240 (251)
                      ..-.++-|+|..|+|||+|+..+..+  ..++...++|++.-.+
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~--~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEES   65 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSSC
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH--HHHhccccceeeccCC
Confidence            34679999999999999999998884  4556677888876543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.65  E-value=0.0064  Score=49.35  Aligned_cols=52  Identities=23%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .++|.+.-++.|.+.+......      ..+  +.....++..+|+.|+|||.||+.+..
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~------l~~--~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAG------LKD--PNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG------CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcC------CCC--CCCCceEEEEECCCcchHHHHHHHHHH
Confidence            6899998888886655321100      000  034467899999999999999998765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.65  E-value=0.0019  Score=50.99  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -..++|+|..|+|||||++.+..
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            45899999999999999999875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.62  E-value=0.0061  Score=44.44  Aligned_cols=25  Identities=32%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..++ |.++|.+|+|||||.+.+.++
T Consensus        15 ~~~k-I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          15 QEVR-ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SCEE-EEEEESTTSSHHHHHHHHCCS
T ss_pred             CEEE-EEEECCCCCCHHHHHHHHhcC
Confidence            3454 679999999999999998775

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.60  E-value=0.0032  Score=46.10  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..++| .++|.+|+|||||.+.+.++.
T Consensus        11 k~~kI-vlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          11 KEMRI-LMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             CCEEE-EEEEETTSSHHHHHHHTTCCC
T ss_pred             CeEEE-EEECCCCCCHHHHHHHHhcCC
Confidence            44774 489999999999999998763

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.023  Score=43.42  Aligned_cols=49  Identities=20%  Similarity=0.114  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCc----ccccCCCceEEEEeCCCCCHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDN----VVSAHFDKKIWVCVSEPFDDIR  245 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~----~v~~~Fd~~~wV~Vs~~~~~~~  245 (251)
                      ..-+++-|+|..|+|||+||.++..+.    .....+..+.|+.....++...
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            447799999999999999999876432    1223456778888877776543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.0038  Score=45.52  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.++|..|+|||||...+.++
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3779999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0038  Score=45.59  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|.+|+|||||++.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999987764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0043  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCc
Q 046918          202 ISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      |.|+|..|+|||||++.+.++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5588999999999999987653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0039  Score=45.24  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|.+|+|||||++.+.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999887654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0044  Score=49.20  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=17.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v  219 (251)
                      ..++|-+.|-||+||||+|-.+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHH
Confidence            4778889999999999955543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.27  E-value=0.007  Score=50.09  Aligned_cols=26  Identities=27%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.-+.+-++|++|+|||++|+.+.+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            34568899999999999999999884

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.23  E-value=0.015  Score=44.67  Aligned_cols=50  Identities=26%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCccc----ccCCCceEEEEeCCCCCHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVV----SAHFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v----~~~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      +.-+++-|+|.+|+|||||+.++..+...    .......+|+.....++...+
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            34679999999999999999987653211    122356788888777765543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0056  Score=44.37  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|..|+|||||++...++
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999986554

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0053  Score=44.92  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++ |.|+|..|+|||||++.+.++
T Consensus         7 ~K-v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HK-LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EE-EEEEECTTSSHHHHHHHHHHS
T ss_pred             EE-EEEECCCCcCHHHHHHHHHhC
Confidence            45 559999999999999987664

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0055  Score=44.61  Aligned_cols=22  Identities=18%  Similarity=0.370  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|..|+|||||++.+.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999987754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0054  Score=44.70  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++ |.|+|..|+|||||.+...++
T Consensus         6 ~K-i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YR-LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EE-EEEEECTTSSHHHHHHHHHHS
T ss_pred             eE-EEEECCCCCCHHHHHHHHHhC
Confidence            44 778999999999999886654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.006  Score=44.61  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          196 TQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       196 ~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++..-|+|+|..++|||||.+.+...
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            355788999999999999999998664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.89  E-value=0.0053  Score=49.98  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             ceeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          162 EVRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       162 ~~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .++|.+.-+..++-.+....                 ..=+-+.|..|+||||||+.+-
T Consensus         8 ~I~Gq~~~kral~laa~~~~-----------------~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVDPG-----------------IGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHCGG-----------------GCCEEEECCGGGCTTHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHhccC-----------------CCeEEEECCCCccHHHHHHHHH
Confidence            68999877665543333211                 1236789999999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.82  E-value=0.0084  Score=43.57  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +--|.|+|..|+|||||++.+.++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            445779999999999999987554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0077  Score=44.13  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ++ |.++|..|+|||||.+.+-++
T Consensus         8 iK-i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           8 LK-ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EE-EEEECSTTSSHHHHHHHHHHS
T ss_pred             eE-EEEECCCCcCHHHHHHHHHhC
Confidence            45 669999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0078  Score=44.51  Aligned_cols=25  Identities=36%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .+--|.|+|..|+|||+|.+...++
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhC
Confidence            3456889999999999999886665

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.72  E-value=0.0092  Score=43.85  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +.++ |+|+|..|+|||||...+.+.
T Consensus         7 ~~~k-V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIK-VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEE-EEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCE-EEEECCCCCCHHHHHHHHHCC
Confidence            3355 799999999999999888764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0099  Score=43.15  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|.|+|.+|+|||+|++...++
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999986553

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0098  Score=43.35  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      +--|.++|..|+|||||++.+.++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            444679999999999999776543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.53  E-value=0.015  Score=42.07  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      .-.||.+.|.=|+||||++|.+.+.-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            35699999999999999999998853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0077  Score=44.85  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCccccc----CCCceEEEEeCCCCCHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSA----HFDKKIWVCVSEPFDDIR  245 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~----~Fd~~~wV~Vs~~~~~~~  245 (251)
                      -.++-|.|.+|+||||||..+..+.....    .+....++..........
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER   73 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHH
Confidence            56999999999999999988765422221    223445555555554443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.42  E-value=0.029  Score=42.57  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          198 LPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .-.++-|.|.+|+|||||+..+..+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3679999999999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.02  Score=43.19  Aligned_cols=40  Identities=15%  Similarity=0.104  Sum_probs=29.2

Q ss_pred             cchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          166 REHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       166 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+...+++.+.+..+.                -...+-++|+.|+||||+|+.+.+
T Consensus         7 ~~~~~~~l~~~~~~~~----------------l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2           7 LRPDFEKLVASYQAGR----------------GHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             GHHHHHHHHHHHHTTC----------------CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC----------------cCeEEEEECCCCCcHHHHHHHHHH
Confidence            3445677777776543                244588899999999999997654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.10  E-value=0.016  Score=45.15  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             eeccchhHHHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          163 VRGREHLQIKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       163 ~~G~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ++|.....+++.+.+..-.              ..+.+ |-|.|..|+|||++|+.++.
T Consensus         2 ~v~~S~~~~~~~~~~~~~a--------------~~~~p-vlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKIS--------------CAECP-VLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHT--------------TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred             eEecCHHHHHHHHHHHHHh--------------CCCCC-EEEECCCCcCHHHHHHHHHH
Confidence            5666666777766665433              12233 57889999999999999986

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.97  E-value=0.025  Score=46.60  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ....|-.+|+.|+|||.||+.+..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            366688899999999999998754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.89  E-value=0.052  Score=42.31  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcC
Q 046918          200 IIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      .++-|.|..|+|||||+..+..+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            47889999999999998887654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.028  Score=44.50  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..+.||+|+|.-+.||+||+..++..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            45999999999999999999999874

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.82  E-value=0.032  Score=43.53  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ---|.++|..|+|||||...+.+..
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3457799999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.0096  Score=43.40  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=8.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 046918          202 ISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       202 i~I~G~gGvGKTTLa~~v~~d  222 (251)
                      |.|+|-.|+|||||+..+.++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999765553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.55  E-value=0.021  Score=43.81  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 046918          201 IISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...++|..|+|||||...+..+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            56789999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.48  E-value=0.022  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.++-++|++|+|||.||+.+..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            34566689999999999999988

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.40  E-value=0.084  Score=41.42  Aligned_cols=48  Identities=21%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIRI  246 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~i  246 (251)
                      ..-++.-|+|..|+||||||-.++..  .++.=..++|+-.-..++...+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~--~q~~g~~~vyIDtE~~~~~e~a  105 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPDYA  105 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHH--HHHTTCEEEEEESSCCCCHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHH--HhcCCCEEEEEECCccCCHHHH
Confidence            45789999999999999999888774  3333346899998888887654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.088  Score=41.16  Aligned_cols=46  Identities=22%  Similarity=0.232  Sum_probs=35.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIR  245 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~  245 (251)
                      .-+++-|+|..|+|||||+-.+.....  +.=..++|+..-..++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q--~~g~~~vyidtE~~~~~~~   98 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY   98 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHH--cCCCEEEEEccccccCHHH
Confidence            367999999999999999999888543  3223578888888887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.11  E-value=0.13  Score=38.28  Aligned_cols=24  Identities=17%  Similarity=-0.058  Sum_probs=21.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          199 PIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      ..-+-++|..|+||||+|..+-+.
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999987763

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.039  Score=42.92  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+.-|+|.+|+|||||+-.+.-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4666899999999999977654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.06  E-value=0.041  Score=44.53  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|-|.|..|+|||||++.+.+.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            3788999999999999998873

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.03  E-value=0.089  Score=41.27  Aligned_cols=47  Identities=23%  Similarity=0.198  Sum_probs=36.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCCHHH
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFDDIR  245 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~~~~  245 (251)
                      +.-++.-|+|..|+||||||-.+.....-..  ..++|+-.-..|+..-
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~~  101 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPVY  101 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHHH
Confidence            3467999999999999999999888533222  3578998888888753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.90  E-value=0.04  Score=46.63  Aligned_cols=23  Identities=39%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .+-|-++|+.|+|||.||+.+..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999976

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.014  Score=42.81  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 046918          201 IISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~  220 (251)
                      +..|+|+.|+||||+...|+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            55678999999999999986

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.86  E-value=0.043  Score=41.28  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=19.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHH-Hhc
Q 046918          198 LPIIISITGMGGIGKTTLARL-IFN  221 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~-v~~  221 (251)
                      .-.++-|.|..|+|||+||.. +++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            366888999999999999965 444

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.64  E-value=0.082  Score=41.61  Aligned_cols=49  Identities=24%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC-HHHHHH
Q 046918          199 PIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD-DIRIAK  248 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~-~~~i~~  248 (251)
                      -+-++|+|..|+|||||+..+.++. .+.+=++++++-+.+... +.++++
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~  117 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYH  117 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHH
Confidence            3459999999999999998887642 223335678888887653 344444

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.054  Score=42.95  Aligned_cols=36  Identities=22%  Similarity=0.038  Sum_probs=28.9

Q ss_pred             HHHHHHhcCCCCCCCccCCCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHhcC
Q 046918          171 IKVANLLMSGSESSTVSTGGSSQVPTQLPIIISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       171 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -++++.|..-.                .-+-++|+|..|+|||||++.+.++
T Consensus        31 ~r~ID~l~Pig----------------rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          31 ARVLDLASPIG----------------RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHHHSCCB----------------TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceeeeeccccc----------------CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            36788886533                3567899999999999999999885

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.94  E-value=0.025  Score=43.49  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 046918          201 IISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ...++|..|+|||||...+..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            34588999999999999998864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.20  E-value=0.083  Score=38.69  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.-|-|.|.+|+||||||-....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            34578899999999999988655

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.97  E-value=0.098  Score=38.32  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .-+-|.|..|+||||||-....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4577889999999999988655

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.092  Score=42.99  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=24.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCc-ccccCCCceEEEEeCCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDN-VVSAHFDKKIWVCVSEP  240 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~-~v~~~Fd~~~wV~Vs~~  240 (251)
                      ++.-|.|.+|.||||++..+...- +....=..+++++.+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTg  205 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG  205 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcH
Confidence            477889999999999886544321 11111124566665543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.77  E-value=0.19  Score=41.56  Aligned_cols=23  Identities=35%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -++|-|.|+.|.||||.+..+.+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhh
Confidence            68999999999999999988766

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.89  E-value=0.24  Score=38.56  Aligned_cols=25  Identities=28%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +.-..+-++|+|+.||||++..|.+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4467888999999999999998765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.78  E-value=0.16  Score=39.91  Aligned_cols=41  Identities=17%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCCCC
Q 046918          200 IIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEPFD  242 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~~~  242 (251)
                      .-++|+|..|+|||+|++.+-..  ...+-+.++++-+.+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~--~~~~~~v~V~~~iGer~~  108 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN--QQGQNVICVYVAIGQKAS  108 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT--CCTTTCEEEEEEESCCHH
T ss_pred             ceEeeccCCCCChHHHHHHHHhh--hcccCceeeeeeecchhH
Confidence            34789999999999999875442  233445778888877553

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.76  E-value=0.12  Score=37.47  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      -.-+-|.|..|+||||||-....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            34677999999999999977554

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.59  E-value=0.12  Score=41.87  Aligned_cols=24  Identities=21%  Similarity=0.140  Sum_probs=21.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHh
Q 046918          197 QLPIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .+++-|+|+|..|.|||||+-.+-
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHH
Confidence            458899999999999999998774

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.29  E-value=0.12  Score=40.89  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 046918          201 IISITGMGGIGKTTLARLIFND  222 (251)
Q Consensus       201 vi~I~G~gGvGKTTLa~~v~~d  222 (251)
                      -|||+|.+.+|||||-..+-+.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4999999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.07  E-value=0.13  Score=42.59  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHhc
Q 046918          199 PIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      .--|+|+|..|+|||||...+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34589999999999999999975

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.64  E-value=0.21  Score=34.18  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=28.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhcCcccccCCCceEEEEeCCC
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFNDNVVSAHFDKKIWVCVSEP  240 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~d~~v~~~Fd~~~wV~Vs~~  240 (251)
                      .+.++.-|+++.|.|||+++-..+.+      ...++++.+...
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~   43 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSV   43 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChH
Confidence            45788889999999999998766542      345677776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.45  E-value=0.18  Score=39.40  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHhcCc
Q 046918          198 LPIIISITGMGGIGKTTLARLIFNDN  223 (251)
Q Consensus       198 ~~~vi~I~G~gGvGKTTLa~~v~~d~  223 (251)
                      ..--|+|+|+..+||+||+..+.+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            35569999999999999999998854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.24  E-value=0.14  Score=40.01  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=12.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 046918          202 ISITGMGGIGKTTLA  216 (251)
Q Consensus       202 i~I~G~gGvGKTTLa  216 (251)
                      +-|.|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            568899999999753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.95  E-value=0.14  Score=40.14  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q 046918          200 IIISITGMGGIGKTTLARLI  219 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v  219 (251)
                      ++-.|+|..|+||||+.+++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            46789999999999999887

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.62  E-value=0.18  Score=39.85  Aligned_cols=15  Identities=33%  Similarity=0.426  Sum_probs=12.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 046918          202 ISITGMGGIGKTTLA  216 (251)
Q Consensus       202 i~I~G~gGvGKTTLa  216 (251)
                      +-|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            557799999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.29  E-value=0.31  Score=36.28  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      ++-.-|.++|+++.|||++|..+.+
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3457888999999999999987665

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.39  E-value=0.26  Score=40.16  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 046918          200 IIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      ++-.|+|..|+||||+..+|+
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            356689999999999999984

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.21  E-value=0.34  Score=35.77  Aligned_cols=24  Identities=33%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHhc
Q 046918          197 QLPIIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       197 ~~~~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +++ -|+|+|-...|||||+..+-.
T Consensus         7 p~i-ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           7 PEV-NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCE-EEEEECSTTSSHHHHHHHHHS
T ss_pred             CCe-EEEEEEccCCcHHHHHHHHHh
Confidence            335 899999999999999998854

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=0.34  Score=38.49  Aligned_cols=18  Identities=39%  Similarity=0.589  Sum_probs=15.1

Q ss_pred             EEEEEEcCCCCcHHHHHH
Q 046918          200 IIISITGMGGIGKTTLAR  217 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~  217 (251)
                      .|-.+.|..|.|||||..
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            355689999999999984

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.62  E-value=0.34  Score=38.65  Aligned_cols=18  Identities=39%  Similarity=0.589  Sum_probs=15.5

Q ss_pred             EEEEEEcCCCCcHHHHHH
Q 046918          200 IIISITGMGGIGKTTLAR  217 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~  217 (251)
                      .|-...|..|.|||||.-
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            567889999999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=80.55  E-value=0.54  Score=35.38  Aligned_cols=22  Identities=23%  Similarity=0.181  Sum_probs=18.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHh
Q 046918          199 PIIISITGMGGIGKTTLARLIF  220 (251)
Q Consensus       199 ~~vi~I~G~gGvGKTTLa~~v~  220 (251)
                      .--|+|+|-...|||||+..+.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHH
Confidence            4448899999999999999873

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.44  Score=39.23  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=17.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q 046918          200 IIISITGMGGIGKTTLARLIFN  221 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~~v~~  221 (251)
                      +=+.|+|..|+|||++++.+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3478999999999999875443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.28  E-value=0.41  Score=38.20  Aligned_cols=18  Identities=39%  Similarity=0.586  Sum_probs=14.9

Q ss_pred             EEEEEEcCCCCcHHHHHH
Q 046918          200 IIISITGMGGIGKTTLAR  217 (251)
Q Consensus       200 ~vi~I~G~gGvGKTTLa~  217 (251)
                      .|-.+.|..|.|||||..
T Consensus        15 d~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            345589999999999983