Citrus Sinensis ID: 046954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG
Secondary Structure (PSIPRED)
ccccHHHHccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccHHccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHccEEEEEccEEEEEcccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccHHHHHHHHHHHHHHccccHHHccccHHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHccEEEEEEccEEEEEEcHHHHcccccHHHHHHHHccc
Coil and Loop (DISEMBL)
tvadnirygpqlrgkklteNEVYKLLSLADldssflsktgaeISVGQAQRVALARTLanepevllldeptsaldpistQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIvevlkpdllseakhpmALRFLQLSG
Flexible Loop (DISEMBL)
tvadnirygpqlrgkklteNEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLldeptsaldpistQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLkpdllseakhpmalrflqlsg
Low Complexity Region (SEG)
TVADNIRYGPQLRGKKLTENEVYKllsladldssflsKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG
Disordered region (IsUnstruct)
****************LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA*************
Disordered Region (DISOPRED)
TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGA*ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL**
Disordered Region (DISEMBL)
TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG
Disordered Region (DISPRO)
TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9C9W0	263	ABC transporter I family	yes	no	0.993	0.551	0.813	2e-64
Q0D9V6	346	Protein STAR1 OS=Oryza sa	yes	no	0.993	0.419	0.779	3e-60
Q8R9I2	249	Phosphate import ATP-bind	yes	no	0.828	0.485	0.472	1e-24
Q12XW6	255	Phosphate import ATP-bind	yes	no	0.849	0.486	0.465	2e-24
Q8RCU0	239	Phosphate import ATP-bind	no	no	0.842	0.514	0.452	8e-24
Q9X0Y8	251	Phosphate import ATP-bind	yes	no	0.828	0.482	0.457	2e-23
O67154	257	Phosphate import ATP-bind	yes	no	0.835	0.474	0.438	2e-22
Q6LY93	251	Phosphate import ATP-bind	yes	no	0.876	0.509	0.433	3e-22
Q9PQU3	329	Phosphate import ATP-bind	yes	no	0.835	0.370	0.453	3e-22
Q3AAA4	253	Phosphate import ATP-bind	yes	no	0.876	0.505	0.426	4e-22

>sp|Q9C9W0|AB17I_ARATH ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1

 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 134/145 (92%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADN+RYGP LRG+KL++ EVYKLLSLADLD+SF  KTGAE+SVGQAQRVALARTLANE
Sbjct: 118 TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANE 177

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+V+GE
Sbjct: 178 PEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGE 237

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVLKP  LS A HPMA RFLQLS
Sbjct: 238 IVEVLKPSELSHATHPMAQRFLQLS 262

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1

 Score =  229 bits (585), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 128/145 (88%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADN+RYGPQL+GKKLT+ EV  LLSLADLD +  SK  +E+SVGQAQRVALARTLAN+
Sbjct: 202 TVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLAND 261

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPISTQNIE+ +V+LKK  G+T VMVSHS+KQIQRIAD+VCLLV GE
Sbjct: 262 PEVLLLDEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGE 321

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           +VEVL P  LSEAKHPMA RFL+LS
Sbjct: 322 VVEVLPPSELSEAKHPMARRFLELS 346

Associates with STAR2 to form a functional transmembrane ABC transporter required for detoxification of aluminum (Al) in roots. Can specifically transport UDP-glucose.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8R9I2|PSTB2_THETN Phosphate import ATP-binding protein PstB 2 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB2 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 87/129 (67%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVY----KLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           TV DN+ YGP++ G   K T NE+     K  +L D     L  +   +S GQ QR+ +A
Sbjct: 98  TVYDNVAYGPRIHGIRDKRTLNEIVEKSLKAAALWDEVKDRLHHSALSLSGGQQQRLCIA 157

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RTLA EPEV+L+DEPTSALDPIST  IE+++ +LKKK+  TI++V+H+++Q  R++D   
Sbjct: 158 RTLAVEPEVILMDEPTSALDPISTMKIEELIEELKKKY--TIIIVTHNMQQAGRVSDYTA 215

Query: 115 LLVNGEIVE 123
             +NGE+VE
Sbjct: 216 FFLNGELVE 224

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q12XW6|PSTB_METBU Phosphate import ATP-binding protein PstB OS=Methanococcoides burtonii (strain DSM 6242) GN=pstB PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 87/131 (66%), Gaps = 7/131 (5%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAE---ISVGQAQRVALAR 55
           ++ DNI YGP++ G  K  TE  V+K L  A L      + G +   +S GQ QR+ +AR
Sbjct: 105 SIYDNIAYGPKIHGCSKSETEERVHKALDDAALMGEVQDRLGDQAFSLSGGQQQRLCIAR 164

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
           TLA +PE+LL DEP SALDPIST  IED++++LKK +  TIV+V+H+++Q  RI+D    
Sbjct: 165 TLAVKPEILLFDEPCSALDPISTSKIEDLILELKKDY--TIVIVTHNMQQAARISDHTAF 222

Query: 116 LVNGEIVEVLK 126
            ++GEI+E  K
Sbjct: 223 FLHGEIIEFGK 233

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q8RCU0|PSTB1_THETN Phosphate import ATP-binding protein PstB 1 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB1 PE=3 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 3/126 (2%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV +NI  GP LRG+K  +   Y  L    L   +L K    +S G+AQRV++AR LAN 
Sbjct: 91  TVKENIELGPSLRGEKNIDALFY--LEAVGLSKDYLFKDVNNLSGGEAQRVSIARALANS 148

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTS+LDP ST  IE+++ +L  + G+ +++V+H+++Q +RI D    L  GE
Sbjct: 149 PEVLLLDEPTSSLDPTSTSIIEELIKRL-NREGIMVILVTHNMEQAKRIGDYTLFLYKGE 207

Query: 121 IVEVLK 126
           ++E  K
Sbjct: 208 LIEARK 213

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q9X0Y8|PSTB_THEMA Phosphate import ATP-binding protein PstB OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=pstB PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ +GP++ G K          E  K  +L D   S L+K+G  +S GQ QR+ +A
Sbjct: 100 SIYDNVAFGPRIHGVKSKHILDRIVEESLKKAALWDEVKSELNKSGTRLSGGQQQRLCIA 159

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEV+LLDEPTSALDPI+TQ IE +L +L + +  TIV+V+H+I Q  RIAD + 
Sbjct: 160 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY--TIVIVTHNIGQAIRIADYIA 217

Query: 115 LLVNGEIVE 123
            +  GE++E
Sbjct: 218 FMYRGELIE 226

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|O67154|PSTB_AQUAE Phosphate import ATP-binding protein PstB OS=Aquifex aeolicus (strain VF5) GN=pstB PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 8/130 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG +LRG   K + + +V K L   +L D     L +    +S GQ QR+ +A
Sbjct: 106 SIYENVAYGLKLRGIKKKSILDEKVEKALRDAALWDEVKDRLHENAYSLSGGQQQRLCIA 165

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R +A EPEVLL+DEPTSALDPIST  IED++V+LKKK  +TI++V+H+++Q  R++D   
Sbjct: 166 RAIAVEPEVLLMDEPTSALDPISTAKIEDLIVELKKK--VTIIIVTHNMQQAARVSDFTA 223

Query: 115 LLVNGEIVEV 124
            +  GE++E 
Sbjct: 224 FMYMGELIEF 233

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q6LY93|PSTB_METMP Phosphate import ATP-binding protein PstB OS=Methanococcus maripaludis (strain S2 / LL) GN=pstB PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 90/136 (66%), Gaps = 8/136 (5%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI YGP++ G    K+L E      K  +L D     L K+  ++S GQ QR+ +A
Sbjct: 100 SIYDNIAYGPRIHGIKDKKQLDEIVEWALKKSALWDDVKEDLKKSALKLSGGQQQRLCIA 159

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+A +P+V+L+DEP SALDPIST  IED++V+LKK++  TIV+V+H+++Q  R++D   
Sbjct: 160 RTIAVKPDVILMDEPCSALDPISTLKIEDLMVELKKEY--TIVIVTHNMQQASRVSDYTG 217

Query: 115 LLVNGEIVEVLKPDLL 130
             + G++VE  K D L
Sbjct: 218 FFMLGDLVEFNKTDKL 233

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Methanococcus maripaludis (strain S2 / LL) (taxid: 267377)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q9PQU3|PSTB_UREPA Phosphate import ATP-binding protein PstB OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) GN=pstB PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 84/130 (64%), Gaps = 8/130 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP+  G   +K+ E  V K L   +L D     L K G  +S GQ QR+ +A
Sbjct: 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R +A EPEVLL+DEPTSALDPI+T  IE+++++LKKK+  +I++V+HS+ Q QRI+D   
Sbjct: 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY--SIIIVTHSMAQAQRISDETV 295

Query: 115 LLVNGEIVEV 124
               G I E 
Sbjct: 296 FFYQGWIEEA 305

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Ureaplasma parvum serovar 3 (strain ATCC 700970) (taxid: 273119)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q3AAA4|PSTB_CARHZ Phosphate import ATP-binding protein PstB OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pstB PE=3 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 90/136 (66%), Gaps = 8/136 (5%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           +V +N+ Y P++ G    +KL E   +  +  +L D     L K    +S GQ QR+ +A
Sbjct: 102 SVYENVAYAPKIHGLKDKRKLDEIVEKSLRGAALWDEVKDRLHKPATGLSGGQQQRLCIA 161

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEVLL+DEPTSALDPIST  IE+++ +LKKK+  TIV+V+H+++Q  RI+D   
Sbjct: 162 RALAIEPEVLLMDEPTSALDPISTMRIEELIQELKKKY--TIVIVTHNMQQAARISDRTA 219

Query: 115 LLVNGEIVEVLKPDLL 130
             +NGE++E+ + +++
Sbjct: 220 FFLNGELIEMDRTEVI 235

Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
225445992	268	PREDICTED: ABC transporter I family memb	0.993	0.541	0.882	3e-68
147791112	251	hypothetical protein VITISV_010974 [Viti	0.993	0.577	0.889	8e-68
224144230	272	predicted protein [Populus trichocarpa]	0.993	0.533	0.889	2e-67
255562070	276	phosphate abc transporter, putative [Ric	0.993	0.525	0.862	2e-65
449466057	269	PREDICTED: ABC transporter I family memb	0.993	0.539	0.848	2e-65
297841533	262	ATNAP3 [Arabidopsis lyrata subsp. lyrata	0.993	0.553	0.813	1e-62
15220604	263	ABC transporter I family member 17 [Arab	0.993	0.551	0.813	1e-62
356524710	260	PREDICTED: ABC transporter I family memb	0.993	0.557	0.786	2e-60
255642389	157	unknown [Glycine max]	0.993	0.923	0.779	4e-60
357521679	255	ABC transporter I family member [Medicag	0.993	0.568	0.780	2e-58

>gi|225445992|ref|XP_002266816.1| PREDICTED: ABC transporter I family member 17 [Vitis vinifera] gi|297735429|emb|CBI17869.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/145 (88%), Positives = 138/145 (95%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADNIRYGPQLRGKKLT+NEV KLL+LADLDSSF+ KTG E+SVGQAQRVALARTLANE
Sbjct: 123 TVADNIRYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANE 182

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPISTQNIEDV+VKLKK  GMT+VMVSHSIKQIQRIAD VCLLV+GE
Sbjct: 183 PEVLLLDEPTSALDPISTQNIEDVIVKLKKSRGMTVVMVSHSIKQIQRIADRVCLLVDGE 242

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           I+EVL+PD LSEA+HPMALRFLQLS
Sbjct: 243 IIEVLEPDKLSEARHPMALRFLQLS 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791112|emb|CAN70271.1| hypothetical protein VITISV_010974 [Vitis vinifera]

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 129/145 (88%), Positives = 137/145 (94%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADNIRYGPQLRGKKLT+NEV KLL+LADLDSSF+ KTG E+SVGQAQRVALARTLANE
Sbjct: 106 TVADNIRYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANE 165

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPISTQNIEDV+VKLKK  GMTIVMVSHSIKQIQRIAD VCLLV+GE
Sbjct: 166 PEVLLLDEPTSALDPISTQNIEDVIVKLKKSRGMTIVMVSHSIKQIQRIADRVCLLVDGE 225

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           I EVL+PD LSEA+HPMALRFLQLS
Sbjct: 226 ITEVLEPDKLSEARHPMALRFLQLS 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144230|ref|XP_002325227.1| predicted protein [Populus trichocarpa] gi|222866661|gb|EEF03792.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/145 (88%), Positives = 137/145 (94%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADNIRYGPQL+GKKLT++EVYKLLSLADLDSSF  KT  E+SVGQAQRVALARTLANE
Sbjct: 127 TVADNIRYGPQLKGKKLTDDEVYKLLSLADLDSSFYKKTSNELSVGQAQRVALARTLANE 186

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPISTQNIEDVLVKLKK+ G+T+V+VSHSIKQIQRIADVVCLLVNGE
Sbjct: 187 PEVLLLDEPTSALDPISTQNIEDVLVKLKKQQGLTVVIVSHSIKQIQRIADVVCLLVNGE 246

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVLKPD LSEAKHPMA RFLQL 
Sbjct: 247 IVEVLKPDDLSEAKHPMAQRFLQLG 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562070|ref|XP_002522043.1| phosphate abc transporter, putative [Ricinus communis] gi|223538642|gb|EEF40243.1| phosphate abc transporter, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 135/145 (93%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           T+ADNIRYGPQLRGKKL++NEV+KLL LADLDSSF  K   E+SVGQAQRVALARTLANE
Sbjct: 131 TIADNIRYGPQLRGKKLSDNEVHKLLILADLDSSFHKKNYGELSVGQAQRVALARTLANE 190

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPISTQNIE+V+VKLKK  GMTIVMVSHSIKQIQR+ADVVCLLVNGE
Sbjct: 191 PEVLLLDEPTSALDPISTQNIEEVIVKLKKNQGMTIVMVSHSIKQIQRVADVVCLLVNGE 250

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           +VEVLKP+ LSEAKHPMA RFLQLS
Sbjct: 251 VVEVLKPNELSEAKHPMAQRFLQLS 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466057|ref|XP_004150743.1| PREDICTED: ABC transporter I family member 17-like [Cucumis sativus] gi|449506635|ref|XP_004162805.1| PREDICTED: ABC transporter I family member 17-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 138/145 (95%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADNIRYGPQLRGKKL+++EV+KLLSLADLDSSF SK G+E+SVGQAQRVALARTLAN 
Sbjct: 124 TVADNIRYGPQLRGKKLSDDEVHKLLSLADLDSSFFSKIGSELSVGQAQRVALARTLANA 183

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPIST+NIEDVLV+LK + G+TIVMVSHSIKQIQRIAD+VCLLVNGE
Sbjct: 184 PEVLLLDEPTSALDPISTENIEDVLVRLKTRWGLTIVMVSHSIKQIQRIADIVCLLVNGE 243

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVE+L P+ LSEAKHPMAL+FL+LS
Sbjct: 244 IVEILPPNKLSEAKHPMALKFLELS 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841533|ref|XP_002888648.1| ATNAP3 [Arabidopsis lyrata subsp. lyrata] gi|297334489|gb|EFH64907.1| ATNAP3 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 134/145 (92%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADN+RYGP LRG+KL++ EVYKLLSLADLD+SF  KTGAE+SVGQAQRVALARTLANE
Sbjct: 117 TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANE 176

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+V+GE
Sbjct: 177 PEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLIVDGE 236

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVLKP  LS A HPMA RFLQLS
Sbjct: 237 IVEVLKPSELSHATHPMAQRFLQLS 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220604|ref|NP_176961.1| ABC transporter I family member 17 [Arabidopsis thaliana] gi|75333593|sp|Q9C9W0.1|AB17I_ARATH RecName: Full=ABC transporter I family member 17; Short=ABC transporter ABCI.17; Short=AtABCI17; AltName: Full=MRP-related protein 1; AltName: Full=Non-intrinsic ABC protein 3 gi|12324076|gb|AAG52004.1|AC012563_14 putative ABC transporter; 66585-65723 [Arabidopsis thaliana] gi|21554406|gb|AAM63511.1| putative ABC transporter [Arabidopsis thaliana] gi|26450485|dbj|BAC42356.1| putative ABC transporter [Arabidopsis thaliana] gi|28827588|gb|AAO50638.1| putative ABC transporter protein [Arabidopsis thaliana] gi|298286464|dbj|BAJ09459.1| sensitive to aluminum rhizotoxicity 1 [Arabidopsis thaliana] gi|332196603|gb|AEE34724.1| ABC transporter I family member 17 [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/145 (81%), Positives = 134/145 (92%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TVADN+RYGP LRG+KL++ EVYKLLSLADLD+SF  KTGAE+SVGQAQRVALARTLANE
Sbjct: 118 TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANE 177

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+V+GE
Sbjct: 178 PEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGE 237

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVLKP  LS A HPMA RFLQLS
Sbjct: 238 IVEVLKPSELSHATHPMAQRFLQLS 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524710|ref|XP_003530971.1| PREDICTED: ABC transporter I family member 17-like [Glycine max]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 131/145 (90%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           +VADN+RYGPQLRGKKL+++EV KLL +ADLD+SF+ K+GAE+SVGQAQRVALARTLAN 
Sbjct: 115 SVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANS 174

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P+VLLLDEPTSALDPIST+NIED LVKL K  GMT++MVSHSIKQIQRIA +VCLLV+GE
Sbjct: 175 PQVLLLDEPTSALDPISTENIEDALVKLNKNQGMTVIMVSHSIKQIQRIAHIVCLLVDGE 234

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVL P  LS+A HPMA RFLQLS
Sbjct: 235 IVEVLNPHNLSQANHPMAKRFLQLS 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642389|gb|ACU21458.1| unknown [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 131/145 (90%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           +VADN+RYGPQLRGKKL+++EV KLL +ADLD+SF+ K+GAE+SVGQAQRVALARTLAN 
Sbjct: 12  SVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANS 71

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P+VLLLDEPTSALDPIST+NIED LVKL K  GMT++MVSHSIKQIQRIA +VCLLV+GE
Sbjct: 72  PQVLLLDEPTSALDPISTENIEDALVKLNKNQGMTVIMVSHSIKQIQRIAHIVCLLVDGE 131

Query: 121 IVEVLKPDLLSEAKHPMALRFLQLS 145
           IVEVL P  LS+A HPMA RFL+LS
Sbjct: 132 IVEVLNPHNLSQANHPMAKRFLRLS 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521679|ref|XP_003631128.1| ABC transporter I family member [Medicago truncatula] gi|217072754|gb|ACJ84737.1| unknown [Medicago truncatula] gi|355525150|gb|AET05604.1| ABC transporter I family member [Medicago truncatula] gi|388494374|gb|AFK35253.1| unknown [Medicago truncatula]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 131/146 (89%), Gaps = 1/146 (0%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLAN 59
           TVADN+RYGPQLRG KLT++EV KLL +ADLD S+F  K+GAE+SVGQAQRVALARTLAN
Sbjct: 109 TVADNVRYGPQLRGIKLTDDEVGKLLLMADLDASTFKDKSGAELSVGQAQRVALARTLAN 168

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            PEVLLLDEPTSALDPIST+NIE  L+KL K  GMT++MVSHSIKQIQR+ADVVCL+V+G
Sbjct: 169 SPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLVVDG 228

Query: 120 EIVEVLKPDLLSEAKHPMALRFLQLS 145
           EIVEVLKP+ LS+A HPMA RFL+LS
Sbjct: 229 EIVEVLKPNQLSQANHPMARRFLELS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2200226	263	ABCI17 "ATP-binding cassette I	0.993	0.551	0.744	2.1e-52
UNIPROTKB|Q0D9V6	346	STAR1 "Protein STAR1" [Oryza s	0.993	0.419	0.717	3.2e-49
TIGR_CMR|CHY_2116	253	CHY_2116 "phosphate ABC transp	0.876	0.505	0.404	4.9e-21
TIGR_CMR|NSE_0808	255	NSE_0808 "putative phosphate A	0.828	0.474	0.407	6.5e-19
UNIPROTKB|P30750	343	metN [Escherichia coli K-12 (t	0.705	0.300	0.423	9e-19
TIGR_CMR|BA_0174	346	BA_0174 "ABC transporter, ATP-	0.691	0.291	0.451	1.3e-18
TIGR_CMR|BA_4493	271	BA_4493 "phosphate ABC transpo	0.828	0.446	0.387	2.2e-18
UNIPROTKB|P14175	400	proV "glycine betaine / prolin	0.876	0.32	0.403	2.3e-18
UNIPROTKB|Q9KN92	251	pstB2 "Phosphate import ATP-bi	0.828	0.482	0.387	5.8e-18
TIGR_CMR|GSU_1096	259	GSU_1096 "phosphate ABC transp	0.828	0.467	0.364	5.8e-18

TAIR|locus:2200226 ABCI17 "ATP-binding cassette I17" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 108/145 (74%), Positives = 123/145 (84%)

Query:     1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANE 60
             TVADN+RYGP LRG+KL++ EVYK             KTGAE+SVGQAQRVALARTLANE
Sbjct:   118 TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANE 177

Query:    61 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
             PEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+V+GE
Sbjct:   178 PEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGE 237

Query:   121 IVEVLKPDLLSEAKHPMALRFLQLS 145
             IVEVLKP  LS A HPMA RFLQLS
Sbjct:   238 IVEVLKPSELSHATHPMAQRFLQLS 262

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|Q0D9V6 STAR1 "Protein STAR1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 104/145 (71%), Positives = 118/145 (81%)

Query:     1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANE 60
             TVADN+RYGPQL+GKKLT+ EV               K  +E+SVGQAQRVALARTLAN+
Sbjct:   202 TVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLAND 261

Query:    61 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
             PEVLLLDEPTSALDPISTQNIE+ +V+LKK  G+T VMVSHS+KQIQRIAD+VCLLV GE
Sbjct:   262 PEVLLLDEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGE 321

Query:   121 IVEVLKPDLLSEAKHPMALRFLQLS 145
             +VEVL P  LSEAKHPMA RFL+LS
Sbjct:   322 VVEVLPPSELSEAKHPMARRFLELS 346

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

TIGR_CMR|CHY_2116 CHY_2116 "phosphate ABC transporter, ATP-binding protein PstB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/136 (40%), Positives = 86/136 (63%)

Query:     1 TVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALA 54
             +V +N+ Y P++ G    +KL E   +  +             K    +S GQ QR+ +A
Sbjct:   102 SVYENVAYAPKIHGLKDKRKLDEIVEKSLRGAALWDEVKDRLHKPATGLSGGQQQRLCIA 161

Query:    55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
             R LA EPEVLL+DEPTSALDPIST  IE+++ +LKKK+  TIV+V+H+++Q  RI+D   
Sbjct:   162 RALAIEPEVLLMDEPTSALDPISTMRIEELIQELKKKY--TIVIVTHNMQQAARISDRTA 219

Query:   115 LLVNGEIVEVLKPDLL 130
               +NGE++E+ + +++
Sbjct:   220 FFLNGELIEMDRTEVI 235

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=ISS

TIGR_CMR|NSE_0808 NSE_0808 "putative phosphate ABC transporter, ATP-binding protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/130 (40%), Positives = 83/130 (63%)

Query:     1 TVADNIRYGPQLRG---KKLTENEVY-KXXXXXXX---XXXXXXKTGAEISVGQAQRVAL 53
             ++ DN+ YGP+L+G   K+   +E+  K                +   E+S GQ QR+ +
Sbjct:   104 SIYDNVAYGPRLQGITNKRGQLDEIVCKSLLRSGLWEEVHENLHQNAMELSGGQQQRLCI 163

Query:    54 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
             AR +A +P +LL+DEP SALDP +T+ IED++++LKKK   TI++V+HS+KQ + I+DV+
Sbjct:   164 ARAVAVKPTILLMDEPCSALDPKATKLIEDLVIELKKK--FTIIIVTHSMKQARNISDVI 221

Query:   114 CLLVNGEIVE 123
               L  G+IVE
Sbjct:   222 VYLEKGKIVE 231

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=ISS

UNIPROTKB|P30750 metN [Escherichia coli K-12 (taxid:83333)]

 Score = 226 (84.6 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 44/104 (42%), Positives = 74/104 (71%)

Query:    41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
             + +S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L  + ++ G+TI++++
Sbjct:   139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198

Query:   101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
             H +  ++RI D V ++ NGE++E     ++ S  K P+A +F+Q
Sbjct:   199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA;IDA

GO:0048474 "D-methionine transmembrane transporter activity" evidence=IEA;IDA

GO:0048473 "D-methionine transport" evidence=IEA

GO:0015821 "methionine transport" evidence=IEA

GO:0009276 "Gram-negative-bacterium-type cell wall" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|BA_0174 BA_0174 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 225 (84.3 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 47/104 (45%), Positives = 75/104 (72%)

Query:    41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
             +E+S GQ QRVA+AR L++EPEVLL DE TSALDP +T +I D+L+K+ ++ G+TI++++
Sbjct:   139 SELSGGQKQRVAIARALSHEPEVLLSDEATSALDPETTDSILDLLLKINEEIGITILLIT 198

Query:   101 HSIKQIQRIADVVCLLVNGEIVE--VLKPDLLSEAKHPMALRFL 142
             H +  IQRI D V ++ +G +VE   +K D+ +  +H    +F+
Sbjct:   199 HEMNVIQRICDRVAVMEHGAVVESGTVK-DIFTNPQHVTTKKFV 241

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|BA_4493 BA_4493 "phosphate ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 50/129 (38%), Positives = 79/129 (61%)

Query:     1 TVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXK---TGAEISVGQAQRVALA 54
             ++ +N+ YGP++ G   KK  +  V K             +       +S GQ QR+ +A
Sbjct:   120 SIYENVAYGPKIHGISDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179

Query:    55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
             R LA EP+V+L+DEPTSALDPIST  +E+++ +LKK    +IV+V+H+++Q  RI+D   
Sbjct:   180 RCLAIEPDVILMDEPTSALDPISTLKVEELIQELKKD--FSIVIVTHNMQQAARISDKTA 237

Query:   115 LLVNGEIVE 123
               ++GE+VE
Sbjct:   238 FFLSGEVVE 246

GO:0005524 "ATP binding" evidence=ISS

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|P14175 proV "glycine betaine / proline ABC transporter - ATP binding subunit" [Escherichia coli K-12 (taxid:83333)]

 Score = 226 (84.6 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 52/129 (40%), Positives = 70/129 (54%)

Query:     1 TVADNIRYGPQLRGKKLTEN-EVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
             TV DN  +G +L G    E  E                    E+S G  QRV LAR LA 
Sbjct:   122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181

Query:    60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
              P++LL+DE  SALDP+    ++D LVKL+ KH  TIV +SH + +  RI D + ++ NG
Sbjct:   182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241

Query:   120 EIVEVLKPD 128
             E+V+V  PD
Sbjct:   242 EVVQVGTPD 250

GO:0031460 "glycine betaine transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0006865 "amino acid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9KN92 pstB2 "Phosphate import ATP-binding protein PstB 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 50/129 (38%), Positives = 80/129 (62%)

Query:     1 TVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXKTGAE---ISVGQAQRVALA 54
             ++ +N+ YG + +G   KK  +  V +             +  +    +S GQ QR+ +A
Sbjct:   100 SIYENVAYGLRAQGIKDKKHLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 159

Query:    55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
             RT+A EP+V+L+DEPTSALDPI+T  IE+++  LKK +  TIV+V+HS++Q +RI+D   
Sbjct:   160 RTIAMEPDVILMDEPTSALDPIATHKIEELMEDLKKNY--TIVIVTHSMQQARRISDRTA 217

Query:   115 LLVNGEIVE 123
               + GE+VE
Sbjct:   218 FFLMGELVE 226

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=ISS

TIGR_CMR|GSU_1096 GSU_1096 "phosphate ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 47/129 (36%), Positives = 80/129 (62%)

Query:     1 TVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXKTGA---EISVGQAQRVALA 54
             ++ +N+ YG ++RG   + + E +V +             +       +S GQ QR+ +A
Sbjct:   108 SIFENVAYGLRVRGISKRSVLEEKVEEALTNAAIWNEVKDRLSDLAFNLSGGQQQRLCIA 167

Query:    55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
             R LA +PE++L DEPTSALDPI+T NIE+++ +LK++   TI++V+H+++Q  R++D   
Sbjct:   168 RALAIDPEIMLFDEPTSALDPIATANIEELMAELKER--FTILIVTHNMQQAARVSDFTA 225

Query:   115 LLVNGEIVE 123
              L  GE+VE
Sbjct:   226 FLYLGEVVE 234

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W0	AB17I_ARATH	No assigned EC number	0.8137	0.9931	0.5513	yes	no
Q0D9V6	STAR1_ORYSJ	No assigned EC number	0.7793	0.9931	0.4190	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031325001	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (157 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023093001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)	•						•		0.554
	GSVIVG00033530001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (329 aa)	•						•		0.514
	GSVIVG00038133001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (582 aa)			•						0.416
	GSVIVG00037795001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (297 aa)			•						0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	5e-54
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	8e-41
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-37
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	9e-37
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-36
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	7e-35
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-33
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-32
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-32
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-31
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	3e-31
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	3e-31
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	7e-31
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	9e-31
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-30
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	6e-30
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	6e-30
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-30
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	9e-30
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	6e-29
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	7e-29
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	8e-29
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	8e-29
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-28
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-28
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-28
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-28
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-28
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-27
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-27
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-27
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	4e-27
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	4e-27
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-27
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	8e-27
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	8e-27
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-26
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-26
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-26
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-26
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-26
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-26
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-26
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	5e-26
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	5e-26
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-25
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-25
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	1e-25
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-25
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-25
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-25
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	4e-25
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	4e-25
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-25
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-25
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	8e-25
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	1e-24
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-24
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-24
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	6e-24
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-23
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-23
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-23
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-23
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-23
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	3e-23
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	3e-23
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-23
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-23
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	3e-23
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-23
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	4e-23
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	5e-23
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	6e-23
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	7e-23
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	8e-23
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	8e-23
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-23
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	1e-22
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	2e-22
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	2e-22
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	3e-22
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	4e-22
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	4e-22
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	6e-22
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	8e-22
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	9e-22
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	9e-22
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-21
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-21
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-21
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-21
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-21
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-21
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	3e-21
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-21
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	5e-21
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-21
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	7e-21
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	7e-21
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-20
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-20
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	1e-20
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-20
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-20
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-20
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-20
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	4e-20
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	5e-20
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	5e-20
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-19
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-19
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-19
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-19
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	3e-19
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-19
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-19
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	6e-19
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	6e-19
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-18
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-18
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-18
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	2e-18
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-18
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	3e-18
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	4e-18
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-18
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	4e-18
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	5e-18
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	5e-18
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	5e-18
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-18
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	7e-18
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	7e-18
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	8e-18
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-17
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-17
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-17
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-17
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	3e-17
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	3e-17
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-17
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-17
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-17
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	5e-17
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	5e-17
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	5e-17
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	8e-17
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	8e-17
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	8e-17
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	8e-17
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-16
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-16
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-16
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-16
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-16
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-16
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-16
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	2e-16
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-16
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-16
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-16
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-16
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-16
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	8e-16
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-15
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-15
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	1e-15
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-15
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-15
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-15
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-15
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	4e-15
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	5e-15
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-15
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	5e-15
pfam00005	119	pfam00005, ABC_tran, ABC transporter	7e-15
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-14
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-14
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-14
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-14
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-14
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-14
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	3e-14
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-14
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-14
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	3e-14
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	3e-14
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	6e-14
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	7e-14
COG4987	573	COG4987, CydC, ABC-type transport system involved	9e-14
COG5265	497	COG5265, ATM1, ABC-type transport system involved	9e-14
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-13
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-13
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-13
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-13
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-13
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-13
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-13
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-13
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-13
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-13
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-13
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-13
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-13
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	4e-13
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-13
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	5e-13
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	5e-13
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-13
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	7e-13
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	8e-13
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	8e-13
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	9e-13
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	1e-12
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-12
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-12
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-12
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-12
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-12
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-12
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-12
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-12
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	6e-12
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	6e-12
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	7e-12
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	8e-12
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-11
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-11
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	1e-11
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-11
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-11
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	3e-11
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-11
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-11
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-11
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-11
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	5e-11
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	5e-11
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-11
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	6e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-11
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-11
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	8e-11
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	8e-11
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-10
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	1e-10
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-10
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-10
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-10
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-10
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-10
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-10
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	3e-10
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-10
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-10
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	4e-10
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	4e-10
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	6e-10
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	6e-10
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	8e-10
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	8e-10
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	8e-10
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-09
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-09
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-09
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-09
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	2e-09
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-09
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-09
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	3e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	4e-09
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	4e-09
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-09
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	6e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-08
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-08
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-08
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-08
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-08
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	2e-08
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	2e-08
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	3e-08
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	4e-08
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	5e-08
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	7e-08
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	7e-08
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	9e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-07
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-07
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-07
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-07
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	3e-07
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	3e-07
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	4e-07
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	5e-07
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	5e-07
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	7e-07
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	7e-07
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	7e-07
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	8e-07
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	8e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	9e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	1e-06
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-06
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-06
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-06
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-06
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-06
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-06
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-06
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	2e-06
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	2e-06
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-06
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	5e-06
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	6e-06
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	7e-06
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	8e-06
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-05
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	3e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	3e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	7e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	8e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	2e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-04
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	2e-04
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	2e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-04
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-04
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	4e-04
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	4e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	6e-04
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	9e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.002
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	0.002
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	0.003
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.003
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	0.003
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	0.004

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  169 bits (430), Expect = 5e-54
 Identities = 63/134 (47%), Positives = 86/134 (64%), Gaps = 6/134 (4%)

Query: 1   TVADNIRYGPQLRGKKLTEN---EVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALART 56
           ++ DN+ YG +L G KL E     V + L  A L      +  A  +S GQ QR+ LAR 
Sbjct: 96  SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LANEPEVLLLDEPTSALDPIST  IE+++ +LKK+   TIV+V+H+++Q  R+AD    L
Sbjct: 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFL 213

Query: 117 VNGEIVEVLKPDLL 130
           +NG +VE    + +
Sbjct: 214 LNGRLVEFGPTEQI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  136 bits (343), Expect = 8e-41
 Identities = 63/126 (50%), Positives = 89/126 (70%), Gaps = 2/126 (1%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV DNI YGP L+G+K  + E Y  LS+  L+  + ++    +S G+AQRV++ARTLAN 
Sbjct: 92  TVKDNIEYGPMLKGEKNVDVEYY--LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PEVLLLDEPTSALDP ST+ IE+++VKLK K  +T++ ++H+++Q +RI D    L  G 
Sbjct: 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGI 209

Query: 121 IVEVLK 126
           +VE  K
Sbjct: 210 LVEYAK 215

Length = 241

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  128 bits (323), Expect = 1e-37
 Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 7/128 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLL---SLADLDSSFLSKTGAEISVGQAQRVALAR 55
           ++ DN+ YG +L G K  E +  V   L   +L D     L K+   +S GQ QR+ +AR
Sbjct: 103 SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA +PEVLL+DEPTSALDPIST  IE+++ +LKKK   TIV+V+H+++Q  R++D    
Sbjct: 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK--YTIVIVTHNMQQAARVSDYTAF 220

Query: 116 LVNGEIVE 123
              GE+VE
Sbjct: 221 FYLGELVE 228

Length = 253

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  125 bits (317), Expect = 9e-37
 Identities = 61/129 (47%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI YGP+L G   KK  +  V + L   +L D     L  +   +S GQ QR+ +A
Sbjct: 97  SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEVLLLDEPTSALDPI+T  IE+++ +LKKK   TIV+V+H+++Q  RI+D   
Sbjct: 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTA 214

Query: 115 LLVNGEIVE 123
              +GE+VE
Sbjct: 215 FFYDGELVE 223

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  126 bits (319), Expect = 3e-36
 Identities = 57/148 (38%), Positives = 91/148 (61%), Gaps = 8/148 (5%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+ +  +L G  K   +  V +LL L  L S    +  A++S GQ QRVA+AR LA
Sbjct: 99  TVFENVAFPLELAGVPKAEIKQRVAELLELVGL-SDKADRYPAQLSGGQKQRVAIARALA 157

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N P++LL DE TSALDP +TQ+I ++L  + ++ G+TIV+++H ++ ++RI D V +L  
Sbjct: 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ 217

Query: 119 GEIVE---VLKPDLLSEAKHPMALRFLQ 143
           G +VE   V   ++ +  KH +   F+ 
Sbjct: 218 GRLVEEGTVS--EVFANPKHAITQEFIG 243

Length = 339

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  120 bits (304), Expect = 7e-35
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 8/136 (5%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP+  G    KKL E   +  K  +L D     L K+   +S GQ QR+ +A
Sbjct: 99  SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEVLL+DEPTSALDPIST  IE+++ +LKK +  TIV+V+H+++Q  RI+D   
Sbjct: 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY--TIVIVTHNMQQASRISDKTA 216

Query: 115 LLVNGEIVEVLKPDLL 130
             +NGEIVE      L
Sbjct: 217 FFLNGEIVEFGDTVDL 232

Length = 250

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  119 bits (300), Expect = 1e-33
 Identities = 54/131 (41%), Positives = 83/131 (63%), Gaps = 3/131 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTL 57
           TVA+NI   P+L G  K+  +    +LL L  LD S +  +   E+S GQ QRV +AR L
Sbjct: 91  TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A +P +LL+DEP  ALDPI+ + +++ + +L+K+ G TIV V+H I +  ++AD + ++ 
Sbjct: 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD 210

Query: 118 NGEIVEVLKPD 128
            GEIV+   PD
Sbjct: 211 AGEIVQYDTPD 221

Length = 309

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  114 bits (287), Expect = 1e-32
 Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TVA+NI +G +LRG    E    V +LL L  L+   L++   E+S GQ QRVALAR LA
Sbjct: 88  TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALA 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP +LLLDEP SALD    + + + L +L+++ G+T + V+H  ++   +AD + ++  
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206

Query: 119 GEIVEV 124
           G IV+V
Sbjct: 207 GRIVQV 212

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  113 bits (286), Expect = 3e-32
 Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 3/125 (2%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+    ++ G    E E  V +LL L  L         A++S GQ QRV +AR LA
Sbjct: 98  TVFENVALPLEIAGVPKAEIEERVLELLELVGL-EDKADAYPAQLSGGQKQRVGIARALA 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N P+VLL DE TSALDP +TQ+I  +L  + ++ G+TIV+++H ++ ++RI D V ++  
Sbjct: 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216

Query: 119 GEIVE 123
           GE+VE
Sbjct: 217 GEVVE 221

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  111 bits (280), Expect = 2e-31
 Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 3/131 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTL 57
           TV +NI   P+L    K+       +LL+L  LD   F  +   E+S GQ QRV +AR L
Sbjct: 91  TVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL 150

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A +P +LL+DEP  ALDPI+   +++   +L+++ G TIV V+H I +  R+AD + ++ 
Sbjct: 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK 210

Query: 118 NGEIVEVLKPD 128
           NGEIV+V  PD
Sbjct: 211 NGEIVQVGTPD 221

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  111 bits (281), Expect = 3e-31
 Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 1/137 (0%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV   +    +  G   ++  + +LL    L  SFL +   E+S GQ QR+A+AR L  E
Sbjct: 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P++L+LDEPTSALD      I ++L++LKK+ G+T + +SH +  ++ + D + ++ NG+
Sbjct: 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQ 219

Query: 121 IVEVLK-PDLLSEAKHP 136
           IVE+    +LLS   HP
Sbjct: 220 IVEIGPTEELLSHPSHP 236

Length = 252

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 3e-31
 Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 9/149 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ +GP++ G K          E  K  +L D   S L+K G  +S GQ QR+ +A
Sbjct: 99  SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEV+LLDEPTSALDPI+TQ IE +L +L + +  TIV+V+H+I Q  RIAD + 
Sbjct: 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY--TIVIVTHNIGQAIRIADYIA 216

Query: 115 LLVNGEIVEVLK-PDLLSEAKHPMALRFL 142
            +  GE++E     +++   K+ +   +L
Sbjct: 217 FMYRGELIEYGPTREIVERPKNKLTEEYL 245

Length = 250

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  111 bits (280), Expect = 7e-31
 Identities = 47/134 (35%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+ +  +L G    E E  + +LL L  L+    +K    +S G  QR+++A  L 
Sbjct: 94  TVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALL 152

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           ++PE+L+LDEPTS LDP S + I ++L +L K+ G+TI++ +H +++ + + D V +L +
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212

Query: 119 GEIVEVLKPDLLSE 132
           G+I+    P+ L E
Sbjct: 213 GKIIAEGTPEELKE 226

Length = 293

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  108 bits (272), Expect = 9e-31
 Identities = 40/77 (51%), Positives = 58/77 (75%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S GQ QRVALAR LA +P+VLLLDEPTSALDPI+ + +  +L  L+ + G+T+V+V+H +
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161

Query: 104 KQIQRIADVVCLLVNGE 120
            +  R+AD V +L +G+
Sbjct: 162 DEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  109 bits (275), Expect = 1e-30
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV DN+  G +L+G  K        +LL L  L S F +    ++S G  QRVALAR LA
Sbjct: 89  TVLDNVALGLELQGVPKAEARERAEELLELVGL-SGFENAYPHQLSGGMRQRVALARALA 147

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL-- 116
            +P+VLLLDEP SALD ++ + +++ L+ + ++ G T+++V+H I +   +AD V +L  
Sbjct: 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207

Query: 117 VNGEIVEVLKPDL 129
             G IV  ++ DL
Sbjct: 208 RPGRIVAEVEVDL 220

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  107 bits (271), Expect = 6e-30
 Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 12/150 (8%)

Query: 1   TVADNIRYGP---QLRGKKLTENEVYKLLS---LADLDSSFLSKTGAEISVGQAQRVALA 54
           TV +N+   P   +   K     +  +LL    LAD   ++     A++S GQ QRVA+A
Sbjct: 93  TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY----PAQLSGGQQQRVAIA 148

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA +P+V+L DEPTSALDP     + DV+  L ++ GMT+++V+H +   + +AD V 
Sbjct: 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVI 207

Query: 115 LLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 143
            +  G+I+E   P +     K     +FL 
Sbjct: 208 FMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237

Length = 240

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  107 bits (270), Expect = 6e-30
 Identities = 45/113 (39%), Positives = 70/113 (61%)

Query: 11  QLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70
           +L  K+  +  V  LL    L    L++   E+S GQ QRVA+AR LA  P++L+ DEPT
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173

Query: 71  SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           SALD      I D+L KL+++ G+T++ ++H +  + +IAD V ++  G+IVE
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  107 bits (269), Expect = 6e-30
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 4/123 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T  +N+     L G    E      +LL    L    L+   +E+S GQ QRVA+AR LA
Sbjct: 98  TALENVELPLLLAGVPKKERRERAEELLERVGLGDR-LNHYPSELSGGQQQRVAIARALA 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N+P+++L DEPT  LD  + + + ++L +L K+ G TIV+V+H   ++   AD +  L +
Sbjct: 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRD 215

Query: 119 GEI 121
           G+I
Sbjct: 216 GKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  107 bits (269), Expect = 9e-30
 Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 6/140 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKL----LSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+ + P     +L+E E+ ++    L    L         AE+S G  +RVALAR 
Sbjct: 93  TVFENVAF-PLREHTRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARA 150

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA +PE+LL DEPT+ LDPI++  I+D++  LKK+ G+T +MV+H +     IAD + +L
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL 210

Query: 117 VNGEIVEVLKPDLLSEAKHP 136
            +G+IV    P+ L  +  P
Sbjct: 211 YDGKIVAEGTPEELRASDDP 230

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  107 bits (270), Expect = 6e-29
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 14/151 (9%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV DN+    +L G    E      E+ +L+ L+D    +     A++S GQ QRVA+AR
Sbjct: 98  TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY----PAQLSGGQKQRVAIAR 153

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA+ P+VLL DE TSALDP +T++I ++L  + ++ G+TIV+++H +  ++RI D V +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213

Query: 116 LVNGEIVE---VLKPDLLSEAKHPMALRFLQ 143
           +  G +VE   V   ++ S  KHP+   F+Q
Sbjct: 214 IDAGRLVEQGTVS--EVFSHPKHPLTREFIQ 242

Length = 343

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 7e-29
 Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 8/134 (5%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLA---DLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP++ G   KK  +  V K L  A   D     L      +S GQ QR+ +A
Sbjct: 120 SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EP+V+L+DEPTSALDPIST  +E+++ +LKK +  +I++V+H+++Q  RI+D   
Sbjct: 180 RCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY--SIIIVTHNMQQAARISDKTA 237

Query: 115 LLVNGEIVEVLKPD 128
             +NG + E    D
Sbjct: 238 FFLNGYVNEYDDTD 251

Length = 271

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  105 bits (264), Expect = 8e-29
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV DN+  G +LRGK   E      +LL L  L + F  K   ++S G  QRVA+AR LA
Sbjct: 88  TVLDNVALGLELRGKSKAEARERAKELLELVGL-AGFEDKYPHQLSGGMRQRVAIARALA 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P++LLLDEP  ALD ++ + ++D L++L ++   T+++V+H + +   +AD V +L N
Sbjct: 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206

Query: 119 --GEIVEVLKPDL 129
             G I E L+ DL
Sbjct: 207 RPGRIGEELEIDL 219

Length = 248

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  105 bits (265), Expect = 8e-29
 Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 5/146 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKL----LSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+ + P     KL E+ + +L    L L  L  +      +E+S G  +RVALAR 
Sbjct: 101 TVFENVAF-PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           +A +PE+L LDEPTS LDPIS   I++++ +L    G+T++MV+H +  +  IAD V +L
Sbjct: 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219

Query: 117 VNGEIVEVLKPDLLSEAKHPMALRFL 142
            +G+++    P+ L  +  P   +F 
Sbjct: 220 ADGKVIAEGTPEELLASDDPWVRQFF 245

Length = 263

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  104 bits (261), Expect = 2e-28
 Identities = 56/130 (43%), Positives = 85/130 (65%), Gaps = 8/130 (6%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP++ G    KKL E   +  K ++L D     L      +S GQ QR+ +A
Sbjct: 108 SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA  P+VLL+DEPTSALDP+ST+ IE++++KLK+K+  TIV+V+H+++Q  R++D   
Sbjct: 168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY--TIVIVTHNMQQAARVSDQTA 225

Query: 115 LLVNGEIVEV 124
               GE+VE 
Sbjct: 226 FFYMGELVEC 235

Length = 259

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  106 bits (266), Expect = 2e-28
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T+  N   GP+L G  ++  + +  +LL L  L+  +  +   E+S G  QRV LAR LA
Sbjct: 87  TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALA 145

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP++LL+DE  SALDP+   +++D L KL+     TIV ++H + +  RI D + ++  
Sbjct: 146 AEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205

Query: 119 GEIVEVLKPD 128
           GEIV+V  PD
Sbjct: 206 GEIVQVGTPD 215

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  103 bits (259), Expect = 2e-28
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 3/126 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+     + G      +    +LL +  L+   L K  +E+S GQ QRVA+AR L 
Sbjct: 99  TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N P+++L DEPT  LD  + + + ++L +L K+ G TI+MV+H   ++ + AD V  L +
Sbjct: 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKD 217

Query: 119 GEIVEV 124
           G+I E 
Sbjct: 218 GKIEEE 223

Length = 226

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  105 bits (265), Expect = 3e-28
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 1   TVADNIRYGPQLRGKKLTEN-----EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +NI +G +LRG    E      EV KLL L  L    L++   ++S GQ QRVALAR
Sbjct: 91  TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL----LNRKPLQLSGGQRQRVALAR 146

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L  +P+V LLDEP S LD      +   + KL ++ G T + V+H   +   +AD + +
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206

Query: 116 LVNGEIVEVLKP-DLLSEAKHPMALRFL 142
           + +G I +V  P +L     +     F+
Sbjct: 207 MNDGRIQQVGTPLELYERPANLFVAGFI 234

Length = 338

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (258), Expect = 4e-28
 Identities = 55/136 (40%), Positives = 91/136 (66%), Gaps = 8/136 (5%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP++ G    K+L +      K  +L D     L K+  ++S GQ QR+ +A
Sbjct: 100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+A +P+V+L+DEPTSALDPIST  IED++V+LKK++  TIV+V+H+++Q  R++D   
Sbjct: 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY--TIVIVTHNMQQASRVSDYTA 217

Query: 115 LLVNGEIVEVLKPDLL 130
             + G+++E  K + +
Sbjct: 218 FFLMGDLIEFNKTEKI 233

Length = 251

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 3e-27
 Identities = 51/130 (39%), Positives = 83/130 (63%), Gaps = 8/130 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG ++ G   K      V + L   +L D     L ++   +S GQ QR+ +A
Sbjct: 102 SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEVLL+DEP SALDPI+TQ IE+++ +LK ++  TI++V+H+++Q  R++DV  
Sbjct: 162 RALAVEPEVLLMDEPASALDPIATQKIEELIHELKARY--TIIIVTHNMQQAARVSDVTA 219

Query: 115 LLVNGEIVEV 124
               G+++EV
Sbjct: 220 FFYMGKLIEV 229

Length = 253

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (254), Expect = 3e-27
 Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI YGP+L G   KK  E  V K L   +L D  S  L K    +S GQ QR+ +A
Sbjct: 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RTLA EPE+LLLDEPTSALDP +T  IED++ +L+  +  TI++V+H+++Q  R++D   
Sbjct: 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY--TIMIVTHNMQQASRVSDYTM 252

Query: 115 LLVNGEIVE 123
               G +VE
Sbjct: 253 FFYEGVLVE 261

Length = 286

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 15  KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74
           K+     V +LL    L   FL +   E+S GQ QR+ +AR LA  P++++ DEP SALD
Sbjct: 82  KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141

Query: 75  PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEA 133
                 I ++L  L+++ G+T + +SH +  ++ I+D + ++  G+IVE+   + + S  
Sbjct: 142 VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201

Query: 134 KHP 136
            HP
Sbjct: 202 LHP 204

Length = 268

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  102 bits (257), Expect = 4e-27
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 5/132 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TVADNI +G ++R ++ +E E    V +LL L  L      +  A++S GQ QRVALAR 
Sbjct: 93  TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-EGLADRYPAQLSGGQRQRVALARA 151

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA EP+VLLLDEP  ALD    + +   L KL  + G+T V V+H  ++   +AD V +L
Sbjct: 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL 211

Query: 117 VNGEIVEVLKPD 128
             G I +V  PD
Sbjct: 212 NQGRIEQVGPPD 223

Length = 345

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (252), Expect = 4e-27
 Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 7/128 (5%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALAR 55
           ++ DN+ YGP++ G  KK  +  V   L   +L D  S  L      +S GQ QR+ +AR
Sbjct: 108 SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
           TLA +P+++L DEPTSALDPIST  IED+++ LKK +  TIV+V+H+++Q  RI+D    
Sbjct: 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDY--TIVIVTHNMQQAARISDYTGF 225

Query: 116 LVNGEIVE 123
            + GE++E
Sbjct: 226 FLMGELIE 233

Length = 258

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 7e-27
 Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YG ++ G+   +       E  K  +L D     L K+   +S GQ QR+ +A
Sbjct: 99  SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+A  PEV+L+DEP SALDPIST  IED++ KLK+ +  TIV+V+H+++Q  R++    
Sbjct: 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDY--TIVIVTHNMQQATRVSKYTS 216

Query: 115 LLVNGEIVE 123
             +NGEI+E
Sbjct: 217 FFLNGEIIE 225

Length = 250

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (251), Expect = 8e-27
 Identities = 53/131 (40%), Positives = 83/131 (63%), Gaps = 10/131 (7%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSF---LSKTGAEISVGQAQRVAL 53
           ++ DNI +G +L  +KL+  E    V   L+ A L +     L ++G  +S GQ QR+ +
Sbjct: 109 SIYDNIAFGVRLF-EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR +A  PEVLLLDEP SALDPIST  IE+++ +LK+ +  T+V+V+H+++Q  R +D  
Sbjct: 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDY--TVVIVTHNMQQAARCSDYT 225

Query: 114 CLLVNGEIVEV 124
             +  GE++E 
Sbjct: 226 AFMYLGELIEF 236

Length = 260

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (251), Expect = 8e-27
 Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 12/129 (9%)

Query: 4   DNIRYGPQLRG---KKLTENEVYKLLSLADL-----DSSFLSKTGAEISVGQAQRVALAR 55
           +N+ YG +L+G   +++ +  V + L  A L     D   L +    +S GQ QR+ +AR
Sbjct: 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR--LHENAFGLSGGQQQRLVIAR 181

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            +A EPEVLLLDEPTSALDPIST  IE+++ +LK K+  TIV+V+H+++Q  R++D    
Sbjct: 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKY--TIVIVTHNMQQAARVSDYTAF 239

Query: 116 LVNGEIVEV 124
           +  G++VE 
Sbjct: 240 MYMGKLVEY 248

Length = 272

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 50/130 (38%), Positives = 81/130 (62%), Gaps = 8/130 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG +L+G   K++ +  V K L   S+ D     L  +   +S GQ QRV +A
Sbjct: 101 SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA  P+++LLDEPTSALDPIS   IE+ L+ LK  +  T+++V+ S++Q  RI+D   
Sbjct: 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTG 218

Query: 115 LLVNGEIVEV 124
             ++G+++E 
Sbjct: 219 FFLDGDLIEY 228

Length = 252

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 99.6 bits (249), Expect = 2e-26
 Identities = 44/133 (33%), Positives = 78/133 (58%), Gaps = 9/133 (6%)

Query: 1   TVADNIRYGPQLRGKKLTEN-----EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +N+ +G +++G    E      E  +L+ L      +  K   E+S G  QRV LAR
Sbjct: 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----WEHKYPDELSGGMQQRVGLAR 173

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA +P++LL+DE  SALDP+  + ++D L++L+ +   TIV ++H + +  R+ D + +
Sbjct: 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI 233

Query: 116 LVNGEIVEVLKPD 128
           + +G +V+V  P+
Sbjct: 234 MKDGRLVQVGTPE 246

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 52/130 (40%), Positives = 82/130 (63%), Gaps = 9/130 (6%)

Query: 1   TVADNIRYGPQLRG-----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           ++ DN+ YGP+L G     KKL E   +    + L +     L  +  E+S GQ QR+ +
Sbjct: 101 SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR +A +P +LL+DEP SALDP++T  IE+++ +LKK    TI++V+HS+KQ ++++D V
Sbjct: 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN--FTIIVVTHSMKQAKKVSDRV 218

Query: 114 CLLVNGEIVE 123
               +G IVE
Sbjct: 219 AFFQSGRIVE 228

Length = 251

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  102 bits (256), Expect = 3e-26
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALART 56
           T+ D IR   +L G   +        +LL    L           ++S G  QRV +A  
Sbjct: 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA +P++L+ DEPT+ALD  +   I D+L  L+++ GM ++ ++H +  +  +AD V ++
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM 228

Query: 117 VNGEIVEVLKP-DLLSEAKHPM 137
             GEIVE     ++LS  +HP 
Sbjct: 229 YKGEIVETGPTEEILSNPQHPY 250

Length = 539

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (249), Expect = 3e-26
 Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ YGP+  G   +K+ E  V K L   +L D     L K G  +S GQ QR+ +A
Sbjct: 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R +A EPEVLL+DEPTSALDPI+T  IE+++++LKKK+  +I++V+HS+ Q QRI+D   
Sbjct: 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY--SIIIVTHSMAQAQRISDETV 295

Query: 115 LLVNGEIVE 123
               G I E
Sbjct: 296 FFYQGWIEE 304

Length = 329

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.4 bits (245), Expect = 4e-26
 Identities = 54/129 (41%), Positives = 85/129 (65%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG + +G   KK+ +  V + L   +L D     L      +S GQ QR+ +A
Sbjct: 98  SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+A EP+V+L+DEPTSALDPI+T  IE+++ +LKK +  TIV+V+HS++Q +RI+D   
Sbjct: 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY--TIVIVTHSMQQARRISDRTA 215

Query: 115 LLVNGEIVE 123
             + GE+VE
Sbjct: 216 FFLMGELVE 224

Length = 249

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  100 bits (252), Expect = 4e-26
 Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 9/133 (6%)

Query: 1   TVADNIRYGPQLRGKKLTEN-----EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +N+ +G +++G    E      E  +L+ L      + +    E+S G  QRV LAR
Sbjct: 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN----ELSGGMQQRVGLAR 177

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LAN+P++LL+DE  SALDP+    ++D L++L+ K   TIV ++H + +  RI D + +
Sbjct: 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237

Query: 116 LVNGEIVEVLKPD 128
           + +GEIV+V  P+
Sbjct: 238 MKDGEIVQVGTPE 250

Length = 386

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.2 bits (244), Expect = 5e-26
 Identities = 58/136 (42%), Positives = 85/136 (62%), Gaps = 8/136 (5%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI YGP++ G    KKL E   +  K  +L +     L+     +S GQ QR+ +A
Sbjct: 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RTLA EP V+L+DEPTSALDPIST  IE++++ LK+ +  TI++V+H+++Q  RI+D   
Sbjct: 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTA 220

Query: 115 LLVNGEIVEVLKPDLL 130
             +NG I E    D L
Sbjct: 221 FFLNGCIEEESSTDEL 236

Length = 254

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YGP++ G   KK  +  V K L   +L D     L  +   +S GQ QR+ +A
Sbjct: 102 SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RTLA  PEV+L+DEP SALDPI+T  IED++  LKK++  T+++V+H+++Q  R++D   
Sbjct: 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY--TVIIVTHNMQQAARVSDYTG 219

Query: 115 LLVNGEIVE 123
            +  G+++E
Sbjct: 220 FMYLGKLIE 228

Length = 253

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  100 bits (252), Expect = 1e-25
 Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 22  VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 81
           V +LL L  L   FL +   E+S GQ QRVA+AR LA EP++L+LDEP SALD      +
Sbjct: 409 VAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468

Query: 82  EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALR 140
            ++L  L+++ G+T + +SH +  ++ IAD V ++ +G IVE      +    +HP   +
Sbjct: 469 LNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK 528

Query: 141 FLQ 143
            L 
Sbjct: 529 LLA 531

Length = 539

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 2   VADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF--LSKTGAEISVGQAQRVALARTLAN 59
           +A+ +R   +   KK  +    +LL L  +      L     E+S G  QRV +A  LA 
Sbjct: 111 IAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL 170

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            P++L+ DEPT+ALD      I D+L +L+++ G  +++++H +  +  IAD V ++  G
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230

Query: 120 EIVEVLKP-DLLSEAKHP 136
            IVE     ++    KHP
Sbjct: 231 RIVEEGPVEEIFKNPKHP 248

Length = 316

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.4 bits (242), Expect = 1e-25
 Identities = 54/129 (41%), Positives = 81/129 (62%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLADL---DSSFLSKTGAEISVGQAQRVALA 54
           +V DN+ YG ++ G   K+L +  V + L  A +       L +     S GQ QR+ +A
Sbjct: 100 SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA  P+V+LLDEPTSALDPIS+  IE+ L++L  KH  T +MV+H+++Q  RI+D   
Sbjct: 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--KHQYTFIMVTHNLQQAGRISDQTA 217

Query: 115 LLVNGEIVE 123
            L+NG+++E
Sbjct: 218 FLMNGDLIE 226

Length = 251

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 9/127 (7%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV D + +G +  G    E      E  +L+ L +L    L +    +S GQ QRVA+A 
Sbjct: 96  TVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL----LDRPPFNLSGGQKQRVAIAG 151

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA  PE+LLLDEPT+ LDP   + + ++L KLK++ G TI++V+H ++ +   AD V +
Sbjct: 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211

Query: 116 LVNGEIV 122
           L +G+I+
Sbjct: 212 LDDGKIL 218

Length = 235

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 94.6 bits (236), Expect = 1e-25
 Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVALAR L   P++LLLDEPTS LDP S + + ++L +L ++ G T+++V+H
Sbjct: 80  QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTH 138

Query: 102 SIKQIQRIADVVCLLVNGE 120
             +  +  AD V +L +G+
Sbjct: 139 DPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 94.4 bits (236), Expect = 2e-25
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 39  TGAEI---SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           T  E    S G  QR+ALA+ L ++PE+L+LDEPTS LDP S +   ++L +LKK+ G T
Sbjct: 89  TVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKT 147

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEI 121
           I++ SH +++ +R+ D V +L NG I
Sbjct: 148 ILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 97.7 bits (244), Expect = 4e-25
 Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 4/127 (3%)

Query: 1   TVADNIRYGPQLRGKKLTEN---EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           TV +N+ +G ++R K         V + L L  L+  F  +   ++S GQ QRVALAR L
Sbjct: 93  TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARAL 151

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
             EP+VLLLDEP SALD    + +   L +L+++ G+T V V+H  ++   ++D + ++ 
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211

Query: 118 NGEIVEV 124
           +G I +V
Sbjct: 212 DGRIEQV 218

Length = 352

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 96.6 bits (241), Expect = 4e-25
 Identities = 45/124 (36%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 1   TVADNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  +I +GP   G    + +    +++ L  L    L+++  E+S GQ +RVA+A  LA
Sbjct: 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EPEVL+LDEPT+ LDP   + + ++  KL K+ G+T V+V+HS++   R AD + ++  
Sbjct: 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK 221

Query: 119 GEIV 122
           G + 
Sbjct: 222 GTVF 225

Length = 290

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 95.9 bits (239), Expect = 5e-25
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 8/126 (6%)

Query: 4   DNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           +NI +  +  G    K L E      K  +L D     L K+   +S GQ QR+ +AR +
Sbjct: 119 ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A +P++LL+DEP SALDPIST  +E+ + +LKK +  TI++V+H+++Q  R +D      
Sbjct: 179 AVKPDILLMDEPASALDPISTMQLEETMFELKKNY--TIIIVTHNMQQAARASDYTAFFY 236

Query: 118 NGEIVE 123
            G+++E
Sbjct: 237 LGDLIE 242

Length = 267

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.4 bits (237), Expect = 6e-25
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLA---DLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG +L G   K + +  V   L  A   D     L ++   +S GQ QRV +A
Sbjct: 101 SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA +P+V+LLDEPTSALDPIS+  IE++L++L+ ++  TI++V+HS+ Q  RI+D   
Sbjct: 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY--TIILVTHSMHQASRISDKTA 218

Query: 115 LLVNGEIVE 123
             + G ++E
Sbjct: 219 FFLTGNLIE 227

Length = 252

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 94.5 bits (235), Expect = 8e-25
 Identities = 44/124 (35%), Positives = 70/124 (56%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV DN+ +  Q+R ++        LL+   L  S L+K   E+S G+ QR+AL R L   
Sbjct: 92  TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFM 151

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P++LLLDE TSALD  + +NIE+++ +  ++  + ++ ++H   Q  R AD V  L  G 
Sbjct: 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211

Query: 121 IVEV 124
             E+
Sbjct: 212 AGEM 215

Length = 223

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 46/115 (40%), Positives = 78/115 (67%), Gaps = 6/115 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEV----YKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           ++ DNI YG ++ G K   +E+     +  +L D     L ++G  +S GQ QR+ +AR 
Sbjct: 106 SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
           +A +PEV+L+DEP SALDPIST  IE+++ +LK+++  TI++V+H+++Q  R++D
Sbjct: 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSD 218

Length = 264

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 93.3 bits (233), Expect = 1e-24
 Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 4/122 (3%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV + + +G +  G  ++  E  V + L L  L+     ++   +S GQ QRVA+A  LA
Sbjct: 92  TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLA 150

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            +P++LLLDEPT+ LDP   + + ++L KLK + G TI++V+H +  +  +AD V +L +
Sbjct: 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLED 209

Query: 119 GE 120
           G+
Sbjct: 210 GK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 93.1 bits (232), Expect = 3e-24
 Identities = 46/130 (35%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +NI +G +L+   K   +  V + L L  L+  + ++  +++S GQ QRVA+AR L 
Sbjct: 88  TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALV 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           NEP+VLLLDEP  ALD    ++++  L +L+K+ G+T V V+H  ++   ++D + ++  
Sbjct: 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206

Query: 119 GEIVEVLKPD 128
           G+I ++  P+
Sbjct: 207 GKIQQIGTPE 216

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 92.0 bits (229), Expect = 6e-24
 Identities = 56/145 (38%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TVA NI  G  P L+       +V    +   L   FL +   E+S GQ QRVALAR L 
Sbjct: 87  TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLV 145

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            E  +LLLDEP SALDP     +  ++ +L  +  MT++MV+H  +   RIAD V  L N
Sbjct: 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDN 205

Query: 119 GEIVEVLK-PDLLSEAKHPMALRFL 142
           G I       +LLS      AL  +
Sbjct: 206 GRIAAQGSTQELLSGKASAAALLGI 230

Length = 231

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 92.2 bits (230), Expect = 1e-23
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 6/98 (6%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
            E+S G+ QRV +AR LA E  +LLLDEPTS LD      + ++L  L ++ G+T+VMV 
Sbjct: 137 DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL 196

Query: 101 HSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSE 132
           H +    R AD + LL +G+IV      EVL  + L E
Sbjct: 197 HDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLRE 234

Length = 258

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 89.7 bits (224), Expect = 1e-23
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 15  KKLTENEVYKLLSLADLDSSFLSKTGAE--ISVGQAQRVALARTLANEPEVLLLDEPTSA 72
           + L    + K ++    D    S T  E  +S GQ QR+A+AR L  +P +L+LDE TSA
Sbjct: 67  RDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSA 126

Query: 73  LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           LDP +   I + L  L K  G T+++++H +  I+  AD + +L +G 
Sbjct: 127 LDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 91.5 bits (228), Expect = 2e-23
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 13  RGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA 72
           R  K  + +V + L    +      +   E+S GQ QRV LAR LA  P++LLLDEP + 
Sbjct: 111 RLNKKDKEKVDEALERVGM-EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169

Query: 73  LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIV------EVL 125
           +D    + I D+L +L+++ G T++MV+H +  +    D V+CL  N  ++      EVL
Sbjct: 170 VDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL--NRHLIASGPPEEVL 226

Query: 126 KPDLLSEAKHPMALRFLQLSG 146
             + L +A        L    
Sbjct: 227 TEENLEKAFGGSLAHALAGYR 247

Length = 254

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 90.3 bits (225), Expect = 2e-23
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 5/124 (4%)

Query: 1   TVADNIRYGP-QLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           TV +NI   P +++G  K   E    +LL    L +       A++S GQ QRVA+AR L
Sbjct: 92  TVLENITLAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARAL 150

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A  P+V+L DEPTSALDP     + DV+  L ++ GMT+V+V+H +   + +AD V  + 
Sbjct: 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMD 209

Query: 118 NGEI 121
           +G I
Sbjct: 210 DGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 91.6 bits (228), Expect = 2e-23
 Identities = 45/127 (35%), Positives = 79/127 (62%), Gaps = 7/127 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLD-SSFLSKTGAEISVGQAQRVALAR 55
           T+  +I +GP   G  L+E E    V + +++  LD   +  K+  E+S GQ +RVA+A 
Sbjct: 100 TIEKDIAFGPINLG--LSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            +A EP++L+LDEPT+ LDP     I + + +L K++ MTI++VSHS++ + ++AD + +
Sbjct: 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV 217

Query: 116 LVNGEIV 122
           +  G+  
Sbjct: 218 MNKGKCE 224

Length = 287

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 90.6 bits (226), Expect = 3e-23
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 1   TVADNIRYGP-QLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
           TV +N+  G    R K+  E ++ ++  L        ++    +S G+ Q +A+AR L +
Sbjct: 94  TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS 153

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            P++LLLDEP+  L P   + I + + +L+K+ GMTI++V  + +    IAD   +L NG
Sbjct: 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213

Query: 120 EIVE 123
            IV 
Sbjct: 214 RIVL 217

Length = 237

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.4 bits (227), Expect = 3e-23
 Identities = 48/128 (37%), Positives = 82/128 (64%), Gaps = 7/128 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEV----YKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           ++ DN+ YG +++G     +E      +  +L D     L  +G ++S GQ QR+ +AR 
Sbjct: 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCL 115
           +A +PEV+L+DEP SALDP++T  IED++ +L +++  T+V+V+H+++Q  RI+D     
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVF 252

Query: 116 LVNGEIVE 123
           L  GE+VE
Sbjct: 253 LTGGELVE 260

Length = 285

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.2 bits (226), Expect = 3e-23
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDSSFLSKTGA---EISVGQAQRVALA 54
           ++ +N+ YG ++RG K   + E  V   L  A L      + G     +S GQ QR+ +A
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA +PE+LL DEPTSALDPI+T +IE+++  LK K  +TI++V+H+++Q  R++D   
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKNK--VTILIVTHNMQQAARVSDYTA 231

Query: 115 LLVNGEIVE 123
            +  GE++E
Sbjct: 232 YMYMGELIE 240

Length = 265

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 90.9 bits (226), Expect = 3e-23
 Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 9/131 (6%)

Query: 1   TVADNIRYGPQL----RGKKLTENEVYKLLSLADLDSSF---LSKTGAEISVGQAQRVAL 53
           ++ +N+ YGP++    R K   +  V   L  A L       L + G  +S GQ QR+ +
Sbjct: 115 SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR +A  PEV+L+DEP SALDPI+T  +E+++ +L++ +  TIV+V+HS++Q  R++   
Sbjct: 175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNY--TIVIVTHSMQQAARVSQRT 232

Query: 114 CLLVNGEIVEV 124
                G +VEV
Sbjct: 233 AFFHLGNLVEV 243

Length = 267

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 90.9 bits (226), Expect = 3e-23
 Identities = 52/117 (44%), Positives = 77/117 (65%), Gaps = 8/117 (6%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSF---LSKTGAEISVGQAQRVALA 54
           ++ DN+  G +L G   KK  +  V K L  A+L +     L K G  +S GQ QR+ +A
Sbjct: 101 SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
           R +A EP+VLL+DEP SALDPIST  IED++ +LK+ +  TIV+V+H+++Q  R++D
Sbjct: 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY--TIVIVTHNMQQAARVSD 215

Length = 258

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 92.3 bits (229), Expect = 4e-23
 Identities = 55/146 (37%), Positives = 92/146 (63%), Gaps = 4/146 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  N+    +L    K   + +V +LL+L  L     S   + +S GQ QRVA+AR LA
Sbjct: 98  TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIARALA 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           + P+VLL DE TSALDP +TQ+I ++L ++ ++ G+TI++++H +  ++RI D V ++ N
Sbjct: 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216

Query: 119 GEIVEV-LKPDLLSEAKHPMALRFLQ 143
           GE++E     ++ S  K P+A +F++
Sbjct: 217 GELIEQGTVSEIFSHPKTPLAQKFIR 242

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.5 bits (224), Expect = 4e-23
 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+ +GP++ G     +L E   +  +  +L D     L K+G  +S GQ QR+ +A
Sbjct: 100 SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EPEV+L+DEP SALDP+ST  IE+++ +LK+ +  TI +V+H+++Q  R +D   
Sbjct: 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNY--TIAIVTHNMQQAARASDWTG 217

Query: 115 LLVNGEIVE 123
            L+ G++VE
Sbjct: 218 FLLTGDLVE 226

Length = 251

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.5 bits (224), Expect = 5e-23
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG ++ G K          E  K  +L D     L ++   +S GQ QR+ +A
Sbjct: 99  SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R +A  P VLL+DEP SALDPIST  +E+++ +LKK +  TIV+V+H+++Q  R++D   
Sbjct: 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDY--TIVIVTHNMQQAARVSDKTA 216

Query: 115 LLVNGEIVE 123
               GE+VE
Sbjct: 217 FFYMGEMVE 225

Length = 250

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.1 bits (223), Expect = 6e-23
 Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           L      +S GQ QR+ +AR LA EPE+LL+DEPTSALDP ST  IED++  LKK    T
Sbjct: 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV--TT 199

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           I++V+H++ Q  R++D     + G++VE
Sbjct: 200 IIIVTHNMHQAARVSDTTSFFLVGDLVE 227

Length = 252

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.4 bits (224), Expect = 7e-23
 Identities = 44/93 (47%), Positives = 67/93 (72%), Gaps = 7/93 (7%)

Query: 31  LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 90
           L SS LS +G     GQ QR+ +ARTLA +P VLLLDEP SALDPIS   IE+++ +LK+
Sbjct: 158 LHSSALSLSG-----GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE 212

Query: 91  KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           ++  +I++V+H+++Q  R++D     +NG++VE
Sbjct: 213 EY--SIIIVTHNMQQALRVSDRTAFFLNGDLVE 243

Length = 268

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 89.9 bits (223), Expect = 8e-23
 Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 9/131 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENEV-------YKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           T+ DN+  G +L G   ++ E+        K  +L D     L+   + +S GQ QR+ +
Sbjct: 101 TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR LA +P++LL+DEPT+ +DP+ T  IE++L +LKK++  TIV+V+HS  Q  R++D V
Sbjct: 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYV 218

Query: 114 CLLVNGEIVEV 124
             L  G+++EV
Sbjct: 219 AFLYLGKLIEV 229

Length = 253

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.2 bits (224), Expect = 8e-23
 Identities = 44/88 (50%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           L+++G  +S GQ QR+ +ART+A EPEV+L+DEP SALDPIST  IE+ + +LKK    T
Sbjct: 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF--T 205

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           IV+V+H+++Q  R++D+     N E VE
Sbjct: 206 IVIVTHNMQQAVRVSDMTAFF-NAEEVE 232

Length = 269

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 87.9 bits (219), Expect = 9e-23
 Identities = 40/81 (49%), Positives = 52/81 (64%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G+ QRV LAR LA EP +LLLDEPTS LD      + ++L +L ++ G T+VMV H
Sbjct: 97  ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156

Query: 102 SIKQIQRIADVVCLLVNGEIV 122
            +    R AD V LL +G IV
Sbjct: 157 DLNLAARYADRVILLKDGRIV 177

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 89.3 bits (221), Expect = 1e-22
 Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 8/129 (6%)

Query: 1   TVADNIRYGPQLRG--KKLTENEV----YKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DN+  G +L G   +   +E+     K ++L D     L     E+S GQ QR+ +A
Sbjct: 101 SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+A +PEV+L+DEP SALDPIST  IE+++ +LK+K+  TI++V+H+++Q  R++D   
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY--TIIIVTHNMQQAARVSDYTA 218

Query: 115 LLVNGEIVE 123
               G++VE
Sbjct: 219 FFYMGDLVE 227

Length = 252

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 7/127 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEV--YKLLSLADLDS--SFLSKTGAEISVGQAQRVALART 56
           ++ +NI + P+  G K   +E+    L   A  +     L + G  +S GQ QR+ +AR 
Sbjct: 116 SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           +A +P+VLL+DEP SALDPIST+ +E++ ++LK+++  TI+MV+H+++Q  R+AD     
Sbjct: 176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY--TIIMVTHNMQQASRVADWTAFF 233

Query: 117 VNGEIVE 123
            N EI E
Sbjct: 234 -NTEIDE 239

Length = 274

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 6/116 (5%)

Query: 1   TVADNIRYGPQL-RGKKLTENEVYKLL---SLADLDSSFLSKTGAEISVGQAQRVALART 56
           ++ DN+ +G +L R K    + V   L   +L D     L  +G  +S GQ QR+ +AR 
Sbjct: 104 SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112
           +A EPEVLLLDEP SALDPI+T+ +E+++V+LKK +  TI +V+H+++Q  R+AD 
Sbjct: 164 IATEPEVLLLDEPCSALDPIATRRVEELMVELKKDY--TIALVTHNMQQAIRVADT 217

Length = 261

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.4 bits (219), Expect = 3e-22
 Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 10/150 (6%)

Query: 1   TVADNIRYGPQL----RGKKLTENEVYKLLSLADLDSSFLSKTGA---EISVGQAQRVAL 53
           ++ +N+  G +L    + KK  +  V   L  A L      +  A   ++S GQ QR+ +
Sbjct: 98  SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR LA +PEVLL DEPT+ LDP +T  IE + ++LKK   MTIV+V+H  +Q  RI+D V
Sbjct: 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYV 215

Query: 114 CLLVNGEIVEV-LKPDLLSEAKHPMALRFL 142
             L  G+IVE     ++ +  +H +  +++
Sbjct: 216 AFLYKGQIVEWGPTREVFTNPRHELTEKYV 245

Length = 250

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 87.0 bits (216), Expect = 4e-22
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
            V D + Y  QL+G K  E    + + L   +L S + +K   E+S G  Q+V     + 
Sbjct: 86  KVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-SEYANKRVEELSKGNQQKVQFIAAVI 144

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           ++PE+L+LDEP S LDP++ + ++DV+ +L +  G T+++ +H ++ ++ + D V LL  
Sbjct: 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK 203

Query: 119 GEIV 122
           G  V
Sbjct: 204 GRAV 207

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 85.6 bits (213), Expect = 4e-22
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +SVG+ Q V +AR LA    +L+LDEPT+AL P   + +  V+ +L+ + G+ ++ +SH 
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141

Query: 103 IKQIQRIADVVCLLVNGEIV 122
           + ++  IAD V +L +G +V
Sbjct: 142 LDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 89.7 bits (222), Expect = 6e-22
 Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLAN 59
           TV DN  +G +L G    E     L +L  +   ++      E+S G  QRV LAR LA 
Sbjct: 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            P++LL+DE  SALDP+    ++D LVKL+ KH  TIV +SH + +  RI D + ++ NG
Sbjct: 182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241

Query: 120 EIVEVLKPD 128
           E+V+V  PD
Sbjct: 242 EVVQVGTPD 250

Length = 400

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 88.9 bits (221), Expect = 8e-22
 Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TVADNI YG  L+ + +   E    V +LL L  L  S   K   ++S GQ QRVALAR 
Sbjct: 92  TVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGS-ERKYPGQLSGGQQQRVALARA 148

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA  P +LLLDEP SALD    +++   + +L+++ G+T +MV+H  ++   +AD + ++
Sbjct: 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVM 208

Query: 117 VNGEIVEVLKP 127
            +G I +V  P
Sbjct: 209 NHGVIEQVGTP 219

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.0 bits (218), Expect = 9e-22
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 23/143 (16%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD-------------------SSFLSKTGA 41
           ++ +NI YGP+  G  +    + +LL   D D                   +  L     
Sbjct: 141 SIRENISYGPRKHGD-INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S GQ QR+ +AR LA +PEV+L+DEP SALDPI+T  IED++ +L +++  T+V+V+H
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTH 257

Query: 102 SIKQIQRIAD-VVCLLVNGEIVE 123
           +++Q  RI+D     L  GE+VE
Sbjct: 258 NMQQAARISDQTAVFLTGGELVE 280

Length = 305

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 87.4 bits (216), Expect = 9e-22
 Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 10/130 (7%)

Query: 1   TVADNIRYGPQLRG-------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           ++ DNI Y  +  G       KK+ E  + K+    ++    L+   +++S GQ QR+ +
Sbjct: 106 SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTI 164

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR LA +P+VLL+DEPTS +D +++Q IE ++ +LK +  + IV+VSH+ +Q+ R+AD V
Sbjct: 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYV 222

Query: 114 CLLVNGEIVE 123
             L NGE+VE
Sbjct: 223 AFLYNGELVE 232

Length = 257

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 1   TVADNIRYGPQLR--GKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV DNI +G ++R   K   +  V +LL L  L      +   ++S GQ QRVALAR LA
Sbjct: 88  TVRDNIAFGLEIRKHPKAKIKARVEELLELVQL-EGLGDRYPNQLSGGQRQRVALARALA 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP+VLLLDEP  ALD    + +   L KL  +  +T V V+H  ++   +AD + ++ N
Sbjct: 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSN 206

Query: 119 GEIVEVLKPDLLSEA-KHPMALRFL 142
           G+I ++  PD + +   +P  + FL
Sbjct: 207 GKIEQIGSPDEVYDHPANPFVMSFL 231

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 18/153 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT----------GAEISVGQAQR 50
           T+ +NI     L     ++ E+   L  A L   F+ K           GA +S GQAQR
Sbjct: 410 TIRENIL----LARPDASDEEIIAALDQAGL-LEFVPKPDGLDTVIGEGGAGLSGGQAQR 464

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +ALAR L +   +LLLDEPT+ LD  + Q I   L +L K    T+++++H ++     A
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-A 521

Query: 111 DVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
           D + +L NG +VE    + LSE +   A    Q
Sbjct: 522 DRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554

Length = 559

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 19/141 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           T+A+NIRYG        T+ EV +    A++   F+              G+++S GQ Q
Sbjct: 92  TIAENIRYGK----PDATDEEVEEAAKKANIHD-FIMSLPDGYDTLVGERGSQLSGGQKQ 146

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L   P++LLLDE TSALD  S + +++ L +  K  G T ++++H +  I+  
Sbjct: 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN- 203

Query: 110 ADVVCLLVNGEIVEVLKPDLL 130
           AD++ +L NG++VE    D L
Sbjct: 204 ADLIAVLQNGQVVEQGTHDEL 224

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 3/124 (2%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  N+  G  P L+        +   L+   L      +   E+S G+ QRVALAR L 
Sbjct: 86  TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLV 144

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            +  VLLLDEP +ALDP     + D+++ L  +  MT++MV+H  +  +R+A  V  L N
Sbjct: 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204

Query: 119 GEIV 122
           G I 
Sbjct: 205 GRIA 208

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.8 bits (213), Expect = 3e-21
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S GQ QRVA+AR L  +P+++L DEP ++LDP S + + D+L  + ++ G+T+++  H
Sbjct: 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
            +   ++ AD +  L  G IV       L++  
Sbjct: 207 QVDLAKKYADRIIGLKAGRIVFDGPASELTDEA 239

Length = 258

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 10/134 (7%)

Query: 1   TVADNIRYGPQL-RGKKLTEN-----EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           TV DN+   P L  G    E      E+  ++ LAD          A++S GQ QRVA+A
Sbjct: 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM----PAQLSGGQQQRVAIA 158

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA  P+V+L DE TSALDP     + +V+ +L  +H +T+++V+H +   +  AD VC
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218

Query: 115 LLVNGEIVEVLKPD 128
               G IVE  KPD
Sbjct: 219 FFDKGRIVEQGKPD 232

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 48/130 (36%), Positives = 80/130 (61%), Gaps = 9/130 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE-------VYKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           ++ +NI Y P+L G    ++E         + + L +     L +    +S GQ QR+ +
Sbjct: 94  SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR LA +P++LLLDEPTSALDPIS+  IE++L +L   H ++++MV+H+++Q +R+AD  
Sbjct: 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL--SHNLSMIMVTHNMQQGKRVADYT 211

Query: 114 CLLVNGEIVE 123
                GE++E
Sbjct: 212 AFFHLGELIE 221

Length = 246

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 84.4 bits (210), Expect = 4e-21
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 9/136 (6%)

Query: 1   TVADNIRYGPQLRGK---KLTENEVYKLLS-LADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+  G   R +   K     VY+L   L +       +    +S G+ Q +A+AR 
Sbjct: 91  TVEENLLLGAYARRRAKRKARLERVYELFPRLKE----RRKQLAGTLSGGEQQMLAIARA 146

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           L + P++LLLDEP+  L P   + I + + +L+ + G+TI++V  + +    IAD   +L
Sbjct: 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVL 205

Query: 117 VNGEIVEVLKPDLLSE 132
             G +V       L  
Sbjct: 206 ERGRVVLEGTAAELLA 221

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 84.3 bits (209), Expect = 5e-21
 Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
            V +N+ +G + +  +     V +LL L  LD   L++  A++S G+ QRVALAR LA +
Sbjct: 91  NVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQ 149

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PE+LLLDEP SALD      +   L ++KK   + ++ V+H + + + +AD + ++ +G 
Sbjct: 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209

Query: 121 IV 122
           + 
Sbjct: 210 LQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 83.7 bits (208), Expect = 6e-21
 Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S GQ QRV LAR L  +P++LLLDEP + +DP + ++I ++L +L+++ GMTI++V+H
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTH 190

Query: 102 SIKQIQRIADVVCLLVNGEIV 122
            +  +    D V LL+N  +V
Sbjct: 191 DLGLVLEYFDRV-LLLNRTVV 210

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 86.9 bits (216), Expect = 7e-21
 Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 4/127 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV   I  G ++   KL+  E    V + L    LD +  ++   E S GQ QR+A+AR 
Sbjct: 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARA 440

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           L  +PE++LLDEPTSALD      + D+L  L++KHG++ + +SH +  ++ +   V ++
Sbjct: 441 LILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500

Query: 117 VNGEIVE 123
            +G+IVE
Sbjct: 501 RDGKIVE 507

Length = 534

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 84.3 bits (209), Expect = 7e-21
 Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 10/148 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV  NI YG + R     E      E+ ++L +  L    L++    +S G+ QRVA+AR
Sbjct: 87  TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL----LNRKPETLSGGEQQRVAIAR 142

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L   P++LLLDEP SALD  + + + + L K++K+ G+T++ V+H  ++   +AD V +
Sbjct: 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI 202

Query: 116 LVNGEIVEVLKP-DLLSEAKHPMALRFL 142
           ++NG++++V KP ++  + K+     FL
Sbjct: 203 MLNGKLIQVGKPEEVFKKPKNEFVAEFL 230

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 2   VADNIRYGPQLRGKKLTENEVYKLLSLADLD--SSFLSKTGAEISVGQAQRVALARTLAN 59
           +A+ +R    L           +LL L  +      L     E+S GQ QRV +A  LAN
Sbjct: 116 LAEVLRLHRGLSRAAARA-RALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174

Query: 60  EPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           EP++L+ DEPT+ALD ++ Q  I D+L +L+ + GM I+ ++H +  +++ AD V ++ +
Sbjct: 175 EPDLLIADEPTTALD-VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233

Query: 119 GEIVEV-LKPDLLSEAKHPMALRFLQ 143
           GEIVE      L +  +HP   + L 
Sbjct: 234 GEIVETGTTETLFAAPQHPYTRKLLA 259

Length = 534

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 84.2 bits (209), Expect = 1e-20
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 23  YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 82
              L    L      +   ++S GQ QRVA+AR L  +P+++L DEP ++LDP S++ + 
Sbjct: 126 LAALERVGLLDKAYQRAD-QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184

Query: 83  DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
           D+L ++ ++ G+T+++  H +   +  AD +  L +G IV    P  L++  
Sbjct: 185 DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEV 236

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 83.9 bits (208), Expect = 1e-20
 Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 9/142 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE------VYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           TV DN+ +G +++ +     E      V++LL L  LD     +  A++S GQ QRVALA
Sbjct: 90  TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALA 148

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EP+VLLLDEP  ALD    + +   L +L  +  +T V V+H  ++   +AD V 
Sbjct: 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208

Query: 115 LLVNGEIVEVLKPDLLSEAKHP 136
           ++  G I +V  PD + +  HP
Sbjct: 209 VMNKGRIEQVGTPDEVYD--HP 228

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.4 bits (209), Expect = 1e-20
 Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  ++ +GPQ  G  ++  E    + L+L  +  S   K   E+S GQ +RVA+A  LA
Sbjct: 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP++L+LDEPT+ LDP   + +  +  KL +  GMTIV+V+H +  +   AD V +L  
Sbjct: 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEK 220

Query: 119 GEIVEVLKP 127
           G++V   KP
Sbjct: 221 GKLVLSGKP 229

Length = 280

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.9 bits (210), Expect = 1e-20
 Identities = 43/131 (32%), Positives = 76/131 (58%), Gaps = 7/131 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKL----LSLADLDSSFLSKTGAEISVGQAQRVALART 56
           T+  +I +GP   G K  ++E  KL    L+   LD S+L ++   +S GQ +RVA+A  
Sbjct: 133 TIEKDIMFGPVALGVK--KSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGI 190

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA +PE+L+ DEPT+ LDP     +   L+   K +  T+ +++H+++ +  +AD V ++
Sbjct: 191 LAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVM 249

Query: 117 VNGEIVEVLKP 127
             G+I++   P
Sbjct: 250 DKGKILKTGTP 260

Length = 320

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 14/156 (8%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS--------SFLSKTGAEISVGQAQRVA 52
           ++ DN+  G  +R  KL   + ++ ++ A L            LS +   +S GQ Q + 
Sbjct: 116 SIMDNVLAG--VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173

Query: 53  LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112
           LARTLA  PEVLLLDEPTSALDP +T+ IE+ +  L  +  +T+++V+H++ Q  RI+D 
Sbjct: 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDR 231

Query: 113 VCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQ-LSG 146
             L  +G +VE    + L S  KH    R++  LSG
Sbjct: 232 AALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSG 267

Length = 276

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV DNI +G +LR     E      EV +LL +  L    L +   ++S GQ QRVAL R
Sbjct: 88  TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL----LDRKPKQLSGGQRQRVALGR 143

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            +  EP+V L+DEP S LD      +   L +L+++ G T + V+H   +   +AD + +
Sbjct: 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV 203

Query: 116 LVNGEIVEV 124
           + +G+I ++
Sbjct: 204 MNDGQIQQI 212

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 84.9 bits (211), Expect = 4e-20
 Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 8/128 (6%)

Query: 1   TVADNIRYGPQLRG------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           +VA+NI  G +         +K       +LL+   LD         ++S+ Q Q V +A
Sbjct: 99  SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIA 157

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R L+ +  VL+LDEPT+AL    T+ + D++ +LK + G+ I+ +SH + ++  IAD + 
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRIT 216

Query: 115 LLVNGEIV 122
           +L +G +V
Sbjct: 217 VLRDGRVV 224

Length = 500

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 17/134 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQR 50
           T+ +NI  G        T+ E+ + L LA+             + + + G  +S GQ QR
Sbjct: 418 TIRENIALG----RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR L   P +L+LDE TSALD  +   I+D L KL K  G T ++++H +  I+  A
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-A 530

Query: 111 DVVCLLVNGEIVEV 124
           D + +L NG IVE 
Sbjct: 531 DRIIVLDNGRIVER 544

Length = 567

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.2 bits (206), Expect = 5e-20
 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T+  +I +GP   G  K+  +    K + L  LD S+L ++  E+S GQ +RVALA  LA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP+ L+ DEPT+ LDP   + I ++   L K+ G TI++V+H +  +           +
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKD 240

Query: 119 GEIV 122
           G+I+
Sbjct: 241 GKII 244

Length = 305

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 83.7 bits (207), Expect = 5e-20
 Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 9/138 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +N+ +G ++R     E      E  +L+ L +           ++S GQ QRVALAR
Sbjct: 58  TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH----QLSGGQQQRVALAR 113

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L  +P++LLLDEP SALD      ++  L  ++++ G+T V V+H  ++   ++D + +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173

Query: 116 LVNGEIVEVLKPDLLSEA 133
           +  G+I ++  P+ + E 
Sbjct: 174 MRKGKIAQIGTPEEIYEE 191

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 42/135 (31%), Positives = 79/135 (58%), Gaps = 11/135 (8%)

Query: 1   TVADNIRYGPQLRG-----KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
            V DN+ +G QLRG     ++   +++  L+ L   +  ++     ++S G  QRV +AR
Sbjct: 90  NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI----WQLSGGMRQRVGIAR 145

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA EP++LLLDEP  ALD ++ + ++++L+ L ++ G  +++++H I++   +A  + +
Sbjct: 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV 205

Query: 116 L--VNGEIVEVLKPD 128
           L    G +VE L  D
Sbjct: 206 LSPGPGRVVERLPLD 220

Length = 259

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 10/127 (7%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           T  +N+ Y   L G K  E      E+   L + +     L +     S G  Q+VA+AR
Sbjct: 94  TARENLEYFAGLYGLKGDELTARLEELADRLGMEE----LLDRRVGGFSTGMRQKVAIAR 149

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L ++P VLLLDEPT+ LD ++T+ + + + +L+   G  I+  +H +++++R+ D V +
Sbjct: 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVV 208

Query: 116 LVNGEIV 122
           L  G +V
Sbjct: 209 LHRGRVV 215

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 7/126 (5%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALART 56
           TVA NI  G  P L   KL   +  KL ++A        L++   ++S GQ QRVALAR 
Sbjct: 87  TVAQNIGLGLNPGL---KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARC 143

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           L  E  +LLLDEP SALDP   Q +  ++ ++ ++  +T++MVSHS++   RIA    ++
Sbjct: 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV 203

Query: 117 VNGEIV 122
            +G I 
Sbjct: 204 ADGRIA 209

Length = 232

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 83.0 bits (206), Expect = 2e-19
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 21/135 (15%)

Query: 1   TVADNIRYG-PQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQA 48
           T+ DN+  G P       ++ ++ + L  A + S FL               A +SVGQA
Sbjct: 438 TLRDNVLLGNPDA-----SDEQLQQALENAWV-SEFLPLLPQGLDTPIGDQAAGLSVGQA 491

Query: 49  QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108
           QR+ALAR L    ++LLLDEPT++LD  S Q +   L    ++   T +MV+H ++ + +
Sbjct: 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQ 549

Query: 109 IADVVCLLVNGEIVE 123
             D + ++ +G+IV+
Sbjct: 550 W-DQIWVMQDGQIVQ 563

Length = 588

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 80.9 bits (199), Expect = 3e-19
 Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSF---LSKTGAEISVGQAQRVALA 54
           +V DN+ YG ++ G   K   ++ V   L  ADL       + K+  ++S GQ QR+ +A
Sbjct: 103 SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA +P+VLL+DEP   LDPI++  +E ++  L+ +  +T+V+VSH++ Q+ R++D   
Sbjct: 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222

Query: 115 LLVNGE 120
                E
Sbjct: 223 FFKGNE 228

Length = 261

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 79.2 bits (196), Expect = 4e-19
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 1   TVADNIRYG-PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
           +V + +  G  +L         V K L L  L      +    +S GQ QR+A+A  L +
Sbjct: 88  SVREELLLGLKELDAGNEQAETVLKDLDLYALKE----RHPLSLSGGQKQRLAIAAALLS 143

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
             ++L+ DEPTS LD  + + + +++ +L  + G  +++++H  + + ++ D V LL NG
Sbjct: 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANG 202

Query: 120 EIV 122
            IV
Sbjct: 203 AIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T  +N++Y  +L G  +K  +  + +L     L   +L +   E S G  Q+VA+AR L 
Sbjct: 91  TARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALV 149

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           ++P +L+LDEPTS LD  + +   D + +LK + G  ++  SH +++++ + D V +L  
Sbjct: 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHK 208

Query: 119 GEIVEVLKPDLLSEA 133
           GE+V     + L   
Sbjct: 209 GEVVLEGSIEALDAR 223

Length = 245

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 79.8 bits (197), Expect = 6e-19
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 25  LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 84
           LL +  L S    K   ++S GQ QR+ +AR LA +P++++LDE  S LD +    I ++
Sbjct: 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192

Query: 85  LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
           L KL++  G   + ++H ++ +Q     V ++  G+IVE      L   KHP A R LQ
Sbjct: 193 LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP-AGRNLQ 250

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.1 bits (197), Expect = 6e-19
 Identities = 45/131 (34%), Positives = 77/131 (58%), Gaps = 6/131 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYK----LLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           T+  +I +GP   G+   + E YK    LL L  L   ++ ++  E+S GQ +RVALA  
Sbjct: 107 TIEKDIAFGPVNLGEN--KQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           +A +   L+LDEPT  LDP   ++  ++  +L K++   I+MV+H++ Q+ RIAD V ++
Sbjct: 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224

Query: 117 VNGEIVEVLKP 127
             G+++ +  P
Sbjct: 225 HEGKVISIGSP 235

Length = 289

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 36/93 (38%), Positives = 62/93 (66%), Gaps = 6/93 (6%)

Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           K   ++S G  QRVA+AR L+  P+VLLLDEP  ALD ++  N+++ L+++ ++H +T++
Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169

Query: 98  MVSHSIKQIQRIADVVCLLVN------GEIVEV 124
           MV+H + +   ++D V +L N      G+I+EV
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.1 bits (195), Expect = 1e-18
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 25/165 (15%)

Query: 1   TVADNIRYGPQLRGKKLTE-------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           TV  +I +GP   G  L E       +    +L L +L      +    +S G+ +RVA+
Sbjct: 95  TVEQDIAFGPINLG--LDEETVAHRVSSALHMLGLEEL----RDRVPHHLSGGEKKRVAI 148

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           A  +A EP+VL+LDEPT+ LDP   + + D L  L + +GMT++  +H +  +  +AD +
Sbjct: 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208

Query: 114 CLLVNGEIV------EV-LKPDLLSEAKH-----PMALRFLQLSG 146
            ++  G IV      E+ L+PDLL+         P  +R LQ  G
Sbjct: 209 YVMDKGRIVAYGTVEEIFLQPDLLARVHLDLPSLPKLIRSLQAQG 253

Length = 277

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS----------KTGAEISVGQAQR 50
           T+  NIRYG        T+ EV +    A +    +           + G ++S G+ QR
Sbjct: 90  TIGYNIRYG----RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           VA+AR +   P +LLLDE TSALD  + + I+  L  + K  G T ++++H +  I   A
Sbjct: 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-A 202

Query: 111 DVVCLLVNGEIVE 123
           D + +L +G IVE
Sbjct: 203 DKIIVLKDGRIVE 215

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+  G     ++  +  +E+Y+L  +       L + G ++S GQ Q++A+AR L 
Sbjct: 91  TVEENLLTGLAALPRRSRKIPDEIYELFPVLK---EMLGRRGGDLSGGQQQQLAIARALV 147

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P++LLLDEPT  + P   ++I  V+ +L+ + GM I++V   +   + +AD   ++  
Sbjct: 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER 207

Query: 119 GEIVE 123
           G +V 
Sbjct: 208 GRVVA 212

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 32/81 (39%), Positives = 56/81 (69%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR LA +P+++L DEP ++LDP +++ + D L ++ K+ G+T+++  H
Sbjct: 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204

Query: 102 SIKQIQRIADVVCLLVNGEIV 122
            +   ++ AD +  L  GEIV
Sbjct: 205 QVDLAKKYADRIVGLKAGEIV 225

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV DN+ +  Q+R ++         L    L  + L+K  AE+S G+ QR++L R L   
Sbjct: 96  TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
           P+VLLLDE TSALD  +  N+ +++ +  ++  + ++ V+H   +I     V+ L
Sbjct: 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210

Length = 225

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 20/154 (12%)

Query: 1   TVADNIRYGP-QLRGKKLTENEVYKLLSLADLDSSFLSKTG---------AEISVGQAQR 50
           T  +N+ +GP ++RG    E E              L+K G         +E+S GQ QR
Sbjct: 93  TALENVMFGPLRVRGASKEEAE--------KQARELLAKVGLAERAHHYPSELSGGQQQR 144

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           VA+AR LA +P+++L DEPTSALDP     +  V+  L ++ GMT+V+V+H I   +++A
Sbjct: 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVA 203

Query: 111 DVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQ 143
             +  +  G I E   P  L+          FLQ
Sbjct: 204 SRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237

Length = 240

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 79.1 bits (195), Expect = 4e-18
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRV LAR LA EP + L DEPT  LDP + + + + L +  K  G+++V+ SH
Sbjct: 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
             + I+ ++D    L NGEI E   PD +  
Sbjct: 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 4/122 (3%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+    ++RGKK  E    V   L    L          ++S G+ QRVA+AR + 
Sbjct: 95  TVYENVALPLEVRGKKEREIQRRVGAALRQVGL-EHKADAFPEQLSGGEQQRVAIARAIV 153

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N P +LL DEPT  LDP  ++ I D+L +L  K G T+++ +H +  + R+A  V +L +
Sbjct: 154 NSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDD 212

Query: 119 GE 120
           G 
Sbjct: 213 GR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 78.7 bits (194), Expect = 5e-18
 Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 3/129 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +N+ +G +++G  K      V + L L  L      K G E+S G  QRV LAR  A
Sbjct: 122 TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPG-ELSGGMQQRVGLARAFA 180

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            E  +LL+DEP SALDP+    ++D L++L+ K   TIV VSH + +  +I + + ++  
Sbjct: 181 TEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEG 240

Query: 119 GEIVEVLKP 127
           G I++   P
Sbjct: 241 GRIIQHGTP 249

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 76.7 bits (190), Expect = 5e-18
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 1   TVADNIRYGPQLRGKKLT------------ENEVYKLLSLADLDSSFLSKTGAEISVGQA 48
           TV +N+    Q R                      +LL    L      +   E+S GQ 
Sbjct: 91  TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQ 149

Query: 49  QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108
           +R+ +AR LA +P++LLLDEP + L+P  T+ + +++ +L ++ G+T+++V H +  +  
Sbjct: 150 RRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMS 208

Query: 109 IADVVCLLVNGEIV 122
           +AD V +L  G ++
Sbjct: 209 LADRVTVLDQGRVI 222

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.6 bits (191), Expect = 5e-18
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 3/129 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  ++ +GP+  G  +   + +  K L    L    +SK+  E+S GQ +RVA+A  +A
Sbjct: 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EPE+L LDEP + LDP   + +  +    +K  G T+++V+H++  +   AD V +L +
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEH 220

Query: 119 GEIVEVLKP 127
           G++++   P
Sbjct: 221 GKLIKHASP 229

Length = 287

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.4 bits (191), Expect = 6e-18
 Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 6/125 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLL--SLADLD-SSFLSKTGAEISVGQAQRVALARTL 57
           TV +++ +GP   G  L++ EV K +  +L  +    F +K    +S GQ +RVA+A  L
Sbjct: 95  TVEEDVAFGPLNLG--LSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A +PE+++LDEPTS LDP+    I  +L  L K+ G+TI++ +H +  +   AD V ++ 
Sbjct: 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMS 211

Query: 118 NGEIV 122
           +G+I+
Sbjct: 212 DGKII 216

Length = 275

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.0 bits (189), Expect = 7e-18
 Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 8/126 (6%)

Query: 1   TVADNIRYGPQLRGK--KLTENEV----YKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ +N+ YG ++  K  +   +E+     K  +L       L+K+   +S GQ QR+ +A
Sbjct: 103 SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA +P+VLL+DEP SALDPI+T  +E+++  L+ +  +TI +V+H+++Q  R++D   
Sbjct: 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE--LTIAIVTHNMQQATRVSDFTA 220

Query: 115 LLVNGE 120
                E
Sbjct: 221 FFSTDE 226

Length = 259

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.1 bits (190), Expect = 7e-18
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV   I +GP+     L E  N  ++LL         +S++  ++S GQ +++A+   LA
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P++++LDEPT+ LDP S + +  +L  L+     TI++VSH + ++ R AD V ++  
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE 221

Query: 119 GEIVEVLKP 127
           G IV    P
Sbjct: 222 GSIVSQTSP 230

Length = 286

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 76.1 bits (187), Expect = 8e-18
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  NI  G  P L+     + +V        +   +L +   ++S GQ QRVALAR L 
Sbjct: 86  TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLV 144

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
               +LLLDEP SALDP+  + +  ++ +L  +   T++MV+H +   + IA  + ++  
Sbjct: 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204

Query: 119 GEI 121
           G+I
Sbjct: 205 GKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 74.9 bits (185), Expect = 2e-17
 Identities = 36/123 (29%), Positives = 74/123 (60%), Gaps = 4/123 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           T  +N+R   +L G +  +  + ++L +  L  S   K     S+G  QR+ +A  L   
Sbjct: 88  TARENLRLLARLLGIR--KKRIDEVLDVVGLKDSAKKKVKG-FSLGMKQRLGIALALLGN 144

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P++L+LDEPT+ LDP   + + ++++ L+ + G+T+++ SH + +IQ++AD + ++  G+
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGK 203

Query: 121 IVE 123
           ++E
Sbjct: 204 LIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 37/121 (30%), Positives = 75/121 (61%), Gaps = 4/121 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           T  +N++    L G  L ++ + ++L++ DL ++   K   + S+G  QR+ +A  L N 
Sbjct: 86  TARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTG-KKKAKQFSLGMKQRLGIAIALLNH 142

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P++L+LDEPT+ LDPI  Q + + L++   + G+T+++ SH + ++Q++AD + ++  G 
Sbjct: 143 PKLLILDEPTNGLDPIGIQELRE-LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201

Query: 121 I 121
           +
Sbjct: 202 L 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 21  EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80
           ++ K L L      +       +S GQ QRVA+AR L  EP+VLL DEPT+ALDP  T  
Sbjct: 124 KLLKRLRLKPYADRY----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179

Query: 81  IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           I  ++ +L +  G+T V+V+H ++  ++ A  V  + NG IVE
Sbjct: 180 IVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVE 221

Length = 242

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 1   TVADNIRYG-----PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           +V  N+RYG     P  R  +++   V +LL +  L    L +    +S G+ QRVA+ R
Sbjct: 91  SVRGNLRYGMKRARPSER--RISFERVIELLGIGHL----LGRLPGRLSGGEKQRVAIGR 144

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L + P +LL+DEP +ALD      I   L +L  + G+ I+ VSHS++++ R+AD V +
Sbjct: 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVV 204

Query: 116 LVNGEI 121
           L +G +
Sbjct: 205 LEDGRV 210

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 9/132 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           +VA+N+ +G +L G K  E     N+V ++L LA L    L +    +S GQ QRVA+ R
Sbjct: 91  SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL----LDRKPKALSGGQRQRVAIGR 146

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
           TL  EP V LLDEP S LD      +   + +L K+ G T++ V+H   +   +AD + +
Sbjct: 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206

Query: 116 LVNGEIVEVLKP 127
           L  G + +V KP
Sbjct: 207 LDAGRVAQVGKP 218

Length = 369

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 1   TVADNIRYG----PQLR--GKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           TV DNI +G    P+         + +V +LL +  L +    +  A++S GQ QRVALA
Sbjct: 90  TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL-AHLADRYPAQLSGGQKQRVALA 148

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EP++LLLDEP  ALD    + +   L +L ++   T V V+H  ++   +AD V 
Sbjct: 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVV 208

Query: 115 LLVNGEIVEVLKPD 128
           ++  G I +   PD
Sbjct: 209 VMSQGNIEQAGTPD 222

Length = 353

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 74.6 bits (184), Expect = 3e-17
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-------LSKTGAEISVGQAQRVAL 53
           T+ +NIR G +         E  K     D            L + G  +S G+ Q +A+
Sbjct: 92  TIMENIRLG-RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR +  +P++L+LDE TS +D  + + I++ L KL K  G T ++++H +  I+  AD +
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKI 207

Query: 114 CLLVNGEIVEVLKPDLLSEAK 134
            +L +G+I+E    D L   K
Sbjct: 208 LVLDDGKIIEEGTHDELLAKK 228

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 17/126 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQR 50
           T+A+NIR    L     ++ E+ + L  A LD           + + + GA +S GQAQR
Sbjct: 411 TIAENIR----LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +ALAR    +  +LLLDEPT+ LD  +   + + L  L +  G T+++V+H +      A
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAAL-A 523

Query: 111 DVVCLL 116
           D + +L
Sbjct: 524 DRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 76.4 bits (189), Expect = 4e-17
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVM 98
           A++SVG+ QRV + + L     +L+LDEPT+ L P   Q  +++   L+     G TI+ 
Sbjct: 139 ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP---QEADELFEILRRLAAEGKTIIF 195

Query: 99  VSHSIKQIQRIADVVCLLVNGEIVEVLKP 127
           ++H +K++  IAD V +L  G++V  + P
Sbjct: 196 ITHKLKEVMAIADRVTVLRRGKVVGTVDP 224

Length = 501

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ QRVA+AR L  EP+VLL DEPT+ALDP  T  I  ++ +L +  G+T V+V+H 
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHE 200

Query: 103 IKQIQRIADVVCLLVNGEIVE 123
           ++  ++ A  V  + NG IVE
Sbjct: 201 VEVARKTASRVVYMENGHIVE 221

Length = 242

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 74.1 bits (182), Expect = 5e-17
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 2   VADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP 61
           VAD       LR   LTE        LAD       +   E+S GQ QRV +AR LA  P
Sbjct: 88  VADFAAVRDALRRVGLTE--------LAD-------RPVGELSGGQRQRVLVARALATRP 132

Query: 62  EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
            VLLLDEP + LD  + + + ++ ++L    G  I+M +H + Q     D V LL NG +
Sbjct: 133 SVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-NGRV 190

Query: 122 VEVLKPDLLSEA 133
           +    P  L + 
Sbjct: 191 IADGTPQQLQDP 202

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQR 50
           ++ +NI  G        T+ E+ +   LA              + + + GA +S GQ QR
Sbjct: 562 SIRENIALGNPE----ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +ALAR L ++P++LLLDE TSALDP +   I   L+++    G T+++++H +  I+  A
Sbjct: 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHRLSTIRS-A 674

Query: 111 DVVCLLVNGEIVE 123
           D + +L  G+IVE
Sbjct: 675 DRIIVLDQGKIVE 687

Length = 709

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 73.6 bits (181), Expect = 8e-17
 Identities = 38/125 (30%), Positives = 71/125 (56%), Gaps = 8/125 (6%)

Query: 8   YGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL 65
           YG  + G +  E  +E+   + L +       +     S G  +R+ +AR+L + PEVL 
Sbjct: 101 YG--VPGAERRERIDELLDFVGLLE----AADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154

Query: 66  LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125
           LDEPT  LDP +  ++ + + KLK++ GMTI++ +H +++ +++ D V ++ +G I+   
Sbjct: 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214

Query: 126 KPDLL 130
            P+ L
Sbjct: 215 TPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 73.8 bits (182), Expect = 8e-17
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 1   TVADNIRYGPQLRG------------KKLTE--NEVYKLLSLADLDSSFLSKTGAEISVG 46
           TV +N+  G   R             K+  E      +LL    L        G  +S G
Sbjct: 95  TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-NLSYG 153

Query: 47  QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106
           Q +R+ +AR LA +P++LLLDEP + L+P  T+ + +++ +L+ + G+TI+++ H +K +
Sbjct: 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV 213

Query: 107 QRIADVVCLLVNGEIV 122
             +AD + +L  GE++
Sbjct: 214 MGLADRIVVLNYGEVI 229

Length = 250

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.4 bits (182), Expect = 8e-17
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  ++ +GPQ  G  K+  E    + L +  L   F  K+  E+S GQ +RVA+A  LA
Sbjct: 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EPEVL+LDEPT+ LDP +   +  +   + +  G T+V+V+H +  +   AD V LL  
Sbjct: 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEK 219

Query: 119 GEIVEVLKP-DLLSE 132
           G I+    P D+  E
Sbjct: 220 GHIISCGTPSDVFQE 234

Length = 288

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 73.9 bits (182), Expect = 8e-17
 Identities = 35/81 (43%), Positives = 55/81 (67%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S GQ QRVALAR L + P +LLLDEP  ALD ++   ++D++  L ++HG T+++V+
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191

Query: 101 HSIKQIQRIADVVCLLVNGEI 121
           H + +   +AD V L+  G+I
Sbjct: 192 HDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 25  LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 84
           +L   DLD S L K   ++S GQ QRV LAR LA EP++L+LDE  S LD +    +  +
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193

Query: 85  LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
           L KL+++ G   + ++H ++ ++R    V ++ NG+IVE            P A R LQ
Sbjct: 194 LKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSP-AGRVLQ 251

Length = 268

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQR 50
           TVA+NI YG    G   T  EV +    A+             + + + G ++S GQ QR
Sbjct: 91  TVAENIAYG--RPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR L  +P +L+LDE TSALD  S + ++  L +L K    T  +++H +  I+  A
Sbjct: 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-A 203

Query: 111 DVVCLLVNGEIVE 123
           D + +L +G+IVE
Sbjct: 204 DRIVVLEDGKIVE 216

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 10/127 (7%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +N+    ++ GK   E     +EV  L+ L     +  S    ++S G+ QRVA+AR
Sbjct: 95  TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS----QLSGGEQQRVAIAR 150

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            + N+P VLL DEPT  LDP  +  I  +  ++ +  G T++M +H ++ + R+   V  
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLA 209

Query: 116 LVNGEIV 122
           L +G +V
Sbjct: 210 LEDGRLV 216

Length = 223

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 1   TVADNIRYGP-QLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           TV +N+   P Q+ G  K+       K L+   +D     K    +S GQ QRV++AR L
Sbjct: 108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 167

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A EPEVLL DEPTSALDP     +  ++ +L ++ G T+V+V+H +   + ++  V  L 
Sbjct: 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH 226

Query: 118 NGEIVEVLKPD-LLSEAKHPMALRFLQ 143
            G+I E   P+ L    + P   +FL+
Sbjct: 227 QGKIEEEGAPEQLFGNPQSPRLQQFLK 253

Length = 257

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S GQ QRVA+AR LA EPEV+L DEPTSALDP     +  V+  L ++ G T+V+V+
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVT 209

Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPD 128
           H +   + ++  V  L  G+I E   P+
Sbjct: 210 HEMGFARDVSSHVIFLHQGKIEEEGPPE 237

Length = 256

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
             +S GQ QRVA+AR L + P+++L DEPT+ALD  S +++ +++ KL ++ G TI++V+
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199

Query: 101 HSIKQIQRIADV 112
           H      RI DV
Sbjct: 200 HD----NRILDV 207

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 9/140 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV  NI +G  L+  KL + E    V ++L L  +   F  +   ++S GQ QRVALAR+
Sbjct: 107 TVEQNIAFG--LKQDKLPKAEIASRVNEMLGLVHM-QEFAKRKPHQLSGGQRQRVALARS 163

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA  P++LLLDEP  ALD      ++  +V + ++ G+T VMV+H  ++   +A  + ++
Sbjct: 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIM 223

Query: 117 VNGEIVEVLKPDLLSEAKHP 136
             G+ V++ +P+ + E  HP
Sbjct: 224 NRGKFVQIGEPEEIYE--HP 241

Length = 377

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 32/96 (33%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E++ G+ Q+V +A  LAN+P +L+ DEPT++++P +   I  +L +L +    TI+++SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217

Query: 102 SIKQIQRIADVVCLLVNGEIVE-VLKPDLLSEAKHP 136
            ++ I + AD + +L  G+ VE     +L++   HP
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVTMPHHP 253

Length = 330

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 73.0 bits (179), Expect = 3e-16
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 17/131 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE---------ISVGQAQRV 51
           +V  ++ +G      KL E+EV K +  A      L +TG E         +S GQ +RV
Sbjct: 99  SVYQDVSFGAV--NLKLPEDEVRKRVDNA------LKRTGIEHLKDKPTHCLSFGQKKRV 150

Query: 52  ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
           A+A  L  EP+VL+LDEPT+ LDP+    I  +LV+++K+ G+TI++ +H I  +    D
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD 210

Query: 112 VVCLLVNGEIV 122
            V ++  G ++
Sbjct: 211 NVFVMKEGRVI 221

Length = 283

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV D ++Y  +L+G    E   ++   L   ++     +K   E+S G  Q++     + 
Sbjct: 88  TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI-VGKKTKKIKELSKGNQQKIQFISAVI 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           +EPE+L+LDEP S LDP++ + ++D + +LK++ G TI+  SH ++ ++ + D + +L  
Sbjct: 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKK 205

Query: 119 GEIV 122
           G+ V
Sbjct: 206 GQTV 209

Length = 300

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 32/95 (33%), Positives = 58/95 (61%)

Query: 34  SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 93
             L K   E+S G+  RVALA+ L  EP +++LDEPT  +DPI+  ++   ++K +++  
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478

Query: 94  MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128
            T ++VSH +  +  + D   L+ +G+IV++  P+
Sbjct: 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 71.1 bits (175), Expect = 5e-16
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 8/106 (7%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+  G  L+ KKL++ E      + L    L+   L +   E+S G+ QRVALAR 
Sbjct: 92  TVEENLDLG--LKYKKLSKKEKREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARA 148

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +   P ++L DEPT +LDP +   + D+L++L  + G TI++V+H 
Sbjct: 149 ILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHD 193

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.1 bits (177), Expect = 5e-16
 Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 6/130 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLS--LADLD-SSFLSKTGAEISVGQAQRVALARTL 57
           TV D++ +G  L  + +   E+ K++   LAD+    ++    A +S GQ QRVA+A  L
Sbjct: 101 TVGDDVAFG--LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A EP++++LDE TS LDP   + I  ++ KLKKK+ +T++ ++H I +   +AD V +L 
Sbjct: 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLD 217

Query: 118 NGEIVEVLKP 127
           +G+++    P
Sbjct: 218 DGKLLAQGSP 227

Length = 282

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 5/122 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV  N+RYG   +  +   +++  LL +  L    L +    +S G+ QRVA+ R L   
Sbjct: 92  TVRGNLRYGMW-KSMRAQFDQLVALLGIEHL----LDRYPGTLSGGEKQRVAIGRALLTA 146

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           PE+LL+DEP ++LD    + I   L +L+ +  + I+ VSHS+ ++ R+AD V +L NG+
Sbjct: 147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGK 206

Query: 121 IV 122
           + 
Sbjct: 207 VK 208

Length = 352

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A++S G+ QRVALAR  A  P+VL  DEPT  LD  +   I D+L  L ++ G T+V+V+
Sbjct: 145 AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204

Query: 101 HSIKQIQRIADVVCLLVNGEIVE 123
           H  +   R  D    L +G +VE
Sbjct: 205 HDPQLAAR-CDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 5/88 (5%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           L++ GA +S GQ QR+ +AR L   P +L+LDE TSALDP + + I+D L    ++ G T
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL----RRRGCT 664

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVE 123
            ++V+H +  I R  D + +L  G++V+
Sbjct: 665 CIIVAHRLSTI-RDCDEIIVLERGKVVQ 691

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 41/133 (30%), Positives = 78/133 (58%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQR 50
           ++ +N+  G +   + ++++E++    +A++              LS+ G+ IS GQ QR
Sbjct: 563 SILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +ALAR L  + +VL+LDE TS LD I+ + I + L+ L+ K   TI+ V+H +  + + +
Sbjct: 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRL-SVAKQS 675

Query: 111 DVVCLLVNGEIVE 123
           D + +L +G+I+E
Sbjct: 676 DKIIVLDHGKIIE 688

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 32/96 (33%), Positives = 61/96 (63%), Gaps = 1/96 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E++ G+ Q+V +A  LAN+P +L+ DEPT+A++P +   I  +L +L + +  TI+++SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHP 136
            ++ + + AD + +L  G+ VE     +L++   HP
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHP 253

Length = 330

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 33/90 (36%), Positives = 60/90 (66%), Gaps = 1/90 (1%)

Query: 34  SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 93
            FL++    +S GQ QRVA+A  LA +P++++LDE TS LDP   + + + + +LK++ G
Sbjct: 132 DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191

Query: 94  MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           +T++ ++H + +  + AD V ++  GEI+E
Sbjct: 192 ITVLSITHDLDEAAQ-ADRVIVMNKGEILE 220

Length = 279

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+ +G  LR +K    E    V + L +  L+  F  +   ++S GQ QRVA+AR 
Sbjct: 102 TVFENVAFG--LRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARA 158

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           + N+P+VLLLDE  SALD    + +++ L  L++K G+T V V+H  ++   ++D + ++
Sbjct: 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM 218

Query: 117 VNGEI 121
            +G I
Sbjct: 219 RDGRI 223

Length = 375

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 17/130 (13%)

Query: 1   TVADNIRYGPQLRGKKLTEN--------EVYKLLSLADLDSSFLSKTGAEISVGQAQRVA 52
           TV +++R+  +L+G   +E          V  L   A+  +  LS  G     G  ++++
Sbjct: 91  TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLS--G-----GMKRKLS 143

Query: 53  LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112
           LA  L   P VLLLDEPTS LDP S + I D++++++K    +I++ +HS+ + + + D 
Sbjct: 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDR 201

Query: 113 VCLLVNGEIV 122
           + ++ +G++ 
Sbjct: 202 IAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)

Query: 2   VADNIRYGPQLRGKKLTENEV--YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
           V DN+ +G QL G +  +     +++L    L+     +   ++S GQ QRV +AR LA 
Sbjct: 87  VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAA 145

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-- 117
            P++LLLDEP  ALD  + + ++ +L+KL ++ G  +++++H I++   +A  + LL   
Sbjct: 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205

Query: 118 NGEIVEVLKPD 128
            G +VE L  +
Sbjct: 206 PGRVVERLPLN 216

Length = 255

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 70.8 bits (173), Expect = 4e-15
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 40   GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
            G  +S GQ QR+A+AR L  EP++LLLDE TS+LD  S + IE  +V +K K   TI+ +
Sbjct: 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415

Query: 100  SHSIKQIQRIADVV 113
            +H I  I+R   +V
Sbjct: 1416 AHRIASIKRSDKIV 1429

Length = 1466

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 68.7 bits (169), Expect = 5e-15
 Identities = 40/123 (32%), Positives = 73/123 (59%), Gaps = 4/123 (3%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +NI    ++RG  KK  E ++ +LL    +     SK  + +S G+ +RV +AR LA
Sbjct: 91  TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLSGGERRRVEIARALA 149

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P+ LLLDEP + +DPI+ Q+I+ ++  LK + G+ +++  H++++   I D   ++  
Sbjct: 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYE 208

Query: 119 GEI 121
           G++
Sbjct: 209 GKV 211

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 67.7 bits (166), Expect = 5e-15
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 32  DSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 91
           D++  +  G   S G+ QR+ALAR L  +  ++LLDEPT  LDPI+ + +  ++ ++ K 
Sbjct: 88  DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146

Query: 92  HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
              T++ ++H +  I+   D +  L NG+I+ 
Sbjct: 147 -DKTLIWITHHLTGIEH-MDKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 68.5 bits (168), Expect = 5e-15
 Identities = 32/88 (36%), Positives = 53/88 (60%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           L K   ++S G  QRV +A  L  EP  L+ DEPT+ LD ++   +  +L +L++  G  
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           I++++H +  + RIAD V ++ +G IVE
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVE 206

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 65.8 bits (161), Expect = 7e-15
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV +N+ +G      K  +    + L    L      +    +S GQ QRVA+AR L  +
Sbjct: 52  TVRENLFFG---LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKK 108

Query: 61  PEVLLLDEPTS 71
           P++LLLDEPT+
Sbjct: 109 PKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 21/143 (14%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           +V +NI YG         + E+      A+    F+ +            G+++S GQ Q
Sbjct: 570 SVRENIAYGLT----DTPDEEIMAAAKAANAHD-FIMEFPNGYDTEVGEKGSQLSGGQKQ 624

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L  +P VL+LDE TSALD       E +L + + +   T+++++H +  ++R 
Sbjct: 625 RIAIARALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER- 679

Query: 110 ADVVCLLVNGEIVEVLKPDLLSE 132
           AD + +L  G +VE+     L E
Sbjct: 680 ADQILVLKKGSVVEMGTHKQLME 702

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%)

Query: 1   TVADNIRYGPQLRG---------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRV 51
           TV + + Y   LR          KK  E+ + + L+L  +  + +      IS G+ +RV
Sbjct: 97  TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG----ISGGERRRV 152

Query: 52  ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
           ++A  L  +P+VL+LDEPTS LD  +  N+   L +L +++ + I+ +      + R+ D
Sbjct: 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD 212

Query: 112 VVCLLVNGEIV 122
            + LL +GEIV
Sbjct: 213 RILLLSSGEIV 223

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV D+I +G  L  KK+   +    +  L     ++  +L K    +S GQ QRVA+A  
Sbjct: 100 TVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASV 156

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA  PE+++ DE TS LDP   + I+ ++V L+K    T++ ++H + +   +AD V + 
Sbjct: 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVF 215

Query: 117 VNGEIVEVLKPD 128
             G+++   KP 
Sbjct: 216 SEGKLIAQGKPK 227

Length = 271

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1   TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
            V +N+ +  ++ G   +     V   L L  L S       AE+S G+ QRVA+AR + 
Sbjct: 94  NVYENVAFALEVTGVPPREIRKRVPAALELVGL-SHKHRALPAELSGGEQQRVAIARAIV 152

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N P +L+ DEPT  LDP +T  I ++L K+ K  G T+V+ +H+ + +      V  L  
Sbjct: 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALER 211

Query: 119 GEI 121
           G++
Sbjct: 212 GKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 37/105 (35%), Positives = 60/105 (57%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           E +V  ++    LD     +  AE S GQ QR+A+AR L  +P +++LDEPTS+LD    
Sbjct: 402 EQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQ 461

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
             I  +L  L++KH +  + +SH +  ++ +   V +L  GE+VE
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506

Length = 529

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 6/104 (5%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK--KHGMTIVMVS 100
           +S GQ QRVA+AR LA  PEV+L DEPTSALDP   + + +VL  +++  +   T+V+V+
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDP---ELVGEVLNTIRQLAQEKRTMVIVT 201

Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 143
           H +   + +AD    +  G IVE      L ++ + P   +FL+
Sbjct: 202 HEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLE 245

Length = 250

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 9/124 (7%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
            V  N+RYG     K +    +++  LL +  L    L +    +S G+ QRVA+ R L 
Sbjct: 92  KVRGNLRYG---MAKSMVAQFDKIVALLGIEPL----LDRYPGSLSGGEKQRVAIGRALL 144

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             PE+LL+DEP ++LD    + +   L +L ++  + I+ VSHS+ +I R+AD V +L  
Sbjct: 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ 204

Query: 119 GEIV 122
           G++ 
Sbjct: 205 GKVK 208

Length = 352

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 67.1 bits (165), Expect = 3e-14
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 42  EISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           ++S G+ QRV LAR LA        P  LLLDEPTSALD     ++  +  +L  + G+ 
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLA 193

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
           +++V H +    R AD + LL  G +V      EVL P+ L   
Sbjct: 194 VIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRV 237

Length = 258

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 34/125 (27%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T  +N+     +  K + E     Y++L    L+   ++   +E+S G+ QRVA+AR L 
Sbjct: 99  TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-INHRPSELSGGERQRVAIARALV 157

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           N+P ++L DEPT  LD  + + I D++++L ++   + ++V+H ++  +++ D V  + +
Sbjct: 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKD 216

Query: 119 GEIVE 123
           G++  
Sbjct: 217 GQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 29/81 (35%), Positives = 52/81 (64%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S+GQ  R  +A  L +EPE+L LDEPT  LD ++ +NI + L +  ++ G T+++ SH
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212

Query: 102 SIKQIQRIADVVCLLVNGEIV 122
            +K I+ +A  V ++  G ++
Sbjct: 213 YMKDIEALARRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 6/144 (4%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           ++ +N+ YG ++ G    E    V + L L DL   F  +   +IS GQ QRVALAR L 
Sbjct: 94  SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALI 152

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            +P+VLL DEP S LD    +++ + + +L+++  +T + V+H   +   ++D V ++  
Sbjct: 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212

Query: 119 GEIVEVLKPDLLSEAKHPMALRFL 142
           G+I+++  P  L   + P A RF+
Sbjct: 213 GKIMQIGSPQELY--RQP-ASRFM 233

Length = 351

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 66.0 bits (161), Expect = 6e-14
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 9/127 (7%)

Query: 1   TVADNIRYG-PQLRGKKLTENEVYK-----LLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI YG      + + E          +  LA    + + + G+++S GQ QRVA+A
Sbjct: 103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R L   P+VL+LDE TSALD  S Q ++  L    ++   T+++++H +  ++R AD + 
Sbjct: 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQIL 219

Query: 115 LLVNGEI 121
           +L  G I
Sbjct: 220 VLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 64.5 bits (158), Expect = 7e-14
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 32  DSSFLSKTGAEI--SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 89
           D    S + AE   S GQ QR+ LAR L   P +L+LDEP S LD    + +   +  LK
Sbjct: 84  DDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143

Query: 90  KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
              G T ++++H  + +   AD + +L +G +
Sbjct: 144 AA-GATRIVIAHRPETLAS-ADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 18/154 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQR 50
           T+ DN+R    L     ++ E++  L    L+          +++L + G  +S G+ +R
Sbjct: 427 TLRDNLR----LANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +ALAR L ++  + LLDEPT  LDPI+ + +  +L   +   G T++MV+H ++ ++R  
Sbjct: 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALL--FEHAEGKTLLMVTHRLRGLER-M 539

Query: 111 DVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL 144
           D + +L NG+I+E      L  A +    R  QL
Sbjct: 540 DRIIVLDNGKIIEEGTHAELL-ANNGRYKRLYQL 572

Length = 573

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS----------KTGAEISVGQAQR 50
           T+A NI+YG        T  EV      A +     S          + G ++S G+ QR
Sbjct: 352 TIAYNIKYG----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR 407

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           VA+ART+   P +L+LDE TSALD  + Q I+  L ++      T ++++H +  I   A
Sbjct: 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR--TTLVIAHRLSTIID-A 464

Query: 111 DVVCLLVNGEIVE 123
           D + +L NG IVE
Sbjct: 465 DEIIVLDNGRIVE 477

Length = 497

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 17/145 (11%)

Query: 1   TVADNIRYG--PQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           TV D + +G  P  +G+   E     NE  + L L DL   +L     E+S GQ QR  +
Sbjct: 91  TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD----ELSGGQRQRAFI 146

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           A  LA + + +LLDEP + LD   +  I  +L +L  + G TIV+V H I      +D +
Sbjct: 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHI 206

Query: 114 CLLVNGEIV------EVLKPDLLSE 132
             L NG++V      E+++P++LSE
Sbjct: 207 VALKNGKVVKQGSPDEIIQPEILSE 231

Length = 252

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 18/134 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           T+A+NI Y    R ++ +  ++ +   +A     F++K            G  +S GQ Q
Sbjct: 432 TIANNIAYA---RTEQYSREQIEEAARMAYA-MDFINKMDNGLDTVIGENGVLLSGGQRQ 487

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L  +  +L+LDE TSALD  S + I+  L +L+K    T ++++H +  I++ 
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTIEK- 544

Query: 110 ADVVCLLVNGEIVE 123
           AD + ++ +GEIVE
Sbjct: 545 ADEILVVEDGEIVE 558

Length = 582

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 1/80 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ QRVA+A  LA  PE ++ DEPT+ LDP   + + + + +L KK+G+TI++++H 
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204

Query: 103 IKQIQRIADVVCLLVNGEIV 122
           +++    AD + ++ +G++V
Sbjct: 205 MEEAVE-ADRIIVMDSGKVV 223

Length = 280

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 22  VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 81
           V  LL  A L++   +K G E+S G  +R+ LAR L N+P+VL+LDEPT+ LDP +   +
Sbjct: 119 VPPLLEFAKLENKADAKVG-ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177

Query: 82  EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
            + L  L  + G TI++ +H +++ +R+ D +C++  G  +    P  L E++
Sbjct: 178 WERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE 229

Length = 306

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 1   TVADNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV D++ +G + +G    E    V + L L  +   F  +  A +S GQ QRVA+A  +A
Sbjct: 98  TVEDDVAFGLENKGIPHEEMKERVNEALELVGM-QDFKEREPARLSGGQKQRVAIAGAVA 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P++++LDE TS LDP     +   +  ++  + MT++ ++H + ++  ++D V ++ N
Sbjct: 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKN 215

Query: 119 GEIVEVLKPDLL 130
           G++     P  L
Sbjct: 216 GQVESTSTPREL 227

Length = 279

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
            V DN+ +G   Q   K      V   L L  L     +   A++S G  QR+A+AR +A
Sbjct: 95  KVEDNVAFGLRAQKMPKADIAERVADALKLVGL-GDAAAHLPAQLSGGMQQRIAIARAIA 153

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVMVSHSIKQIQRIADVVCLLV 117
            EP+VLLLDEP SALD     N+ + +  L ++   +TI+ V+H       +AD   ++ 
Sbjct: 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK 213

Query: 118 NGEIVEVLKPDLLSEA 133
           +G +    +P  L +A
Sbjct: 214 DGRLAAHGEPQALYDA 229

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQR 50
           +V +NIRYG        T+ EV      A              ++L + G  +S GQ QR
Sbjct: 429 SVMENIRYG----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR +  +  +LLLDE TSALD  S Q ++  L  L K  G T ++++H +  + + A
Sbjct: 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVLK-A 541

Query: 111 DVVCLLVNGEIVE 123
           D + ++  G IV 
Sbjct: 542 DRIVVMDQGRIVA 554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ +RV++A  L + P +L LDEPTS LD  S   +  +L +L    G TI+   H 
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQ 170

Query: 103 IK-QIQRIADVVCLLVNGEIV 122
              +I  + D + LL  G ++
Sbjct: 171 PSSEIFELFDKLLLLSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 18/134 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           T+A+NI YG   R ++    E+ + L+ A     F+ K            G  +S GQ Q
Sbjct: 421 TIANNIAYG---RTEQADRAEIERALAAAYA-QDFVDKLPLGLDTPIGENGVLLSGGQRQ 476

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L  +  +L+LDE TSALD  S + ++  L +L +  G T ++++H +  I++ 
Sbjct: 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK- 533

Query: 110 ADVVCLLVNGEIVE 123
           AD + ++ +G IVE
Sbjct: 534 ADRIVVMDDGRIVE 547

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 32/102 (31%), Positives = 62/102 (60%), Gaps = 1/102 (0%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           ++ GQ QRVALAR L   P++++ DE  ++LD      + +++++L++K G++ + V+  
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209

Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 143
           I  I+ I+D V ++  GE+VE     D+L+   H +  R ++
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251

Length = 267

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 1   TVADNIRYGPQ---LRGKKLTE--NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV D++ +GP    L   ++     E  K + + D    F  K    +S GQ +RVA+A 
Sbjct: 96  TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD----FRDKPPYHLSYGQKKRVAIAG 151

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA +P+V++LDEP + LDP   + + ++L +L  + G T+++ +H +      AD V +
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIV 210

Query: 116 LVNGEIVEVLKPDLLS 131
           L  G ++      LL+
Sbjct: 211 LKEGRVLAEGDKSLLT 226

Length = 274

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV + +  G         E EV   L           K    +S G+  R+ LA+ L   
Sbjct: 402 TVLEELSEGFP----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P +LLLDEPT+ LD  S + +E+    L    G T+++VSH    + R+A  +  LV  +
Sbjct: 458 PNLLLLDEPTNHLDIESLEALEEA---LLDFEG-TVLLVSHDRYFLDRVATRI-WLVEDK 512

Query: 121 IVEVL 125
           + E  
Sbjct: 513 VEEFE 517

Length = 530

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 39/109 (35%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 25  LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 84
           LL  A L+S   ++  +++S G  +R+ LAR L N+P++L+LDEPT+ LDP +   I + 
Sbjct: 156 LLEFARLESKADARV-SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214

Query: 85  LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG-EIVEVLKPDLLSE 132
           L  L  + G TI++ +H +++ +R+ D +C+L  G +I E     L+ E
Sbjct: 215 LRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262

Length = 340

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLS--LADLDSSFLSKT-GAEISVGQAQRVALARTL 57
           TV DNI    ++R K L + E  + L   L +   + L  +    +S G+ +RV +AR L
Sbjct: 95  TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL 154

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A  P+ +LLDEP + +DPI+  +I+ ++  LK + G+ +++  H++++   I D   ++ 
Sbjct: 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIIS 213

Query: 118 NGEI 121
           +G++
Sbjct: 214 DGKV 217

Length = 243

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 16  KLTENEVYKLLSLADL--DSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73
            LT  ++     L +L        +    +S G+ +RV +AR L  +PE+L+LDEP   L
Sbjct: 143 DLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202

Query: 74  DPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122
           D I+ + + + L +L        ++ V+H  ++I        LL  GE+V
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252

Length = 257

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.0 bits (155), Expect = 5e-13
 Identities = 44/140 (31%), Positives = 81/140 (57%), Gaps = 6/140 (4%)

Query: 1   TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           TV D++ +G + +G   +++ +     LL++  LD  F ++  A +S GQ QRVA+A  +
Sbjct: 98  TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGII 155

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A  PE+++LDE TS LDP   Q I  V+ ++K+K+ +T++ ++H + +    +D + ++ 
Sbjct: 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMK 214

Query: 118 NGEIVEVLKPDLLSEAKHPM 137
            GEI++   P  L      M
Sbjct: 215 AGEIIKEAAPSELFATSEDM 234

Length = 277

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 27/79 (34%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G  +R+ +A +L ++P+VL LDEPT+ LDP + + I D +  LK++ G+TI++ +H +
Sbjct: 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYM 184

Query: 104 KQIQRIADVVCLLVNGEIV 122
           ++  ++ D + ++ +G I+
Sbjct: 185 EEADKLCDRIAIIDHGRII 203

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 64.5 bits (158), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G  +S GQ Q VALAR L  +P +LLLDEPTSA+D  S +  +D L +     G T+V+V
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW--LAGKTLVLV 656

Query: 100 SHSIKQIQRIADVVCLLVNGEIV 122
           +H    +  + D + ++ NG IV
Sbjct: 657 THR-TSLLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 8/127 (6%)

Query: 1   TVADNI-RYGPQLRGKKLTE----NEVYKL-LSLADLDSSFLSKTGAEISVGQAQRVALA 54
           T+A+NI R+G +   +K+ E      V++L L L     + + + GA +S GQ QR+ALA
Sbjct: 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R L  +P +++LDEP S LD      +   ++  K + G T+V+++H    +    D + 
Sbjct: 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPSALA-SVDKIL 542

Query: 115 LLVNGEI 121
           +L +G I
Sbjct: 543 VLQDGRI 549

Length = 580

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 63.3 bits (154), Expect = 7e-13
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L + P +L+ DE TSALD  S   I   +  +    G T++++
Sbjct: 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIII 193

Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
           +H +  ++  AD + ++  G IVE
Sbjct: 194 AHRLSTVKN-ADRIIVMEKGRIVE 216

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 12/138 (8%)

Query: 1   TVADNIRYGPQLRGKK----LTENEVYK---LLSLADLDSSFLSKTGAEI---SVGQAQR 50
           T+ +N+    + RGKK       NE  +      LA L     ++    I   S GQ Q 
Sbjct: 98  TIEENLALA-ESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA 156

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           ++L     + P++LLLDE T+ALDP + + + ++  K+ ++H +T +MV+H+++      
Sbjct: 157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYG 216

Query: 111 DVVCLLVNGEIV-EVLKP 127
           + + +L +G+IV +V   
Sbjct: 217 NRLIMLHSGKIVLDVTGE 234

Length = 263

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G  +S GQ Q VALAR L N+P +LLLDEPTSA+D  S + +++ L +L      T++++
Sbjct: 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIII 195

Query: 100 SHSIKQIQRIADVVCLLVNGEIV 122
           +H    +  + D + ++ +G IV
Sbjct: 196 THRPSLLD-LVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 6/106 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLL--SLADLD-SSFLSKTGAEISVGQAQRVALARTL 57
            V  ++ +GP   G  L+E EV + +  +L  +  S    +    +S G+ +RVA+A  +
Sbjct: 85  DVDQDVAFGPLNLG--LSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV 142

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           A  P+VLLLDEPT+ LDP   + +  +L +L+ + GMT+V+ +H +
Sbjct: 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDV 187

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 33  SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 92
           S    +  + +S G+ QRV +AR LA EP++LLLDEPT+ LD +  Q     LV+     
Sbjct: 128 SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQLETLALVRELAAT 186

Query: 93  GMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA--------KHPMA 138
           G+T+V   H +       D V +L  G +V      EVL P L+            HP  
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDATVLTHPDT 246

Query: 139 LR 140
            R
Sbjct: 247 GR 248

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           E  +  LL  A L+S    +  A +S G  +R+ LAR L N+P++L+LDEPT+ LDP + 
Sbjct: 113 EAVIPSLLEFARLESKADVRV-ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
             I + L  L  + G TI++ +H +++ +R+ D +C+L +G  +   +P  L +
Sbjct: 172 HLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK----LKKKHGMTI 96
           +E+S G A+R ALAR +A EP++++ DEP    DPI+      VLVK    L    G+T 
Sbjct: 142 SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM----GVLVKLISELNSALGVTC 197

Query: 97  VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142
           V+VSH + ++  IAD   ++ + +IV       L     P   +FL
Sbjct: 198 VVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFL 243

Length = 269

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRV +A  L   PE+L+ DEPT+ALD      I  +L +L+++  M ++ ++H
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFL 142
           ++  ++++AD V ++ NG  VE  +   L S   HP   + L
Sbjct: 216 NLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257

Length = 529

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ Q +A+ R L ++P +LLLDEP+  L PI  Q I D + +L+++ GMTI +V  +
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQN 196

Query: 103 IKQIQRIADVVCLLVNGEIV 122
             Q  ++AD   +L NG +V
Sbjct: 197 ANQALKLADRGYVLENGHVV 216

Length = 237

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 7/139 (5%)

Query: 1   TVADNIRYGPQL-RGKKLTENEVY----KLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           +V +NI  G ++  G  +  + +Y    KLL+   LD +  +  G  + +GQ Q V +A+
Sbjct: 98  SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-NLGLGQQQLVEIAK 156

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            L  +  +L+LDEPT++L    T  + D++  L K HG+  + +SH + +++ I+D +C+
Sbjct: 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICV 215

Query: 116 LVNGEIVEVLKPDLLSEAK 134
           + +G  +       ++E  
Sbjct: 216 IRDGRHIGTRPAAGMTEDD 234

Length = 506

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L   P +L+ DE TSALD  S   I   + ++ +  G T++++
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIII 648

Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
           +H +  + R  D + +L  G+I E
Sbjct: 649 AHRLSTV-RACDRIIVLEKGQIAE 671

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 1   TVADNI-RYGPQLRGKKLTE----NEVYKL-LSLADLDSSFLSKTGAEISVGQAQRVALA 54
           TVA+NI R+G     +K+ E      V++L L L D   + +   GA +S GQ QR+ALA
Sbjct: 407 TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R L  +P++++LDEP S LD    Q + + +  LK + G+T+V+++H    +    D + 
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLG-CVDKIL 524

Query: 115 LLVNGEI 121
           +L +G I
Sbjct: 525 VLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           +V  N+RY   L G  +      + +LL+   L      K   E++ G  +RV +AR L 
Sbjct: 90  SVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVR-ELNGGHRRRVEIARALL 148

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
           + P +LLLDEPT  LDP S   I   +  L +  G++++  +H + +I+    +V L
Sbjct: 149 HRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVL 205

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 61.8 bits (150), Expect = 5e-12
 Identities = 39/128 (30%), Positives = 73/128 (57%), Gaps = 7/128 (5%)

Query: 1   TVADNIRYGPQ--LRGKKLTENEVY----KLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           +VA+NI  G +  L G ++  N +Y     LL    LD+  +++   +   GQ Q V +A
Sbjct: 94  SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           + L  +  +L+LDEP+S+L    T+ + D++  L K HG+  V +SH + +++ + D +C
Sbjct: 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLNEVKAVCDTIC 212

Query: 115 LLVNGEIV 122
           ++ +G+ V
Sbjct: 213 VIRDGQHV 220

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 9/97 (9%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMV 99
            ++S GQ QR  LA  LA +  V+LLDEPT+ LD I+ Q  +  ++ +L  + G T+V V
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQ-GKTVVTV 194

Query: 100 SHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 130
            H + Q  R  D + +L NG ++      EV+ P LL
Sbjct: 195 LHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLL 231

Length = 255

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 35/95 (36%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHS 102
           S GQ QR+A+AR L  +P+V++ DEP SALD +S Q  + ++++ L+++ G++ V +SH 
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD-VSVQAQVLNLMMDLQQELGLSYVFISHD 214

Query: 103 IKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 136
           +  ++ IAD V ++  G  VE   K  + +  +HP
Sbjct: 215 LSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHP 249

Length = 327

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ QRVA+A  LA  P V++LDE TS LDP + QN+ D++ K+K +H +TI+ ++H 
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202

Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP 127
           + +    AD V ++  G + +   P
Sbjct: 203 LSEAME-ADHVIVMNKGTVYKEGTP 226

Length = 269

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G +QRV +A  +A  P++L+ DEPT+ALD      I ++L++L++K  M +V+++H
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHP 136
            +  +   A  + ++  G++VE  K  D+    +HP
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHP 248

Length = 326

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 58.2 bits (142), Expect = 1e-11
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G+  R+ALA+ L   P +LLLDEPT+ LD  S + +E+ L +       T+++VSH  
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDR 127

Query: 104 KQIQRIADVVCLLVNGE 120
             + ++A  +  L +G+
Sbjct: 128 YFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 31/83 (37%), Positives = 52/83 (62%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E S GQ QR+ +AR LA  P+V++ DE  SALD      I ++L+ L++  G+  + +SH
Sbjct: 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522

Query: 102 SIKQIQRIADVVCLLVNGEIVEV 124
            +  ++RI+  V ++  G+IVE+
Sbjct: 523 DMAVVERISHRVAVMYLGQIVEI 545

Length = 623

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 18/138 (13%)

Query: 9   GPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA-------RTLANEP 61
             +        NEV + L L D     L ++  ++S G+ QRV LA         +    
Sbjct: 97  KTRTEAVASALNEVAEALGLDDK----LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152

Query: 62  EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
           ++LLLDEP ++LD ++ Q   D L+    + G+ +VM SH +    R AD V LL  G++
Sbjct: 153 QLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKL 211

Query: 122 V------EVLKPDLLSEA 133
           +      EVL P+ L++ 
Sbjct: 212 LASGRRDEVLTPENLAQV 229

Length = 248

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 12/126 (9%)

Query: 1   TVADNIRYG---PQLRGKKLTENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALART 56
           +V +NI +G    Q   +K+ +        LA L     L  +   + V   Q V + R 
Sbjct: 102 SVKENILFGLPKRQASMQKMKQ-------LLAALGCQLDLDSSAGSLEVADRQIVEILRG 154

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           L  +  +L+LDEPT++L P  T+ +   + +L  + G+ IV +SH + +I+++AD + ++
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVM 213

Query: 117 VNGEIV 122
            +G I 
Sbjct: 214 RDGTIA 219

Length = 510

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           +S+ G  +S GQ QR+ +AR L  +P +LL DE TSALD  +   + + L +LK    +T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK----VT 637

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
            ++++H +  I+  AD + +L  G +V+    D L   +
Sbjct: 638 RIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE 675

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 14  GKKLTENEVYKLLS---LADLDSSF-------LSKTGAEISVGQAQRVALARTLANEPEV 63
           G+ ++E +V++ L    LA+L  S        L + G  +SVGQ Q +ALAR L   P++
Sbjct: 438 GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497

Query: 64  LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           L+LDE T+ +D  + Q I+  L  +++    T+V+++H +  I   AD + +L  G+ VE
Sbjct: 498 LILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVE 554

Length = 592

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A++S G+ QRVALAR     P+VL  DEPT  LD  +   I D+L  L ++HG T+++V+
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204

Query: 101 H 101
           H
Sbjct: 205 H 205

Length = 228

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 1    TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLAN 59
            TVA++I +  QL+G+   E ++     L D          A ++S G  +++++A     
Sbjct: 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078

Query: 60   EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            + +V++LDEPTS +DP S ++I D+L  LK + G TI+M +H + +   + D + ++  G
Sbjct: 1079 DAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136

Query: 120  EI 121
             +
Sbjct: 1137 RL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 25/78 (32%), Positives = 50/78 (64%)

Query: 46  GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105
           GQ QR+ LAR L   P+V++ DE  ++LD      + +++++L++K G++ + V+  +  
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212

Query: 106 IQRIADVVCLLVNGEIVE 123
           ++ I+D V ++  GE+VE
Sbjct: 213 MKHISDQVLVMHQGEVVE 230

Length = 267

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.8 bits (142), Expect = 4e-11
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 28/157 (17%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE---------ISVGQAQRV 51
           TV +++ +GP+     L   E+ K +  A      L++ G E         +S GQ Q V
Sbjct: 94  TVEEDLAFGPE--NLCLPPIEIRKRVDRA------LAEIGLEKYRHRSPKTLSGGQGQCV 145

Query: 52  ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH--GMTIVMVSHSIKQIQRI 109
           ALA  L  EPE L+ DE TS LDP S      VL ++KK H  G TIV ++H+++++   
Sbjct: 146 ALAGILTMEPECLIFDEVTSMLDPDSG---IAVLERIKKLHEKGKTIVYITHNLEELH-D 201

Query: 110 ADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQLS 145
           AD + ++  G+IV   +P+ +LS+    ++L+ L L+
Sbjct: 202 ADRIIVMDRGKIVLEGEPENVLSD----VSLQTLGLT 234

Length = 274

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLL----------SLADLDSSFLSKTGAEISVGQAQR 50
           TV +N+R          T+ E++  L          +L D   + L + GA +S G+ QR
Sbjct: 424 TVRENLRLA----RPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479

Query: 51  VALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +ALAR L  +  +LLLDEPT  LD   + + +ED+L  L    G T+V+++H 
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS---GRTVVLITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 58.7 bits (143), Expect = 5e-11
 Identities = 27/84 (32%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G ++S G+ +R+ +AR L ++  +LLLDEPT  LD  + + I ++L +  +    T++M+
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMI 530

Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
           +H +  +++  D +C++ NG+I+E
Sbjct: 531 THRLTGLEQF-DRICVMDNGQIIE 553

Length = 574

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVS 100
           E S GQ QR+ +AR L  EP++++ DEP SALD +S Q  + ++L +L+++ G++++ ++
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALD-VSIQAQVVNLLQQLQREMGLSLIFIA 219

Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHP 136
           H +  ++ I+D V ++  G  VE+   D +     HP
Sbjct: 220 HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHP 256

Length = 331

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 57.5 bits (140), Expect = 6e-11
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 12/128 (9%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYK-------LLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           T+ +NI +G     ++    +V K       L  L D D + + + G  +S GQ QR++L
Sbjct: 81  TIRENILFGKPFDEERY--EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISL 138

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112
           AR + ++ ++ LLD+P SA+D    ++I E+ ++ L   +  T ++V+H + Q+   AD 
Sbjct: 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK-TRILVTHQL-QLLPHADQ 196

Query: 113 VCLLVNGE 120
           + +L NG 
Sbjct: 197 IVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 35  FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           F  +    +S G+ QRV LAR LA    VLLLDEPT++LD I+ Q     LV+     G 
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGK 190

Query: 95  TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
           T V   H +    R  D + LL +G +       +VL  D L  A
Sbjct: 191 TAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235

Length = 402

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 46  GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105
           G  Q+V LAR LA +P+VL+LDEPT  +D  +   I  ++ +L  + G  I+M+S  + +
Sbjct: 405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPE 463

Query: 106 IQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
           +  ++D + ++  G IV  L  +  +E  
Sbjct: 464 LLGLSDRILVMREGRIVGELDREEATEEA 492

Length = 500

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 25  LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 84
           L  + DL+  FL     ++S+GQ  R  LA  L + P+VL LDEPT  LD  +  NI + 
Sbjct: 140 LTEILDLEG-FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198

Query: 85  LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122
           L +  ++   T+++ +H    I  + D V L+  G++V
Sbjct: 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236

Length = 325

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 57.5 bits (139), Expect = 8e-11
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           +E+S G+ QRVA+AR L N P ++L DEPT  LD  +  +I  +L +L +  G   ++V+
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203

Query: 101 HSIKQIQRI 109
           H ++  +R+
Sbjct: 204 HDLQLAKRM 212

Length = 233

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 56.4 bits (137), Expect = 8e-11
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S G+ QR+A AR L ++P+ + LDE TSALD       ED L +L K+ G+T++ V H
Sbjct: 91  VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE----ESEDRLYQLLKELGITVISVGH 146

Query: 102 S 102
            
Sbjct: 147 R 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 8   YGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLD 67
           YG + +  K     V +++ L  L      K G  +S G  QRV LA+ L ++P+VL+LD
Sbjct: 103 YGMKGQLLK---QRVEEMIELVGLRPEQHKKIGQ-LSKGYRQRVGLAQALIHDPKVLILD 158

Query: 68  EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122
           EPT+ LDP     I +V+  + K    TI++ +H +++++ I D V ++  G+IV
Sbjct: 159 EPTTGLDPNQLVEIRNVIKNIGKDK--TIILSTHIMQEVEAICDRVIIINKGKIV 211

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T  +NI     + G  +K  + +V +++  A+L   F+ +     S G   R+A +    
Sbjct: 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD-FIDQPVKTYSSGMYARLAFSVATH 163

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP++LLLDE  +  D    +   + L +L +K+  TIV+VSH +  I++  D    L +
Sbjct: 164 VEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-TIVLVSHDLGAIKQYCDRAIWLEH 222

Query: 119 GEIVE 123
           G+I  
Sbjct: 223 GQIRM 227

Length = 249

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ +R+A A  L  +P +L  DEPTS LD     ++  VL  L +K G TI+   H 
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQ 225

Query: 103 -IKQIQRIADVVCLLVNGEIVEVLKP----DLLSEAKHP 136
              ++  + D + L+  G +  +  P       S+  HP
Sbjct: 226 PSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHP 264

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           +++S GQ QRV++AR L N  +V+L DEPT ALD  S + +  +L +L+ + G T+++V+
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVT 201

Query: 101 HSIKQIQRIADVVCLLVNGEIV 122
           H   Q+   A+ V  + +GEIV
Sbjct: 202 HD-PQVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G  Q+V LAR LA +P VL+LDEPT  +D  +   I  ++ +L    G  ++++S  +
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSEL 164

Query: 104 KQIQRIADVVCLLVNGEI 121
            ++  + D + ++  G I
Sbjct: 165 DELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 22/69 (31%), Positives = 50/69 (72%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           ++ GQ +R+ +AR +  +PE+L+LDEP + L+P  T+ +++++ +L+ +H +T++++ H 
Sbjct: 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213

Query: 103 IKQIQRIAD 111
           +K +  I+D
Sbjct: 214 MKLVMGISD 222

Length = 255

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 1   TVADNIRYG--PQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV + ++ G  P   G++  E+E    + L+  DL S    +    +S G+ QRV LAR 
Sbjct: 91  TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-SGLAGRDYRTLSGGEQQRVQLARV 149

Query: 57  LAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           LA           L LDEPTSALD     +   +  +L ++ G  ++ V H +    + A
Sbjct: 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYA 208

Query: 111 DVVCLLVNGEIV------EVLKPDLLS 131
           D + LL  G ++      +VL  + L 
Sbjct: 209 DRIVLLHQGRVIASGSPQDVLTDETLE 235

Length = 259

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 17/145 (11%)

Query: 1   TVADNIRYGPQLRG-------KKLTENEVYKLLSLADLDSSFLSKT-GAEISVGQAQRVA 52
           T+A+NI  G +          KK+   E  KLL  A L+  F S     E+S+G+ Q V 
Sbjct: 95  TIAENIFLGREFVNRFGRIDWKKMYA-EADKLL--ARLNLRFSSDKLVGELSIGEQQMVE 151

Query: 53  LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112
           +A+ L+ E +V+++DEPT AL    T+++  V+ +L K  G  IV +SH +K+I  I D 
Sbjct: 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDD 210

Query: 113 VCLLVNGEI-----VEVLKPDLLSE 132
           V +  +G+      V  L  D L E
Sbjct: 211 VTVFRDGQFIAEREVADLTEDSLIE 235

Length = 501

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 7/125 (5%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV + + Y   L+G   K  +  V ++L L +L      K    +S G  +RV +A+ L 
Sbjct: 88  TVREFLDYIAWLKGIPSKEVKARVDEVLELVNL-GDRAKKKIGSLSGGMRRRVGIAQALV 146

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS-HSIKQIQRIADVVCLLV 117
            +P +L++DEPT+ LDP       ++L +L +     IV++S H ++ ++ + + V +L 
Sbjct: 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR---IVILSTHIVEDVESLCNQVAVLN 203

Query: 118 NGEIV 122
            G++V
Sbjct: 204 KGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 28/82 (34%), Positives = 50/82 (60%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G  QR+ +A  L  E   ++ DEPT+ LD ++   I D+L  + +K  + +++V+H
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199

Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
            +  + R+AD V ++ +G IVE
Sbjct: 200 DMGVVARLADDVAVMSHGRIVE 221

Length = 254

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 28  LADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87
           L  L      +  + +S G  +RVALAR L  EP++LLLDEPT+ LD  S + +ED L +
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR 198

Query: 88  LKKKHGMTIVMVSH 101
                  T+++VSH
Sbjct: 199 YPG----TVIVVSH 208

Length = 530

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 32/90 (35%), Positives = 52/90 (57%)

Query: 34  SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 93
           + LS+   ++S G  QRV +A  L+  P VL+ DEPT+ALD      I  ++  L+K+  
Sbjct: 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219

Query: 94  MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           M ++ ++H +  +  IAD V ++  GE VE
Sbjct: 220 MGVIFITHDMGVVAEIADRVLVMYQGEAVE 249

Length = 623

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 55.8 bits (134), Expect = 4e-10
 Identities = 28/79 (35%), Positives = 46/79 (58%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ QRVA+AR L  + +V+L DEP ++LDP S + + D L  + +  G+T+V+  H 
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212

Query: 103 IKQIQRIADVVCLLVNGEI 121
           +    R  + +  L  G +
Sbjct: 213 VDYALRYCERIVALRQGHV 231

Length = 262

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G  +SVGQ Q + LAR L  + ++L+LDE T+++DP +   I+  + +  K    T++ +
Sbjct: 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLTI 194

Query: 100 SHSIKQIQRI-ADVVCLLVNGEIVE 123
           +H +  I  I +D + +L  G +VE
Sbjct: 195 AHRLDTI--IDSDRILVLDKGRVVE 217

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 1   TVADNI-----RYGPQLRGKKLTENEVYKLLS--LADLD---SSFLSKTGAEISVGQAQR 50
           ++A+N+        P  RG  L    + K     + + D    S  +   + +S G  Q+
Sbjct: 353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARS-LSGGNQQK 411

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           + LAR LA  P++L+  +PT  LD  + + I + L++L+   G  ++++S  + +I  ++
Sbjct: 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELS 470

Query: 111 DVVCLLVNGEIVEVLKPDLLSEAK 134
           D + ++  G IV ++ P+  +  +
Sbjct: 471 DRIAVIYEGRIVGIVPPEEATREE 494

Length = 501

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT----------GAEISVGQAQR 50
           ++ DNIR G        T+ E+      A        K           G ++S G+ QR
Sbjct: 424 SIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR L  +P +L+LDE TSALD  +   ++  L +L    G T  +++H +  + R A
Sbjct: 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDEL--MKGRTTFIIAHRLSTV-RNA 536

Query: 111 DVVCLLVNGEIVE 123
           D + +  NG +VE
Sbjct: 537 DRILVFDNGRVVE 549

Length = 588

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRV LAR L N P++L+LDEPT  +D      + D++ +L+++    ++MVSH
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179

Query: 102 SIKQIQ-RIADVVCLLVNGEIVEVLKPDLLSEAKHP 136
            +  +  +  +V+CL  N  I     P+++S   HP
Sbjct: 180 DLHLVMAKTDEVLCL--NHHICCSGTPEVVS--LHP 211

Length = 251

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 55.0 bits (132), Expect = 8e-10
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSH 101
           +S GQ QR  +A  LA E  ++LLDEPT+ LD IS Q ++ ++L +L ++ G T+  V H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD-ISHQIDLLELLSELNREKGYTLAAVLH 202

Query: 102 SIKQIQRIADVVCLLVNGEIV------EVLKPDLL 130
            + Q  R A  +  L  G+IV      E++  +L+
Sbjct: 203 DLNQACRYASHLIALREGKIVAQGAPKEIVTAELI 237

Length = 265

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 12/97 (12%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV---KLKKKHGMTIVMV 99
           +S G+ QR  +A  +A +   LLLDEPTSALD I+ Q   DVL    +L ++ G+T++ V
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQ--VDVLALVHRLSQERGLTVIAV 204

Query: 100 SHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 130
            H I    R  D +  L  GE++      E+++ + L
Sbjct: 205 LHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETL 241

Length = 265

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 27  SLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 86
           +L D   + +    +++S GQ QR+++AR +   P++L+LDE TS+LD  S   ++  + 
Sbjct: 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623

Query: 87  KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
            LK       ++++H +  I R A+ + +L N E    +  D++ E
Sbjct: 624 NLKGNENRITIIIAHRLSTI-RYANTIFVLSNRERGSTVDVDIIGE 668

Length = 1466

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S GQ Q + +   LA +P++LLLDEP + +    T+   ++L  L  KH  +I++V 
Sbjct: 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH--SILVVE 203

Query: 101 HSIKQIQRIADVVCLLVNGEI 121
           H +  ++ IAD V +L  G +
Sbjct: 204 HDMGFVREIADKVTVLHEGSV 224

Length = 249

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G   R+A A   A EP++LL+DE  +  D  + Q      ++   K G T+++VSH  
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDA-AFQEKCQRRLRELLKQGKTVILVSHDP 202

Query: 104 KQIQRIADVVCLLVNGEIVE 123
             I+R+ D   +L  G+I  
Sbjct: 203 SSIKRLCDRALVLEKGKIRF 222

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS-TQNIEDVLVKLKKKHGMTIVMVSH 101
           +S GQ +RVA+A  L  +   LLLDEPT+ LDP   TQ I   +++     G  +++ SH
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI--AIIRRIVAQGNHVIISSH 194

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKP 127
            I  I  I+D V +L  G+I+    P
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHGAP 220

Length = 271

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           +V +N+ YG ++RG    E      E  ++L L       L +   E+S GQ QRVA+ R
Sbjct: 92  SVRENMAYGLKIRGMPKAEIEERVAEAARILELEP----LLDRKPRELSGGQRQRVAMGR 147

Query: 56  TLANEPEVLLLDEPTSALD 74
            +  EP V L DEP S LD
Sbjct: 148 AIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 26  LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDV 84
           L   ++D + +       S G  QR+ +AR L   P ++ +DEPT  LD +S Q  + D+
Sbjct: 132 LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD-VSVQARLLDL 190

Query: 85  LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 136
           L  L +  G+ +++V+H +   + +A  + ++  G +VE  L   +L + +HP
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHP 243

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S+   Q + +A+TL  + +V+++DEPTS+L       +  ++ +L+K+ G  IV +S
Sbjct: 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYIS 202

Query: 101 HSIKQIQRIADVVCLLVNGEIV 122
           H + +I+RI D   ++ +G  V
Sbjct: 203 HKLAEIRRICDRYTVMKDGSSV 224

Length = 510

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
           NEV   L L D D++      + +S G  ++ AL R L + P+VLLLDEPT+ LD  + +
Sbjct: 140 NEVLAQLGL-DPDAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIE 193

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
            +E  L    K    +I+ +SH    I+ +A
Sbjct: 194 WLEGFL----KTFQGSIIFISHDRSFIRNMA 220

Length = 635

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 12/124 (9%)

Query: 12  LRGKKLTENEVYKLLS----LADL------DSSFLSKTGAEISVGQAQRVALARTLANEP 61
           L GK L E    ++L     L DL      D + + + G  +S GQ QRV+LAR + +  
Sbjct: 720 LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 779

Query: 62  EVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           ++ L D+P SA+D    ++I E V+         T ++V+H I  + ++ DV+ ++  G+
Sbjct: 780 DIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGK 838

Query: 121 IVEV 124
           I E+
Sbjct: 839 ISEM 842

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G  Q+V +++ L   PEV++ DEPT  +D  +   I  V+ +L    G  I+MVS 
Sbjct: 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSS 467

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLK-PDLLSEAK 134
            + +I  + D + +   G + ++L   D +SE +
Sbjct: 468 ELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEE 501

Length = 510

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT----------GAEISVGQAQR 50
           ++ +NIR G +      T+ EVY+    A      L ++          G  +S G+ QR
Sbjct: 424 SIRENIRLGRE----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR +     +L+LDE TSALD  +   +++ +  L+K    T  +++H +  + R A
Sbjct: 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR--TTFIIAHRLSTV-RNA 536

Query: 111 DVVCLLVNGEIVE 123
           D+V  L  G ++E
Sbjct: 537 DLVLFLDQGRLIE 549

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 19/140 (13%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL------AN-EPEVLLLDEPTSA 72
           N+V   L+L D     L ++  ++S G+ QRV LA  +      AN   ++LLLDEP ++
Sbjct: 107 NDVAGALALDDK----LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNS 162

Query: 73  LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLK 126
           LD ++ Q+  D L+    + G+ IVM SH +    R A    LL  G+++      EVL 
Sbjct: 163 LD-VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221

Query: 127 PDLLSEAKHPMALRFLQLSG 146
           P +L++A + M  R L + G
Sbjct: 222 PPVLAQA-YGMNFRRLDIEG 240

Length = 248

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 33  SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 92
           ++ L +    +S G+ ++  L + L +EP++L+LDEP   LD  S Q + ++L  L +  
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS- 184

Query: 93  GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEA 133
           G+T+V+V +   +I        +L +  + E   + ++L +A
Sbjct: 185 GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226

Length = 490

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
               +LL+  ++         A  S G+ QRV +AR    +  +LLLDEPT++LD  + Q
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
            + + L+   K  G  ++ + H  +  + +AD
Sbjct: 187 VVVE-LIAEAKARGAALIGIFHDEEVRELVAD 217

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E S G  QRV +A  L   P++L+ DEPT+ALD      I  +L +LK++    I+M++H
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 143
            +  +  I D V ++  G  +E     D+  +  HP ++  L 
Sbjct: 221 DLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263

Length = 330

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           ++ + ++L    L +    +    +S GQ Q + +   L  +P++LLLDEP + +    T
Sbjct: 121 KDRIEEVLETIGL-ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET 179

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
           +   ++L  L  KH  ++V+V H ++ ++ IAD V +L  G +
Sbjct: 180 EKTAELLKSLAGKH--SVVVVEHDMEFVRSIADKVTVLHQGSV 220

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G  Q+  L R L+ + +V+LLDEPT  +D  +   I +V+ +L  + G+ ++ VS  +
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDL 456

Query: 104 KQIQRIADVVCLLVNGEIV-EVLKPD 128
            ++  +AD + ++  G I  E+ +  
Sbjct: 457 PEVLGVADRIVVMREGRIAGELAREQ 482

Length = 501

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G  +S G+ +RV +AR LA  P+ +LLDEP + +DPIS  +I+ ++  L +  G+ +++ 
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLIT 193

Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 128
            H++++   + +   ++  G ++    P 
Sbjct: 194 DHNVRETLAVCERAYIVSQGHLIAHGTPT 222

Length = 241

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH--GMTIVMV 99
            +S G+ QR+A AR L ++P+ + LDE TSALD  +    ED L +L K+     T++ V
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET----EDRLYQLLKEELPDATVISV 570

Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
            H        +  + LL +    + LKP  L   +
Sbjct: 571 GHRPTLWNFHSRQLELLDDAG-GQNLKPPALPTER 604

Length = 604

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 1   TVADNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           +V  N+ +     L+G     N     L  + LD +F     A +S GQ  RVAL R L 
Sbjct: 93  SVGQNLLFALPATLKGNA-RRNAANAALERSGLDGAFHQDP-ATLSGGQRARVALLRALL 150

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +P+ LLLDEP S LD          +    +  G+  V V+H
Sbjct: 151 AQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTH 193

Length = 213

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRV +AR + N+P VLL DEPT  LD   ++ I  +  +  +  G+T++M +H
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATH 195

Query: 102 SIKQIQR 108
            I  I R
Sbjct: 196 DIGLISR 202

Length = 222

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 15/114 (13%)

Query: 16  KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75
           + ++ E+Y  L +        S+ G  +S GQ Q + LAR L   P VL+LDE T+++D 
Sbjct: 107 EYSDEEIYGALRV--------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158

Query: 76  ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKP 127
            +   I+  + +       TI+ ++H   +++ I D   +LV   GE+ E   P
Sbjct: 159 ATDALIQKTIREEFT--NSTILTIAH---RLRTIIDYDKILVMDAGEVKEYDHP 207

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 20/98 (20%)

Query: 21  EVYKLLSLADLDS------------SFLS----KTGAEISVGQAQRVALARTLANEPEVL 64
           E+YK L L D  +            SF      K     S G   R+ALAR L  EP++L
Sbjct: 307 EIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLL 366

Query: 65  LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           LLDEPT+ LD  +   +E  L+K  K    T ++VSH+
Sbjct: 367 LLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSHA 400

Length = 718

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 4   DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEV 63
           D  RY   ++  +L E+    +    + D++ L + G  +S GQ  R++LAR +  + ++
Sbjct: 125 DEYRYKSVVKACQLEED----ITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180

Query: 64  LLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI- 121
            LLD P   LD  + + I E  + KL      T ++V+  ++ + + AD + +L  G   
Sbjct: 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANK--TRILVTSKMEHL-KKADKILILHEGSSY 237

Query: 122 -------VEVLKPDLLSE 132
                  ++ L+PD  S+
Sbjct: 238 FYGTFSELQSLRPDFSSK 255

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 26  LSLADLDSSFLSKTGAEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPI 76
           L+LA   +  + +    +S G+  RV  AR LA           P  LLLDEPT+ALD  
Sbjct: 130 LALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188

Query: 77  STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 130
               + D + +L +   + ++ + H      R AD + +L +G IV      +VL P  +
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHI 248

Query: 131 SE 132
           + 
Sbjct: 249 AR 250

Length = 272

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 19  ENEVYKLLSLADLDSSFLSK-TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77
             E+ +   L  LD  FL +      S G+ +R  + + L  EP++ +LDEP S LD  +
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDA 179

Query: 78  TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA-----DVVCLLVNGEIVEVLKPDLLSE 132
            + + + +  L+++ G  +++++H     QR+      D V +L +G IV+   P+L  E
Sbjct: 180 LKIVAEGINALREE-GRGVLIITHY----QRLLDYIKPDKVHVLYDGRIVKSGDPELAEE 234

Length = 251

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +SV Q Q + +A+  +   +++++DEPTS+L      ++  ++ KLK++ G  IV +S
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYIS 191

Query: 101 HSIKQIQRIADVVCLLVNGEIV 122
           H +++I ++ D + +L +G+ +
Sbjct: 192 HKMEEIFQLCDEITILRDGQWI 213

Length = 491

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           +S G  Q+VA+AR L   P+VL+LDEPT  +D  + + I  ++ + K + G++I++VS
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVS 452

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
            ++S G+ +RVAL R L ++P++LLLDEPT+ LD  S   +E  L +       T+V V+
Sbjct: 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG----TVVAVT 215

Query: 101 H 101
           H
Sbjct: 216 H 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G+ +R  + + L  EP++ +LDEP S LD  + + + +V+ KL+++ G ++++++H  
Sbjct: 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHY- 163

Query: 104 KQIQRI-----ADVVCLLVNGEIVEVLKPDLLSE 132
              QR+      D V +L +G IV+    +L  E
Sbjct: 164 ---QRLLDYIKPDRVHVLYDGRIVKSGDKELALE 194

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           + E+ K L+L DL    +     E+S G+ QRVA+A  L+ E ++ LLDEP++ LD    
Sbjct: 436 KTEIVKPLNLEDLLERPVD----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 138
             +  V+ +  + +  T ++V H I  I  ++D + ++  GE      P     A  PM+
Sbjct: 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRL-IVFEGE------PGKHGHASPPMS 544

Query: 139 LR 140
           +R
Sbjct: 545 MR 546

Length = 591

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 1   TVADNIRYG--PQLRG---KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TVA+N+  G  P   G   ++L   E  + L    +D    +     +S+GQ Q V +A+
Sbjct: 95  TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-YLSIGQRQMVEIAK 153

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LA    V+  DEPTS+L     + +  V+ +L+ + G  I+ VSH +++I  + D + +
Sbjct: 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITV 212

Query: 116 LVNGEIVE 123
             +G  V 
Sbjct: 213 FKDGRYVA 220

Length = 501

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G  Q+V + R L  +PE+L+LDEPT  +D  +   I  ++ +L KK    I+++S  
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSE 450

Query: 103 IKQIQRIADVVCLLVNGEIVEVLK 126
           + ++  I D + ++ NG +  ++ 
Sbjct: 451 MPELLGITDRILVMSNGLVAGIVD 474

Length = 491

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHS 102
           S G  QR+ +AR L   P ++ +DEPT  LD +S Q  + D+L  L ++ G+ +V+V+H 
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLD-VSVQARLLDLLRGLVRELGLAVVIVTHD 211

Query: 103 IKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 136
           +   + +AD + ++  G++VE  L   +L +  HP
Sbjct: 212 LAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHP 246

Length = 258

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 26/133 (19%)

Query: 8   YGPQLRGKKLTE---------NEVYKLLSLADL-DSSFLSKTGAEISVGQAQRVALARTL 57
           Y P+     + E         N   ++L+ A L D+    +  +E+S GQ +R  LA+ L
Sbjct: 463 YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL 522

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A  P VLL+DE  + LD ++   +   + +L ++ G+T+++V+H                
Sbjct: 523 AERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTH---------------- 566

Query: 118 NGEIVEVLKPDLL 130
             E+   L+PD L
Sbjct: 567 RPEVGNALRPDTL 579

Length = 593

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 21/135 (15%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLA-DLDS------SFLSKTGAEISVGQAQRVAL 53
           TV DNI +G     ++        + +L  DLD       + + + G  IS GQ QRV++
Sbjct: 694 TVRDNILFGSPFDPERY--ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK--LKKKHGMTIVMVS---HSIKQIQR 108
           AR + +  +V + D+P SALD    + + D  +K  L+ K   T V+V+   H + Q+ R
Sbjct: 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK---TRVLVTNQLHFLSQVDR 808

Query: 109 IADVVCLLVNGEIVE 123
           I     L+  G I E
Sbjct: 809 II----LVHEGMIKE 819

Length = 1622

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 10  PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69
           PQL  K L   E+    SL D   S L     ++S GQ +R+AL   L  E ++L+LDE 
Sbjct: 421 PQLIEKWLQRLELAHKTSLNDGRFSNL-----KLSTGQKKRLALLLALLEERDILVLDEW 475

Query: 70  TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 129
            +  DP   +    VL+ L K+ G TI  +SH        AD +  + NG++ E+   + 
Sbjct: 476 AADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 534

Query: 130 LSEAKHPMAL 139
              A+  +A 
Sbjct: 535 DETARDAVAR 544

Length = 546

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           +S G+ +RVAL R L  +P++LLLDEPT+ LD  S   +E  L       G T+V V+H
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTH 218

Length = 556

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVS 100
           E++ G   RV LA+ L + P++LLLDEPT+ LD I+T   +EDVL +       T++++S
Sbjct: 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD-INTIRWLEDVLNERNS----TMIIIS 209

Query: 101 H 101
           H
Sbjct: 210 H 210

Length = 530

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 1   TVADNIRYG----PQLRGKKLTENEVYKLLSL-ADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +NI +G     +   + +    +   L L    D + + + G  IS GQ QRV++AR
Sbjct: 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS---HSIKQIQRI 109
            + +  ++ + D+P SALD      + D  +K + K G T V+V+   H +  + RI
Sbjct: 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK-GKTRVLVTNQLHFLPLMDRI 809

Length = 1495

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 36  LSKTGAEISVGQAQRVALARTL-ANEPEVL-LLDEPTSALDPISTQNIEDVLVKLKKKHG 93
           LS++   +S G+AQR+ LA  + +    VL +LDEP+  L P     + + L +L +  G
Sbjct: 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRL-RDLG 189

Query: 94  MTIVMVSHSIKQIQRIADVV 113
            T+++V H  +   R AD V
Sbjct: 190 NTVLVVEHD-EDTIRAADHV 208

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 1   TVADNIRYGPQLRGKKLTE-NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
           TVA+N+ +     G +  +     + + LA L           +S GQ +RVALAR L +
Sbjct: 89  TVAENLEFWAAFLGGEELDIAAALEAVGLAPL----AHLPFGYLSAGQKRRVALARLLVS 144

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
              + +LDEPT+ALD  +     +++     + G+ ++  +H 
Sbjct: 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI-VIAATHI 186

Length = 207

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 18/116 (15%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLA-------DL----DSSFLSKTGAEISVGQAQ 49
           TV +NI +G     ++      YK ++ A       DL    D + + + G  +S GQ Q
Sbjct: 94  TVEENITFGSPFNKQR------YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQ 147

Query: 50  RVALARTLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104
           R+ +AR L     ++ LD+P SALD  +S   +++ ++K  +    T+V+V+H ++
Sbjct: 148 RICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S G  Q+  LA+ L   P++L+LDEPT  +D  +   I  ++ +L ++ G+ I+++S
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVIS 462

Query: 101 HSIKQIQRIADVVCLLVNGEI 121
             + ++  ++D V ++  G++
Sbjct: 463 SELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 43  ISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           +S G+ QRV LA  L +EP   + +LDEP++ L       + +V+  L    G T++++ 
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIE 146

Query: 101 HSIKQIQR 108
           H++  +  
Sbjct: 147 HNLDVLSS 154

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
           G  +S GQ  RV+LAR +    +V LLD+P SALD    + + E+    L    G T V+
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--LGALAGKTRVL 837

Query: 99  VSHSIKQIQRIADVVCLLVNGEIV 122
            +H +  + R AD V  L +G + 
Sbjct: 838 ATHQVHVVPR-ADYVVALGDGRVE 860

Length = 1560

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 14/135 (10%)

Query: 15  KKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVL 64
            K T++ +++ L +A L +          + +++ G   SVGQ Q   LAR    +  +L
Sbjct: 119 CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178

Query: 65  LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124
           ++DE T+++D ++T+NI   +V +      T+V ++H +  I   AD+V +L  G +VE 
Sbjct: 179 IMDEATASID-MATENILQKVV-MTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVEC 235

Query: 125 LKP-DLLSEAKHPMA 138
             P +LL++     A
Sbjct: 236 DTPENLLAQEDGVFA 250

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 1   TVADNIRYGPQLR-GKKLTENE-------VYKLLSLADLDSSFLSKTGAEISVGQAQRVA 52
           TV +++R+   LR  K ++++E       V KLL +     + +   G  ++V Q +R+ 
Sbjct: 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT 911

Query: 53  LARTLANEPEVLL-LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           +   L  +P++LL LDEPTS LD  +  +I  ++ KL   HG  I+   H
Sbjct: 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL-ADHGQAILCTIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S GQ +RV LAR +A + +V+LLDEP + +D  +   I  +L +L+ + G T+++ +H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTH 200

Query: 102 SIKQIQRIAD 111
           ++  +    D
Sbjct: 201 NLGSVTEFCD 210

Length = 272

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A++S GQ +RVALAR L +   + +LDEPT+ALD        + +     + GM ++   
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183

Query: 101 HSIKQIQRIADVVCL 115
             +   +  A  + L
Sbjct: 184 QDLGLSEAGARELDL 198

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 28/114 (24%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 21  EVYKLLSLADLDSSFLSKTGAE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
            +   L+L  +D  FL+++  E  S G+ +R  + +    EP++ +LDE  S LD  + +
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA-DVVCLLVNGEIVEVLKPDLLSE 132
            + + + +L++    + ++++H  + +  I  D V +L++G IV+    +L  E
Sbjct: 182 IVAEGINRLREPD-RSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 23/84 (27%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G  Q+V +A+ L   P++L++DEPT  +D  +  +I  ++  +  +  + ++ +S  
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSD 462

Query: 103 IKQIQRIADVVCLLVNGEIVEVLK 126
           +++I+++AD V ++  GEI   L 
Sbjct: 463 LEEIEQMADRVLVMHQGEISGALT 486

Length = 510

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 15/128 (11%)

Query: 18   TENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLL 66
            ++ EV+  L LA L  +F+S           + G  +SVGQ Q V LAR L  + ++L+L
Sbjct: 1387 SDEEVWWALELAHL-KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVL 1445

Query: 67   DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126
            DE T+A+D + T N+    ++ + +   T++ ++H +  I     V+ +L  GE+ E   
Sbjct: 1446 DEATAAVD-LETDNLIQSTIRTQFED-CTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGA 1502

Query: 127  PDLLSEAK 134
            P  L + +
Sbjct: 1503 PSNLLQQR 1510

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 15  KKLTEN----EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70
           KK+ E     EV + L L ++    L +  +E+S G+ QRVA+A  L  + +V   DEP+
Sbjct: 186 KKVDERGKFDEVVERLGLENV----LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241

Query: 71  SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           S LD     N   V+ +L +  G  +++V H +  +  ++D V +L
Sbjct: 242 SYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHIL 286

Length = 591

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHS 102
           S G  QR+ +AR L   P ++ +DEPT  LD +S Q  + D+L  L ++ G+ +V+V+H 
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD-VSVQARLLDLLRGLVRELGLAVVIVTHD 211

Query: 103 IKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 136
           +   + +A  + ++  G +VE  L   +L + +HP
Sbjct: 212 LAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHP 246

Length = 258

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)

Query: 4   DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEV 63
           D  RY   ++  +L E+    +    + D + L + G  +S GQ  R++LAR +  + ++
Sbjct: 514 DEYRYTSVIKACQLEED----IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL 569

Query: 64  LLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            LLD P + LD ++ + I E  L KL      T ++V+  ++ +++ AD + LL  G
Sbjct: 570 YLLDSPFTHLDVVTEKEIFESCLCKLMSNK--TRILVTSKLEHLKK-ADKILLLHEG 623

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM-VSH 101
           IS G+ +RV++A  L +   VL  D  T  LD  +   I   +  +      T  + +  
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178

Query: 102 SIKQIQRIADVVCLLVNGEIV 122
           +  +I  + D V +L  G  +
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S G+ QR+A+AR   ++P+  +LDE TSA+      ++E  + +L ++ G+T+  VSH
Sbjct: 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITLFSVSH 637

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A  S G+ QRV +AR    +  +LLLDEPT++LD  +   + + L++  K  G  +V + 
Sbjct: 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIF 209

Query: 101 H 101
           H
Sbjct: 210 H 210

Length = 235

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           IS G+ +RV++A  +   P +L+LDEPTS LD  +   +   L  L +K G TIV   H 
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQ 265

Query: 103 -IKQIQRIADVVCLLVNG 119
              ++ ++ D V +L  G
Sbjct: 266 PSSRVYQMFDSVLVLSEG 283

Length = 659

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           T  +N+ +  +  G       +++ L+   L          ++S GQ +RVALAR   + 
Sbjct: 91  TALENLHFWQRFHGS-GNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALARLWLSP 148

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
             + +LDEP +ALD      +  ++     + G+ +++ +H
Sbjct: 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGI-VLLTTH 188

Length = 209

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 11   QLRGKKLTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69
            +LRG    E E     S+  L  S +  +     S G  ++++ A  L   P ++LLDEP
Sbjct: 2038 RLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097

Query: 70   TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            T+ +DP + + + + +V + ++ G  +V+ SHS+++ + +   + ++V G
Sbjct: 2098 TTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
             +S G  Q+  LA+ L   P VL+LDEPT  +D  +   I  ++ +L ++ G+ I++VS
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVS 460

Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133
             + ++  ++D V ++  G+    LK D ++ A
Sbjct: 461 SELAEVLGLSDRVLVIGEGK----LKGDFVNHA 489

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           + E+ K L +  +    L +   E+S G+ QRVA+A  L+ + ++ LLDEP++ LD    
Sbjct: 96  KTEIAKPLQIEQI----LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 138
                V+ +  + +  T  +V H I  I  +AD +       IV   +P +   A  P +
Sbjct: 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL-------IVFEGEPSVNGVANPPQS 204

Query: 139 L-----RFLQLSG 146
           L     RFL+   
Sbjct: 205 LRSGMNRFLKNLD 217

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH---GMTI 96
           G  +S G  Q + LAR++ ++ ++LLLDEP++ LDPI+ Q I   L     K      T+
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-----KQAFADCTV 190

Query: 97  VMVSHSIKQI 106
           ++  H I+ +
Sbjct: 191 ILSEHRIEAM 200

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRVA+A  L       L DEP++ LD     N    + +L ++   T ++V H
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130

Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140
            +  +  ++D +  +  GE      P +   A  P   R
Sbjct: 131 DLAVLDYLSDRI-HVFEGE------PGVYGIASQPKGTR 162

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 8/96 (8%)

Query: 24  KLLSLADLDSSFLS--KTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQ 79
           +L  L DL   +L+  +  A +S G+ +R ALA+ L  E      +LDEP+  L P  T 
Sbjct: 456 RLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTH 515

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQ---RIADV 112
            + +V+ KL+ + G T+++V H  + I    RI D+
Sbjct: 516 KLINVIKKLRDQ-GNTVLLVEHDEQMISLADRIIDI 550

Length = 1809

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75
           A++S GQ +R+ALAR   +   + +LDEPT+ALD 
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 23/128 (17%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           ++E+ K L L  L    L K   ++S G+ QRVA+A  L+ + ++ LLDEP++ LD    
Sbjct: 434 KSEIIKPLQLERL----LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD---- 485

Query: 79  QNIED------VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
             +E        + ++ ++   T ++V H I  I  I+D + ++  GE      P     
Sbjct: 486 --VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL-MVFEGE------PGKHGH 536

Query: 133 AKHPMALR 140
           A  PM +R
Sbjct: 537 ASGPMDMR 544

Length = 590

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 13  RGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA 72
           RGK    +EV + L L     + L +  +E+S G+ QRVA+A  L  + +    DEPTS 
Sbjct: 190 RGKL---DEVVERLGL----ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSY 242

Query: 73  LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           LD     N+  ++ +L +     +++V H +  +  +AD V
Sbjct: 243 LDIRQRLNVARLIRELAEGK--YVLVVEHDLAVLDYLADNV 281

Length = 590

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +SV Q +R+ +   LA +P +L LDEPTS LD  +  NI   L KL    G  I+   H
Sbjct: 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-ADSGQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 36   LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM- 94
            L   G  +S G  Q + LAR++ ++ ++LLLDEP++ LDP++ Q I   L     K    
Sbjct: 1347 LVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-----KQSFS 1401

Query: 95   --TIVMVSHSIK 104
              T+++  H ++
Sbjct: 1402 NCTVILSEHRVE 1413

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL----KKKHGMT 95
           G ++      R+ALA T  +   +L LDEPT+ LD    +NIE+ L ++    K +    
Sbjct: 119 GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE---ENIEESLAEIIEERKSQKNFQ 175

Query: 96  IVMVSHSIKQIQRIADVVC 114
           +++++H  + +     +  
Sbjct: 176 LIVITHDEELVDAADHIYR 194

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRVA+A  LA + +    DEP+S LD     N   ++ +L  +    +++V H
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYVLVVEH 197

Query: 102 SIKQIQRIADVVCLL 116
            +  +  ++D +  L
Sbjct: 198 DLAVLDYLSDYIHCL 212

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 39  TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKKKHG 93
             A  S     R+ALA     +P+VL+LDE TS LD      +       +L+ LK +  
Sbjct: 57  KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKN 116

Query: 94  MTIVMVSHSIKQIQRIA 110
           +T+++ ++  K +    
Sbjct: 117 LTVILTTNDEKDLGPAL 133

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%)

Query: 36   LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
            +S+ G   SVGQ Q ++LAR L    ++L+LDE T+++D  +   I+  + +  K    T
Sbjct: 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS--CT 1422

Query: 96   IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLS 131
            +++++H +  I    D + +L +G+++E   P +LLS
Sbjct: 1423 MLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLS 1458

Length = 1495

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 26  LSLADLDSSFLSKTGAEISVGQAQRVAL-ARTLANEPEVLLLDEPTSALDPISTQNIE-- 82
           L +  +D          +S GQ QR+AL  R L   P +L+LDEP   LDP++ Q +   
Sbjct: 385 LDILGIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRF 443

Query: 83  -DVLVKLKKKHGMT-IVMVSH 101
            DVL+      G T ++ VSH
Sbjct: 444 VDVLI----SEGETQLLFVSH 460

Length = 490

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGMTIVM 98
           G  +S GQ QR+++AR L    E+L+LD+  SA+D  +   I   L  L++   G T+++
Sbjct: 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI---LHNLRQWGEGRTVII 505

Query: 99  VSHSIKQIQRIADVVCLLVNGEIVE 123
            +H +  +   A  + ++ +G I +
Sbjct: 506 SAHRLSALTE-ASEILVMQHGHIAQ 529

Length = 569

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 43  ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           +S G+AQR+ LA+ L   +    + +LDEPT+ L     + + +VL +L  K G T+V++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK-GNTVVVI 888

Query: 100 SHS---IKQIQRIAD 111
            H+   IK    I D
Sbjct: 889 EHNLDVIKTADYIID 903

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 12  LRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA---NEPEVLLLDE 68
           LR  +L   ++ K L L       L      IS G  + +AL   L     +  +LL+DE
Sbjct: 159 LRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDE 218

Query: 69  PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           P + L P   + + + L+K   + G  ++  +HS
Sbjct: 219 PENGLHPKLLRKLVE-LLKELSEKGAQLIFTTHS 251

Length = 256

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 44  SVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           S G+AQRV LA+ L   +    + +LDEPT+ L     + + +VL +L  K G T++++ 
Sbjct: 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIE 882

Query: 101 H 101
           H
Sbjct: 883 H 883

Length = 935

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 39  TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98
           T   +S GQ +R+AL      +  +LL DE  +  DP   +   + L+   K+ G TI++
Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526

Query: 99  VSHSIKQIQRIADVVCLLVNGEIVEVLK 126
           +SH  +  + +AD +  L  G IV+  +
Sbjct: 527 ISHDDQYFE-LADQIIKLAAGCIVKDTE 553

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           +S GQ  RVA A+    +P +LLLDEP++ LD  + + +   LV  +      ++MVSH
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG----VLMVSH 682

Length = 718

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 85
           ++S G+  RV LA+TL +   VLLLDEPT+ LD  + + +E+ L
Sbjct: 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           S GQ +RVALAR       + +LDEP +A+D      +E +L +  ++ GM +++ +H
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM-VILTTH 187

Length = 204

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 36   LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74
            +S+ G   SVGQ Q ++LAR L    ++L+LDE T+A+D
Sbjct: 1368 VSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406

Length = 1622

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 36  LSKTGAEISVGQAQRVALARTL-ANEPEVL-LLDEPTSALDPISTQNIEDVLVKLKKKHG 93
           LS++   +S G+AQR+ LA  + +    VL +LDEP+  L     + + + L +L+   G
Sbjct: 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL-G 533

Query: 94  MTIVMVSHSIKQIQRIAD 111
            T+++V H  +   R AD
Sbjct: 534 NTVIVVEHD-EDTIRAAD 550

Length = 935

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S GQ +R+AL   LA E ++LLLDE  +  DP   +    VL+ L ++ G TI  +SH  
Sbjct: 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510

Query: 104 KQIQRIADVVCLLVNGEIVE 123
                 AD +  + NG++ E
Sbjct: 511 HYFIH-ADRLLEMRNGQLSE 529

Length = 547

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALD 74
           S G+  R+ LA+TL     VLLLDEPT+ LD
Sbjct: 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477

Length = 556

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 24  KLLSLAD--LDSSFLSKTGAEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPIST 78
           KL +L D  L    L +    +S G+AQR+ LA+ L+       + +LDEPT+ L     
Sbjct: 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV 208

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111
           + + +VL +L  K G T+V++ H++  I + AD
Sbjct: 209 KKLLEVLQRLVDK-GNTVVVIEHNLDVI-KCAD 239

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 31  LDSSFLSKTGAEISVGQAQRVALARTLANE-PEVL-LLDEPTSALDPISTQNIEDVLVKL 88
           LD   LS+    +S G+AQR+ LA  + +    VL +LDEP+  L     + + + L +L
Sbjct: 477 LDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRL 536

Query: 89  KKKHGMTIVMVSHSIKQIQRIADVV 113
           +   G T+++V H  +   R AD V
Sbjct: 537 RDL-GNTLIVVEHD-EDTIRAADYV 559

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVMVS 100
           +S GQ ++VAL R   ++ ++ LLDEP  ALD +S   +  ++ K++  +  G  +++ S
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLLTS 184

Query: 101 H 101
           H
Sbjct: 185 H 185

Length = 200

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 24  KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 83
           +++  AD+   F+ +     S G   R+  A ++   P++L++DE  S  D   T+   D
Sbjct: 126 EIIEFADI-GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD 184

Query: 84  VLVKLKKKHGMTIVMVSHSIKQIQ 107
            + + K++ G TI  +SHS+ Q++
Sbjct: 185 KMNEFKEQ-GKTIFFISHSLSQVK 207

Length = 549

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
              S G+  R+ LA  +   P +LLLDEPT+ LD    Q + + L+  +      +V+VS
Sbjct: 429 RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVS 484

Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPDL 129
           H    ++   D + L+ +G+ VE    DL
Sbjct: 485 HDRHLLRSTTDDLYLVHDGK-VEPFDGDL 512

Length = 638

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 43  ISVGQAQRVALARTLANE---PEVL-LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98
           +S G+ +  ALA  LA     P  L +LDE    LDP   Q + + +++   K    IV 
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV- 136

Query: 99  VSH 101
           ++H
Sbjct: 137 ITH 139

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 20   NEVYKLLSLADLDSSFLSKTGAE-ISVGQAQRVALARTLANEPEVLLLDEPTSALD 74
            +EV +L+ L +L  + +   G   +S  Q +R+ +A  L   P ++ +DEPTS LD
Sbjct: 996  DEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051

Length = 1470

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.98
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.98
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.98
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.98
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.98
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.98
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.98
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.98
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.98
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.98
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.98
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.98
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.98
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.98
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.98
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.98
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.98
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.98
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.98
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.98
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.98
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.98
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.98
COG4181	228	Predicted ABC-type transport system involved in ly	99.97
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.97
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.97
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.97
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.97
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.97
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.97
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.97
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.97
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.97
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.97
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.97
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.97
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.97
COG4988	559	CydD ABC-type transport system involved in cytochr	99.97
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.97
COG4559	259	ABC-type hemin transport system, ATPase component	99.97
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.97
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.96
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.96
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.96
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.96
COG4987	573	CydC ABC-type transport system involved in cytochr	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.96
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.96
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.96
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.96
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.96
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.96
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.96
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.96
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.96
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.96
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.96
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.96
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.96
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.96
PLN03211	659	ABC transporter G-25; Provisional	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.96
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.96
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.95
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.95
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.95
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.95
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.95
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.95
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.95
PLN03232	1495	ABC transporter C family member; Provisional	99.95
PLN03130	1622	ABC transporter C family member; Provisional	99.95
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.95
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.95
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.95
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.95
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.95
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.95
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.95
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.95
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.95
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.95
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.95
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.95
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.95
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.94
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.94
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
PTZ00243	1560	ABC transporter; Provisional	99.94
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.94
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.94
PLN03140	1470	ABC transporter G family member; Provisional	99.94
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.94
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.94
PRK11147	635	ABC transporter ATPase component; Reviewed	99.94
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.94
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.94
cd03246	173	ABCC_Protease_Secretion This family represents the	99.94
PLN03073	718	ABC transporter F family; Provisional	99.94
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.94
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.94
PLN03232	1495	ABC transporter C family member; Provisional	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.94
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
PLN03130	1622	ABC transporter C family member; Provisional	99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.93
PRK11147	635	ABC transporter ATPase component; Reviewed	99.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.93
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.93
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.93
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.93
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.93
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.93
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.92
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.92
PLN03140	1470	ABC transporter G family member; Provisional	99.92
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.92
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.92
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.92
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.92
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.92
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.92
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.92
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.92
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.92
PTZ00243	1560	ABC transporter; Provisional	99.91
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.91
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.91
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.9
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.9
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.9
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.9
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.9
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.9
COG0488	530	Uup ATPase components of ABC transporters with dup	99.89
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.89
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.88
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.88
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.88
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.87
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.86
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.86
COG0488	530	Uup ATPase components of ABC transporters with dup	99.86
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.86
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.86
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.86
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.85
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.85
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.85
KOG0062	582	consensus ATPase component of ABC transporters wit	99.84
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.84
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.83
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.83
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.83
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.81
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.8
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.8
KOG0062	582	consensus ATPase component of ABC transporters wit	99.79
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.78
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.78
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.78
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.78
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.76
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.75
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.75
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.74
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.73
PHA02562	562	46 endonuclease subunit; Provisional	99.72
PRK10869	553	recombination and repair protein; Provisional	99.72
PRK03918	880	chromosome segregation protein; Provisional	99.69
PRK01156	895	chromosome segregation protein; Provisional	99.68
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.68
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.65
COG4178	604	ABC-type uncharacterized transport system, permeas	99.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.63
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.63
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.63
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.6
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.59
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.59
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.57
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.56
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.54
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.53
PRK02224	880	chromosome segregation protein; Provisional	99.53
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.53
PRK00064	361	recF recombination protein F; Reviewed	99.51
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.5
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.44
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.42
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.4
TIGR00611	365	recf recF protein. All proteins in this family for	99.32
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.31
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.27
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.27
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.27
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.26
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.22
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.22
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.2
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.19
PRK14079	349	recF recombination protein F; Provisional	99.19
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.16
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.12
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.07
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.06
PRK13695	174	putative NTPase; Provisional	98.96
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.94
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.9
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.81
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.8
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.8
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.7
cd01128	249	rho_factor Transcription termination factor rho is	98.56
PF13175	415	AAA_15: AAA ATPase domain	98.49
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.44
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.44
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.41
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.38
PRK06067	234	flagellar accessory protein FlaH; Validated	98.37
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.37
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.34
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.29
COG3910	233	Predicted ATPase [General function prediction only	98.26
COG4637	373	Predicted ATPase [General function prediction only	98.14
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.11
PF13166	712	AAA_13: AAA domain	98.1
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.01
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.96
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	97.87
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.86
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	97.81
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.78
PRK05399	854	DNA mismatch repair protein MutS; Provisional	97.71
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.67
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	97.63
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.55
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	97.42
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.42
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	97.2
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.14
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.09
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.05
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.93
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	96.88
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.7
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.68
PF13514	1111	AAA_27: AAA domain	96.62
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	96.44
COG3044	554	Predicted ATPase of the ABC class [General functio	96.42
smart00382	148	AAA ATPases associated with a variety of cellular	96.29
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.28
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.2
PRK13764	602	ATPase; Provisional	96.11
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.98
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.93
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	95.79
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	95.77
PRK09302	509	circadian clock protein KaiC; Reviewed	95.69
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	95.65
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.42
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	95.37
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.26
PRK04863	1486	mukB cell division protein MukB; Provisional	95.18
PRK04296	190	thymidine kinase; Provisional	95.1
PRK11823	446	DNA repair protein RadA; Provisional	95.03

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.2e-43  Score=266.33  Aligned_cols=142  Identities=38%  Similarity=0.570  Sum_probs=130.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||++|++|++...+.+.  .+.++.++++.+||+ ++.++||.+|||||||||+|||||+.+|++||+|||||+|||.+.
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT  177 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT  177 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence            79999999988776432  356788999999997 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +.++++|+++.++.|.||++|||.|+.+.++||||.+|++|++++.|+..+++ +++++.++.|+.
T Consensus       178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~  243 (339)
T COG1135         178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIG  243 (339)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998875 456777777764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-42  Score=253.73  Aligned_cols=141  Identities=35%  Similarity=0.515  Sum_probs=124.2

Q ss_pred             ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.||+.+++.. .+.+  ..++++.++|+++||. +..+.||.+|||||||||+|||||+.+|+++|+|||||+|||+.
T Consensus        93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl  171 (240)
T COG1126          93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL  171 (240)
T ss_pred             hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence            688999987643 2222  2345678899999996 57999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..++++.++++++ .|.|.|+|||+|.++.+.||||++|++|+++++|+|++++. +.++-.+.|+.
T Consensus       172 v~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~FL~  237 (240)
T COG1126         172 VGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS  237 (240)
T ss_pred             HHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHHHHH
Confidence            9999999999986 49999999999999999999999999999999999998764 55666777765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-41  Score=249.47  Aligned_cols=144  Identities=37%  Similarity=0.576  Sum_probs=129.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.|||++.+.+.+.+  ..++++.++++.+||+. ++.+|||++|||||+|||.+||||+.+|+++||||||++|||.+
T Consensus        91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~  170 (309)
T COG1125          91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT  170 (309)
T ss_pred             cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence            7899999887665432  23567899999999974 69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      +.++.+.+++++++.|+|||+||||++++.+++|||++|++|++++.++|+++. ++.+++.+.|++.
T Consensus       171 R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~  238 (309)
T COG1125         171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGE  238 (309)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999975 4556677777654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=249.06  Aligned_cols=142  Identities=35%  Similarity=0.598  Sum_probs=129.6

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.||+...+.+.  .++++.++++.+||. .|.++||++|||||||||.|||||+.+|++||+|||||+|||--+
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR  200 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR  200 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence            68999999998877643  345688999999996 699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      .++.+.|.++.++.++||+|||||++++.++.|||.+|++|+|++.|+|+++. ++.+.|...|..
T Consensus       201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~  266 (386)
T COG4175         201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR  266 (386)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence            99999999999888999999999999999999999999999999999999974 555667777753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-39  Score=238.69  Aligned_cols=143  Identities=34%  Similarity=0.543  Sum_probs=124.4

Q ss_pred             hHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH
Q 046954            2 VADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI   81 (146)
Q Consensus         2 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~   81 (146)
                      |++-+.-++...+.+..++++.++++.+||+..+++++|.+|||||+|||||||||+.+|++||||||||+||+..+.++
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I  180 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI  180 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence            44444444433333334556889999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhhh
Q 046954           82 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL  144 (146)
Q Consensus        82 ~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~  144 (146)
                      +++|.+++++.|.|.|+||||+..+..+||||++|++|++++.++..++.. +.+++++.+++.
T Consensus       181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a  244 (252)
T COG1124         181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEA  244 (252)
T ss_pred             HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988754 467777777654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.8e-39  Score=238.96  Aligned_cols=143  Identities=34%  Similarity=0.535  Sum_probs=127.3

Q ss_pred             ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||+||+.|+++-+.. +.  .++.+..-++.+||.....+.+|++|||||++|++||||++.+|+++++||||+||||.+
T Consensus       101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~  180 (263)
T COG1127         101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS  180 (263)
T ss_pred             chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcch
Confidence            799999998764432 21  133455668899997555899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      ...+-++|+++++..|.|+++||||++.+..+|||+++|.+|+|+..|+++++....+++.+.|+.
T Consensus       181 a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~  246 (263)
T COG1127         181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN  246 (263)
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhc
Confidence            999999999999889999999999999999999999999999999999999998777888888874

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.5e-38  Score=238.89  Aligned_cols=141  Identities=41%  Similarity=0.579  Sum_probs=124.1

Q ss_pred             ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||.+||+||+......    ..+.++.++|+.+.|+ .+.++||.+|||||||||++||||+..|++||||||+++||..
T Consensus        93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~  171 (345)
T COG1118          93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK  171 (345)
T ss_pred             hHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence            7999999998654221    2345788999999996 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      .++.+...|+++.++.|.|+++||||.+++.++||||++|++|+|...|+++++.. +..++...|+
T Consensus       172 vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~  238 (345)
T COG1118         172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFL  238 (345)
T ss_pred             HHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceeccc
Confidence            99999999999998889999999999999999999999999999999999999864 3333433433

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=233.91  Aligned_cols=131  Identities=37%  Similarity=0.559  Sum_probs=120.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+.++|++...+.+.  .++++.++++.+|+. ++.+++|.+|||||||||+||.+|+.+|++|||||||||||+.++
T Consensus        96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~  174 (235)
T COG1122          96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR  174 (235)
T ss_pred             cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHH
Confidence            78999999987766543  346788999999996 579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+++.++++.++.|+|+|++|||++.+..+|||+++|++|+++.+|++.++..
T Consensus       175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            999999999987667999999999999999999999999999999999887754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-37  Score=236.70  Aligned_cols=126  Identities=32%  Similarity=0.489  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHcCCChh--hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           19 ENEVYKLLSLADLDSS--FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .+++.++|+.+|++..  ..+.||++|||||||||.||.||+.+|++||+||||++||...+.+++++|++++++.|.++
T Consensus       128 ~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~ai  207 (316)
T COG0444         128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL  207 (316)
T ss_pred             HHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEE
Confidence            4568889999999743  67999999999999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      |+||||+..+.++||||+||..|+|++.|++++++ ++.|+|++.++..
T Consensus       208 ilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s  256 (316)
T COG0444         208 ILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS  256 (316)
T ss_pred             EEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence            99999999999999999999999999999998865 6788999888753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-37  Score=231.02  Aligned_cols=123  Identities=40%  Similarity=0.601  Sum_probs=111.2

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.+++...+.+  ...+++.++++.+||. ++.+++|++|||||||||+|||||+.+|++|||||||++||..++
T Consensus        88 Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR  166 (248)
T COG1116          88 TVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR  166 (248)
T ss_pred             hHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence            7899999998765432  2345788999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEe
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEV  124 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~  124 (146)
                      ..+.+.+.++.++.++||++||||++++..++|||++|.+  |+|...
T Consensus       167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~  214 (248)
T COG1116         167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE  214 (248)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence            9999999999988899999999999999999999999999  555443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-37  Score=242.68  Aligned_cols=142  Identities=35%  Similarity=0.541  Sum_probs=127.7

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.|||+||+...+...   .++++.++++.++++ ++.+++|.+|||||||||+|||||+.+|++||||||+|+||..-
T Consensus        93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kL  171 (352)
T COG3842          93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL  171 (352)
T ss_pred             cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHH
Confidence            79999999988443222   235799999999996 68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +.++..-++++.++.|+|.|+||||-+++..++|||++|++|+|...|+|++++. +.+.+...|++
T Consensus       172 R~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG  238 (352)
T COG3842         172 REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG  238 (352)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence            9999999999999899999999999999999999999999999999999999865 34456666665

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.4e-36  Score=229.65  Aligned_cols=131  Identities=35%  Similarity=0.460  Sum_probs=115.9

Q ss_pred             ChHHHhhcCccccC---C--C-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRG---K--K-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~---~--~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+|-+.+|...+.   .  + .+.+.+.++++.+|+. ++.++++.+|||||||||.|||||+++|++|||||||++||
T Consensus        92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LD  170 (258)
T COG1120          92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD  170 (258)
T ss_pred             EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccC
Confidence            56777877754321   1  1 2234588899999995 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..++.++++++++++++.|+|||+++||++.+.+|||++++|++|++++.|+|+++..
T Consensus       171 i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            9999999999999998889999999999999999999999999999999999987643

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-36  Score=226.70  Aligned_cols=129  Identities=32%  Similarity=0.457  Sum_probs=115.1

Q ss_pred             ChHHHhhcCccccCC------CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK------KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+|.+.++...+..      +.+.+++.++|+++|+. ++.+++.++|||||+|||.|||||+++|++|+|||||+|+|
T Consensus        93 tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD  171 (254)
T COG1121          93 TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD  171 (254)
T ss_pred             CHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCC
Confidence            788999887543211      12346799999999996 79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.++|++++++ |+||++||||++.+..++|+|++| +++++..|+++++..
T Consensus       172 ~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~  227 (254)
T COG1121         172 VAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT  227 (254)
T ss_pred             HHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence            99999999999999876 999999999999999999999999 567889999988754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.2e-36  Score=236.83  Aligned_cols=141  Identities=37%  Similarity=0.570  Sum_probs=121.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++....+.+  ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~  176 (343)
T TIGR02314        98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            6899999875433322  1235678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|+++++.. +.++..+.|+
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~  241 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI  241 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHH
Confidence            999999999987669999999999999999999999999999999999988753 3444555554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-37  Score=223.17  Aligned_cols=140  Identities=42%  Similarity=0.595  Sum_probs=120.8

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      |++||+++|++..+...  -++.++..|+...|++   +.+++.+..||||||||++|||||+.+|++||||||||+|||
T Consensus       103 SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP  182 (253)
T COG1117         103 SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP  182 (253)
T ss_pred             hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence            68999999988776432  2345777888888864   345567889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      .+..++.++|.++++  ..|||+|||+|..+.+++|+..++..|++++.|++++++ ++.+..++.|.
T Consensus       183 IsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~TedYi  248 (253)
T COG1117         183 ISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRTEDYI  248 (253)
T ss_pred             hhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHHHHHHHh
Confidence            999999999999974  789999999999999999999999999999999999876 45555666654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.2e-36  Score=245.69  Aligned_cols=144  Identities=35%  Similarity=0.523  Sum_probs=126.9

Q ss_pred             ChHHHhhcCccccCC---CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.+++.-++.....   ...++++.++++.++|+..+.++||++|||||||||+|||||+.+|++|++|||||+||+..
T Consensus       385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv  464 (539)
T COG1123         385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV  464 (539)
T ss_pred             cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence            567777766544322   12234688899999998778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      +.++.++|++++++.|.|.+|||||+..+..+||||++|++|+|++.|+.+.++ .+.+++++.++..
T Consensus       465 qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a  532 (539)
T COG1123         465 QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA  532 (539)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888875 4578888887653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-36  Score=236.32  Aligned_cols=142  Identities=34%  Similarity=0.492  Sum_probs=128.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||++|++|++...+.+  ..++++.++.+.+++. ++++++|.+|||||||||+|||||+++|+++|||||+|+||...+
T Consensus        91 tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR  169 (338)
T COG3839          91 TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR  169 (338)
T ss_pred             cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHH
Confidence            7999999999876543  3356789999999995 799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+...|+++.++.|.|+|++|||..++..++|||++|++|+|.+.|+|.++.. +.+.+...|++
T Consensus       170 ~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG  235 (338)
T COG3839         170 VLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIG  235 (338)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence            999999999998889999999999999999999999999999999999999864 44445566654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.9e-36  Score=223.34  Aligned_cols=121  Identities=37%  Similarity=0.562  Sum_probs=105.8

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.|||.+++.+.+.+.  ..+++..+++.+|+.+...+++|.+|||||||||+|||||+.+|++|++||||++||..+.
T Consensus        99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~  178 (226)
T COG1136          99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA  178 (226)
T ss_pred             CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence            78999998776554432  3456788899999974444488999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      +.+++++.+++++.|+|+|+||||+..+ .+|||++.|++|++.
T Consensus       179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~  221 (226)
T COG1136         179 KEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeee
Confidence            9999999999988899999999998766 579999999999953

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-36  Score=220.64  Aligned_cols=129  Identities=31%  Similarity=0.511  Sum_probs=118.5

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.|+..+++...  .+.++.++.+.+++. ++.++.++.||.||||||+|||||+++|++++|||||+|||..+.
T Consensus        91 T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~  169 (245)
T COG4555          91 TARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR  169 (245)
T ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence            78999999887776533  356788899999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+.+.++++++ .|++|||+||.|++++.+||||++|++|+++..|+++.+.
T Consensus       170 r~~~dfi~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~  221 (245)
T COG4555         170 RKFHDFIKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD  221 (245)
T ss_pred             HHHHHHHHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence            999999999975 5999999999999999999999999999999999998764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-36  Score=223.43  Aligned_cols=130  Identities=28%  Similarity=0.403  Sum_probs=115.8

Q ss_pred             ChHHHhhcCccccC--------C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRG--------K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~--------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||.+|+..+...+.        .  ..++..+.++|+++|+. +++..+..+|||||+|||+|||||+++|+++|.|||+
T Consensus        97 sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv  175 (258)
T COG3638          97 SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV  175 (258)
T ss_pred             HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence            57899988753321        1  12344577899999995 5788889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ++|||.+.+.+++.|++++++.|.|+|++.|+++.+.+|||||+-|++|+|+++|++.++.
T Consensus       176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~  236 (258)
T COG3638         176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT  236 (258)
T ss_pred             cccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence            9999999999999999999989999999999999999999999999999999999998764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-35  Score=234.67  Aligned_cols=142  Identities=28%  Similarity=0.443  Sum_probs=123.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+  ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        92 tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r  170 (356)
T PRK11650         92 SVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR  170 (356)
T ss_pred             CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            7899999986543322  1235678899999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus       171 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g  236 (356)
T PRK11650        171 VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIG  236 (356)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence            999999999987669999999999999999999999999999999999998754 33445555544

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-35  Score=233.28  Aligned_cols=142  Identities=30%  Similarity=0.484  Sum_probs=123.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.|+...++..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        94 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r  172 (351)
T PRK11432         94 SLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR  172 (351)
T ss_pred             CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence            6899999986544322  2245688899999996 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|+|+|+||||.+++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus       173 ~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g  238 (351)
T PRK11432        173 RSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMG  238 (351)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence            999999999987679999999999999999999999999999999999998754 33445566654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.1e-35  Score=234.43  Aligned_cols=142  Identities=32%  Similarity=0.455  Sum_probs=122.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+  ....++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r  173 (362)
T TIGR03258        95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR  173 (362)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence            6899999986544322  1235688899999996 588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKH-GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~-g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++. |.|+|+||||++++..+||||++|++|++++.|+++++... .+.+...|++
T Consensus       174 ~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g  240 (362)
T TIGR03258       174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLG  240 (362)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence            99999999998765 89999999999999999999999999999999999987543 3344444543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=2e-35  Score=211.63  Aligned_cols=132  Identities=38%  Similarity=0.454  Sum_probs=119.7

Q ss_pred             ChHHHhhcCccccC--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.+|....-  ....+++++.++.++|+. .+.++.|.+|||||||||++||+|+++-++++||||||+|||.-+
T Consensus        87 tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR  165 (231)
T COG3840          87 TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR  165 (231)
T ss_pred             hhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence            68999999864321  123456789999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      .++..++.+++++.+.|++||||.++++.+++++++++++|+|.+.|+.+++...
T Consensus       166 ~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~  220 (231)
T COG3840         166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG  220 (231)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999887654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=2.6e-35  Score=233.72  Aligned_cols=141  Identities=36%  Similarity=0.572  Sum_probs=121.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+..  ...+++.++++.++|+ .+.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus        87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r  165 (363)
T TIGR01186        87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR  165 (363)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            7899999876544322  1245688899999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ..+.+.+.+++++.|+|||++|||++++.++||||++|++|++++.|+++++.. +.+++...|+
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~  230 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI  230 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence            999999999976668999999999999999999999999999999999988753 3344444443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-35  Score=233.20  Aligned_cols=142  Identities=37%  Similarity=0.536  Sum_probs=123.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+  ....++.++++.++++ ++.++++.+|||||||||+|||||+.+|+++||||||++||+..+
T Consensus        92 tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r  170 (353)
T TIGR03265        92 TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR  170 (353)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            6899999986543322  2245688999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus       171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g  236 (353)
T TIGR03265       171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG  236 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence            999999999987679999999999999999999999999999999999998764 33445555543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=6.2e-35  Score=229.44  Aligned_cols=143  Identities=24%  Similarity=0.402  Sum_probs=121.3

Q ss_pred             ChHHHhhcCccccC--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.+|+.++.....  ..  ...+++.++++.+++.....++++++|||||+|||+|||||+.+|++||+||||++||+.
T Consensus       116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~  195 (331)
T PRK15079        116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS  195 (331)
T ss_pred             CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence            57888876543221  11  123457788999999545789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      ++..+.++|+++.++.|.|+|+||||++.+..+||||++|.+|++++.|+++++. ++.+++...++.
T Consensus       196 ~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~  263 (331)
T PRK15079        196 IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS  263 (331)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence            9999999999998766999999999999999999999999999999999998875 455677776653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=6.9e-35  Score=232.31  Aligned_cols=142  Identities=32%  Similarity=0.510  Sum_probs=122.9

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus       102 tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r  180 (375)
T PRK09452        102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR  180 (375)
T ss_pred             CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            68999999865433221  234678899999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus       181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g  246 (375)
T PRK09452        181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG  246 (375)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence            999999999987679999999999999999999999999999999999988754 33445555554

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=239.88  Aligned_cols=125  Identities=30%  Similarity=0.486  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHcCCChhhh-cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           19 ENEVYKLLSLADLDSSFL-SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      .+++.++++.+|++.... ++||++|||||||||.||+||+.+|++||+||||++||+..+.+++++|++++++.|+++|
T Consensus       130 ~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l  209 (539)
T COG1123         130 RKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL  209 (539)
T ss_pred             HHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence            456788999999974333 4699999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +||||+..+.++||||+||++|++++.|+++++. ++.|+|+..++.
T Consensus       210 ~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~  256 (539)
T COG1123         210 FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLA  256 (539)
T ss_pred             EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHh
Confidence            9999999999999999999999999999999975 567788777654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.6e-35  Score=226.33  Aligned_cols=129  Identities=35%  Similarity=0.547  Sum_probs=117.2

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.|.+..++.+  ...+++.++++.++|.. ..++++++||+|||||++||+||+++|+++||||||+||||.++
T Consensus        94 T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~  172 (293)
T COG1131          94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESR  172 (293)
T ss_pred             cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHH
Confidence            7899999988777643  23567999999999974 55888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ..++++|++++++.|+||+++||.+++++.+||||++|++|++++.|+++++
T Consensus       173 ~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l  224 (293)
T COG1131         173 REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL  224 (293)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            9999999999876448999999999999999999999999999999988765

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.2e-34  Score=229.56  Aligned_cols=142  Identities=35%  Similarity=0.498  Sum_probs=121.8

Q ss_pred             ChHHHhhcCcccc----CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||.||+.|+....    ...  ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus        90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD  168 (353)
T PRK10851         90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD  168 (353)
T ss_pred             cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            6899999876432    111  1235678899999996 58899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +.++..+.+.|+++.++.|+|+|++|||++++..+||||++|++|++++.|+++++.. +.+.+...|++
T Consensus       169 ~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g  238 (353)
T PRK10851        169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMG  238 (353)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence            9999999999999987668999999999999999999999999999999999988754 33445555543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1e-34  Score=217.99  Aligned_cols=136  Identities=37%  Similarity=0.522  Sum_probs=115.1

Q ss_pred             ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.||+.++..... ..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~  171 (235)
T cd03261          93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA  171 (235)
T ss_pred             cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            67889887643221 11  1134577889999996 56789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      +..+.+.|++++++.|+|||++||+++++..+||++++|++|++++.|+++++....+++
T Consensus       172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  231 (235)
T cd03261         172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPL  231 (235)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCChh
Confidence            999999999997645899999999999999999999999999999999988775443333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-34  Score=226.36  Aligned_cols=125  Identities=27%  Similarity=0.468  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.++++.+|+.....++++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|.+++++.|.|+|+
T Consensus       131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~  210 (327)
T PRK11308        131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF  210 (327)
T ss_pred             HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence            34678899999996446799999999999999999999999999999999999999999999999999998767999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      ||||+..+.++||+|++|++|+|++.|+++++. ++.+++++.++.
T Consensus       211 iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~  256 (327)
T PRK11308        211 ISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLS  256 (327)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999999999999998875 456778777664

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-34  Score=229.65  Aligned_cols=142  Identities=31%  Similarity=0.495  Sum_probs=122.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.|+....+.+  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus       107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r  185 (377)
T PRK11607        107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR  185 (377)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            6899999986543322  1235678899999996 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|.|+|++|||++++..+|||+++|++|++++.|+++++... .+.+...|++
T Consensus       186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g  251 (377)
T PRK11607        186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG  251 (377)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence            9999999998876799999999999999999999999999999999999887543 3344455543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.9e-34  Score=207.59  Aligned_cols=124  Identities=31%  Similarity=0.476  Sum_probs=113.4

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||++|++...+.+.  .++++.++|+.+||. +..+..|.+|||||||||+||||++++|++||.||||.+|||...
T Consensus        95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s  173 (223)
T COG2884          95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS  173 (223)
T ss_pred             hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence            79999999988776543  356788999999996 678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      ..+++++.++.+ .|+||++.|||.+.+..+..|++.|++|+++.+..
T Consensus       174 ~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         174 WEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            999999999986 59999999999999999999999999999987543

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-34  Score=225.05  Aligned_cols=125  Identities=28%  Similarity=0.468  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           19 ENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .+++.++++.+|+..  ...++++++|||||||||+|||||+.+|++||+||||++||+.++..++++|++++++.|.|+
T Consensus       128 ~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~ti  207 (326)
T PRK11022        128 RQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMAL  207 (326)
T ss_pred             HHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            356788999999962  356889999999999999999999999999999999999999999999999999987679999


Q ss_pred             EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      |+||||++.+.++||||++|.+|+|++.|+++++. ++.++++..++.
T Consensus       208 l~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~  255 (326)
T PRK11022        208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR  255 (326)
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence            99999999999999999999999999999998875 456677776653

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-34  Score=223.09  Aligned_cols=131  Identities=32%  Similarity=0.529  Sum_probs=115.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+....+..  ...+++.++++.+|+..++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       122 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~  201 (305)
T PRK13651        122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV  201 (305)
T ss_pred             cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            6889998876443322  12356788999999964578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+.+.|.++++ .|+|||+||||++.+.++||||++|++|++++.|+++++..
T Consensus       202 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        202 KEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999975 59999999999999999999999999999999999887643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-34  Score=227.75  Aligned_cols=142  Identities=32%  Similarity=0.493  Sum_probs=121.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus        91 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~  169 (369)
T PRK11000         91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  169 (369)
T ss_pred             CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            6899999875433322  1234678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|.|+|++|||++++..+||++++|++|++++.|+++++.. +.+.+...|++
T Consensus       170 ~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g  235 (369)
T PRK11000        170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG  235 (369)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence            999999999976568999999999999999999999999999999999988754 33445555544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.5e-34  Score=227.81  Aligned_cols=141  Identities=31%  Similarity=0.537  Sum_probs=121.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+..  ....++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       122 Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r  200 (382)
T TIGR03415       122 TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR  200 (382)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            6899998875433322  1234678899999996 588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ..+.+.|.+++++.|+|||+||||++++.++||||++|++|++++.|+++++.. +...+...|.
T Consensus       201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~  265 (382)
T TIGR03415       201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV  265 (382)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence            999999999986669999999999999999999999999999999999988753 3344555554

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.3e-34  Score=225.05  Aligned_cols=144  Identities=32%  Similarity=0.472  Sum_probs=125.9

Q ss_pred             ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||.+-|.-|+......    ...+++.++++.+|++..-.++||+++|||||||++||||++.+|++++||||||+||..
T Consensus       381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S  460 (534)
T COG4172         381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS  460 (534)
T ss_pred             CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence            4555565555443321    224568889999999977889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      .+.++.++|+++.++.|.+-+|||||+..+..+||+|+||++|+||+.|+.++++ ++.++|++.++++
T Consensus       461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L~~a  529 (534)
T COG4172         461 VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAA  529 (534)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999875 5677888877654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=6e-34  Score=223.79  Aligned_cols=124  Identities=27%  Similarity=0.428  Sum_probs=111.7

Q ss_pred             HHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           20 NEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        20 ~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      +++.++++.++++.  ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|++++++.|.|+|
T Consensus       137 ~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til  216 (330)
T PRK09473        137 EESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII  216 (330)
T ss_pred             HHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence            45778899999963  2457899999999999999999999999999999999999999999999999999876699999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +||||++.+.++||||++|++|+|++.|+++++. .+.+++...++.
T Consensus       217 ~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~  263 (330)
T PRK09473        217 MITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLN  263 (330)
T ss_pred             EEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999998875 456778877764

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=4e-34  Score=222.75  Aligned_cols=129  Identities=32%  Similarity=0.478  Sum_probs=113.8

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.+....++...  ...++.++++.+++. ...++++++||||||||++||+||+++|++|||||||+|||+.++
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~  174 (306)
T PRK13537         96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR  174 (306)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence            68899987554443321  234577889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.++++|+++++ .|+|||++||+++++.++||||++|++|++++.|+++++.
T Consensus       175 ~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        175 HLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999975 4999999999999999999999999999999999988763

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-34  Score=205.44  Aligned_cols=141  Identities=35%  Similarity=0.462  Sum_probs=119.6

Q ss_pred             ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.||+.-++. ..+.+  ...++++.+|.++|+. +..+.||..|||||+||++|||||+.+|+++++|||||+|||+-
T Consensus       109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPEl  187 (256)
T COG4598         109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL  187 (256)
T ss_pred             HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHH
Confidence            46677655432 22222  2345688899999996 57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      .-++++.++++++ +|+|.+++||.|.++...+..|++|++|.|-++|+|++++. +..+-.+.|+.
T Consensus       188 VgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S~RlkqFls  253 (256)
T COG4598         188 VGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQFLS  253 (256)
T ss_pred             HHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCCHHHHHHHH
Confidence            9999999999986 59999999999999999999999999999999999999864 44455566654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-34  Score=220.21  Aligned_cols=131  Identities=35%  Similarity=0.567  Sum_probs=114.2

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+...  ..+++.++++.++|...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~  181 (290)
T PRK13634        102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR  181 (290)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            67899988654332221  2345788999999964567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.++|++++++.|.|||++|||++++.++||||++|++|++++.|+++++.
T Consensus       182 ~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  234 (290)
T PRK13634        182 KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF  234 (290)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999997656999999999999999999999999999999999987753

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.6e-34  Score=222.51  Aligned_cols=141  Identities=32%  Similarity=0.539  Sum_probs=120.1

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.|+...++...  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus        58 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~  136 (325)
T TIGR01187        58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR  136 (325)
T ss_pred             cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence            68899988754332221  234678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      ..+.+.|+++.++.|+|+|+|||+++++..+||++++|++|+++..|+++++... ...+...|+
T Consensus       137 ~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~  201 (325)
T TIGR01187       137 DQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI  201 (325)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhc
Confidence            9999999999876699999999999999999999999999999999999887543 334444444

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-34  Score=213.68  Aligned_cols=141  Identities=28%  Similarity=0.569  Sum_probs=122.7

Q ss_pred             ChHHHhhcCcccc-------C-------CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954            1 TVADNIRYGPQLR-------G-------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLL   66 (146)
Q Consensus         1 tv~eni~~~~~~~-------~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll   66 (146)
                      ||.||+..+...+       .       .....+++..+|+++||. +..+++.++||+|||+|+.|||||+.+|++|+|
T Consensus        95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL  173 (250)
T COG0411          95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLL  173 (250)
T ss_pred             cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence            7889998874311       0       011245688899999996 689999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      |||.+||.+.....+.+.|++++++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++.++ +...++|++
T Consensus       174 DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d-p~VieAYLG  249 (250)
T COG0411         174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN-PRVIEAYLG  249 (250)
T ss_pred             cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC-HHhHHHhcC
Confidence            9999999999999999999999876689999999999999999999999999999999999998754 445667664

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-33  Score=222.78  Aligned_cols=140  Identities=39%  Similarity=0.570  Sum_probs=118.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++...++..  ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~  176 (343)
T PRK11153         98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            6789998865433322  1234677899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHH
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF  141 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~  141 (146)
                      ..+.+.|++++++.|+|||++||+++++.++||++++|++|++++.|+++++... .......|
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  240 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF  240 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHH
Confidence            9999999999765689999999999999999999999999999999998877432 23344434

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-33  Score=226.32  Aligned_cols=141  Identities=38%  Similarity=0.583  Sum_probs=120.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r  200 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR  200 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            6889998875433322  1234677899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+++++.. +.+.+...|+
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~  265 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF  265 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHH
Confidence            999999999976568999999999999999999999999999999999888743 3344544444

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-33  Score=218.19  Aligned_cols=131  Identities=34%  Similarity=0.550  Sum_probs=114.1

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCC-hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||++|+.++....+...  ..+++.++++.+|+. .++.++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus       100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~  179 (287)
T PRK13637        100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG  179 (287)
T ss_pred             cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence            68899987654333221  234578899999995 246789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +..+.++|.+++++.|.|||++||+++++..+||||++|++|++++.|+++++.
T Consensus       180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999997656899999999999999999999999999999999987753

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.9e-34  Score=220.35  Aligned_cols=128  Identities=30%  Similarity=0.490  Sum_probs=113.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.+....++..  ...+++.++++.+++. +..++++.+|||||||||+||+||+++|++|||||||+|||+.++
T Consensus        82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~  160 (302)
T TIGR01188        82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR  160 (302)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            6789988765443322  1234678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.+++.|+++++ .|+|||++||+++++.++||+|++|++|+++..|+++++
T Consensus       161 ~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l  211 (302)
T TIGR01188       161 RAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL  211 (302)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999975 499999999999999999999999999999999998765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.3e-33  Score=211.19  Aligned_cols=140  Identities=37%  Similarity=0.537  Sum_probs=116.7

Q ss_pred             ChHHHhhcCccccCC----C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK----K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||.||+.++....+.    .  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus        90 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD  168 (239)
T cd03296          90 TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD  168 (239)
T ss_pred             CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            678999876432211    1  1124567889999995 57889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF  141 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~  141 (146)
                      +.+++.+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.. +..+....+
T Consensus       169 ~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~  236 (239)
T cd03296         169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSF  236 (239)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCCcHHHHHH
Confidence            9999999999999976558999999999999999999999999999999999887743 233444443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-34  Score=214.10  Aligned_cols=126  Identities=32%  Similarity=0.505  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.++++.+|+..+..+++|++|||||+||++|||||+.+|+++++|||+|+||...+.++.++|.+++++.|.|.+|
T Consensus        86 ~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF  165 (268)
T COG4608          86 RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF  165 (268)
T ss_pred             HHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence            35688999999998778999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      ||||++.+..+||||.+|..|+|++.|+.+++. ++.|++++.++.+
T Consensus       166 IsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a  212 (268)
T COG4608         166 ISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA  212 (268)
T ss_pred             EEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence            999999999999999999999999999998865 5678998887754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=220.39  Aligned_cols=124  Identities=27%  Similarity=0.494  Sum_probs=111.6

Q ss_pred             HHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           20 NEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        20 ~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      +++.++++.+||..  ...++++.+|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+++.++.|.|+|
T Consensus       134 ~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii  213 (330)
T PRK15093        134 RRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL  213 (330)
T ss_pred             HHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            46788999999963  3468899999999999999999999999999999999999999999999999999865699999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +||||++.+.++||||++|++|+|++.|+++++. .+.+++.+.++.
T Consensus       214 ~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~  260 (330)
T PRK15093        214 LISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR  260 (330)
T ss_pred             EEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999998874 455677776654

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-33  Score=217.56  Aligned_cols=130  Identities=36%  Similarity=0.540  Sum_probs=113.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.|+....+.+  ....++.++++.+++...+.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~  180 (288)
T PRK13643        101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR  180 (288)
T ss_pred             hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH
Confidence            6789998875433322  12345778899999953467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.++++ .|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus       181 ~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~  232 (288)
T PRK13643        181 IEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF  232 (288)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999975 4999999999999999999999999999999999988764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.2e-33  Score=213.56  Aligned_cols=142  Identities=28%  Similarity=0.383  Sum_probs=119.3

Q ss_pred             ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++.... ...  ...+++.++++.+++...+.++++.+|||||||||+|||||+++|++|||||||++||+.+
T Consensus       106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~  185 (265)
T TIGR02769       106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL  185 (265)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            5677876543211 111  1234677899999995346788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +..+.+.|.+++++.|+|||++||+++.+..+||++++|++|++++.|+++++....+++.+.+.
T Consensus       186 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  250 (265)
T TIGR02769       186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQ  250 (265)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHHHHH
Confidence            99999999999765589999999999999999999999999999999999888665666666554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-33  Score=222.81  Aligned_cols=131  Identities=30%  Similarity=0.463  Sum_probs=114.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.++..........+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus        91 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~  169 (354)
T TIGR02142        91 SVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE  169 (354)
T ss_pred             cHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence            68899988653221111234578899999996 57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+.|++++++.|+|+|++||+++++..+||++++|++|+++..|+++++..
T Consensus       170 l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (354)
T TIGR02142       170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA  221 (354)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence            9999999976568999999999999999999999999999999999887643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=2.3e-33  Score=208.82  Aligned_cols=129  Identities=30%  Similarity=0.473  Sum_probs=111.6

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+++|+.++...++...  ..+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus        89 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~  167 (220)
T cd03265          89 TGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR  167 (220)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence            57888877543332211  234678899999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..++++++
T Consensus       168 ~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         168 AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            9999999999765589999999999999999999999999999988877653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=4.4e-33  Score=213.29  Aligned_cols=142  Identities=32%  Similarity=0.557  Sum_probs=118.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~  196 (269)
T cd03294         118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR  196 (269)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            6788887754322211  1234577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++.+ +...+...|+.
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  262 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFR  262 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence            999999999976558999999999999999999999999999999999888753 33445555543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=221.20  Aligned_cols=127  Identities=31%  Similarity=0.494  Sum_probs=114.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.++..    ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus        92 tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~  166 (352)
T PRK11144         92 KVRGNLRYGMA----KSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE  166 (352)
T ss_pred             cHHHHHHhhhh----hhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence            67888887642    12345688899999996 57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+.|++++++.|+|+|+||||++++..+||++++|++|+++..|+++++..
T Consensus       167 l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~  218 (352)
T PRK11144        167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA  218 (352)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence            9999999987668999999999999999999999999999999999988754

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-33  Score=208.23  Aligned_cols=141  Identities=45%  Similarity=0.677  Sum_probs=118.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.++.....  ....++.++++.+++..++.++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus        92 tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  169 (241)
T PRK14250         92 TVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI  169 (241)
T ss_pred             hHHHHHhcchhhcC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            57788876533221  2234677889999995346788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +.+.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++.. +.+++...|+.
T Consensus       170 l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  233 (241)
T PRK14250        170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ  233 (241)
T ss_pred             HHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHHh
Confidence            9999999876458999999999999999999999999999999999887753 33456666653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=235.05  Aligned_cols=143  Identities=29%  Similarity=0.426  Sum_probs=121.0

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.+|+.++....+. .  ...+++.++++.+|++....++++++|||||||||+|||||+.+|++|||||||++||+.+
T Consensus       419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~  498 (623)
T PRK10261        419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI  498 (623)
T ss_pred             CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            577888765432221 1  1234678899999995346789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +..+.++|++++++.|.|||+||||++++..+||||++|++|++++.|+++++. .+.+++...++.
T Consensus       499 ~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~  565 (623)
T PRK10261        499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA  565 (623)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence            999999999998766999999999999999999999999999999999998875 445667666653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-33  Score=214.98  Aligned_cols=131  Identities=31%  Similarity=0.498  Sum_probs=113.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus       102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~  181 (286)
T PRK13646        102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK  181 (286)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            5789998865332221  12345778899999953467889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.++|++++++.|+|||++||+++++.++||||++|++|++++.|+++++.
T Consensus       182 ~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  234 (286)
T PRK13646        182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF  234 (286)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999997656899999999999999999999999999999999987753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=4.5e-33  Score=206.18  Aligned_cols=124  Identities=42%  Similarity=0.626  Sum_probs=106.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+++|+.++....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~  166 (213)
T cd03259          88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR  166 (213)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5788887754322211  1234577889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|
T Consensus       167 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999997655899999999999999999999999999997654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=221.16  Aligned_cols=127  Identities=35%  Similarity=0.547  Sum_probs=116.9

Q ss_pred             cHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954           18 TENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT   95 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t   95 (146)
                      .++++.++|+.+|+.+  ...+.||++|||||||||.||.||+++|++||.||||++||...+.+|+++|+++.++.|.+
T Consensus       131 Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa  210 (534)
T COG4172         131 ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMA  210 (534)
T ss_pred             HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcE
Confidence            3567888999999963  35688999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954           96 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL  144 (146)
Q Consensus        96 vi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~  144 (146)
                      +++||||+..+.++||||+||.+|++++.|+.+.++ .+.++|++.++..
T Consensus       211 ~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a  260 (534)
T COG4172         211 ILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAA  260 (534)
T ss_pred             EEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence            999999999999999999999999999999998875 5678999887754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=5.7e-33  Score=208.89  Aligned_cols=130  Identities=30%  Similarity=0.445  Sum_probs=111.5

Q ss_pred             ChHHHhhcCccc--------cCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQL--------RGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~--------~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+.+|+.++...        .+.  ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  172 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV  172 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            678888765321        011  11234577889999995 5788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +|||+.++..+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            9999999999999999997655899999999999999999999999999999999887763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-33  Score=217.61  Aligned_cols=130  Identities=30%  Similarity=0.516  Sum_probs=112.9

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+...  ...++.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~  212 (320)
T PRK13631        133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE  212 (320)
T ss_pred             hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence            68899988753222211  2345778899999963578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.++++ .|.|||+|||+++++.++||||++|++|++++.|+++++.
T Consensus       213 ~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~  264 (320)
T PRK13631        213 HEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF  264 (320)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999875 4999999999999999999999999999999999988754

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-33  Score=213.21  Aligned_cols=128  Identities=32%  Similarity=0.507  Sum_probs=112.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.++....+..  ...+++..+++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~  174 (274)
T PRK13647         96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ  174 (274)
T ss_pred             cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence            6789998764332221  1234577889999995 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ..+.+.|++++++ |.|||++||+++++.++|||+++|++|++++.|+++++
T Consensus       175 ~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        175 ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            9999999999764 99999999999999999999999999999999988654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=3.7e-33  Score=220.03  Aligned_cols=129  Identities=33%  Similarity=0.492  Sum_probs=113.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++...  ..+++.++++.+++. +..++++.+||||||||++||+||+++|+++||||||+|||+.++
T Consensus       130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r  208 (340)
T PRK13536        130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR  208 (340)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            67899986544433221  234567889999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..++++|+++++ .|+|||++||+++++.++||+|++|++|+++..|+++++.
T Consensus       209 ~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~  260 (340)
T PRK13536        209 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI  260 (340)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999975 5999999999999999999999999999999999988763

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=6.5e-33  Score=222.51  Aligned_cols=130  Identities=27%  Similarity=0.370  Sum_probs=114.4

Q ss_pred             ChHHHhhcCcccc----C--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR----G--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~----~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |++||+.++...+    .  .....+++.++++.+++. ++.++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus        93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD  171 (402)
T PRK09536         93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD  171 (402)
T ss_pred             CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence            6889998864321    1  112245688899999996 68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..++++|+++++ .|+|||++||+++++.++|||+++|++|+++..|+++++..
T Consensus       172 ~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~  228 (402)
T PRK09536        172 INHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT  228 (402)
T ss_pred             HHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence            9999999999999986 58999999999999999999999999999999999987643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=6.4e-33  Score=212.33  Aligned_cols=140  Identities=29%  Similarity=0.405  Sum_probs=115.8

Q ss_pred             ChHHHhhcCccccC-CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRG-KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++..... ...  ...++.++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  178 (269)
T PRK11831        100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT  178 (269)
T ss_pred             CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            67888877532211 111  123567789999996 57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      +..+.+.|++++++.|.|||++||+++++.++||++++|++|++++.|+++++.....+....|
T Consensus       179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  242 (269)
T PRK11831        179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQF  242 (269)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHH
Confidence            9999999999976558999999999999999999999999999999999888754333333333

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=8.7e-33  Score=205.67  Aligned_cols=127  Identities=39%  Similarity=0.585  Sum_probs=109.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++...++..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        89 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  167 (220)
T cd03293          89 TVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR  167 (220)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence            6788888764332221  1234678899999995 577889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--CCEEEEeeCcc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKPD  128 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--~G~i~~~g~~~  128 (146)
                      ..+.+.|+++.++.|.|||++||+++++..+||++++|+  +|++++.++.+
T Consensus       168 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         168 EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            999999999866568999999999999999999999999  79999887754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.8e-33  Score=208.80  Aligned_cols=129  Identities=32%  Similarity=0.477  Sum_probs=111.1

Q ss_pred             ChHHHhhcCcccc--------CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+.+|+.++....        +.  ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315        95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            5788887653211        10  11234677889999995 5788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +|||+.++..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+++++
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            999999999999999999765589999999999999999999999999999999988776

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.4e-33  Score=202.58  Aligned_cols=139  Identities=27%  Similarity=0.498  Sum_probs=120.7

Q ss_pred             ChHHHhhcCccccCCCc----cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKKL----TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||.||+...+.......    .+.+.+++++.+++. +..+.+..+||||||+|+.|||||+.+|+++||||||+|.||.
T Consensus        95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi  173 (243)
T COG1137          95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI  173 (243)
T ss_pred             cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence            78999988776654221    223467899999995 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +...+.++++.++. .|..|+++.|+..+...+|||.+++.+|++.++|+++++.++ +...+.|+
T Consensus       174 aV~dIq~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n-~~Vr~~YL  237 (243)
T COG1137         174 AVIDIQRIIKHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN-EDVRRVYL  237 (243)
T ss_pred             hHHHHHHHHHHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC-hhhhhhcc
Confidence            99999999999975 599999999999999999999999999999999999998653 23334444

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-33  Score=214.06  Aligned_cols=130  Identities=32%  Similarity=0.544  Sum_probs=112.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++.......  ...+++.++++.+++...+.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~  181 (287)
T PRK13641        102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR  181 (287)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence            5788988754322221  12345788899999953478899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.++++ .|.|||++||+++++.++||++++|++|+++..|+++++.
T Consensus       182 ~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        182 KEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999975 4999999999999999999999999999999999987653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-33  Score=212.88  Aligned_cols=129  Identities=29%  Similarity=0.501  Sum_probs=112.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.++....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~  176 (279)
T PRK13650         98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR  176 (279)
T ss_pred             cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            6889998875433222  1234678899999995 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|+|||++||+++.+ .+|||+++|++|+++..|+++++.
T Consensus       177 ~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        177 LELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999765699999999999998 579999999999999999987754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-32  Score=206.21  Aligned_cols=142  Identities=32%  Similarity=0.430  Sum_probs=118.5

Q ss_pred             ChHHHhhcCcccc-C-CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++.... . .....+++.++++.++++ ++.++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus        87 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~  165 (232)
T PRK10771         87 TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR  165 (232)
T ss_pred             cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            6788997753211 1 111234678899999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL  144 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  144 (146)
                      ..+.+.|.++.++.|.|+|++||+++++.++||++++|++|++++.|+++++... ......|++.
T Consensus       166 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~-~~~~~~~~~~  230 (232)
T PRK10771        166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG-KASASALLGI  230 (232)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-hhHHHHhhcc
Confidence            9999999998765589999999999999999999999999999999998877543 2344555443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=5.7e-33  Score=208.43  Aligned_cols=129  Identities=30%  Similarity=0.563  Sum_probs=111.7

Q ss_pred             ChHHHhhcCccccCC------------CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeC
Q 046954            1 TVADNIRYGPQLRGK------------KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDE   68 (146)
Q Consensus         1 tv~eni~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE   68 (146)
                      ||.||+.++......            ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||
T Consensus        91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  169 (236)
T cd03219          91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDE  169 (236)
T ss_pred             CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            678898876432211            11133577889999996 57889999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           69 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        69 Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ||+|||+.++..+.+.|.++++ .|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       170 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         170 PAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence            9999999999999999999976 5899999999999999999999999999999999887764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.3e-32  Score=205.53  Aligned_cols=127  Identities=48%  Similarity=0.697  Sum_probs=108.2

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCChhhhcCC--cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLSKT--GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.||+.++....+...   ..+++.++++.+++. +..+++  +.+||||||||++|||||+.+|++|||||||+|||+
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~  174 (227)
T cd03260          96 SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP  174 (227)
T ss_pred             cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence            68899987643332111   234677889999996 455555  599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      .++..+.+.|+++++ . .|||++||+++++..+||++++|++|++++.|+++++
T Consensus       175 ~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         175 ISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            999999999999975 3 8999999999999999999999999999999887653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.6e-33  Score=228.76  Aligned_cols=144  Identities=29%  Similarity=0.427  Sum_probs=120.5

Q ss_pred             ChHHHhhcCccccC--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||.||+.++...+.  ..  ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~  459 (529)
T PRK15134        380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT  459 (529)
T ss_pred             cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence            67888887543221  11  123457789999999634678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhhh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL  144 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~  144 (146)
                      +++.+.+.|++++++.|.|||+||||++++..+||++++|++|++++.|+++++.. +.+++...++..
T Consensus       460 ~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  528 (529)
T PRK15134        460 VQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL  528 (529)
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChHHHHHhhc
Confidence            99999999999976558999999999999999999999999999999999988753 445666666543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-32  Score=212.65  Aligned_cols=130  Identities=29%  Similarity=0.475  Sum_probs=113.7

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.++....+.+.  ..+++..+++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~  177 (283)
T PRK13636         99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV  177 (283)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence            67899987643322221  234578889999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|.|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  230 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  230 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999997655899999999999999999999999999999999987754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=8.9e-33  Score=204.84  Aligned_cols=124  Identities=34%  Similarity=0.532  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.++..........+++.++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus        91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  169 (214)
T cd03297          91 NVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ  169 (214)
T ss_pred             CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            57788876532211111234577899999995 56789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|
T Consensus       170 l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999997655899999999999999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.2e-32  Score=207.56  Aligned_cols=142  Identities=38%  Similarity=0.599  Sum_probs=117.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++....+..  ...+++.++++.+++.. .+.++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  170 (242)
T cd03295          91 TVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT  170 (242)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            6788988754332221  12345778899999963 36789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +..+.+.|.+++++.|+|||++||+++++..+||+|++|++|++++.|+++++.. ..+++...|.
T Consensus       171 ~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  236 (242)
T cd03295         171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFV  236 (242)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHHHh
Confidence            9999999999976458999999999999999999999999999999998877643 2334555554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=7.8e-33  Score=215.16  Aligned_cols=129  Identities=33%  Similarity=0.481  Sum_probs=111.5

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++...  ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~  171 (303)
T TIGR01288        93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR  171 (303)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            67888876433322211  123567789999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       172 ~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  223 (303)
T TIGR01288       172 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI  223 (303)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999975 5999999999999999999999999999999999987763

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.1e-32  Score=204.08  Aligned_cols=124  Identities=32%  Similarity=0.523  Sum_probs=107.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+++|+.++....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~  166 (213)
T cd03301          88 TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR  166 (213)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            6788988764332221  1234577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus       167 ~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999997655899999999999999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.3e-32  Score=206.18  Aligned_cols=130  Identities=39%  Similarity=0.562  Sum_probs=112.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++...++..  ...+.+.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (233)
T cd03258          98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT  176 (233)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence            5788887754322221  1234577889999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            99999999997655899999999999999999999999999999998877653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1e-32  Score=206.91  Aligned_cols=129  Identities=31%  Similarity=0.443  Sum_probs=110.5

Q ss_pred             ChHHHhhcCccc--cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQL--RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~--~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.||+.++...  ....  ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus        70 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~  148 (230)
T TIGR01184        70 TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL  148 (230)
T ss_pred             CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence            678898775321  1111  1133577889999996 5788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ++..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..|+...+
T Consensus       149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            999999999999765689999999999999999999999999999988876554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.8e-32  Score=202.03  Aligned_cols=118  Identities=27%  Similarity=0.455  Sum_probs=104.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++.....  ....++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus        88 tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  164 (205)
T cd03226          88 SVREELLLGLKELD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER  164 (205)
T ss_pred             cHHHHHhhhhhhcC--ccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence            67888877643222  2235688899999996 57889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      +.+.|+++++ .|.|+|++||+++++..+||++++|++|+++
T Consensus       165 l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         165 VGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999975 4899999999999999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-33  Score=195.54  Aligned_cols=139  Identities=34%  Similarity=0.467  Sum_probs=117.9

Q ss_pred             ChHHHhhcC-ccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYG-PQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~-~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.||+.-+ ....+.+.  ...++.++++++.+. ++.|++|-+|||||+|||+|||||+.+|++|++||||++|||+-
T Consensus        98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei  176 (242)
T COG4161          98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI  176 (242)
T ss_pred             HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence            466776543 22333332  234677899999996 68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      ..++.++|++++. .|+|-+++||..+.+.+.+.+|++|++|+|++.|+.+-+.++..+..+.|
T Consensus       177 taqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~y  239 (242)
T COG4161         177 TAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNY  239 (242)
T ss_pred             HHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHHHHH
Confidence            9999999999974 69999999999999999999999999999999999988876654443444

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.4e-32  Score=202.06  Aligned_cols=124  Identities=34%  Similarity=0.454  Sum_probs=107.1

Q ss_pred             ChHHHhhcCcccc-CC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLR-GK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++.... .. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~  164 (211)
T cd03298          86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR  164 (211)
T ss_pred             cHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            6789998764321 11 12244678899999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ..+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus       165 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         165 AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            99999999997656899999999999999999999999999997653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-32  Score=211.76  Aligned_cols=131  Identities=33%  Similarity=0.542  Sum_probs=111.7

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+...  ..+++..+++.++++.++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       107 tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~  186 (289)
T PRK13645        107 TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE  186 (289)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            57888887543222111  1234667889999953578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.++.++.|+|||++||+++++.++||++++|++|++++.|+++++.
T Consensus       187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999997655899999999999999999999999999999999887653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.3e-32  Score=204.08  Aligned_cols=119  Identities=28%  Similarity=0.455  Sum_probs=103.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  174 (216)
T TIGR00960        96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS  174 (216)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            6788888764332221  1234678899999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ..+.+.|.++++ .|.|||++||+++++..+||++++|++|++
T Consensus       175 ~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       175 RDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999975 489999999999999999999999999975

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.3e-32  Score=201.70  Aligned_cols=121  Identities=29%  Similarity=0.552  Sum_probs=106.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++...+..  ..+++.++++.+++. +..++++.+|||||||||+||||++.+|+++||||||+|||+.++..
T Consensus        88 tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  164 (208)
T cd03268          88 TARENLRLLARLLGI--RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE  164 (208)
T ss_pred             cHHHHHHHHHHhcCC--cHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence            678888775432221  345678899999995 57788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.|.++++ .|.|+|++||+++++..+||++++|++|++++.|
T Consensus       165 l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         165 LRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999976 5899999999999999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-32  Score=208.80  Aligned_cols=130  Identities=31%  Similarity=0.507  Sum_probs=112.9

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.+|+.++....+...  ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~  173 (277)
T PRK13652         95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV  173 (277)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            67888876543222211  134577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|++++++.|.|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus       174 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence            99999999997655899999999999999999999999999999999988764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=3.2e-32  Score=203.86  Aligned_cols=130  Identities=28%  Similarity=0.523  Sum_probs=112.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++...++..  ....++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  169 (232)
T cd03218          91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV  169 (232)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence            5788887754322221  1234567889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+.+.|+++++ .|+|||++||+++.+..+||++++|++|+++..|+.+++..
T Consensus       170 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         170 QDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999975 48999999999999999999999999999999998877643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=4.5e-32  Score=202.34  Aligned_cols=125  Identities=38%  Similarity=0.537  Sum_probs=104.1

Q ss_pred             ChHHHhhcCccccCCCcc--H-HH-HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKKLT--E-NE-VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~--~-~~-~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+++|+.++.........  . .. +.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~  179 (228)
T cd03257         100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS  179 (228)
T ss_pred             CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence            578888765432221111  1 12 2468889998534678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ++..+.+.|.+++++.|.|||++||+++.+..+||++++|++|+++..|
T Consensus       180 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            9999999999997655899999999999999999999999999997653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=5.8e-32  Score=205.63  Aligned_cols=141  Identities=35%  Similarity=0.497  Sum_probs=115.2

Q ss_pred             ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |++||+.++.. .....  ...+++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus       108 sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  187 (257)
T PRK10619        108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL  187 (257)
T ss_pred             cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            57888876432 11111  1234677889999996323478899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++.+.+.|+++++ .|+|||++||+++++..+||||++|++|++++.|+++++.. +.+.....|+
T Consensus       188 ~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  252 (257)
T PRK10619        188 VGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFL  252 (257)
T ss_pred             HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCccCHHHHHHh
Confidence            9999999999975 49999999999999999999999999999999999887643 2234444444

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=5.4e-32  Score=204.78  Aligned_cols=139  Identities=35%  Similarity=0.482  Sum_probs=114.8

Q ss_pred             ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++... ....  ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~  179 (250)
T PRK11264        101 TVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL  179 (250)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            578888764321 1111  1234577889999996 56788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF  141 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~  141 (146)
                      +..+.+.|.++++ .|.|||++||+++++.++||++++|++|++++.|+++++.. +.+.....|
T Consensus       180 ~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~  243 (250)
T PRK11264        180 VGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQF  243 (250)
T ss_pred             HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence            9999999999975 48999999999999999999999999999999999888643 233444444

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=7.5e-32  Score=202.04  Aligned_cols=142  Identities=28%  Similarity=0.386  Sum_probs=114.9

Q ss_pred             ChHHHhhcCccccCC-C-ccHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGK-K-LTENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~-~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.+|+.+.....+. . ...+++.++++.+++..  ++.++++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            455666544322221 1 12345788999999952  4678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..|+++++.. +.......|+
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  226 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLL  226 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHHHHH
Confidence            99999999999976558999999999999999999999999999999999988753 2334444443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-32  Score=205.08  Aligned_cols=141  Identities=40%  Similarity=0.610  Sum_probs=116.6

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+||+.++....+. .  ...+.+..+++.+++.   .+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       103 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD  182 (254)
T PRK14273        103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD  182 (254)
T ss_pred             cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence            688999876433221 1  1234567788888873   134688899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +.++..+.+.|.+++ + +.|||++||+++++.++|||+++|++|+++..|+++++. .+.+++...|+.
T Consensus       183 ~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  250 (254)
T PRK14273        183 PISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEYIS  250 (254)
T ss_pred             HHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHhhc
Confidence            999999999999995 3 799999999999999999999999999999999988875 445556655553

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=8e-32  Score=204.96  Aligned_cols=123  Identities=24%  Similarity=0.429  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++
T Consensus       129 ~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~i  208 (258)
T PRK11701        129 ATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV  208 (258)
T ss_pred             HHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence            45678899999953367889999999999999999999999999999999999999999999999999876558999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ||+++++..+||++++|++|++++.|+++++.. +.+++...|+
T Consensus       209 sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~  252 (258)
T PRK11701        209 THDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQLLV  252 (258)
T ss_pred             eCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHH
Confidence            999999999999999999999999999888743 3344555444

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=5.8e-32  Score=203.59  Aligned_cols=130  Identities=37%  Similarity=0.575  Sum_probs=111.8

Q ss_pred             ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.+|+.++.. ..+..  ...+++.++++.+|++ +..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  171 (240)
T PRK09493         93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL  171 (240)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            67888877532 11111  1234577889999995 56789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +..+.+.|.++++ .|+|+|++||+++++..+||++++|++|++++.|+++++..
T Consensus       172 ~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (240)
T PRK09493        172 RHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK  225 (240)
T ss_pred             HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence            9999999999875 48999999999999999999999999999999998887643

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-32  Score=205.65  Aligned_cols=112  Identities=23%  Similarity=0.535  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ..+.++++.+|+. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|+|||++
T Consensus       132 ~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~  210 (255)
T PRK11300        132 DRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLI  210 (255)
T ss_pred             HHHHHHHHhCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            3467788999995 578999999999999999999999999999999999999999999999999999976458999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ||+++++.++||++++|++|+++..|+++++..
T Consensus       211 sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        211 EHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             eCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence            999999999999999999999999999887643

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.4e-32  Score=212.30  Aligned_cols=127  Identities=33%  Similarity=0.513  Sum_probs=112.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++..  ...+++.++++.+|+. +..++++..||||||||++|||||+++|+++||||||+|||+.++
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~  169 (301)
T TIGR03522        91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL  169 (301)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            6789988765444322  1234678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.+++.+++++ + ++|||++||+++++.++||||++|++|+++..|+++++
T Consensus       170 ~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~  219 (301)
T TIGR03522       170 VEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL  219 (301)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999985 3 79999999999999999999999999999999998876

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-32  Score=230.15  Aligned_cols=131  Identities=30%  Similarity=0.428  Sum_probs=113.9

Q ss_pred             ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.||+.++.... +..  ...+++.++++.+|+..  ...++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus       122 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~  201 (623)
T PRK10261        122 TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV  201 (623)
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCH
Confidence            6889998765432 221  12356788999999952  357899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      .++..+.++|++++++.|+|||+||||++++..+||||++|++|++++.|+++++.
T Consensus       202 ~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        202 TIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence            99999999999998666999999999999999999999999999999999987764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6e-32  Score=204.39  Aligned_cols=140  Identities=42%  Similarity=0.607  Sum_probs=115.5

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+. .  ...+++..+++.+++..   +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus        97 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD  176 (247)
T TIGR00972        97 SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD  176 (247)
T ss_pred             CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            678898875433221 1  12345778899999951   45788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++++  ++|||++||+++++..+||++++|++|+++..|+++++.. +.+.....|+
T Consensus       177 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  243 (247)
T TIGR00972       177 PIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKRTEDYI  243 (247)
T ss_pred             HHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHHh
Confidence            9999999999999864  4899999999999999999999999999999999887643 3344444443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.4e-32  Score=202.41  Aligned_cols=128  Identities=28%  Similarity=0.423  Sum_probs=108.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHc-CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ   79 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~   79 (146)
                      |+.+|+.++............+..+++.+ ++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++.
T Consensus        91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  169 (222)
T cd03224          91 TVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE  169 (222)
T ss_pred             cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence            57888887643322111233456677777 464 4678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      .+.+.|+++++ .|+|||++||+++++..+||++++|++|+++..|+++++
T Consensus       170 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         170 EIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            99999999975 589999999999999999999999999999988877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-32  Score=209.16  Aligned_cols=130  Identities=38%  Similarity=0.568  Sum_probs=111.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+...  ..+.+.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  181 (280)
T PRK13649        102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR  181 (280)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            67888877543222211  1234677889999963457889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+.+.|.++++ .|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       182 ~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        182 KELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999975 4899999999999999999999999999999999887653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-32  Score=204.78  Aligned_cols=140  Identities=39%  Similarity=0.608  Sum_probs=115.1

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      |+.||+.++....+...  ..+++.++++.+++.   .+..++++.+|||||+|||+|||||+.+|+++||||||+|||+
T Consensus       108 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~  187 (258)
T PRK14268        108 SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP  187 (258)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence            67889987643322211  123467788988873   2356788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      .++..+.+.|++++ + |.|||++||+++++.++||++++|++|++++.|+++++.. +.+.+.+.|+
T Consensus       188 ~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  253 (258)
T PRK14268        188 ISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYI  253 (258)
T ss_pred             HHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHh
Confidence            99999999999985 3 7999999999999999999999999999999999988753 3444555444

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=6.3e-32  Score=203.04  Aligned_cols=140  Identities=29%  Similarity=0.446  Sum_probs=114.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+..  ...+.+.++++.+|+. ...++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus        90 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~  168 (236)
T TIGR03864        90 SVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR  168 (236)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence            5788887654332211  1234577889999996 567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC--CCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~~  142 (146)
                      ..+.+.|.+++++.|.|+|++||+++++.. ||++++|++|++++.|+++++...  .......|.
T Consensus       169 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  233 (236)
T TIGR03864       169 AAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL  233 (236)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence            999999999975458999999999999975 999999999999999988776432  123444444

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4.5e-32  Score=201.60  Aligned_cols=127  Identities=32%  Similarity=0.551  Sum_probs=109.7

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++...++...  ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  169 (220)
T cd03263          91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR  169 (220)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHH
Confidence            57888877543332211  234577889999995 577889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.+.+.|.++++  +.|||++||+++.+.++||++++|++|++++.|+++++
T Consensus       170 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         170 RAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            999999999864  59999999999999999999999999999998887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1e-31  Score=203.73  Aligned_cols=125  Identities=23%  Similarity=0.421  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      ...+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.++.|.|+|+
T Consensus       125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~  204 (253)
T TIGR02323       125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII  204 (253)
T ss_pred             HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            34577889999995346788999999999999999999999999999999999999999999999999987655899999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +||+++++..+||++++|++|++++.|+++++.. +.+++.+.|++
T Consensus       205 vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~~~~~~~~l~  250 (253)
T TIGR02323       205 VTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVS  250 (253)
T ss_pred             EeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence            9999999999999999999999999998887643 34556666654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.3e-31  Score=203.56  Aligned_cols=124  Identities=28%  Similarity=0.431  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCChh--hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           19 ENEVYKLLSLADLDSS--FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .+++.++++.+++...  +.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.||
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti  194 (254)
T PRK10418        115 DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGM  194 (254)
T ss_pred             HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEE
Confidence            3567889999999631  46888999999999999999999999999999999999999999999999999976568999


Q ss_pred             EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      |++||+++++..+||++++|++|+++..|+++++... .+++...|.
T Consensus       195 l~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  241 (254)
T PRK10418        195 LLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLV  241 (254)
T ss_pred             EEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCCCHHHHHHH
Confidence            9999999999999999999999999999998887543 233444443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.7e-32  Score=201.84  Aligned_cols=119  Identities=36%  Similarity=0.509  Sum_probs=102.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (218)
T cd03255          98 TALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG  176 (218)
T ss_pred             cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence            6788888764433221  1234677899999996 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ..+.+.|++++++.|+|||++||+++++. +||++++|++|++
T Consensus       177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999997645899999999999987 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.4e-32  Score=204.14  Aligned_cols=141  Identities=38%  Similarity=0.551  Sum_probs=116.7

Q ss_pred             ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.+|+.++... .+..  ...+.+.++++.+++. +..++++.+|||||+||++|||||+.+|+++||||||+|||+.+
T Consensus       103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  181 (252)
T TIGR03005       103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL  181 (252)
T ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            577888764221 1111  1234577889999995 57888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +..+.+.|.+++++.|.|+|++||+++++..+||++++|++|++++.|+++++.. +.++....|+
T Consensus       182 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  247 (252)
T TIGR03005       182 VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTREFL  247 (252)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence            9999999999976558999999999999999999999999999999999887643 3344555554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-31  Score=204.69  Aligned_cols=123  Identities=36%  Similarity=0.530  Sum_probs=108.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++..  .  ....++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++..
T Consensus        97 tv~enl~~~~~--~--~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~  171 (257)
T PRK11247         97 KVIDNVGLGLK--G--QWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE  171 (257)
T ss_pred             cHHHHHHhccc--c--hHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence            57888877531  1  1245678899999996 57789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD  128 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~  128 (146)
                      +.+.|.++.++.|.|||++||+++++..+||+|++|++|+++.+++.+
T Consensus       172 l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999987656899999999999999999999999999999888754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=208.61  Aligned_cols=127  Identities=32%  Similarity=0.494  Sum_probs=116.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+.|+.|+.+..    .......+.+.+|+. ++.+++|..|||||||||+|+|||+..|++|+||||.|+||..-+++
T Consensus        92 tVrgNL~YG~~~~----~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E  166 (352)
T COG4148          92 TVRGNLRYGMWKS----MRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE  166 (352)
T ss_pred             EEecchhhhhccc----chHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence            5778888876432    345678899999995 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ++..+.++.++.+.-|++|||.++++.++||+|++|++|++.+.|..+++.+
T Consensus       167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence            9999999999989999999999999999999999999999999999888754

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.98  E-value=5.4e-32  Score=200.94  Aligned_cols=123  Identities=31%  Similarity=0.512  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++..  ...+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus        94 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  172 (218)
T cd03266          94 TARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT  172 (218)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHH
Confidence            6788887654333221  1234677899999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.+.|.++++ .|+|||++||+++++..+||++++|++|++++.|
T Consensus       173 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         173 RALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            999999999965 4899999999999999999999999999997643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=1.3e-31  Score=202.89  Aligned_cols=140  Identities=35%  Similarity=0.555  Sum_probs=114.9

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+..   ...+.+.++++.+++..   +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus        99 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD  178 (250)
T PRK14245         99 SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD  178 (250)
T ss_pred             cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            5788887754332211   12345678889898842   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++. + ++|||++||+++++.++||++++|++|++++.|+++++.+ +.++....|+
T Consensus       179 ~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~  245 (250)
T PRK14245        179 PISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYI  245 (250)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCChHHHHhh
Confidence            999999999999984 3 7999999999999999999999999999999999988753 3344444554

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=7.1e-32  Score=206.70  Aligned_cols=129  Identities=29%  Similarity=0.427  Sum_probs=110.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+...  ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~  172 (271)
T PRK13638         94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR  172 (271)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            35677766533222111  123567789999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.++++ .|.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       173 ~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (271)
T PRK13638        173 TQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF  224 (271)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999975 4899999999999999999999999999999999887653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.4e-32  Score=205.44  Aligned_cols=131  Identities=29%  Similarity=0.402  Sum_probs=112.3

Q ss_pred             ChHHHhhcCcccc-C----C-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR-G----K-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~-~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++.... .    . ....+++..+++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD  179 (265)
T PRK10575        101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD  179 (265)
T ss_pred             cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            5788888753211 0    1 11234577899999995 57889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+++.+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus       180 ~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            9999999999999976558999999999999999999999999999999998877643

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=4.4e-32  Score=203.94  Aligned_cols=130  Identities=31%  Similarity=0.435  Sum_probs=108.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHc-CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ   79 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~   79 (146)
                      ||.+|+.++..........+.+.++++.+ ++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++.
T Consensus        96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~  174 (237)
T PRK11614         96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ  174 (237)
T ss_pred             cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence            57888877532211111223456667777 464 4567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      .+.+.|+++++ .|.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus       175 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        175 QIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             HHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            99999999875 49999999999999999999999999999999999988753

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.98  E-value=9.4e-32  Score=204.80  Aligned_cols=131  Identities=32%  Similarity=0.445  Sum_probs=112.0

Q ss_pred             ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCC
Q 046954            1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA------NEPEVLLLDEPTSA   72 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~------~~p~llllDEPt~~   72 (146)
                      |++||+.++......  .....++.++++.+++. ++.++++.+|||||||||+|||||+      .+|++|||||||+|
T Consensus        92 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~  170 (258)
T PRK13548         92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA  170 (258)
T ss_pred             CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCccc
Confidence            678898875432211  11234577889999995 5788999999999999999999999      59999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ||+.++..+.+.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       171 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        171 LDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            999999999999999974458999999999999999999999999999999998877643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.98  E-value=9.3e-32  Score=205.72  Aligned_cols=123  Identities=24%  Similarity=0.399  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +++.++++.+++.....++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++
T Consensus       127 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviiv  206 (267)
T PRK15112        127 KQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV  206 (267)
T ss_pred             HHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence            45778899999953467888999999999999999999999999999999999999999999999999976558999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      ||+++++..+||++++|++|+++..|+++++... .++....++
T Consensus       207 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  250 (267)
T PRK15112        207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLI  250 (267)
T ss_pred             eCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999999999998877543 344444444

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.98  E-value=1.3e-31  Score=204.17  Aligned_cols=129  Identities=26%  Similarity=0.402  Sum_probs=111.8

Q ss_pred             ChHHHhhcCcccc--------C--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLR--------G--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~--------~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+.+|+.++....        .  ......++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       102 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  180 (262)
T PRK09984        102 SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI  180 (262)
T ss_pred             cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCcc
Confidence            5788887653210        0  011234578899999995 5788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +|||+.+++.+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       181 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            999999999999999999765589999999999999999999999999999999998876

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=9e-32  Score=198.70  Aligned_cols=142  Identities=29%  Similarity=0.390  Sum_probs=117.3

Q ss_pred             ChHHHhhcCccccCC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954            1 TVADNIRYGPQLRGK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ   79 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~   79 (146)
                      ||.||+.++...... .......+.+++.|-.-.+..+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+
T Consensus        94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~  173 (237)
T COG0410          94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE  173 (237)
T ss_pred             cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence            799999998654332 1111114555555532135788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      ++.+.|++++++.|.||++|.++...+.+++||.++|++|+|+.+|+.+++... +...+.|++
T Consensus       174 ~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~-~~v~~~yLg  236 (237)
T COG0410         174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD-PDVREAYLG  236 (237)
T ss_pred             HHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC-HHHHHHhhC
Confidence            999999999877689999999999999999999999999999999999998653 335555553

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.3e-32  Score=207.27  Aligned_cols=129  Identities=33%  Similarity=0.506  Sum_probs=111.7

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+...  ..+++.++++.+++. ++.++++.+|||||+||++|||||+.+|++|||||||+|||+.++
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~  179 (282)
T PRK13640        101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK  179 (282)
T ss_pred             CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            68899987643332211  124577889999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|+|||++||+++++. +||++++|++|++++.|+++++.
T Consensus       180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        180 EQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999997655899999999999985 79999999999999999987653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.98  E-value=8.8e-32  Score=199.27  Aligned_cols=121  Identities=34%  Similarity=0.509  Sum_probs=103.2

Q ss_pred             ChHHHhhcCccccC----C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRG----K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~----~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++.....    .  ....+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  164 (213)
T cd03235          86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD  164 (213)
T ss_pred             cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            67899887543211    1  11234677899999995 57889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      +.++..+.+.|+++++ .|.|||++||+++++.++||++++|++| +++.
T Consensus       165 ~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         165 PKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            9999999999999976 5899999999999999999999999886 4443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.1e-31  Score=206.71  Aligned_cols=129  Identities=29%  Similarity=0.479  Sum_probs=111.9

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.|+....+..  ...+++..+++.+|+. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus       102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~  180 (280)
T PRK13633        102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR  180 (280)
T ss_pred             cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            4678888765432221  1234578889999995 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|.|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus       181 ~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        181 REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence            999999999976569999999999999976 9999999999999999988764

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.3e-31  Score=201.91  Aligned_cols=140  Identities=34%  Similarity=0.489  Sum_probs=114.9

Q ss_pred             ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++. ...+..  ....++.++++.+|+. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus        98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~  176 (242)
T PRK11124         98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI  176 (242)
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHH
Confidence            5778886432 111211  1234577889999996 57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +..+.+.|.++.+ .|+|+|++||+++++..+||++++|++|++++.|+++++..+.+.....++
T Consensus       177 ~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~  240 (242)
T PRK11124        177 TAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKNYL  240 (242)
T ss_pred             HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCcccHHHHHhh
Confidence            9999999999865 589999999999999999999999999999999998877544344444443

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.98  E-value=1.9e-31  Score=198.85  Aligned_cols=125  Identities=30%  Similarity=0.544  Sum_probs=109.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+++|+.++....+  ....++.++++.+++. ++.++++.+|||||+||++||||++.+|+++||||||+|||+.+++.
T Consensus        86 t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~  162 (223)
T TIGR03740        86 TARENLKVHTTLLG--LPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE  162 (223)
T ss_pred             CHHHHHHHHHHHcC--CCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHH
Confidence            57888876543322  1345678899999996 57888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL  129 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  129 (146)
                      +.+.|.++++ .|.|||++||+++++.++||++++|++|+++..|++.+
T Consensus       163 l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       163 LRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            9999999975 48999999999999999999999999999999888754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1e-31  Score=206.28  Aligned_cols=129  Identities=34%  Similarity=0.572  Sum_probs=112.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. ++.++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus        95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~  173 (275)
T PRK13639         95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA  173 (275)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            5788887653222211  1234577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++ |.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       174 ~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        174 SQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999754 999999999999999999999999999999999988764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.98  E-value=1.1e-31  Score=198.54  Aligned_cols=122  Identities=26%  Similarity=0.452  Sum_probs=105.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+.....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~  166 (211)
T cd03264          88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER  166 (211)
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5788887754332221  1234577889999995 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ..+.+.|+++++  +.|||++||+++++.++|||+++|++|++++.|
T Consensus       167 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         167 IRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999974  589999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.98  E-value=2.2e-31  Score=203.77  Aligned_cols=123  Identities=33%  Similarity=0.475  Sum_probs=109.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|+|++
T Consensus       129 ~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv  208 (268)
T PRK10419        129 ARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI  208 (268)
T ss_pred             HHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence            35778899999953467889999999999999999999999999999999999999999999999999976558999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      ||+++++..+||++++|++|++++.|+++++....+++...+.
T Consensus       209 sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  251 (268)
T PRK10419        209 THDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ  251 (268)
T ss_pred             ECCHHHHHHhCCEEEEEECCEEeeeCChhhccCCCCHHHHHHH
Confidence            9999999999999999999999999999887655555655554

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.9e-31  Score=202.92  Aligned_cols=126  Identities=33%  Similarity=0.513  Sum_probs=108.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+..  ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~  164 (255)
T PRK11248         86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR  164 (255)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            6788987754322221  1234578899999996 577889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--CCEEEEeeCc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKP  127 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--~G~i~~~g~~  127 (146)
                      ..+.+.|.+++++.|+|||++||+++++..+||++++|+  +|++++.++.
T Consensus       165 ~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        165 EQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999865558999999999999999999999998  5999988764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.5e-31  Score=205.88  Aligned_cols=129  Identities=32%  Similarity=0.525  Sum_probs=111.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.||+.++....+..  ...+++..+++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~  176 (279)
T PRK13635         98 TVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR  176 (279)
T ss_pred             cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            6889998764333221  1234578899999996 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus       177 ~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        177 REVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence            99999999998655899999999999987 59999999999999999877653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.98  E-value=2e-31  Score=197.53  Aligned_cols=125  Identities=31%  Similarity=0.454  Sum_probs=107.6

Q ss_pred             ChHHHhhcCcccc-C-CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++.... . ......++.++++.+++. +..++++.+|||||+||++||||++.+|+++||||||++||+.++
T Consensus        86 t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~  164 (213)
T TIGR01277        86 TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR  164 (213)
T ss_pred             cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            5788987653211 1 111234677899999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      ..+.+.|.++.++.|.|||++||+++++..+||++++|++|++++.|+
T Consensus       165 ~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999976558999999999999999999999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.98  E-value=9.8e-32  Score=222.02  Aligned_cols=129  Identities=33%  Similarity=0.470  Sum_probs=112.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+++|+.++....+.+  ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       126 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~  204 (520)
T TIGR03269       126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA  204 (520)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence            5788887754332221  1234678899999996 577899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ..+.+.|++++++.|+|||+||||++.+.++||+|++|++|+++..|+++++
T Consensus       205 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  256 (520)
T TIGR03269       205 KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV  256 (520)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence            9999999999766699999999999999999999999999999988887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.9e-31  Score=204.79  Aligned_cols=128  Identities=32%  Similarity=0.456  Sum_probs=110.3

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+..  ...+++.++++.+++. .+.++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~  172 (274)
T PRK13644         94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG  172 (274)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            5788888764332221  1234577889999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|+++++ .|.|||++||+++++ ..||++++|++|++++.|+++++.
T Consensus       173 ~~l~~~l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        173 IAVLERIKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999975 599999999999998 469999999999999999887753

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.8e-31  Score=200.20  Aligned_cols=124  Identities=27%  Similarity=0.428  Sum_probs=105.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+|+. +..++++.+||||||||++||||++.+|++|||||||+|||+.++
T Consensus       103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  181 (233)
T PRK11629        103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA  181 (233)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            6788987754322211  1234578899999996 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      ..+.+.|.+++++.|+|||++||+++++.. +|++++|++|++++.++
T Consensus       182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence            999999999975458999999999999887 57999999999988765

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.2e-31  Score=202.23  Aligned_cols=129  Identities=29%  Similarity=0.438  Sum_probs=111.0

Q ss_pred             ChHHHhhcCccc----cCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQL----RGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++...    .+.  .....++.++++.+++. ++.++++.+|||||+||++||||++.+|++|||||||+|||
T Consensus        92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD  170 (255)
T PRK11231         92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD  170 (255)
T ss_pred             cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            578888875311    111  11234577889999995 57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.++..+.+.|.++++ .|+|||++||+++++.++||++++|++|+++..|+++++.
T Consensus       171 ~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        171 INHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             HHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            9999999999999875 4899999999999999999999999999999998887764

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.2e-31  Score=203.44  Aligned_cols=130  Identities=29%  Similarity=0.372  Sum_probs=111.3

Q ss_pred             ChHHHhhcCcccc-----CC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR-----GK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....     .. .....++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||
T Consensus        97 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD  175 (265)
T PRK10253         97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD  175 (265)
T ss_pred             cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            5778887652111     01 11234577889999995 57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.++..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++.
T Consensus       176 ~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        176 ISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999997645899999999999999999999999999999999887764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.98  E-value=2.4e-31  Score=199.91  Aligned_cols=142  Identities=35%  Similarity=0.576  Sum_probs=117.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. .+.++++.+|||||+||++||||++.+|++++|||||+|||+.++
T Consensus        87 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~  165 (235)
T cd03299          87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK  165 (235)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence            5778887654322211  1234567889999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~  143 (146)
                      ..+.+.|++++.+.|+|+|++||+++++..+||++++|++|++++.|+++++... ..+....+.+
T Consensus       166 ~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  231 (235)
T cd03299         166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG  231 (235)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCcccHHHHHHhC
Confidence            9999999998765589999999999999999999999999999999988776432 2345555544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.9e-31  Score=200.66  Aligned_cols=141  Identities=37%  Similarity=0.562  Sum_probs=116.1

Q ss_pred             ChHHHhhcCccccCC----CccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |++||+.++....+.    ....+++..+++.+++..   ...++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus        94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L  173 (246)
T PRK14269         94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL  173 (246)
T ss_pred             cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            678999876433221    112335678899999842   3467888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      |+.++..+.+.|.++. + |+|+|++||+++++.++||++++|++|++++.|+++++.. +..++...|++
T Consensus       174 D~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  242 (246)
T PRK14269        174 DPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLS  242 (246)
T ss_pred             CHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHHHHHHhh
Confidence            9999999999999985 3 8999999999999999999999999999999999888753 33445555554

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.98  E-value=3.6e-31  Score=200.67  Aligned_cols=130  Identities=39%  Similarity=0.613  Sum_probs=110.4

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+..   ...+++.++++.+++..   ...++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       102 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD  181 (253)
T PRK14242        102 SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD  181 (253)
T ss_pred             cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            6789998764332211   12345777889988842   24578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|++++ + +.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus       182 ~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  237 (253)
T PRK14242        182 PIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT  237 (253)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            999999999999995 3 7899999999999999999999999999999999887643

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.6e-31  Score=201.19  Aligned_cols=140  Identities=37%  Similarity=0.517  Sum_probs=114.9

Q ss_pred             ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.||+.++......  .  ...+++.++++.+++..   +..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L  177 (250)
T PRK14247         98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL  177 (250)
T ss_pred             cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence            678999875432211  1  11345778899999842   3468889999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      |+.++..+.+.|.+++ + |.|+|++||+++++..+||++++|++|++++.|+++++... .+++.+.|.
T Consensus       178 D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  245 (250)
T PRK14247        178 DPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEKYV  245 (250)
T ss_pred             CHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCccHHHHHHh
Confidence            9999999999999985 3 79999999999999999999999999999999998876432 334545443

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.98  E-value=1.5e-31  Score=197.59  Aligned_cols=122  Identities=31%  Similarity=0.548  Sum_probs=105.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++..  ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~  164 (210)
T cd03269          86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV  164 (210)
T ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            6788887754332221  1234577889999996 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      ..+.+.|+++++ .|.|||++||+++++.++||++++|++|++++.
T Consensus       165 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         165 ELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             HHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence            999999999875 489999999999999999999999999999764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=9.7e-32  Score=191.25  Aligned_cols=122  Identities=36%  Similarity=0.515  Sum_probs=110.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |..||+.+++.+.+..  .....+.++++.+||. .....||++|||||+|||+||||++..|++|+.||||.+||..+.
T Consensus       104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg  182 (228)
T COG4181         104 TALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG  182 (228)
T ss_pred             hhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence            4579999998877632  3345688999999996 578889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      +++.+++..+.++.|.|.++||||+..+.+ |+|++-|+.|+++++
T Consensus       183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         183 DKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence            999999999999999999999999998877 999999999999753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.97  E-value=2.4e-31  Score=199.53  Aligned_cols=141  Identities=33%  Similarity=0.546  Sum_probs=116.9

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++...++..  ...+++..+++.+++. ++.++.+.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus        88 t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~  166 (232)
T cd03300          88 TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR  166 (232)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5678887654332211  1234577889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      ..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+.+++... .+++...|+
T Consensus       167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~  231 (232)
T cd03300         167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI  231 (232)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence            9999999999764589999999999999999999999999999999988776432 334555554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.97  E-value=1.8e-31  Score=199.74  Aligned_cols=128  Identities=30%  Similarity=0.479  Sum_probs=108.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcC-CChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ   79 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~   79 (146)
                      |+.+|+.++...+.. ...+.+.++++.++ +. ...++++.+|||||+||++|||||+.+|+++||||||+|||+.++.
T Consensus        91 tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~  168 (230)
T TIGR03410        91 TVEENLLTGLAALPR-RSRKIPDEIYELFPVLK-EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK  168 (230)
T ss_pred             cHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            577888765433221 11233566777776 43 4678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      .+.+.|.+++++.|+|+|++||+++++..+||++++|++|++++.|+++++
T Consensus       169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            999999998764589999999999999999999999999999999998876

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2e-31  Score=200.75  Aligned_cols=130  Identities=25%  Similarity=0.487  Sum_probs=111.7

Q ss_pred             ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++..... ..  .....+.++++.+++. ...++++.+|||||+||++||||++.+|++|||||||+|||+.+
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  172 (241)
T PRK10895         94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS  172 (241)
T ss_pred             cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            57888877543221 11  1234577889999995 56788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +..+.+.+.++++ .|.|+|++||+++++..+||++++|++|++++.|+++++..
T Consensus       173 ~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        173 VIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             HHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            9999999999875 58999999999999999999999999999999999887643

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=1.6e-31  Score=197.54  Aligned_cols=118  Identities=37%  Similarity=0.601  Sum_probs=101.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+..  ....++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus        92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  170 (211)
T cd03225          92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR  170 (211)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5778887653322211  1234577889999995 577899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ..+.+.|.+++++ |+|||++||+++++..+||++++|++|+
T Consensus       171 ~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         171 RELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            9999999999764 8999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.97  E-value=2.3e-31  Score=197.93  Aligned_cols=120  Identities=28%  Similarity=0.477  Sum_probs=102.1

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.++.......  ...+++.++++.++++ +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  177 (221)
T TIGR02211        99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA  177 (221)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence            5788887653222111  1234577889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      ..+.+.|.+++++.|.|||++||+++++.. +|++++|++|+++
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999976558999999999998865 7999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.3e-31  Score=203.71  Aligned_cols=129  Identities=32%  Similarity=0.488  Sum_probs=111.1

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+...  ..+++..+++.+++. .+.++++.+|||||+||++|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~  176 (277)
T PRK13642         98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR  176 (277)
T ss_pred             CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            67889987643222211  124567889999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.|.|||++||+++++. .||++++|++|++++.|+++++.
T Consensus       177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999997655999999999999986 59999999999999999987764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.97  E-value=2.1e-31  Score=200.67  Aligned_cols=129  Identities=23%  Similarity=0.350  Sum_probs=110.8

Q ss_pred             ChHHHhhcCcccc--------CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+.||+.++....        +.  .....++..+++.+++. +..++++.+|||||+|||+||||++.+|++|||||||
T Consensus        93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt  171 (242)
T TIGR03411        93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV  171 (242)
T ss_pred             CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            6788887753211        01  11234577889999996 5778899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +|||+.++..+.+.|+++++  +.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus       172 ~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       172 AGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             cCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            99999999999999999964  6899999999999999999999999999999998887753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.1e-31  Score=207.11  Aligned_cols=140  Identities=41%  Similarity=0.592  Sum_probs=114.7

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+++|+.|+....+...   ..+.+..+++.+++..   ...++++.+||||||||++||||++.+|++|||||||++||
T Consensus       178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD  257 (329)
T PRK14257        178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD  257 (329)
T ss_pred             cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence            68899998653322111   1223567788887632   24578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      +.+...+.+.|.++.+  ++|+|+|||+++++.++||||++|++|++++.|+++++. .+.++....|+
T Consensus       258 ~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~~~~~~~~  324 (329)
T PRK14257        258 PIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYI  324 (329)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence            9999999999999864  699999999999999999999999999999999999974 34444445554

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.5e-31  Score=199.47  Aligned_cols=141  Identities=38%  Similarity=0.602  Sum_probs=115.6

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |++||+.++....+...   ..+++.++++.+++.   ....++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD  179 (251)
T PRK14251        100 SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD  179 (251)
T ss_pred             cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCC
Confidence            67899977543222111   124567788888883   134678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +.++..+.+.|.++. + +.|||++||+++++.++||++++|++|+++..|+++++. .+.+.+.+.|++
T Consensus       180 ~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  247 (251)
T PRK14251        180 PISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITSDYLN  247 (251)
T ss_pred             HHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence            999999999999985 3 689999999999999999999999999999999988864 344556666654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.97  E-value=2.3e-31  Score=198.88  Aligned_cols=123  Identities=28%  Similarity=0.378  Sum_probs=105.9

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++...++..  ...+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~  178 (224)
T cd03220         100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ  178 (224)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            6788988764333221  1123567788899995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.+.|.+++++ |.|||++||+++++..+||++++|++|++++.|
T Consensus       179 ~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         179 EKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999764 899999999999999999999999999998654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.5e-31  Score=200.79  Aligned_cols=140  Identities=37%  Similarity=0.552  Sum_probs=114.1

Q ss_pred             ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.||+.++....+.  .  ....++..+++.+++..   ...++++.+||||||||++|||||+.+|+++||||||+||
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L  180 (253)
T PRK14267        101 TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI  180 (253)
T ss_pred             cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence            678888775432211  1  11235677888888742   3467889999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      |+.++..+.+.|+++++  ++|||++||+++++..+||++++|++|++++.|+++++.. +.+++...|+
T Consensus       181 D~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  248 (253)
T PRK14267        181 DPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYV  248 (253)
T ss_pred             CHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHh
Confidence            99999999999999863  6899999999999999999999999999999999888743 3334555554

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.8e-31  Score=198.97  Aligned_cols=140  Identities=36%  Similarity=0.565  Sum_probs=113.6

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+...   ..+++..+++.+++..   +..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  180 (252)
T PRK14239        101 SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD  180 (252)
T ss_pred             cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence            67899987643222111   1345667788888732   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++.+  +.|||++||+++++..+||++++|++|++++.|+++++.. +.......|+
T Consensus       181 ~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  247 (252)
T PRK14239        181 PISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYI  247 (252)
T ss_pred             HHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence            9999999999999853  6899999999999999999999999999999999888743 3344444443

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.7e-31  Score=199.47  Aligned_cols=140  Identities=40%  Similarity=0.627  Sum_probs=115.0

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+..   ....++.++++.+++.   ....++++.+||||||||++||||++.+|+++||||||+|||
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD  179 (251)
T PRK14270        100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD  179 (251)
T ss_pred             cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            6789998764332211   1134566788888873   134678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++.+  +.|+|++||+++++.++|||+++|++|++++.|+++++. .+.++....|+
T Consensus       180 ~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  246 (251)
T PRK14270        180 PISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYI  246 (251)
T ss_pred             HHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence            9999999999999864  589999999999999999999999999999999998874 33445555554

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.97  E-value=4.4e-31  Score=197.19  Aligned_cols=129  Identities=32%  Similarity=0.458  Sum_probs=109.9

Q ss_pred             ChHHHhhcCcccc----CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....    ...  ...+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus        67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD  145 (223)
T TIGR03771        67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD  145 (223)
T ss_pred             cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            4678887653211    011  1234577889999996 57788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|.++++ .|.|+|++||+++++.++||+++++ +|+++..|+++++..
T Consensus       146 ~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       146 MPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             HHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            9999999999999975 4999999999999999999999999 899999999887644

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.3e-31  Score=200.56  Aligned_cols=140  Identities=39%  Similarity=0.619  Sum_probs=114.5

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |++||+.++....+...   ..+++..+++.+++..   +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus       108 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD  187 (259)
T PRK14274        108 SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD  187 (259)
T ss_pred             CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            67899987643332111   1234667888888742   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++. + +.|+|++||+++.+.++||++++|++|++++.|+++++.. +.++....|+
T Consensus       188 ~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  254 (259)
T PRK14274        188 PVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTLDYI  254 (259)
T ss_pred             HHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCHHHHHhh
Confidence            999999999999985 3 7899999999999999999999999999999999988743 3344444444

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.2e-31  Score=219.30  Aligned_cols=130  Identities=22%  Similarity=0.356  Sum_probs=111.1

Q ss_pred             ChHHHhhcCcc--ccC---CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQ--LRG---KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~--~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.||+.++..  ...   ..  ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~L  436 (506)
T PRK13549        357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI  436 (506)
T ss_pred             CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence            57888876531  111   01  122457789999999523578999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |+.+++.+.++|.++++ +|.|||++|||++++.++|||+++|++|+++..|+++++.
T Consensus       437 D~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  493 (506)
T PRK13549        437 DVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT  493 (506)
T ss_pred             CHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence            99999999999999976 4999999999999999999999999999999999888763

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.2e-31  Score=200.81  Aligned_cols=129  Identities=29%  Similarity=0.393  Sum_probs=111.3

Q ss_pred             ChHHHhhcCccc----cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQL----RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~----~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||.+|+.++...    ....  ...+++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  169 (256)
T TIGR03873        91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD  169 (256)
T ss_pred             CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence            678998875311    1111  1234577889999995 57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.++..+.+.|.++++ .|.|||++||+++++.++||+|++|++|++++.|+++++.
T Consensus       170 ~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       170 VRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            9999999999999975 4899999999999999999999999999999999987764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.97  E-value=3.4e-31  Score=199.46  Aligned_cols=111  Identities=23%  Similarity=0.369  Sum_probs=100.1

Q ss_pred             HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +++.++++.+++.....++++. +||||||||++|||||+.+|+++||||||++||+.++..+.+.|.++++ .|.|||+
T Consensus       121 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~  199 (243)
T TIGR01978       121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLI  199 (243)
T ss_pred             HHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEE
Confidence            4577889999996445677776 5999999999999999999999999999999999999999999999975 5899999


Q ss_pred             EecCHHHHHhh-cCeEEEEECCEEEEeeCccccc
Q 046954           99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +||+++++..+ ||++++|++|++++.|+++++.
T Consensus       200 vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       200 ITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             EEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            99999999998 8999999999999999887553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.3e-31  Score=199.00  Aligned_cols=140  Identities=34%  Similarity=0.534  Sum_probs=114.6

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+. .  ...+++.++++.+++..   +..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD  180 (252)
T PRK14256        101 SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD  180 (252)
T ss_pred             cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            578888765432221 1  11345677888888742   24567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++++  +.|||++||+++++.++||++++|++|++++.|+++++. .+.++....|+
T Consensus       181 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  247 (252)
T PRK14256        181 PISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYI  247 (252)
T ss_pred             HHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence            9999999999999964  689999999999999999999999999999999988864 33445555555

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=2.3e-31  Score=197.00  Aligned_cols=119  Identities=33%  Similarity=0.487  Sum_probs=102.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  172 (214)
T cd03292          94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT  172 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence            5788887764332211  1234577889999995 577889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ..+.+.|+++++ .|.|+|++||+++++..+||++++|++|++
T Consensus       173 ~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         173 WEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999865 489999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=5.1e-31  Score=196.41  Aligned_cols=121  Identities=30%  Similarity=0.396  Sum_probs=104.1

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+...  ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  173 (222)
T PRK10908         95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS  173 (222)
T ss_pred             cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence            57888877543322211  123567889999996 567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE  123 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~  123 (146)
                      ..+.+.|.++++ .|.|+|++||+++++..+||++++|++|+++.
T Consensus       174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        174 EGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999999975 48999999999999999999999999999864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.7e-31  Score=200.19  Aligned_cols=140  Identities=36%  Similarity=0.532  Sum_probs=114.3

Q ss_pred             ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+++|+.++.... ...  ...+++.++++.+++.   ....++++.+|||||+||++|||||+.+|++|||||||+|||
T Consensus       109 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD  188 (260)
T PRK10744        109 SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD  188 (260)
T ss_pred             cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCC
Confidence            6788988764322 111  1134577889999873   135678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|++++ + +.|||++||+++.+..+||++++|++|++++.|+++++.. +.++....|+
T Consensus       189 ~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  255 (260)
T PRK10744        189 PISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYI  255 (260)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence            999999999999995 3 7899999999999999999999999999999999888743 3344444443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3e-31  Score=218.56  Aligned_cols=129  Identities=27%  Similarity=0.479  Sum_probs=112.4

Q ss_pred             ChHHHhhcCcccc--C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLR--G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~--~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      |++||+.++...+  + ..  ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~  176 (506)
T PRK13549         98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE  176 (506)
T ss_pred             cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence            6889998865322  1 11  1134578899999996 567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      .++..+.+.|.++++ .|.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       177 ~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        177 SETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             HHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence            999999999999975 5999999999999999999999999999999999887763

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.9e-31  Score=200.03  Aligned_cols=140  Identities=34%  Similarity=0.551  Sum_probs=113.4

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+++|+.++.......   ...+.+..+++.+++..   +..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus       117 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD  196 (268)
T PRK14248        117 SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD  196 (268)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccC
Confidence            5788887754322211   11234667788888741   35678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++++  +.|||++||+++++.++||++++|++|++++.|+++++.. +.++....|+
T Consensus       197 ~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  263 (268)
T PRK14248        197 PISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYI  263 (268)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHHH
Confidence            9999999999999853  6899999999999999999999999999999999887643 3344444454

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.97  E-value=5.8e-31  Score=196.71  Aligned_cols=121  Identities=36%  Similarity=0.554  Sum_probs=103.3

Q ss_pred             ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++......  ....+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus       104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~  182 (228)
T PRK10584        104 NALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG  182 (228)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            578888765322221  11235678899999996 577889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE  123 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~  123 (146)
                      ..+.+.|++++++.|.|||++||+++++. .||++++|++|++++
T Consensus       183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~  226 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence            99999999997655899999999999885 599999999999875

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=2.5e-31  Score=196.85  Aligned_cols=118  Identities=36%  Similarity=0.545  Sum_probs=101.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+..  ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  173 (214)
T TIGR02673        95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS  173 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence            5778887754322211  1234677899999996 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ..+.+.|+++++ .|+|||++||+++++..+||++++|++|+
T Consensus       174 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       174 ERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999875 48999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.6e-31  Score=198.80  Aligned_cols=140  Identities=37%  Similarity=0.599  Sum_probs=113.5

Q ss_pred             ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.+|+.++.......    ...+.+.++++.+++..   ...++++.+||||||||++|||||+.+|++|||||||+||
T Consensus       101 tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~L  180 (251)
T PRK14244        101 SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL  180 (251)
T ss_pred             CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            5788887753222211    12234677889999852   2356788999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      |+.++..+.+.|.++. + |+|||++||+++++.++||++++|++|++++.|+++++.. +.++....|.
T Consensus       181 D~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  248 (251)
T PRK14244        181 DPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKRYI  248 (251)
T ss_pred             CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCChHHHHhc
Confidence            9999999999999985 3 8999999999999999999999999999999999888753 3344444443

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=200.45  Aligned_cols=140  Identities=34%  Similarity=0.581  Sum_probs=114.4

Q ss_pred             ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.||+.++...++.  .  ...+++.++++.+++..   ...++++.+||||||||++|||||+.+|++|||||||+||
T Consensus       115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L  194 (267)
T PRK14235        115 SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL  194 (267)
T ss_pred             cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence            678999876432221  1  11345678899999852   2457789999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      |+.++..+.+.|+++++  +.|||++||+++.+..+||++++|++|++++.|+++++.. +.++....|+
T Consensus       195 D~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  262 (267)
T PRK14235        195 DPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDPRTQDYI  262 (267)
T ss_pred             CHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHh
Confidence            99999999999999863  6899999999999999999999999999999999887643 3344444443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.8e-31  Score=217.75  Aligned_cols=130  Identities=24%  Similarity=0.412  Sum_probs=111.0

Q ss_pred             ChHHHhhcCcccc----C---CC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954            1 TVADNIRYGPQLR----G---KK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA   72 (146)
Q Consensus         1 tv~eni~~~~~~~----~---~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~   72 (146)
                      |+.||+.++....    +   .. ...+.+.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence            5778887653211    0   11 11245778999999943467899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ||+.+++.+.++|.++++ .|.|||++|||++++.++||++++|++|++++.|+++++.
T Consensus       427 LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             CCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence            999999999999999975 5999999999999999999999999999999999887653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.97  E-value=7.4e-31  Score=198.84  Aligned_cols=130  Identities=26%  Similarity=0.381  Sum_probs=111.0

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCC
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN-------EPEVLLLDEPTSA   72 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~-------~p~llllDEPt~~   72 (146)
                      |+.+|+.++....... ...+++.++++.+++. +..++++.+||||||||++|||||+.       +|+++||||||+|
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~  163 (248)
T PRK03695         85 PVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS  163 (248)
T ss_pred             cHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence            5788888753221111 1234678899999995 56789999999999999999999998       6799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ||+.++..+.+.|+++++ .|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus       164 LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        164 LDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence            999999999999999975 48999999999999999999999999999999998877643

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=217.66  Aligned_cols=128  Identities=34%  Similarity=0.460  Sum_probs=111.4

Q ss_pred             ChHHHhhcCcccc---C-CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR---G-KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~---~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+||+.++...+   + ...  ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus        95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD  173 (501)
T PRK10762         95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT  173 (501)
T ss_pred             cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCC
Confidence            6889998864321   1 111  134577889999996 46789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.++..+.+.|.++++ .|.|||++|||++++..+||+|++|++|+++..|+++++
T Consensus       174 ~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        174 DTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             HHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            9999999999999975 489999999999999999999999999999999988765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=3.5e-31  Score=218.69  Aligned_cols=130  Identities=31%  Similarity=0.525  Sum_probs=110.3

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh----hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS----SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.+|+.++....... ...+++.++++.+++..    ++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus       381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~  460 (520)
T TIGR03269       381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP  460 (520)
T ss_pred             cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            5778887642211111 12345778899999953    257899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      .+++.+.+.|++++++.|.|||++|||++++.++||++++|++|++++.|+++++
T Consensus       461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  515 (520)
T TIGR03269       461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI  515 (520)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999765689999999999999999999999999999998887665

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=200.08  Aligned_cols=140  Identities=36%  Similarity=0.572  Sum_probs=113.9

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.||+.++....+.. ...+++.++++.+++.   .+..++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus       109 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~  188 (269)
T PRK14259        109 SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI  188 (269)
T ss_pred             hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence            6789998765432221 1234566778888763   23568889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-----------CEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----------GEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-----------G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.++|.+++ + +.|||++||+++++..+||++++|++           |++++.|+++++.. +.+++...++
T Consensus       189 ~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~  264 (269)
T PRK14259        189 STLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYI  264 (269)
T ss_pred             HHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCcCChHHHHHH
Confidence            9999999999985 3 78999999999999999999999996           67899999988743 3445555554

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.5e-30  Score=195.82  Aligned_cols=142  Identities=37%  Similarity=0.563  Sum_probs=118.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++..  ...+.+.++++.+++. .+.++.+.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus        88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~  166 (237)
T TIGR00968        88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR  166 (237)
T ss_pred             cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5788887654332221  1234577889999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+.+++.. +..++...|++
T Consensus       167 ~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~  232 (237)
T TIGR00968       167 KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLG  232 (237)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence            999999999876448999999999999999999999999999999999888753 33455555554

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.7e-31  Score=201.74  Aligned_cols=129  Identities=30%  Similarity=0.519  Sum_probs=109.9

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++........  ....+.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~  178 (271)
T PRK13632        100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK  178 (271)
T ss_pred             cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            67899987643222111  223577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|.+++++.+.|||++||+++.+. +||++++|++|+++..|+++++.
T Consensus       179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence            99999999997643599999999999985 79999999999999998877653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=7.1e-31  Score=197.56  Aligned_cols=124  Identities=29%  Similarity=0.457  Sum_probs=105.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+....++..  ...+++..+++.+++. +..++++.+||||||||++||+||+.+|+++||||||+|||+.++
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  189 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ  189 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence            5778887654332221  1133567788999995 567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.+.+.|.+++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus       190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999997655899999999999999999999999999997654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=3.6e-31  Score=219.06  Aligned_cols=113  Identities=29%  Similarity=0.466  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           19 ENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .+++.++++.+++..  ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++.|+||
T Consensus       131 ~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv  210 (529)
T PRK15134        131 RGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL  210 (529)
T ss_pred             HHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeE
Confidence            356788999999963  246889999999999999999999999999999999999999999999999999976558999


Q ss_pred             EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |+||||++++..+||||++|++|++++.|+++++.
T Consensus       211 i~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~  245 (529)
T PRK15134        211 LFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF  245 (529)
T ss_pred             EEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999887764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=201.38  Aligned_cols=140  Identities=43%  Similarity=0.604  Sum_probs=114.3

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+..   ...+.+.++++.+++.   .+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       135 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD  214 (286)
T PRK14275        135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD  214 (286)
T ss_pred             CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            6789998764322211   1124466778888873   235678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++++  +.|||++||+++++..+||++++|++|+++..|+++++.. +.+++.+.|+
T Consensus       215 ~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~~~~~~~~  281 (286)
T PRK14275        215 PKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTEDYI  281 (286)
T ss_pred             HHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence            9999999999999863  6899999999999999999999999999999999887743 3344555544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=6.6e-31  Score=216.77  Aligned_cols=127  Identities=28%  Similarity=0.446  Sum_probs=111.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.||+.++...  .....+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       102 tv~e~l~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~  178 (510)
T PRK15439        102 SVKENILFGLPK--RQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER  178 (510)
T ss_pred             cHHHHhhccccc--chHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence            578888776421  112245678899999996 56789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+.|+++++ .|+|||++|||++++..+||+|++|++|++++.|+++++.
T Consensus       179 l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        179 LFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             HHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence            9999999975 4999999999999999999999999999999999887663

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1e-30  Score=198.93  Aligned_cols=140  Identities=38%  Similarity=0.560  Sum_probs=113.1

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+. .  ...+.+.++++.+++.   .+..++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus       101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  180 (258)
T PRK14241        101 SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD  180 (258)
T ss_pred             cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            678888775432221 1  1134567788888873   135678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.+++ + ++|||++||+++++.++||++++|+      +|++++.|+++++.. +.+.....|+
T Consensus       181 ~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~  253 (258)
T PRK14241        181 PISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPTQKATEDYI  253 (258)
T ss_pred             HHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhCcCcHHHHHHH
Confidence            999999999999995 3 6899999999999999999999997      799999999887643 2334444443

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=196.85  Aligned_cols=141  Identities=37%  Similarity=0.583  Sum_probs=114.6

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+...   ..+.+..+++.+++..   ++.++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD  179 (251)
T PRK14249        100 SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD  179 (251)
T ss_pred             cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            67899987643322211   1234566777777641   35678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +.++..+.++|.++. + +.|||++||+++++..+||++++|++|++++.|+++++.. +..+....|+.
T Consensus       180 ~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~  247 (251)
T PRK14249        180 PVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYIT  247 (251)
T ss_pred             HHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCCChHHHHHHh
Confidence            999999999999984 3 8999999999999999999999999999999999888743 34444555554

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.3e-31  Score=200.34  Aligned_cols=130  Identities=30%  Similarity=0.419  Sum_probs=110.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++.......  ...+++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus       100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~  178 (269)
T PRK13648        100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR  178 (269)
T ss_pred             cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            4567777654322211  1234567889999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+.+.|.+++++.|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus       179 ~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        179 QNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence            999999999876558999999999999975 99999999999999999877643

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2e-30  Score=197.76  Aligned_cols=132  Identities=34%  Similarity=0.550  Sum_probs=110.9

Q ss_pred             ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+. ..  ..+.+.++++.+++..   +..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus       103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD  182 (261)
T PRK14258        103 SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD  182 (261)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            578888765322221 11  1234677888888732   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-----CEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----GEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-----G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|.+++++.|.|||++||+++++.++||+|++|++     |++++.|+++++..
T Consensus       183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN  245 (261)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence            99999999999998754589999999999999999999999999     99999999988754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=195.67  Aligned_cols=140  Identities=39%  Similarity=0.586  Sum_probs=112.9

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+..   ...+++.++++.+++..   +..++++.+|||||+|||+|||||+.+|+++||||||+|||
T Consensus        98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD  177 (249)
T PRK14253         98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD  177 (249)
T ss_pred             cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence            5788887754322211   11234566788887742   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++++  +.|||++||+++++..+||++++|++|++++.|+++++.. +.++....|+
T Consensus       178 ~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  244 (249)
T PRK14253        178 PIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV  244 (249)
T ss_pred             HHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCChHHHHHh
Confidence            9999999999999964  5899999999999999999999999999999999887643 3344444444

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=200.23  Aligned_cols=131  Identities=27%  Similarity=0.409  Sum_probs=111.6

Q ss_pred             ChHHHhhcCcccc----CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh---------cCCCEEE
Q 046954            1 TVADNIRYGPQLR----GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA---------NEPEVLL   65 (146)
Q Consensus         1 tv~eni~~~~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~---------~~p~lll   65 (146)
                      |+.||+.++....    +.  ....+.+..+++.+++. ++.++++.+|||||+|||+|||||+         .+|++||
T Consensus        99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll  177 (272)
T PRK13547         99 SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL  177 (272)
T ss_pred             cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE
Confidence            6789987753211    10  11234577889999995 5778999999999999999999999         5999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |||||+|||+.++..+.+.|.++.++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus       178 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT  244 (272)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence            9999999999999999999999976558999999999999999999999999999999998877643

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=194.33  Aligned_cols=131  Identities=30%  Similarity=0.400  Sum_probs=119.4

Q ss_pred             ChHHHhhcCccccC--C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRG--K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||+|-+.||...|.  .  ..+...+.++++.++|. ++.+++..+||||||||+.||+.++++.++++||||.++||..
T Consensus        91 TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmk  169 (252)
T COG4604          91 TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK  169 (252)
T ss_pred             EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchH
Confidence            68899999864442  2  23345688999999995 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ....+++.|++++++.|+||++|-||++++..|+|.|+-|++|+++..|+++++..
T Consensus       170 Hsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=196.47  Aligned_cols=140  Identities=45%  Similarity=0.613  Sum_probs=113.4

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+..   ...+++.++++.+++..   +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus        99 t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD  178 (250)
T PRK14240         99 SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD  178 (250)
T ss_pred             cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            5788998764332211   12345677788887631   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|+++. + +.|||++||+++.+..+||++++|++|+++..|+++++.. +.++....|+
T Consensus       179 ~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  245 (250)
T PRK14240        179 PISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTEDYI  245 (250)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHhh
Confidence            999999999999985 3 7899999999999999999999999999999999887643 3344444443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.4e-31  Score=216.35  Aligned_cols=129  Identities=28%  Similarity=0.373  Sum_probs=111.5

Q ss_pred             ChHHHhhcCccc----cCC---C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954            1 TVADNIRYGPQL----RGK---K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS   71 (146)
Q Consensus         1 tv~eni~~~~~~----~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~   71 (146)
                      ||.||+.++...    ++.   .  ...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~  174 (510)
T PRK09700         96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS  174 (510)
T ss_pred             cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            578898875421    111   1  1134577889999996 56789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |||+.++..+.+.|+++++ .|+|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       175 ~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (510)
T PRK09700        175 SLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS  233 (510)
T ss_pred             CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence            9999999999999999975 4999999999999999999999999999999999887753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.97  E-value=9e-31  Score=193.66  Aligned_cols=119  Identities=40%  Similarity=0.587  Sum_probs=102.2

Q ss_pred             ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.||+.++.. .++..  ...+++.++++.+++. +..++++.+|||||+||++|||||+.+|+++||||||+|||+.+
T Consensus        92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  170 (213)
T cd03262          92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL  170 (213)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            57788877532 11111  1234577889999995 57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +..+.+.|.++++ .|.|||++||+++++.++||++++|++|++
T Consensus       171 ~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         171 VGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999975 489999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=2.3e-31  Score=198.16  Aligned_cols=130  Identities=28%  Similarity=0.492  Sum_probs=117.9

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||.|.+.|.+.+.+.+.  .+.++..||+++++. .+..+++.+||.|++|++.+..+++++|+++|||||||||||.+.
T Consensus        88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~  166 (300)
T COG4152          88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV  166 (300)
T ss_pred             cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhH
Confidence            67888888888777653  345688999999996 567888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+.+.+.++++ .|.|||++||.|+.++++||++++|++|+.|..|+.+++..
T Consensus       167 elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         167 ELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             HHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence            999999999975 59999999999999999999999999999999999887643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=197.00  Aligned_cols=140  Identities=36%  Similarity=0.582  Sum_probs=112.7

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.+|+.++....+.. ...+++..+++.+++..   ...++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus       106 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~  185 (264)
T PRK14243        106 SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI  185 (264)
T ss_pred             cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence            5788888764322211 12344566777777631   2467789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE---------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|.++++  +.|||++||+++++.++||++++|+         +|++++.|+++++.. +.+.....++
T Consensus       186 ~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~  259 (264)
T PRK14243        186 STLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV  259 (264)
T ss_pred             HHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence            99999999999964  5899999999999999999999998         899999999988743 3344444443

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=195.64  Aligned_cols=140  Identities=37%  Similarity=0.602  Sum_probs=114.9

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+||+.++....+..   ..+..+.++++.+++..   ...++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus       102 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD  181 (253)
T PRK14261        102 SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD  181 (253)
T ss_pred             cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            6889998765433211   11234667788887732   24678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++++  +.|||++||+++++.++||++++|++|+++..|+++++.. +.+++.+.|+
T Consensus       182 ~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  248 (253)
T PRK14261        182 PIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENYI  248 (253)
T ss_pred             HHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCcHHHHHHh
Confidence            9999999999999864  6899999999999999999999999999999999888753 3345666555

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=214.07  Aligned_cols=130  Identities=25%  Similarity=0.422  Sum_probs=110.7

Q ss_pred             ChHHHhhcCccc-c----C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954            1 TVADNIRYGPQL-R----G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA   72 (146)
Q Consensus         1 tv~eni~~~~~~-~----~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~   72 (146)
                      |+.+|+.++... .    + ..  ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus       346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~  425 (501)
T PRK10762        346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG  425 (501)
T ss_pred             cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            578888764311 0    1 11  11345778999999942467899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ||+.++..+.+.|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus       426 LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        426 VDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             CCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence            999999999999999975 4999999999999999999999999999999999887763

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=1.4e-30  Score=213.74  Aligned_cols=111  Identities=23%  Similarity=0.418  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.++++.+++. ++.++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+.+.|.++++ .|.|||+
T Consensus       113 ~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii  190 (490)
T PRK10938        113 PARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVL  190 (490)
T ss_pred             HHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEE
Confidence            34577889999995 578999999999999999999999999999999999999999999999999999976 4999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +||+++.+.++||++++|++|+++..|+++++.
T Consensus       191 ~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        191 VLNRFDEIPDFVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             EeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999998877653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.3e-30  Score=194.51  Aligned_cols=140  Identities=44%  Similarity=0.647  Sum_probs=113.8

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+++|+.++....+..   ...+.+..+++.+++..   ...++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus        99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD  178 (250)
T PRK14262         99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD  178 (250)
T ss_pred             cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence            5788888754322211   12234667888888742   24678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      +.++..+.+.|.+++ + ++|+|++||+++.+..+||++++|++|+++..|+++++... .+.+...|+
T Consensus       179 ~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  245 (250)
T PRK14262        179 PIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEYL  245 (250)
T ss_pred             HHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCChHHHHHh
Confidence            999999999999986 3 78999999999999999999999999999999998877532 234555544

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=213.58  Aligned_cols=128  Identities=25%  Similarity=0.397  Sum_probs=110.5

Q ss_pred             ChHHHhhcCccc-cCC--C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQL-RGK--K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~-~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.+|+.++... .+.  .  ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~  167 (491)
T PRK10982         89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE  167 (491)
T ss_pred             CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence            678998876421 111  1  1124577889999996 467889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      .++..+.+.|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++
T Consensus       168 ~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        168 KEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            999999999999975 599999999999999999999999999999999988765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.1e-30  Score=194.29  Aligned_cols=130  Identities=38%  Similarity=0.609  Sum_probs=107.8

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+...   ..+++.+.++.+++.   .+..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus       101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD  180 (252)
T PRK14255        101 SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD  180 (252)
T ss_pred             cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            57888877543222111   123456677777763   135678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|.++.+  +.|+|++||+++++.++||+|++|++|+++..|++.++..
T Consensus       181 ~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14255        181 PISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL  236 (252)
T ss_pred             HHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999964  5899999999999999999999999999999998877653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.97  E-value=2.3e-30  Score=212.06  Aligned_cols=130  Identities=23%  Similarity=0.338  Sum_probs=111.4

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.+.....+...  ..+.+..+++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus       101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr  179 (549)
T PRK13545        101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT  179 (549)
T ss_pred             cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            67899877543222211  123466788999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+.+.|.++++ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       180 ~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        180 KKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999864 58999999999999999999999999999999998877643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=214.07  Aligned_cols=126  Identities=25%  Similarity=0.423  Sum_probs=107.5

Q ss_pred             ChHHHhhcCcccc--------CC-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLR--------GK-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~--------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||.+|+.++...+        +. .  ....++.++++.+++..+..++++++|||||||||+|||||+.+|++||||||
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP  436 (510)
T PRK09700        357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP  436 (510)
T ss_pred             cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence            5788887753211        10 1  11234678899999952467899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP  127 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~  127 (146)
                      |+|||+.++..+.+.|+++++ .|.|||++|||++++..+||++++|++|+++..++.
T Consensus       437 t~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        437 TRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            999999999999999999975 599999999999999999999999999999988766

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.97  E-value=2.7e-30  Score=197.58  Aligned_cols=130  Identities=21%  Similarity=0.326  Sum_probs=110.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.++....+...  ....+..+++.+++. ++.++++.+|||||+||++||||++.+|++|||||||+|||+.++
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~  179 (264)
T PRK13546        101 TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA  179 (264)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence            57788876533222211  123355678888885 578889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+.+.|.++++ .|.|+|++||+++++..+||++++|++|+++..|+++++..
T Consensus       180 ~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        180 QKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence            999999999864 59999999999999999999999999999999999877644

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=195.15  Aligned_cols=140  Identities=38%  Similarity=0.518  Sum_probs=110.7

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+...   ..+.+..+++.+++.   .+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus       101 t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD  180 (252)
T PRK14272        101 SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD  180 (252)
T ss_pred             CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            57888876532222111   123345556666652   134678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|++++ + ++|+|++||+++++..+||++++|++|++++.|+++++.. +..+....|+
T Consensus       181 ~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~  247 (252)
T PRK14272        181 PASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEAYV  247 (252)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence            999999999999985 3 7999999999999999999999999999999999888643 3344545554

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-30  Score=213.65  Aligned_cols=129  Identities=28%  Similarity=0.489  Sum_probs=109.1

Q ss_pred             ChHHHhhcCcccc--C--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR--G--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....  .  ..  ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD  173 (500)
T TIGR02633        94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT  173 (500)
T ss_pred             cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence            6788988764321  1  11  1134577889999996322367799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.++..+.+.|+++++ .|.|||+||||++++..+||+|++|++|+++..++++++
T Consensus       174 ~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       174 EKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             HHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            9999999999999975 599999999999999999999999999999998887654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.9e-30  Score=196.23  Aligned_cols=130  Identities=42%  Similarity=0.603  Sum_probs=109.7

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+..   ...+++.++++.+++..   ...++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus       121 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD  200 (272)
T PRK14236        121 SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD  200 (272)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence            6788997754322211   11244677888888842   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|.++++  +.|+|++||+++++.++||++++|++|+++..|+++++..
T Consensus       201 ~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  256 (272)
T PRK14236        201 PISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT  256 (272)
T ss_pred             HHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence            9999999999999963  6899999999999999999999999999999999887643

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.4e-30  Score=197.78  Aligned_cols=140  Identities=36%  Similarity=0.605  Sum_probs=112.7

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.||+.++....+.. ...+++.++++.+++..   ...++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       135 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~  214 (285)
T PRK14254        135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV  214 (285)
T ss_pred             CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence            5788887654322211 12345778889988741   3568889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE-EEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC-LLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|+++++  +.|||++||+++++..+|||++ +|++|++++.|+++++.. ..+.....|+
T Consensus       215 ~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  280 (285)
T PRK14254        215 ATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI  280 (285)
T ss_pred             HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence            99999999999974  4799999999999999999975 679999999998887643 3334444444

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=2.4e-30  Score=213.49  Aligned_cols=111  Identities=21%  Similarity=0.415  Sum_probs=102.5

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +.+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++
T Consensus       381 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIiv  459 (510)
T PRK15439        381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFI  459 (510)
T ss_pred             HHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEE
Confidence            35778899999952357899999999999999999999999999999999999999999999999999976 49999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |||++++.++||++++|++|+++..|+++++.
T Consensus       460 sHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        460 SSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             CCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            99999999999999999999999999887764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=195.32  Aligned_cols=140  Identities=32%  Similarity=0.500  Sum_probs=113.6

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+. .  ...+.+.++++.+++.   .+..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus       103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD  182 (259)
T PRK14260        103 SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD  182 (259)
T ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            678898775432221 1  1123466788888873   135678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-----CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-----NGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-----~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++++  ++|||++||+++++..+||++++|+     +|++++.|+++++.. +..+....|+
T Consensus       183 ~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (259)
T PRK14260        183 PIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYV  254 (259)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcCCCChHHHHhh
Confidence            9999999999999863  6899999999999999999999998     599999999988743 3344444544

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=196.03  Aligned_cols=140  Identities=37%  Similarity=0.566  Sum_probs=111.3

Q ss_pred             ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++........   ....+.++++.+++.   .+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus       120 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD  199 (271)
T PRK14238        120 SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD  199 (271)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence            57889887543222111   122345566666431   235678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++.+  +.|||++||+++++.++||++++|++|+++..|+++++.. +.++....|+
T Consensus       200 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  266 (271)
T PRK14238        200 PISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTEDYI  266 (271)
T ss_pred             HHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCCHHHHHHH
Confidence            9999999999999863  7999999999999999999999999999999999888743 3344445454

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.5e-30  Score=195.53  Aligned_cols=139  Identities=33%  Similarity=0.508  Sum_probs=113.5

Q ss_pred             ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+. .  ....++.++++.+++..   ...++++.+|||||+||++||||++.+|+++||||||+|||
T Consensus       116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD  195 (267)
T PRK14237        116 SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD  195 (267)
T ss_pred             cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            678999876432221 1  12345677888888742   35678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF  141 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~  141 (146)
                      +.++..+.++|.++. + +.|||++||+++++.++||++++|++|++++.|+++++.. +.......+
T Consensus       196 ~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  261 (267)
T PRK14237        196 PISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDY  261 (267)
T ss_pred             HHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHh
Confidence            999999999999985 3 7899999999999999999999999999999999988743 333333434

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.5e-30  Score=196.29  Aligned_cols=140  Identities=35%  Similarity=0.565  Sum_probs=112.2

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.+|+.++....+.. ...+.+..+++.+++.   .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       116 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~  195 (274)
T PRK14265        116 SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPI  195 (274)
T ss_pred             cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence            5778887754322111 1223456677777763   13567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE---------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|.+++ + +.|||++||+++++.++||++++|+         +|++++.|+++++.. +.+.....|+
T Consensus       196 ~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  269 (274)
T PRK14265        196 STRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYI  269 (274)
T ss_pred             HHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCCHHHHHHh
Confidence            9999999999996 3 6899999999999999999999998         899999999988753 3444444444

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.5e-30  Score=188.51  Aligned_cols=127  Identities=35%  Similarity=0.553  Sum_probs=113.9

Q ss_pred             ChHHHhhcCccccCCCcc--HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKLT--ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|++|++...+....  .+.+...+..+||. +..++++.+|||||||||.|||||+.+|++|+||||+++||.-++
T Consensus        90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tR  168 (259)
T COG4525          90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR  168 (259)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHH
Confidence            578999999988775432  34577889999996 577899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEeeCcc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPD  128 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~  128 (146)
                      +++.+++.++.++.|+.+++|||+++++.-+++|+++|+.  |+|++.-+++
T Consensus       169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            9999999999888899999999999999999999999984  6898876664

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.97  E-value=3.1e-30  Score=192.79  Aligned_cols=126  Identities=31%  Similarity=0.410  Sum_probs=104.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.+....+......+++.++++.+++.....++++.+|||||+|||+|||||+.+|+++||||||+|||+.++..
T Consensus        96 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (225)
T PRK10247         96 TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN  175 (225)
T ss_pred             cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            57888877543322222234577899999995346789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEEeeCc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVEVLKP  127 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~~g~~  127 (146)
                      +.+.|.++.++.|.|||++||+++++. .||++++|+ ++..+++|+.
T Consensus       176 l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        176 VNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             HHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence            999999997656899999999999985 699999995 4555566553

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.97  E-value=3.5e-30  Score=215.32  Aligned_cols=127  Identities=33%  Similarity=0.443  Sum_probs=105.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++.    ...+++++.++++..++.+          ......+..||||||||++||||++++|++|||||||
T Consensus       438 TI~eNI~~g~----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T  513 (588)
T PRK11174        438 TLRDNVLLGN----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT  513 (588)
T ss_pred             CHHHHhhcCC----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            7899999873    1234566777777666532          1223345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+.+.+.+.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus       514 SaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~~  574 (588)
T PRK11174        514 ASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAG  574 (588)
T ss_pred             cCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhcc
Confidence            9999999999999999885  38999999999988765 9999999999999999999886543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=193.86  Aligned_cols=140  Identities=37%  Similarity=0.575  Sum_probs=113.6

Q ss_pred             ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCChh---hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDSS---FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      |+.||+.++....... ...+++.++++.+++...   ..++++.+|||||+||++|||||+.+|++|||||||+|||+.
T Consensus       104 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~  183 (261)
T PRK14263        104 SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPI  183 (261)
T ss_pred             cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence            6788998764332211 123467788999888421   345678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--------NGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--------~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|++++ + +.|+|++||+++++.++|||+++|+        +|++++.|+++++.. +.+++...|+
T Consensus       184 ~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~  256 (261)
T PRK14263        184 ATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYI  256 (261)
T ss_pred             HHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence            9999999999985 3 7899999999999999999999996        899999999988753 2334444443

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.9e-30  Score=195.76  Aligned_cols=140  Identities=36%  Similarity=0.498  Sum_probs=112.6

Q ss_pred             ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+++|+.++...... ..  ....+.++++.+++..   +..++.+.+|||||+||++|||||+.+|+++||||||+|||
T Consensus       116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD  195 (276)
T PRK14271        116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD  195 (276)
T ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            578888875422211 11  1223566788888852   23577889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.+++.+.+.|.++++  +.|||++||+++++.++|||+++|++|++++.|+++++.. +.++....|+
T Consensus       196 ~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  262 (276)
T PRK14271        196 PTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYV  262 (276)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence            9999999999999864  5899999999999999999999999999999999988753 3344444443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.3e-30  Score=211.34  Aligned_cols=129  Identities=22%  Similarity=0.297  Sum_probs=108.7

Q ss_pred             ChHHHhhcCcc--cc---CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQ--LR---GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~--~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.+|+.++..  ..   ...  ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus       355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L  434 (500)
T TIGR02633       355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV  434 (500)
T ss_pred             CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence            57788877531  11   111  113457789999999533568899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |+.++..+.+.|.++++ +|.|||++|||++++.++||++++|++|+++..++.+++
T Consensus       435 D~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       435 DVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             CHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            99999999999999976 499999999999999999999999999999988766544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.97  E-value=6.4e-30  Score=191.02  Aligned_cols=123  Identities=32%  Similarity=0.414  Sum_probs=103.0

Q ss_pred             ChHHHhhcCccccCC---Cc--cHHHHHH-HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK---KL--TENEVYK-LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~~--~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++......   ..  ....+.. .++.+++. ++.++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus        97 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD  175 (226)
T cd03234          97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD  175 (226)
T ss_pred             cHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence            678999875432211   11  1123444 78888885 56788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCEEEEee
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +.++..+.+.+.++++ .|.|+|++||++ +++.++||++++|++|++++.|
T Consensus       176 ~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         176 SFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999875 489999999998 6899999999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.4e-30  Score=208.61  Aligned_cols=129  Identities=37%  Similarity=0.497  Sum_probs=110.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK----------TGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ..+++++.++++..++.+ +.+.          .+..|||||+|||++||||+++++++|+||||
T Consensus       410 TireNi~l~~~----~~s~e~i~~al~~a~l~~-~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT  484 (559)
T COG4988         410 TIRENILLARP----DASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT  484 (559)
T ss_pred             cHHHHhhccCC----cCCHHHHHHHHHHhcHHH-hhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence            68999988732    245677888888887742 3332          34569999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      ++||.++.+.+.+.|.++++  ++|+|++||++..+.. +|+|++|++|++++.|+++++......+
T Consensus       485 A~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y  548 (559)
T COG4988         485 AHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLY  548 (559)
T ss_pred             cCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHH
Confidence            99999999999999999975  6999999999998876 8999999999999999999986654433

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=192.05  Aligned_cols=140  Identities=37%  Similarity=0.604  Sum_probs=113.7

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.||+.++....+..   ..++++..+++.+++.   .+..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus       114 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD  193 (265)
T PRK14252        114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD  193 (265)
T ss_pred             hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence            5788887764322211   1134566777877763   135678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      +.++..+.+.|.++++  +.|||++||+++++.++||++++|++|++++.|+.+++. .+.+++.+.|+
T Consensus       194 ~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  260 (265)
T PRK14252        194 PIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTEDYI  260 (265)
T ss_pred             HHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence            9999999999999863  689999999999999999999999999999999988874 33455555554

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=190.44  Aligned_cols=140  Identities=40%  Similarity=0.609  Sum_probs=113.9

Q ss_pred             ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+..   ..++++.++++.+++..   ...++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus        99 t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD  178 (250)
T PRK14266         99 SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD  178 (250)
T ss_pred             hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence            5788887654322211   12345677888888742   34678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +.++..+.++|.+++ + +.|||++||+++++..+||++++|++|++++.|+++++.. +..+....|+
T Consensus       179 ~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  245 (250)
T PRK14266        179 PISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRTEDYI  245 (250)
T ss_pred             HHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCChHHHHHh
Confidence            999999999999985 3 7899999999999999999999999999999999988743 3344444454

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.97  E-value=1.4e-29  Score=194.61  Aligned_cols=123  Identities=24%  Similarity=0.375  Sum_probs=106.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCC-----------CChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE-----------ISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |+++|+....     ....+++.++++.+|+. .+.++++..           ||||||||++||||++.+|+++|||||
T Consensus        92 tv~~nl~~~~-----~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEp  165 (275)
T cd03289          92 TFRKNLDPYG-----KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP  165 (275)
T ss_pred             hHHHHhhhcc-----CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            5678875321     12345677888999995 567777766           999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |++||+.+...+.+.|+++.  .++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus       166 ts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         166 SAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             cccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence            99999999999999999874  38999999999998875 99999999999999999998765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.2e-30  Score=186.51  Aligned_cols=130  Identities=28%  Similarity=0.377  Sum_probs=112.7

Q ss_pred             ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN------EPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt   70 (146)
                      ||+|.+.+|...++.  .  .+..-+..++...++. .+..+.+.+|||||||||.+||+|++      ++++|+|||||
T Consensus        91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt  169 (259)
T COG4559          91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT  169 (259)
T ss_pred             EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence            578888888654432  1  1122267889999995 68999999999999999999999975      55699999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+||+..+...+++.++++++ |..|+.|-||++.+..|||||++|++||+++.|+|++...
T Consensus       170 saLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt  230 (259)
T COG4559         170 SALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT  230 (259)
T ss_pred             cccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence            999999999999999999975 8999999999999999999999999999999999988654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.97  E-value=5.2e-30  Score=216.99  Aligned_cols=126  Identities=36%  Similarity=0.539  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ....+++.+++...|..+..          ....+..||||||||++|||||+++|++|||||||
T Consensus       562 SI~eNi~l~~p----~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT  637 (709)
T COG2274         562 SIRENIALGNP----EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT  637 (709)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence            68899988742    22345677777666653222          23456789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+.|.++..  |+|+|+|||+++.+. .||||++|++|+|+++|+.+++...
T Consensus       638 SaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         638 SALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             cccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence            99999999999999999864  899999999999885 5999999999999999999998654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=191.22  Aligned_cols=139  Identities=36%  Similarity=0.532  Sum_probs=114.5

Q ss_pred             ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |+.+|+.++....+. ..  ....+.++++.+++..   +..++++..||+|||||++|||||+.+|+++||||||+|||
T Consensus       106 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD  185 (257)
T PRK14246        106 SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID  185 (257)
T ss_pred             cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence            578888876432221 11  1234677889999852   35678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF  141 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~  141 (146)
                      +.++..+.+.|.+++ + +.|||++||+++++..+||++++|++|++++.|+++++.. +.+++.+.|
T Consensus       186 ~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~~~~~~~~  251 (257)
T PRK14246        186 IVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKY  251 (257)
T ss_pred             HHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCcHHHHHH
Confidence            999999999999985 3 6999999999999999999999999999999999888753 344565555

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=208.54  Aligned_cols=125  Identities=29%  Similarity=0.416  Sum_probs=107.3

Q ss_pred             ChHHHhhcCccc--cC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQL--RG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~--~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.+|+.++...  .+ ..  ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~  173 (501)
T PRK11288         95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA  173 (501)
T ss_pred             CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence            678999876421  11 11  1234677899999996 467889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP  127 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~  127 (146)
                      .++..+.+.|.++++ .|.|||++|||++++..+||++++|++|+++..++.
T Consensus       174 ~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        174 REIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            999999999999975 599999999999999999999999999999876654

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=9.4e-30  Score=221.11  Aligned_cols=126  Identities=37%  Similarity=0.567  Sum_probs=104.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.||..    ...++++.++++..+..+          ........+||||||||+||||||+.+|++|||||||
T Consensus       442 tI~eNI~~G~~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaT  517 (1228)
T KOG0055|consen  442 TIRENIRYGKP----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEAT  517 (1228)
T ss_pred             cHHHHHhcCCC----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcc
Confidence            68999999842    234555655555443311          1233445689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+.|.+..  .|+|.|+|+|++..+.+ +|+|++|++|+|++.|+++|+...
T Consensus       518 SaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  518 SALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL  577 (1228)
T ss_pred             cccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence            9999999999999999975  39999999999999987 999999999999999999998654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=2.3e-29  Score=182.28  Aligned_cols=99  Identities=43%  Similarity=0.595  Sum_probs=91.8

Q ss_pred             HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           25 LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        25 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      +++.+++. ++.++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+++++.|.|+|++||+++
T Consensus        81 ~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~  159 (180)
T cd03214          81 ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            67888996 56788899999999999999999999999999999999999999999999999997544899999999999


Q ss_pred             HHHhhcCeEEEEECCEEEEe
Q 046954          105 QIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus       105 ~~~~~~d~v~~l~~G~i~~~  124 (146)
                      ++.++||++++|++|+++..
T Consensus       160 ~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         160 LAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             HHHHhCCEEEEEECCEEEec
Confidence            99999999999999998764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=3.6e-29  Score=188.02  Aligned_cols=96  Identities=34%  Similarity=0.521  Sum_probs=88.7

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      ..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |+|||++||+++++. .||+++
T Consensus       131 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~  207 (237)
T cd03252         131 IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRII  207 (237)
T ss_pred             hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEE
Confidence            4567889999999999999999999999999999999999999999999999985 4 899999999999985 699999


Q ss_pred             EEECCEEEEeeCccccccC
Q 046954          115 LLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus       115 ~l~~G~i~~~g~~~~~~~~  133 (146)
                      +|++|+++..|+++++...
T Consensus       208 ~l~~G~i~~~~~~~~~~~~  226 (237)
T cd03252         208 VMEKGRIVEQGSHDELLAE  226 (237)
T ss_pred             EEECCEEEEEcCHHHHHhc
Confidence            9999999999998877543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.5e-29  Score=192.76  Aligned_cols=109  Identities=27%  Similarity=0.423  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++++ .|+|||++
T Consensus       121 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviiv  198 (272)
T PRK15056        121 QIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVS  198 (272)
T ss_pred             HHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            4567788999996 578899999999999999999999999999999999999999999999999999975 48999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ||+++++.++||+++++ +|+++..|+++++.
T Consensus       199 sH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        199 THNLGSVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             eCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            99999999999999877 89999999988764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.96  E-value=2.9e-29  Score=190.15  Aligned_cols=118  Identities=24%  Similarity=0.277  Sum_probs=99.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.||+.+......  .......++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||++||+.++..
T Consensus        77 tv~e~l~~~~~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~  153 (246)
T cd03237          77 TVRDLLSSITKDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM  153 (246)
T ss_pred             CHHHHHHHHhhhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            57777765422111  1123456788899995 57889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +.+.|++++++.|+|||+|||+++++..+||++++|+++..
T Consensus       154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~  194 (246)
T cd03237         154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS  194 (246)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence            99999999766689999999999999999999999976543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.96  E-value=2.9e-29  Score=190.09  Aligned_cols=109  Identities=27%  Similarity=0.394  Sum_probs=98.4

Q ss_pred             HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .++.++++.+++.....++++. +|||||+|||+|||||+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||+
T Consensus       128 ~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~  206 (252)
T CHL00131        128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIIL  206 (252)
T ss_pred             HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            3467789999996345677887 5999999999999999999999999999999999999999999999875 4899999


Q ss_pred             EecCHHHHHhh-cCeEEEEECCEEEEeeCccc
Q 046954           99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDL  129 (146)
Q Consensus        99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~  129 (146)
                      +||+++++..+ ||++++|++|++++.|+++.
T Consensus       207 ~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        207 ITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             EecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence            99999999887 89999999999999998874

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.6e-29  Score=194.86  Aligned_cols=111  Identities=42%  Similarity=0.604  Sum_probs=99.0

Q ss_pred             HHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           20 NEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        20 ~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      +.+..+++.+++.   ....++++.+|||||+|||+|||||+++|++|||||||+|||+.++..+.++|+++++  +.||
T Consensus       175 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~ti  252 (305)
T PRK14264        175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTV  252 (305)
T ss_pred             HHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEE
Confidence            4567788888874   1356788999999999999999999999999999999999999999999999999975  4899


Q ss_pred             EEEecCHHHHHhhcCeE-EEEECCEEEEeeCcccccc
Q 046954           97 VMVSHSIKQIQRIADVV-CLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~~  132 (146)
                      |++||+++.+..+||++ ++|++|++++.|+++++..
T Consensus       253 iivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~  289 (305)
T PRK14264        253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE  289 (305)
T ss_pred             EEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence            99999999999999996 5789999999999887753

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=2.8e-29  Score=186.64  Aligned_cols=116  Identities=35%  Similarity=0.551  Sum_probs=97.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCc-----------CCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTG-----------AEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |+.||+.++...    .....+.++++.+++. ++.++.+           .+||||||||++||||++.+|+++|||||
T Consensus        93 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP  167 (220)
T cd03245          93 TLRDNITLGAPL----ADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP  167 (220)
T ss_pred             hHHHHhhcCCCC----CCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            567887765321    1234566778888885 4555543           69999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      |+|||+.++..+.+.|.++++  +.|||++||+++.+ ++||++++|++|++++.
T Consensus       168 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         168 TSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             cccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence            999999999999999999864  48999999999986 79999999999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.96  E-value=2.3e-29  Score=187.32  Aligned_cols=119  Identities=30%  Similarity=0.490  Sum_probs=101.7

Q ss_pred             ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      |+.+|+.++..... ..  ...+++.++++.+++. +..++++.+||+|||||++|||||+.+|+++||||||+|||+.+
T Consensus        98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~  176 (220)
T TIGR02982        98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS  176 (220)
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence            57788877543321 11  1234578899999995 57888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +..+.+.|+++.++.|+|+|++||+++. .++||+|++|++|++
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       177 GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            9999999999976568999999999985 579999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.96  E-value=5e-29  Score=188.24  Aligned_cols=109  Identities=24%  Similarity=0.337  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           21 EVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .+.++++.+++..++.++++. +|||||||||+||||++.+|++|||||||++||+.++..+.+.|+++++ .|+|||++
T Consensus       123 ~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~  201 (248)
T PRK09580        123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIV  201 (248)
T ss_pred             HHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            456778888885445677775 7999999999999999999999999999999999999999999999875 48999999


Q ss_pred             ecCHHHHHhh-cCeEEEEECCEEEEeeCcccc
Q 046954          100 SHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ||+++.+..+ +|++++|++|+++..|+++.+
T Consensus       202 sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        202 THYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             eCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            9999999887 899999999999999887643

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.96  E-value=1.6e-29  Score=189.53  Aligned_cols=128  Identities=34%  Similarity=0.512  Sum_probs=101.6

Q ss_pred             ChHHHhhcCccccCCCccHH-----HHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKLTEN-----EVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |++||+.++...........     .+.++++.+  ++. ...++++.+||||||||++|||||+.+|+++||||||+||
T Consensus        91 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L  169 (234)
T cd03251          91 TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSAL  169 (234)
T ss_pred             cHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence            67888887643211000000     122344444  453 3467788999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+.++..+.+.|.++. + +.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus       170 D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~  225 (234)
T cd03251         170 DTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA  225 (234)
T ss_pred             CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence            9999999999999985 3 8999999999999976 99999999999999988877643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.96  E-value=3.6e-29  Score=190.05  Aligned_cols=111  Identities=28%  Similarity=0.436  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||+
T Consensus        98 ~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii  176 (251)
T PRK09544         98 KEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM  176 (251)
T ss_pred             HHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            35577889999995 57889999999999999999999999999999999999999999999999999987655899999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +||+++++.++||++++|+ |+++..|+++++.
T Consensus       177 vsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~  208 (251)
T PRK09544        177 VSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS  208 (251)
T ss_pred             EecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence            9999999999999999996 4788999887764

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.9e-29  Score=203.04  Aligned_cols=126  Identities=33%  Similarity=0.558  Sum_probs=108.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+.++.    ...+++++.++++.+||.+-          +.+..+..|||||+||++|||+|++|.+++||||||
T Consensus       427 Tlr~NL~lA~----~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT  502 (573)
T COG4987         427 TLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT  502 (573)
T ss_pred             HHHHHHhhcC----CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc
Confidence            6788887763    23457788889999888532          233446789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      .|||+.+.+++++.+.+..+  |+|+|+|||++..++. ||||++|++|+++++|+..++..+
T Consensus       503 egLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~  562 (573)
T COG4987         503 EGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLAN  562 (573)
T ss_pred             ccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhcc
Confidence            99999999999999999764  9999999999998865 899999999999999999988654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=2.6e-29  Score=229.23  Aligned_cols=128  Identities=22%  Similarity=0.361  Sum_probs=114.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |++||+.+....++.+.  .++.+.++++.+++. ++.++++++||||||||++||+||+.+|+++||||||+|||+.++
T Consensus      2028 Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257      2028 TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            68899987655544322  134567889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.+++.|.+++++ |+|||++||++++++.+||||++|++|+++..|+++++
T Consensus      2107 ~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257      2107 RMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999764 99999999999999999999999999999999998776

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.96  E-value=6.1e-29  Score=207.21  Aligned_cols=127  Identities=38%  Similarity=0.536  Sum_probs=105.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||++||.++...    .+++++.++++..++.+          ......+..||||||||++||||++.+|++++|||||
T Consensus       418 TI~~NI~~g~~~----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT  493 (567)
T COG1132         418 TIRENIALGRPD----ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT  493 (567)
T ss_pred             cHHHHHhcCCCC----CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            789999988432    24456666665554321          1233345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+...+.+.+.++.+  ++|+|+|+|+++.+.. ||+|++|++|++++.|+.+++....
T Consensus       494 SalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~~  554 (567)
T COG1132         494 SALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAKG  554 (567)
T ss_pred             cccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHcC
Confidence            99999999999999998763  7899999999999987 9999999999999999999986653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.96  E-value=4.3e-29  Score=187.67  Aligned_cols=95  Identities=38%  Similarity=0.605  Sum_probs=87.7

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      ..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++  .|+|||++||+++++. +||+++
T Consensus       132 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~  208 (238)
T cd03249         132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIA  208 (238)
T ss_pred             eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEE
Confidence            3566789999999999999999999999999999999999999999999999985  4899999999999997 899999


Q ss_pred             EEECCEEEEeeCcccccc
Q 046954          115 LLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus       115 ~l~~G~i~~~g~~~~~~~  132 (146)
                      +|++|++++.++.+++..
T Consensus       209 ~l~~G~i~~~~~~~~~~~  226 (238)
T cd03249         209 VLQNGQVVEQGTHDELMA  226 (238)
T ss_pred             EEECCEEEEeCCHHHHhh
Confidence            999999999988877644

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.7e-29  Score=204.87  Aligned_cols=110  Identities=22%  Similarity=0.371  Sum_probs=99.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +.+..+++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+++.|.++++ +|.|||++
T Consensus       369 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v  447 (491)
T PRK10982        369 SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII  447 (491)
T ss_pred             HHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE
Confidence            45677889988853356899999999999999999999999999999999999999999999999999975 59999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |||++++..+|||+++|++|+++..+++..+
T Consensus       448 sHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~  478 (491)
T PRK10982        448 SSEMPELLGITDRILVMSNGLVAGIVDTKTT  478 (491)
T ss_pred             CCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            9999999999999999999999987776543

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.7e-29  Score=207.96  Aligned_cols=130  Identities=32%  Similarity=0.543  Sum_probs=107.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCC-------Ch---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+|||.||..    ...++++..+.+..+-       ++   .....++.+||||||||+||||||+++|.+|||||.|
T Consensus       557 sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT  632 (716)
T KOG0058|consen  557 SIRENIAYGLD----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT  632 (716)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence            68999999975    2344555555544432       11   1234567799999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      |+||.++...+.+.|.++.+  ++|||+|.|.++.+++ ||+|+++++|++++.|+.+++.......
T Consensus       633 SALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~gl  696 (716)
T KOG0058|consen  633 SALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPNGL  696 (716)
T ss_pred             hhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcccH
Confidence            99999999999999999864  7999999999999976 9999999999999999999987654333

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.96  E-value=8.2e-29  Score=207.26  Aligned_cols=129  Identities=32%  Similarity=0.485  Sum_probs=107.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++||.++.     ..+++++.++++.+|+.+.          .....+..||||||||++|||||+.+|+++||||||
T Consensus       430 Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpt  504 (592)
T PRK10790        430 TFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEAT  504 (592)
T ss_pred             hHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            6889998863     2345677788888776421          112335679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      ++||+.+.+.+.+.|.++.+  ++|+|+|||+++.+. .||+|++|++|++++.|+.+++......+
T Consensus       505 s~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~~~~y  568 (592)
T PRK10790        505 ANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAAQGRY  568 (592)
T ss_pred             ccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhCCCHH
Confidence            99999999999999999853  799999999998776 49999999999999999999886544433

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.96  E-value=1.1e-28  Score=206.14  Aligned_cols=126  Identities=27%  Similarity=0.519  Sum_probs=108.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK----------TGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++.++++.+++. ++.++          .+..||||||||++||||++++|+++||||||
T Consensus       429 ti~~Ni~~~~~----~~~~~~i~~al~~~~l~-~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t  503 (574)
T PRK11160        429 TLRDNLLLAAP----NASDEALIEVLQQVGLE-KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT  503 (574)
T ss_pred             cHHHHhhcCCC----ccCHHHHHHHHHHcCCH-HHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            68899988632    23566788889998885 34333          45689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      ++||+.+.+.+.+.+.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus       504 s~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  564 (574)
T PRK11160        504 EGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQ  564 (574)
T ss_pred             ccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcC
Confidence            9999999999999999985  38999999999998865 9999999999999999999886543

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=205.89  Aligned_cols=131  Identities=31%  Similarity=0.435  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..   ...+++++.++++.+++.+.          ........||||||||++|||||+++|+++||||||
T Consensus       432 Ti~~Ni~~~~~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt  508 (582)
T PRK11176        432 TIANNIAYART---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT  508 (582)
T ss_pred             hHHHHHhcCCC---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            68999988631   11345677777777775321          112234679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      ++||+.+...+.+.|.++.+  ++|+|+|||+++.+. .||+|++|++|++++.|+.+++......+
T Consensus       509 saLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y  572 (582)
T PRK11176        509 SALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQNGVY  572 (582)
T ss_pred             ccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence            99999999999999999753  799999999998765 59999999999999999999886544333

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.1e-28  Score=209.66  Aligned_cols=124  Identities=32%  Similarity=0.497  Sum_probs=104.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..     .+++++.++++..++.+..          ....+..||||||||++||||++++|+++||||||
T Consensus       542 TI~eNi~~~~~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT  616 (686)
T TIGR03797       542 SIFENIAGGAP-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT  616 (686)
T ss_pred             cHHHHHhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            78999988632     3466788888888874321          11234679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+.+.+.+.|+++    ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus       617 S~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~~  675 (686)
T TIGR03797       617 SALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE  675 (686)
T ss_pred             cCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhCC
Confidence            999999999999998775    5799999999988865 9999999999999999999886543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.96  E-value=6.9e-29  Score=186.27  Aligned_cols=95  Identities=37%  Similarity=0.569  Sum_probs=87.3

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |.|||++||+++.+.. ||+++
T Consensus       130 ~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~  206 (236)
T cd03253         130 IVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKII  206 (236)
T ss_pred             hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEE
Confidence            3456678999999999999999999999999999999999999999999999986 4 8999999999999965 99999


Q ss_pred             EEECCEEEEeeCcccccc
Q 046954          115 LLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus       115 ~l~~G~i~~~g~~~~~~~  132 (146)
                      +|++|+++..|+.+++..
T Consensus       207 ~l~~g~i~~~~~~~~~~~  224 (236)
T cd03253         207 VLKDGRIVERGTHEELLA  224 (236)
T ss_pred             EEECCEEEeeCCHHHHhh
Confidence            999999999988877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=1.3e-28  Score=184.07  Aligned_cols=93  Identities=35%  Similarity=0.571  Sum_probs=85.0

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      .++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |.|||++||+++++. .||++++
T Consensus       133 ~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~  209 (229)
T cd03254         133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILV  209 (229)
T ss_pred             hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEE
Confidence            456678999999999999999999999999999999999999999999999985 3 899999999999986 5999999


Q ss_pred             EECCEEEEeeCccccc
Q 046954          116 LVNGEIVEVLKPDLLS  131 (146)
Q Consensus       116 l~~G~i~~~g~~~~~~  131 (146)
                      |++|+++..++.+++.
T Consensus       210 l~~g~~~~~~~~~~~~  225 (229)
T cd03254         210 LDDGKIIEEGTHDELL  225 (229)
T ss_pred             EeCCeEEEeCCHHHHH
Confidence            9999999888776553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.96  E-value=1.2e-28  Score=209.91  Aligned_cols=124  Identities=32%  Similarity=0.493  Sum_probs=103.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++.    ...+++++.++++..++.+.          .....+..||||||||++||||++++|+++||||||
T Consensus       568 Ti~eNi~l~~----~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt  643 (710)
T TIGR03796       568 TVRDNLTLWD----PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT  643 (710)
T ss_pred             cHHHHhhCCC----CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence            7899998752    12345667777777766421          122345789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+.|++    .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus       644 S~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~  701 (710)
T TIGR03796       644 SALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV  701 (710)
T ss_pred             ccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence            99999999999999875    38999999999998865 999999999999999999988654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=6.6e-29  Score=226.62  Aligned_cols=127  Identities=28%  Similarity=0.484  Sum_probs=113.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++..  ..++++.++++.+|+. +..++++++|||||||||+||+||+.+|+++||||||+|||+.++
T Consensus      1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257      1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence            7899999876554432  1235678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++..+
T Consensus      1098 ~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257      1098 RSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred             HHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999984 3 99999999999999999999999999999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=1.2e-28  Score=206.10  Aligned_cols=122  Identities=26%  Similarity=0.363  Sum_probs=105.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.+|+.++.....   ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       416 tv~e~l~~~~~~~~---~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~  491 (590)
T PRK13409        416 TVEDLLRSITDDLG---SSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA  491 (590)
T ss_pred             cHHHHHHHHhhhcC---hHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence            67888876532111   223467889999996 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP  127 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~  127 (146)
                      +.+.|++++++.|.|+|+||||++++..+|||+++|+ |++...|+.
T Consensus       492 l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~  537 (590)
T PRK13409        492 VAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHA  537 (590)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeeec
Confidence            9999999987668999999999999999999999995 577776663

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=5.4e-29  Score=216.40  Aligned_cols=128  Identities=36%  Similarity=0.585  Sum_probs=107.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCC-------Ch---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.||..   . ...+++.++++..+.       +.   .....++.+||||||||+|||||+++||++|||||.|
T Consensus      1079 TIrENI~YG~~---~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1079 TIRENIAYGSE---E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred             cHHHHHhccCC---C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence            78999999821   1 345667666665543       21   2234557799999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH  135 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  135 (146)
                      |+||.++.+.+.+.|.+..  .|+|+|+|.|.+..+.. ||.|+|+++|+|++.|+.+++.+++.
T Consensus      1155 SALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1155 SALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred             hhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCC
Confidence            9999999999999999985  39999999999999976 99999999999999999999876433

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=2.3e-28  Score=183.07  Aligned_cols=101  Identities=32%  Similarity=0.433  Sum_probs=91.5

Q ss_pred             HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      .++++.+++.....++++.+|||||||||+|||||+.+|  +++||||||+|||+.++..+.+.|.++++ .|.|+|++|
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it  196 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE  196 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence            467888898633478899999999999999999999998  59999999999999999999999999975 599999999


Q ss_pred             cCHHHHHhhcCeEEEE------ECCEEEEee
Q 046954          101 HSIKQIQRIADVVCLL------VNGEIVEVL  125 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l------~~G~i~~~g  125 (146)
                      |+++++ .+||++++|      ++|+|+++|
T Consensus       197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         197 HDEDTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             eCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence            999987 589999999      999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.96  E-value=1.8e-28  Score=182.16  Aligned_cols=126  Identities=17%  Similarity=0.155  Sum_probs=103.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.+....++.. ..+....+.+.++++ ...++++.+||+|||||++||||++.+|+++||||||+++|+.+++.
T Consensus        65 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~  142 (213)
T PRK15177         65 TGEENARMMASLYGLD-GDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR  142 (213)
T ss_pred             cHHHHHHHHHHHcCCC-HHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence            6789998765443322 122223344567775 46788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +.+.+.+..+  +.++|++||++..+..+||++++|++|++++.++.++.
T Consensus       143 ~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        143 MQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             HHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence            9998876543  46899999999999999999999999999998887765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=198.27  Aligned_cols=128  Identities=30%  Similarity=0.446  Sum_probs=111.0

Q ss_pred             ChHHHhhcCccccC---C-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRG---K-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~---~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||.|||.++.....   . .  ...+++.++++.+++..+ .+.++++||.||||.|+||||+..+++++|||||||+|+
T Consensus        99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt  177 (500)
T COG1129          99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT  177 (500)
T ss_pred             cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            68999988755432   1 1  123567788999988533 788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC-cccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLL  130 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~-~~~~  130 (146)
                      ......++++++++++ .|.+||+|||.++++.++||||.||++|+.+.+.+ ..++
T Consensus       178 ~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~  233 (500)
T COG1129         178 VKETERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET  233 (500)
T ss_pred             HHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence            9999999999999975 59999999999999999999999999999998887 3544

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.96  E-value=2.5e-28  Score=207.64  Aligned_cols=124  Identities=35%  Similarity=0.509  Sum_probs=103.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ..+++++.++++..++.+.          .....+..||||||||++||||++.+|+++||||||
T Consensus       554 TI~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T  629 (694)
T TIGR03375       554 TLRDNIALGAP----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT  629 (694)
T ss_pred             hHHHHHhCCCC----CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            68999988632    2346677777777766321          122345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |+||+.+.+.+.+.|.++.+  ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus       630 s~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G~~~eLl  687 (694)
T TIGR03375       630 SAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADGPKDQVL  687 (694)
T ss_pred             CCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeCCHHHHH
Confidence            99999999999999999863  89999999999887 569999999999999999988764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.96  E-value=2.9e-28  Score=181.68  Aligned_cols=115  Identities=24%  Similarity=0.330  Sum_probs=96.4

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+.....+..  ...+++.++++.+++...+.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus       106 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~  185 (224)
T TIGR02324       106 SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR  185 (224)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            5678887643222211  12345778899999964345788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +.+.+.|+++++ .|+|||++||+++++..+||+++.+
T Consensus       186 ~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       186 QVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEec
Confidence            999999999965 4899999999999999999999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.96  E-value=5e-28  Score=201.50  Aligned_cols=128  Identities=34%  Similarity=0.501  Sum_probs=105.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |++||+.++..   ....++++.++++.+++.+ +.+           .....||||||||++||||++.+|+++|||||
T Consensus       421 Ti~~Ni~~~~~---~~~~~~~i~~~l~~~~l~~-~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp  496 (571)
T TIGR02203       421 TIANNIAYGRT---EQADRAEIERALAAAYAQD-FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA  496 (571)
T ss_pred             cHHHHHhcCCC---CCCCHHHHHHHHHHcChHH-HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            68899987631   1234667778888877742 222           22457999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH  135 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  135 (146)
                      |++||+.+.+.+.+.|.++.+  ++|+|+|||++..+ ..||+|++|++|++++.|+.+++.....
T Consensus       497 ts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~~~~  559 (571)
T TIGR02203       497 TSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLARNG  559 (571)
T ss_pred             cccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence            999999999999999998753  79999999999765 5699999999999999999988764433

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.96  E-value=3e-28  Score=179.34  Aligned_cols=113  Identities=34%  Similarity=0.493  Sum_probs=95.7

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+..  ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~  170 (206)
T TIGR03608        92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR  170 (206)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence            5788887754322211  1234678899999995 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ..+.+.|+++.+ .|.|+|++||+++.+ .+||++++|
T Consensus       171 ~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       171 DEVLDLLLELND-EGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            999999999975 489999999999866 589999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=6.1e-28  Score=184.06  Aligned_cols=121  Identities=27%  Similarity=0.409  Sum_probs=101.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~---p~llllDEPt~~LD~~~   77 (146)
                      |+.|++.|.....    ...++.++++.+||.....++++.+|||||+||++||++|+.+   |+++||||||+|||+..
T Consensus       132 tv~e~~~~~~~~~----~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~  207 (261)
T cd03271         132 TVEEALEFFENIP----KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD  207 (261)
T ss_pred             CHHHHHHHHHhhh----hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence            4556655543221    1235667889999963247889999999999999999999996   79999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCc
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKP  127 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~  127 (146)
                      +..+.+.|.++.+ .|.|+|++||+++++. .||+++.|      ++|+|++.|++
T Consensus       208 ~~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         208 VKKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence            9999999999975 5999999999999885 69999999      89999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.96  E-value=4.6e-28  Score=202.68  Aligned_cols=126  Identities=33%  Similarity=0.496  Sum_probs=102.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++..+++.+++.+          ......+..||||||||++|||||+++|+++||||||
T Consensus       424 Ti~~Ni~~~~~----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt  499 (588)
T PRK13657        424 SIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT  499 (588)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            68999988631    123555666666665531          1122345679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+.|.++.  .++|+|+|||+++.+ +.||+|++|++|++++.|+.+++...
T Consensus       500 s~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g~~~~l~~~  559 (588)
T PRK13657        500 SALDVETEAKVKAALDELM--KGRTTFIIAHRLSTV-RNADRILVFDNGRVVESGSFDELVAR  559 (588)
T ss_pred             cCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeCCHHHHHHC
Confidence            9999999999999999875  389999999999876 56999999999999999998887543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.96  E-value=5.2e-28  Score=179.87  Aligned_cols=117  Identities=28%  Similarity=0.473  Sum_probs=96.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhh-----------cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------SKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |+.||+.+...     ...+++.++++.+++. +..           ++++.+||+||+||++|||||+.+|+++|||||
T Consensus        93 tv~enl~~~~~-----~~~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP  166 (221)
T cd03244          93 TIRSNLDPFGE-----YSDEELWQALERVGLK-EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA  166 (221)
T ss_pred             hHHHHhCcCCC-----CCHHHHHHHHHHhCcH-HHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            56777764321     1234556666766664 233           457899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      |+|||+.++..+.+.|+++.+  +.|||++||+++++.. ||++++|++|++++.|+
T Consensus       167 ~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         167 TASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             cccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            999999999999999999853  6899999999999875 99999999999988765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.96  E-value=1.9e-28  Score=207.13  Aligned_cols=128  Identities=27%  Similarity=0.282  Sum_probs=108.5

Q ss_pred             ChHHHhhcCccccCC---Cc--cHHHHHHHHHHcCCChhhh-----cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGK---KL--TENEVYKLLSLADLDSSFL-----SKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.+....+..   ..  ..++++++++.+|+. +..     ++.+++|||||||||+||++|+.+|++++|||||
T Consensus       156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt  234 (659)
T PLN03211        156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT  234 (659)
T ss_pred             CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence            789999886533211   11  124577889999995 344     3456789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus       235 sgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~  294 (659)
T PLN03211        235 SGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA  294 (659)
T ss_pred             CCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH
Confidence            99999999999999999986 5999999999998 58899999999999999999998765

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=3.5e-28  Score=179.16  Aligned_cols=113  Identities=25%  Similarity=0.376  Sum_probs=98.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++...++. ...+++.++++.+|+. ++.++++.+||||||||++||||++++|+++||||||++||+.++..
T Consensus        90 tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  167 (204)
T PRK13538         90 TALENLRFYQRLHGP-GDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR  167 (204)
T ss_pred             cHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence            578888776433221 2345678899999995 57789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +.++|+++++ .|.|+|++||+++++..+.+|++++
T Consensus       168 l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        168 LEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence            9999999875 4899999999999999888888877

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=4.4e-28  Score=179.90  Aligned_cols=115  Identities=20%  Similarity=0.277  Sum_probs=98.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++...++. ...+.+..+++.+++. +..++++.+||||||||++||||++.+|+++||||||++||+.+++.
T Consensus        98 t~~e~l~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (214)
T PRK13543         98 STLENLHFLCGLHGR-RAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL  175 (214)
T ss_pred             cHHHHHHHHHHhcCC-cHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            567887665332221 1234567889999996 56789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      +.+.|.++++ .|.|+|++||+++++.++||++++++.
T Consensus       176 l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        176 VNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999875 489999999999999999999999864

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.96  E-value=2.3e-28  Score=205.59  Aligned_cols=128  Identities=27%  Similarity=0.409  Sum_probs=110.7

Q ss_pred             ChHHHhhcCccccCCC-----ccHHHHHHHHHHcCCChhhhcCCcC------CCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLSKTGA------EISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.|++..+...     ...+++.++++.+|+. +..|..++      .|||||||||+||++|+.+|++++||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence            7999999876543211     1234578899999995 46677665      5999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus       194 tsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~  254 (617)
T TIGR00955       194 TSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA  254 (617)
T ss_pred             CcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence            999999999999999999986 4999999999995 78899999999999999999998764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.96  E-value=9e-28  Score=204.27  Aligned_cols=130  Identities=28%  Similarity=0.407  Sum_probs=105.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ....+++.++++..++.+          ......+.+||||||||++||||++++|+++||||||
T Consensus       546 ti~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt  621 (694)
T TIGR01846       546 SIRDNIALCNP----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT  621 (694)
T ss_pred             hHHHHHhcCCC----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            68899987531    223556666666665532          1223446789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      ++||+.+.+.+.+.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++......+
T Consensus       622 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~~~~y  685 (694)
T TIGR01846       622 SALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLALQGLY  685 (694)
T ss_pred             cCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence            9999999999999999985  38999999999998865 9999999999999999999886543333

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.95  E-value=5.8e-28  Score=217.60  Aligned_cols=138  Identities=33%  Similarity=0.523  Sum_probs=109.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++..    ...++++.++++..++.+.          .....+..||||||||++|||||+++|++|||||||
T Consensus      1311 TIreNI~~g~~----~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265       1311 SIYENIKFGKE----DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            78999999742    2345677888877766321          122345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC----CEEE-EeeCccccccCCCHHHHHHhh
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN----GEIV-EVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      |+||+.+.+.+.+.|.++.+..++|+|+|||+++.+.. ||+|++|++    |+++ +.|+.+++.......+..+..
T Consensus      1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265       1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred             cccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence            99999999999999999852248999999999998865 999999999    9955 899999986532333344443

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.95  E-value=6e-28  Score=205.85  Aligned_cols=124  Identities=31%  Similarity=0.493  Sum_probs=100.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++..    ...++++.++++..++.+.          .....+.+||||||||++||||++++|+++||||||
T Consensus       570 TIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT  645 (711)
T TIGR00958       570 SVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT  645 (711)
T ss_pred             CHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence            78999988742    1235667777777776321          122335689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+ .. .  ..++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus       646 SaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~  703 (711)
T TIGR00958       646 SALDAECEQLLQE-SR-S--RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED  703 (711)
T ss_pred             cccCHHHHHHHHH-hh-c--cCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence            9999999999988 22 2  24899999999999875 4999999999999999999987654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.95  E-value=3.8e-28  Score=181.28  Aligned_cols=117  Identities=35%  Similarity=0.526  Sum_probs=95.0

Q ss_pred             ChHHHhhcCccccCCCc-cH----HHHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKL-TE----NEVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~-~~----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      |+.+|+.++........ ..    ..+.++++.+  |+. ...+.++.+|||||||||+|||||+.+|+++||||||+||
T Consensus       103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L  181 (226)
T cd03248         103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSAL  181 (226)
T ss_pred             hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            57888877543211100 00    1134667777  675 4578889999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      |+.++..+.+.|+++++  +.|+|++||+++++. .||++++|++|++
T Consensus       182 D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         182 DAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI  226 (226)
T ss_pred             CHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence            99999999999999863  689999999999996 4999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.5e-28  Score=200.15  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=104.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+..   ......+++..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       400 t~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  476 (530)
T PRK15064        400 TLFDWMSQWR---QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES  476 (530)
T ss_pred             cHHHHHHHhc---cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            4566665321   1112345678899999985346789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE-EeeCccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS  131 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  131 (146)
                      +.+.|.++    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       477 l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        477 LNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             HHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence            99998875    359999999999999999999999999997 777776653

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.95  E-value=6.9e-28  Score=205.33  Aligned_cols=126  Identities=33%  Similarity=0.558  Sum_probs=103.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..   ...+++++.++++..++.+.          .....+..||||||||++||||++++|++|||||||
T Consensus       563 TI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T  639 (708)
T TIGR01193       563 SILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST  639 (708)
T ss_pred             HHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence            68999998631   12345667777777666321          122345789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ++||+.+.+.+.+.|.++   .|+|+|+|||+++.+ +.||+|++|++|++++.|+.+++...
T Consensus       640 s~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       640 SNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             ccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHH-HcCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999875   279999999999877 46999999999999999999887654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=9.3e-28  Score=200.29  Aligned_cols=126  Identities=29%  Similarity=0.434  Sum_probs=103.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++..+++..++.+.          ..+..+..||||||||++||||++++|+++||||||
T Consensus       404 ti~~Ni~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt  479 (569)
T PRK10789        404 TVANNIALGRP----DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL  479 (569)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence            68899987632    1234556666666665321          223445789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ++||+.+.+.+.+.|+++.  .|+|+|+|||+++.+. .||+|++|++|++++.|+.+++...
T Consensus       480 s~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  539 (569)
T PRK10789        480 SAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQ  539 (569)
T ss_pred             ccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHc
Confidence            9999999999999999975  3899999999998875 5999999999999999999887543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.95  E-value=1.3e-27  Score=200.12  Aligned_cols=127  Identities=28%  Similarity=0.469  Sum_probs=102.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCC----------hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++...    ..++++.++++..++.          +...+..+..||||||||++|||||+.+|+++||||||
T Consensus       424 ti~~Ni~~~~~~----~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt  499 (585)
T TIGR01192       424 SIRENIRLGREG----ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT  499 (585)
T ss_pred             cHHHHHhcCCCC----CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            688999886321    1234444444443331          12344567789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      ++||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|+.+++....
T Consensus       500 s~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~  560 (585)
T TIGR01192       500 SALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQKD  560 (585)
T ss_pred             cCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHCC
Confidence            9999999999999999874  3899999999999885 59999999999999999998875543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=4.7e-28  Score=198.85  Aligned_cols=107  Identities=22%  Similarity=0.372  Sum_probs=95.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +++.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.+++++.+.|||++
T Consensus       379 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv  458 (490)
T PRK10938        379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV  458 (490)
T ss_pred             HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            45778999999963267899999999999999999999999999999999999999999999999999976534579999


Q ss_pred             ecCHHHHHh-hcCeEEEEECCEEEEeeC
Q 046954          100 SHSIKQIQR-IADVVCLLVNGEIVEVLK  126 (146)
Q Consensus       100 tH~~~~~~~-~~d~v~~l~~G~i~~~g~  126 (146)
                      |||++++.+ +||++++|++|++++..+
T Consensus       459 sHd~~~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        459 SHHAEDAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             ecchhhhhhhhheeEEEecCCceEEeec
Confidence            999999987 599999999999876543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=4.7e-28  Score=171.95  Aligned_cols=121  Identities=36%  Similarity=0.492  Sum_probs=111.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||++|+.|+-..++...+...+...+++++++...+++.+.+||||||||++|+|-|..-|++|+||||||+||+.+++.
T Consensus        92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~  171 (223)
T COG4619          92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN  171 (223)
T ss_pred             chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence            78999999866665545667788899999998778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +-++|.++.++++.++++||||.+++.+.+|+++-+..|++
T Consensus       172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            99999999888899999999999999999999999999976

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.95  E-value=2.1e-27  Score=175.24  Aligned_cols=88  Identities=32%  Similarity=0.471  Sum_probs=81.7

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++. + |.|+|++||+++++.. ||++++|
T Consensus       120 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l  196 (207)
T cd03369         120 SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVM  196 (207)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEE
Confidence            45788999999999999999999999999999999999999999999999984 3 8999999999999876 9999999


Q ss_pred             ECCEEEEeeCc
Q 046954          117 VNGEIVEVLKP  127 (146)
Q Consensus       117 ~~G~i~~~g~~  127 (146)
                      ++|+++..|++
T Consensus       197 ~~g~i~~~g~~  207 (207)
T cd03369         197 DAGEVKEYDHP  207 (207)
T ss_pred             ECCEEEecCCC
Confidence            99999887753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.95  E-value=1.4e-27  Score=215.99  Aligned_cols=126  Identities=26%  Similarity=0.397  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+.++.     ...++++.++++..++.+..          ....+..||||||||++|||||+++|++|||||||
T Consensus      1325 TIr~NL~~~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT 1399 (1495)
T PLN03232       1325 TVRFNIDPFS-----EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399 (1495)
T ss_pred             cHHHHcCCCC-----CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            7889997652     23466778888887774211          12335689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+.+.+.+.|++..  .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++....
T Consensus      1400 SaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232       1400 ASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred             ccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence            9999999999999999874  38999999999999977 9999999999999999999986543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.95  E-value=1.5e-27  Score=216.57  Aligned_cols=125  Identities=28%  Similarity=0.404  Sum_probs=105.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++||.++.     ...++++.++++..++.+..          ....+..||||||||++|||||+++|++|||||||
T Consensus      1328 TIreNLd~~~-----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT 1402 (1622)
T PLN03130       1328 TVRFNLDPFN-----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402 (1622)
T ss_pred             cHHHHhCcCC-----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            7889997652     23466788888877763211          12335689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||..+.+.+.+.|++..  .++|+|+|+|+++.+.. ||||++|++|+|++.|+++++...
T Consensus      1403 SaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130       1403 AAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred             CCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999875  38999999999999977 899999999999999999998653

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.95  E-value=1.9e-27  Score=197.50  Aligned_cols=125  Identities=31%  Similarity=0.480  Sum_probs=99.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCC----------hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++.++++..++.          +...+..+..||||||||++||||++++|+++||||||
T Consensus       407 ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt  482 (544)
T TIGR01842       407 TVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN  482 (544)
T ss_pred             cHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            67899975431    12334444444443331          12345567889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ++||+.+...+.+.|.++.. .|+|+|++||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus       483 s~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       483 SNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             cccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHh
Confidence            99999999999999999853 489999999999876 569999999999999999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.95  E-value=1.8e-27  Score=175.05  Aligned_cols=110  Identities=27%  Similarity=0.376  Sum_probs=96.2

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |++||+.+....    ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus        89 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~  163 (201)
T cd03231          89 SVLENLRFWHAD----HSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR  163 (201)
T ss_pred             CHHHHHHhhccc----ccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence            567887764321    1345678899999996 56788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +.+.|.++++ .|.|+|++||+......+|++++.+
T Consensus       164 l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         164 FAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence            9999999875 4899999999999999999999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.95  E-value=2.1e-27  Score=197.61  Aligned_cols=126  Identities=27%  Similarity=0.288  Sum_probs=103.2

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.||+.++...........++..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       402 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  481 (552)
T TIGR03719       402 TVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA  481 (552)
T ss_pred             cHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence            67888887643222111233456789999995335688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-CEEE-EeeCcccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLL  130 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~  130 (146)
                      +.+.|.++.   + |||+||||++++..+||++++|++ |+++ ..|+.+++
T Consensus       482 l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~  529 (552)
T TIGR03719       482 LEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY  529 (552)
T ss_pred             HHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence            999999872   4 899999999999999999999987 5876 45666544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.95  E-value=3.7e-27  Score=196.52  Aligned_cols=126  Identities=35%  Similarity=0.491  Sum_probs=103.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++.++++.+++.+.          .....+..||||||||++||||++++|+++||||||
T Consensus       429 Ti~~Ni~~~~~----~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt  504 (576)
T TIGR02204       429 SVMENIRYGRP----DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT  504 (576)
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence            68999987631    1235567777777665311          112345679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ++||+.+.+.+.+.++++.+  ++|+|+|||++..+ ..+|+|++|++|++++.|+.+++...
T Consensus       505 s~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~~~~l~~~  564 (576)
T TIGR02204       505 SALDAESEQLVQQALETLMK--GRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTHAELIAK  564 (576)
T ss_pred             cccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHH-HhCCEEEEEECCEEEeeecHHHHHHc
Confidence            99999999999999999853  89999999999776 56999999999999999998887554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.95  E-value=2.2e-27  Score=197.69  Aligned_cols=127  Identities=25%  Similarity=0.266  Sum_probs=104.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.+|+.++............+..+++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..
T Consensus       404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  483 (556)
T PRK11819        404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRA  483 (556)
T ss_pred             CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            67888887643222111233456789999995335688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-CEEE-EeeCccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLS  131 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~  131 (146)
                      +.+.|.++.   | |||+||||++++..+||++++|++ |++. ..|+.+++.
T Consensus       484 l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~  532 (556)
T PRK11819        484 LEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYE  532 (556)
T ss_pred             HHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence            999998862   4 899999999999999999999996 7876 467766553

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=2.7e-27  Score=174.44  Aligned_cols=90  Identities=22%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHhhcCeEE
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV-SHSIKQIQRIADVVC  114 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i-tH~~~~~~~~~d~v~  114 (146)
                      .++++.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.+.|+|++ +|+.+.+.++||+++
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~  191 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL  191 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence            4677889999999999999999999999999999999999999999999999976546666555 566789999999999


Q ss_pred             EEECCEEEEee
Q 046954          115 LLVNGEIVEVL  125 (146)
Q Consensus       115 ~l~~G~i~~~g  125 (146)
                      +|++|+++..|
T Consensus       192 ~l~~G~i~~~g  202 (202)
T cd03233         192 VLYEGRQIYYG  202 (202)
T ss_pred             EEECCEEEecC
Confidence            99999997653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-27  Score=191.80  Aligned_cols=133  Identities=30%  Similarity=0.456  Sum_probs=111.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||..||.+|.    .+...+++.+++++.++.+.+          ....+..|||||||||+||||++.+|+++++||||
T Consensus       440 TIl~NI~YGn----~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT  515 (591)
T KOG0057|consen  440 TILYNIKYGN----PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT  515 (591)
T ss_pred             hHHHHhhcCC----CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence            6788888874    344677888999999884321          22345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      |+||.++.+.+.+.+.+..  .|+|+|+|-|+++.+.. ||+|++|++|++.+.|+.+++.. +......+
T Consensus       516 S~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~  582 (591)
T KOG0057|consen  516 SALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA-PSELYADL  582 (591)
T ss_pred             cccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence            9999999999999999953  38999999999998876 89999999999999999999876 34443333

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.95  E-value=8.9e-27  Score=179.68  Aligned_cols=101  Identities=24%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+ .++. + +.|||++||+++.+ ..||++++|
T Consensus       155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~-~~~d~i~~l  231 (282)
T cd03291         155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHL-KKADKILIL  231 (282)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHH-HhCCEEEEE
Confidence            346799999999999999999999999999999999999999999865 5554 3 78999999999987 579999999


Q ss_pred             ECCEEEEeeCccccccCCCHHHHHH
Q 046954          117 VNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus       117 ~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      ++|+++..|+++++......+...+
T Consensus       232 ~~G~i~~~g~~~~~~~~~~~~~~~~  256 (282)
T cd03291         232 HEGSSYFYGTFSELQSLRPDFSSKL  256 (282)
T ss_pred             ECCEEEEECCHHHHHhcchHHHHHH
Confidence            9999999999887754333344443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.95  E-value=4.3e-27  Score=170.15  Aligned_cols=98  Identities=26%  Similarity=0.348  Sum_probs=87.7

Q ss_pred             HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      .++++.+++.....++++.+||||||||++||||++.+  |+++||||||++||+.+++.+.+.|+++++ .|.|||++|
T Consensus        68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivS  146 (176)
T cd03238          68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIE  146 (176)
T ss_pred             HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence            45788899853236888999999999999999999999  999999999999999999999999999875 599999999


Q ss_pred             cCHHHHHhhcCeEEEEECCEEE
Q 046954          101 HSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      |+++++ ..||++++|++|+..
T Consensus       147 H~~~~~-~~~d~i~~l~~g~~~  167 (176)
T cd03238         147 HNLDVL-SSADWIIDFGPGSGK  167 (176)
T ss_pred             CCHHHH-HhCCEEEEECCCCCC
Confidence            999987 579999999886653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.95  E-value=3.6e-27  Score=168.51  Aligned_cols=81  Identities=37%  Similarity=0.686  Sum_probs=77.4

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +|||||+||++||||++.+|+++||||||++||+.+++.+.+.|+++++ .|.|+|++||+++++.++||++++|++|++
T Consensus        82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i  160 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRV  160 (163)
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            4999999999999999999999999999999999999999999999975 489999999999999999999999999998


Q ss_pred             EE
Q 046954          122 VE  123 (146)
Q Consensus       122 ~~  123 (146)
                      ++
T Consensus       161 ~~  162 (163)
T cd03216         161 VG  162 (163)
T ss_pred             Ee
Confidence            75

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-27  Score=195.79  Aligned_cols=108  Identities=28%  Similarity=0.316  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+    .|.|||+|
T Consensus       133 ~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiiv  208 (530)
T PRK15064        133 ARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIII  208 (530)
T ss_pred             HHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEE
Confidence            45778899999963334578899999999999999999999999999999999999999999999853    48999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEE-EeeCccccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS  131 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  131 (146)
                      |||++++.++||+|++|++|+++ +.|+++++.
T Consensus       209 sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        209 SHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             eCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            99999999999999999999994 778877653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.95  E-value=2.1e-27  Score=172.26  Aligned_cols=78  Identities=32%  Similarity=0.568  Sum_probs=75.0

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++++ .|.|+|++||+++++.++||++++|++|++
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999999999999999999999975 489999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=4.8e-27  Score=178.73  Aligned_cols=95  Identities=29%  Similarity=0.480  Sum_probs=87.0

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      .+.++.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++.+.. |||+++
T Consensus       150 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~  226 (257)
T cd03288         150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLV  226 (257)
T ss_pred             eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEE
Confidence            455678999999999999999999999999999999999999999999999874 3 8999999999999876 999999


Q ss_pred             EECCEEEEeeCccccccC
Q 046954          116 LVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus       116 l~~G~i~~~g~~~~~~~~  133 (146)
                      |++|++++.|+++++...
T Consensus       227 l~~G~i~~~g~~~~~~~~  244 (257)
T cd03288         227 LSRGILVECDTPENLLAQ  244 (257)
T ss_pred             EECCEEEEeCCHHHHHhc
Confidence            999999999998887543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=4.3e-27  Score=173.04  Aligned_cols=90  Identities=27%  Similarity=0.443  Sum_probs=83.0

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh-hcCeEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLL  116 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~-~~d~v~~l  116 (146)
                      ..+.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.++++ .|.|+|++||+++.+.. +||++++|
T Consensus       100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l  178 (200)
T cd03217         100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVL  178 (200)
T ss_pred             hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEE
Confidence            34468999999999999999999999999999999999999999999999875 48999999999999988 79999999


Q ss_pred             ECCEEEEeeCcc
Q 046954          117 VNGEIVEVLKPD  128 (146)
Q Consensus       117 ~~G~i~~~g~~~  128 (146)
                      ++|++++.|+.+
T Consensus       179 ~~G~i~~~~~~~  190 (200)
T cd03217         179 YDGRIVKSGDKE  190 (200)
T ss_pred             ECCEEEEEccHH
Confidence            999999988443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.95  E-value=1.7e-27  Score=173.57  Aligned_cols=103  Identities=32%  Similarity=0.547  Sum_probs=87.0

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.++....+...  ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            57888887533222111  134577889999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      +.+.+.|+++++ .|+|||++||++++
T Consensus       164 ~~~~~~l~~~~~-~~~tili~sH~~~~  189 (190)
T TIGR01166       164 EQMLAILRRLRA-EGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeecccc
Confidence            999999999975 48999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.1e-27  Score=167.18  Aligned_cols=123  Identities=26%  Similarity=0.439  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +..+..|++.+.++....|..|..+||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.++.|.++++
T Consensus       128 R~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi  207 (258)
T COG4107         128 RAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI  207 (258)
T ss_pred             HHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE
Confidence            45577899999998667788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHH
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRF  141 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~  141 (146)
                      +|||+..+.-+++|.++|++|++++.|-++.+. .+.++++.-+
T Consensus       208 VTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLL  251 (258)
T COG4107         208 VTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL  251 (258)
T ss_pred             EechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHH
Confidence            999999999999999999999999999888765 4566776544

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=196.07  Aligned_cols=128  Identities=30%  Similarity=0.388  Sum_probs=109.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+.....+..  ..++++.++++.+++. ++.++++.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus       102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~  180 (648)
T PRK10535        102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG  180 (648)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            4678887643322211  1234577889999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+.+.|+++++ .|.|+|++||+++.+. .||++++|++|++++.|++++..
T Consensus       181 ~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        181 EEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             HHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence            999999999875 4999999999999875 69999999999999999988763

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.95  E-value=8.6e-27  Score=177.48  Aligned_cols=102  Identities=25%  Similarity=0.395  Sum_probs=92.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ..+.++++.+++. +..++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++++ .|+|||++
T Consensus       118 ~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIii  195 (255)
T cd03236         118 GKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVV  195 (255)
T ss_pred             HHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence            4577889999996 467889999999999999999999999999999999999999999999999999975 48999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEe
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      ||+++.+..+||+|++| +|++.+.
T Consensus       196 SHd~~~~~~~ad~i~~l-~~~~~~~  219 (255)
T cd03236         196 EHDLAVLDYLSDYIHCL-YGEPGAY  219 (255)
T ss_pred             ECCHHHHHHhCCEEEEE-CCCCCcc
Confidence            99999999999999999 5666543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=8.2e-27  Score=172.31  Aligned_cols=112  Identities=26%  Similarity=0.306  Sum_probs=95.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+.....+  ...+++.++++.+++. .+.++++++||||||||++||||++.+|+++||||||+|||+.++..
T Consensus        89 tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  165 (207)
T PRK13539         89 TVAENLEFWAAFLG--GEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL  165 (207)
T ss_pred             cHHHHHHHHHHhcC--CcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            57788876433222  1234578899999996 46788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      +.+.|.++++ .|.|+|++||+++++..  |+++-++.
T Consensus       166 l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        166 FAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             HHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence            9999999875 49999999999999876  99888744

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.94  E-value=9.3e-27  Score=186.97  Aligned_cols=124  Identities=31%  Similarity=0.508  Sum_probs=109.5

Q ss_pred             ChHHHhhcCcccc-C----CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLR-G----KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||.|||.++.... .    .....+++.++.+++|++- ..+.++.+||-|+||||.|.+||.++|++|||||||+-|.|
T Consensus        95 TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP  173 (501)
T COG3845          95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP  173 (501)
T ss_pred             chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            7899999986431 1    1123467888999999974 46889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      .....+++.++++++ .|+|||+|||.++++.++|||+-+|++|+++...+
T Consensus       174 ~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         174 QEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999986 59999999999999999999999999999876655

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.94  E-value=1.3e-26  Score=208.84  Aligned_cols=99  Identities=28%  Similarity=0.502  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCChhh-----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954           19 ENEVYKLLSLADLDSSF-----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK   87 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~   87 (146)
                      ++++.++++.+++. ++           .+..+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus       546 ~~~v~~a~~~~~l~-~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~  624 (1466)
T PTZ00265        546 DSEVVDVSKKVLIH-DFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN  624 (1466)
T ss_pred             HHHHHHHHHHhCcH-HHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            45677788888774 22           2356789999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954           88 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus        88 l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G  119 (146)
                      +.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus       625 ~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        625 LKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             HhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            8654589999999999988 579999999986

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=4.4e-27  Score=170.41  Aligned_cols=130  Identities=25%  Similarity=0.374  Sum_probs=115.3

Q ss_pred             ChHHHhhcCccccC----------CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRG----------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++....+          ....+.+++++|...||. +..++..+.||.||||++.|++.++++|++|++|||+
T Consensus        97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv  175 (249)
T COG4674          97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV  175 (249)
T ss_pred             cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence            68999988643211          112245799999999996 5788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      +|+......+..++|+.++.  +++|++|.|||.++..++++|-+|++|.+..+|+.+++.++
T Consensus       176 AGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d  236 (249)
T COG4674         176 AGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND  236 (249)
T ss_pred             CCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence            99999999999999999975  79999999999999999999999999999999999998654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.2e-27  Score=197.21  Aligned_cols=108  Identities=25%  Similarity=0.361  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      ..++..+++.+++.....++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|.++  . | |||+
T Consensus       407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-g-tvi~  482 (638)
T PRK10636        407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-G-ALVV  482 (638)
T ss_pred             HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C-eEEE
Confidence            3467789999999644678899999999999999999999999999999999999999999999999886  2 4 9999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      ||||++++..+||+|++|++|+++ +.|+.+++
T Consensus       483 vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        483 VSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             EeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            999999999999999999999997 67777665

>PTZ00243 ABC transporter; Provisional

Probab=99.94  E-value=1.5e-26  Score=209.53  Aligned_cols=125  Identities=25%  Similarity=0.409  Sum_probs=105.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcC-CCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANE-PEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~-p~llllDEP   69 (146)
                      |+++||..+.     ..+++++.++++.+++.+..          ....+.+||||||||++|||||+++ |++||||||
T Consensus      1399 TIreNIdp~~-----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243       1399 TVRQNVDPFL-----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred             cHHHHhCccc-----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            7889996531     23467788889888874311          1123468999999999999999995 899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ||+||+.+.+.+.+.|.+..  .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++...
T Consensus      1474 TSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243       1474 TANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred             CccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999864  38999999999998865 899999999999999999998653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.94  E-value=1.8e-26  Score=169.87  Aligned_cols=83  Identities=31%  Similarity=0.543  Sum_probs=75.1

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      .++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+. +.++.++ |.|||++||+++.+.. ||+++
T Consensus       121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~  198 (204)
T cd03250         121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIV  198 (204)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEE
Confidence            4556789999999999999999999999999999999999999999984 5666543 8999999999999987 99999


Q ss_pred             EEECCE
Q 046954          115 LLVNGE  120 (146)
Q Consensus       115 ~l~~G~  120 (146)
                      +|++|+
T Consensus       199 ~l~~G~  204 (204)
T cd03250         199 VLDNGR  204 (204)
T ss_pred             EEeCCC
Confidence            999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=1e-26  Score=170.03  Aligned_cols=83  Identities=36%  Similarity=0.459  Sum_probs=78.1

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC-C
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-G  119 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~-G  119 (146)
                      +|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++++ .|.|+|++||+++ .+..+||++++|++ |
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g  186 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG  186 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence            8999999999999999999999999999999999999999999999875 4899999999998 47889999999999 9


Q ss_pred             EEEEee
Q 046954          120 EIVEVL  125 (146)
Q Consensus       120 ~i~~~g  125 (146)
                      ++++.|
T Consensus       187 ~i~~~g  192 (192)
T cd03232         187 KTVYFG  192 (192)
T ss_pred             eEEeCC
Confidence            998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.94  E-value=1.5e-26  Score=169.41  Aligned_cols=83  Identities=34%  Similarity=0.505  Sum_probs=78.1

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCE
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGE  120 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~  120 (146)
                      +|||||+||++|||||+.+|+++||||||++||+.+++.+.+.|.++.+ .|+|+|++||+++ ++..+||++++|++|+
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~  189 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR  189 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence            8999999999999999999999999999999999999999999999875 4999999999996 7889999999999999


Q ss_pred             EEEee
Q 046954          121 IVEVL  125 (146)
Q Consensus       121 i~~~g  125 (146)
                      +++.|
T Consensus       190 i~~~~  194 (194)
T cd03213         190 VIYFG  194 (194)
T ss_pred             EEecC
Confidence            97653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.94  E-value=2.4e-26  Score=208.21  Aligned_cols=126  Identities=29%  Similarity=0.387  Sum_probs=104.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+....     ...++++.++++.+++.+.          .....+..||||||||++|||||+++|++|||||||
T Consensus      1375 TIr~NLdp~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT 1449 (1522)
T TIGR00957      1375 SLRMNLDPFS-----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449 (1522)
T ss_pred             cHHHHcCccc-----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            6888986321     2346677788887776321          112345679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+...+.+.|++..  .++|+|+|+|+++.+.. ||||++|++|+|++.|+++++....
T Consensus      1450 SalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957      1450 AAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred             ccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence            9999999999999999874  38999999999999876 8999999999999999999986543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.94  E-value=1.5e-26  Score=208.25  Aligned_cols=126  Identities=24%  Similarity=0.319  Sum_probs=107.4

Q ss_pred             ChHHHhhcCccccCC---C--ccHHHHHHHHHHcCCChhhhcCCc-----CCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLSKTG-----AEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.+++..+..   +  ...+.++++++.+++. +..+..+     ..|||||||||+||++|+.+|++|+|||||
T Consensus       969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140        969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred             cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            789999987543311   1  1123578899999996 5677765     589999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC-CEEEEeeCcc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVEVLKPD  128 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~  128 (146)
                      +|||+.++..+++.|+++++ .|+|||+++|+++ .+.+++|++++|++ |++++.|++.
T Consensus      1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            99999999999999999976 4999999999998 57889999999996 8999999864

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.94  E-value=1.3e-26  Score=166.84  Aligned_cols=78  Identities=47%  Similarity=0.747  Sum_probs=75.1

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      |||||+||++|||||+.+|+++||||||++||+.++..+.+.|.+++++ |.|+|++||+++++..+||++++|++|++
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            9999999999999999999999999999999999999999999999765 89999999999999999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.94  E-value=3.2e-26  Score=170.11  Aligned_cols=113  Identities=27%  Similarity=0.474  Sum_probs=88.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+.++...     ...+..++++.+++...          ..+.++..|||||||||+||||++.+|+++||||||
T Consensus        94 t~~~nl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  168 (218)
T cd03290          94 TVEENITFGSPF-----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPF  168 (218)
T ss_pred             cHHHHHhhcCcC-----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence            567888765321     12233445555555311          124578899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHH--HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           71 SALDPISTQNIED--VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        71 ~~LD~~~~~~~~~--~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ++||+.++..+.+  ++..++ +.|.|+|++||+++.+. .||++++|++|+
T Consensus       169 ~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         169 SALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             cccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            9999999999998  566664 45899999999999885 699999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.94  E-value=3.3e-26  Score=193.17  Aligned_cols=126  Identities=25%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.+|+.++...........++..+++.+++..+..++++++|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus       399 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~  478 (635)
T PRK11147        399 TVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLEL  478 (635)
T ss_pred             CHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            57888876532111111134577889999986446788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEE-eeCcccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE-VLKPDLL  130 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~  130 (146)
                      +.+.+.++    +.|||+||||.+++..+||++++|+ +|++.. .|+.+++
T Consensus       479 l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        479 LEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             HHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            99998775    4599999999999999999999998 899864 4544443

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=175.10  Aligned_cols=110  Identities=31%  Similarity=0.446  Sum_probs=102.6

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ++...+.+.++++ .+.+.+++.||-|||.|+.||.+|+++|++|+|||||-|||..++..+.+.++++++++++||+++
T Consensus       135 ~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllT  213 (325)
T COG4586         135 ERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT  213 (325)
T ss_pred             HHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEE
Confidence            4556677888985 578889999999999999999999999999999999999999999999999999998899999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ||+++.+..+||||++|+.|+++.+|+.+++
T Consensus       214 TH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l  244 (325)
T COG4586         214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQL  244 (325)
T ss_pred             ecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence            9999999999999999999999999887665

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.94  E-value=2e-26  Score=166.60  Aligned_cols=83  Identities=35%  Similarity=0.590  Sum_probs=77.7

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G  119 (146)
                      +.+|||||+||++||||++.+|+++||||||++||+.+++.+.+.|.++. + +.|+|++||+++++. .||++++|++|
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g  172 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENG  172 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECC
Confidence            67899999999999999999999999999999999999999999999984 3 899999999999986 69999999999


Q ss_pred             EEEEee
Q 046954          120 EIVEVL  125 (146)
Q Consensus       120 ~i~~~g  125 (146)
                      ++++.|
T Consensus       173 ~i~~~~  178 (178)
T cd03247         173 KIIMQG  178 (178)
T ss_pred             EEEecC
Confidence            998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.94  E-value=1.5e-26  Score=166.62  Aligned_cols=77  Identities=35%  Similarity=0.585  Sum_probs=73.1

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      |||||+||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|+|+|++||+++++ .+||++++|++|++
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~v~~l~~G~i  173 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETL-ASADRILVLEDGRV  173 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence            999999999999999999999999999999999999999999999975 499999999999988 57999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PLN03073 ABC transporter F family; Provisional

Probab=99.94  E-value=2.8e-26  Score=195.36  Aligned_cols=107  Identities=26%  Similarity=0.325  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++..+++.+++.....++++.+|||||||||+||||++.+|++|||||||++||+.++..+.+.+.++   .| |||+
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIi  679 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLM  679 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEE
Confidence            4567889999999644678899999999999999999999999999999999999999999998887664   24 9999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEE-EeeCccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDL  129 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~  129 (146)
                      ||||++++..+||++++|++|+++ ..|+.++
T Consensus       680 vSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~  711 (718)
T PLN03073        680 VSHDEHLISGSVDELWVVSEGKVTPFHGTFHD  711 (718)
T ss_pred             EECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            999999999999999999999997 5666544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.94  E-value=1.7e-26  Score=207.65  Aligned_cols=127  Identities=27%  Similarity=0.394  Sum_probs=108.2

Q ss_pred             ChHHHhhcCccccCC---C--ccHHHHHHHHHHcCCChhhhcCCcC----CCChhHHHHHHHHHHHhcCCC-EEEeeCCC
Q 046954            1 TVADNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLSKTGA----EISVGQAQRVALARTLANEPE-VLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgG~~qrv~ia~al~~~p~-llllDEPt   70 (146)
                      ||+||+.+.+..+..   +  ...++++++++.+++. +..++.++    .||||||||++||++|+.+|+ +|+|||||
T Consensus       852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT  930 (1394)
T TIGR00956       852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT  930 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence            789999987544321   1  1134578899999995 56787776    799999999999999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHhhcCeEEEEECC-EEEEeeCccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADVVCLLVNG-EIVEVLKPDL  129 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-~~~~~d~v~~l~~G-~i~~~g~~~~  129 (146)
                      +|||+.++..+.+.|+++++ .|+|||+++|+++. +.+.+|++++|++| ++++.|++.+
T Consensus       931 sgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~  990 (1394)
T TIGR00956       931 SGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE  990 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence            99999999999999999975 59999999999986 45789999999997 9999998753

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.94  E-value=2.6e-26  Score=166.00  Aligned_cols=78  Identities=51%  Similarity=0.827  Sum_probs=74.6

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|+|++||+++++..+||++++|++|+
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999999999999999999999999999976447999999999999999999999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=2.5e-26  Score=168.49  Aligned_cols=109  Identities=23%  Similarity=0.353  Sum_probs=90.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+......  ....++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus        89 tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  165 (198)
T TIGR01189        89 SALENLHFWAAIHG--GAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVAL  165 (198)
T ss_pred             cHHHHHHHHHHHcC--CcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence            57788876533222  1234577889999995 57889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      +.+.|.++++ .|.|+|++||+...+  .++|++.
T Consensus       166 l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       166 LAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             HHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence            9999999865 489999999998554  3577654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=193.60  Aligned_cols=108  Identities=23%  Similarity=0.274  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      ..++..+++.+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.+...+.+.|.++    +.|||+
T Consensus       126 ~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvii  201 (638)
T PRK10636        126 RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLIL  201 (638)
T ss_pred             HHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEE
Confidence            3567889999999534678899999999999999999999999999999999999999999999998764    569999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      ||||++++..+||+|++|++|+++ ..|+.+.+
T Consensus       202 vsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~  234 (638)
T PRK10636        202 ISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF  234 (638)
T ss_pred             EeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence            999999999999999999999996 45665543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=3.3e-26  Score=190.58  Aligned_cols=105  Identities=27%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +++..+++.+|++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++    +.|||+|
T Consensus       143 ~~~~~~l~~~gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviii  216 (556)
T PRK11819        143 SQLEIAMDALRCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAV  216 (556)
T ss_pred             HHHHHHHHhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEE
Confidence            4567788999995 3 68899999999999999999999999999999999999999999999999876    2499999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      |||++++..+||+|++|++|+++ ..|+.+++
T Consensus       217 sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        217 THDRYFLDNVAGWILELDRGRGIPWEGNYSSW  248 (556)
T ss_pred             eCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence            99999999999999999999986 67777654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.94  E-value=5.9e-26  Score=205.43  Aligned_cols=124  Identities=27%  Similarity=0.458  Sum_probs=100.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.|+..     .+++++.++++..++..++          ....+.+||||||||++||||+.++|+++||||||
T Consensus       694 TIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt  768 (1495)
T PLN03232        694 TVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL  768 (1495)
T ss_pred             cHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            78999999742     2455666777766663221          22345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+||+.+.+.+.+. +....  .|+|+|+|||+++.+ ..||+|++|++|++++.|+.+++..
T Consensus       769 SaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        769 SALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             cccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhH-HhCCEEEEEeCCEEEEecCHHHHHh
Confidence            99999999988765 44443  489999999999876 5699999999999999999887753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=3.5e-26  Score=165.54  Aligned_cols=87  Identities=25%  Similarity=0.338  Sum_probs=78.3

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      ||||||||++||||++.+|+++||||||++||+.++..+.+.+.+++++.+.|+|++||+++++..+||++++|+++-.+
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~  151 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV  151 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence            99999999999999999999999999999999999999999999987543489999999999999999999999988655


Q ss_pred             Ee--eCccc
Q 046954          123 EV--LKPDL  129 (146)
Q Consensus       123 ~~--g~~~~  129 (146)
                      .+  |.|..
T Consensus       152 ~~~~~~~~~  160 (177)
T cd03222         152 YGIASQPKG  160 (177)
T ss_pred             ceeccCCcc
Confidence            33  45543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.94  E-value=3.1e-26  Score=206.00  Aligned_cols=129  Identities=15%  Similarity=0.144  Sum_probs=107.7

Q ss_pred             ChHHHhhcCccccC-------CCcc--HHH-HHHHHHHcCCChhhhcCC-----cCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954            1 TVADNIRYGPQLRG-------KKLT--ENE-VYKLLSLADLDSSFLSKT-----GAEISVGQAQRVALARTLANEPEVLL   65 (146)
Q Consensus         1 tv~eni~~~~~~~~-------~~~~--~~~-~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~lll   65 (146)
                      ||+||+.|++..+.       ....  .++ ++.+++.+||. +..+.+     ++.|||||||||+||++|+.+|++++
T Consensus       154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            78999998754321       1111  122 35578999996 455544     56799999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |||||+|||+.++..+.+.|++++++.|+|+|+++|++ +.+.+++|+|++|++|++++.|+++++
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence            99999999999999999999999875699999999996 689999999999999999999998654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.94  E-value=9.5e-26  Score=203.97  Aligned_cols=124  Identities=23%  Similarity=0.357  Sum_probs=104.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS----------KTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+....     ...++++.++++.+++.+...+          ..+..||||||||++|||||+++|++|||||||
T Consensus      1307 TIR~NLdp~~-----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaT 1381 (1490)
T TIGR01271      1307 TFRKNLDPYE-----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381 (1490)
T ss_pred             CHHHHhCccc-----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            6888986431     2346778889998887432111          123479999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+||+.+...+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.|++.++..
T Consensus      1382 S~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1382 AHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             ccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence            9999999999999999874  38999999999998876 89999999999999999998764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=7e-26  Score=189.61  Aligned_cols=97  Identities=27%  Similarity=0.436  Sum_probs=90.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++.++++.+++. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++ + |.|||+|
T Consensus       191 ~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIiv  267 (590)
T PRK13409        191 GKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVV  267 (590)
T ss_pred             HHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEE
Confidence            4577889999996 57899999999999999999999999999999999999999999999999999996 4 9999999


Q ss_pred             ecCHHHHHhhcCeEEEEECC
Q 046954          100 SHSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G  119 (146)
                      ||+++++..+||+|++|++|
T Consensus       268 sHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        268 EHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             eCCHHHHHHhCCEEEEEeCC
Confidence            99999999999999999874

>PLN03130 ABC transporter C family member; Provisional

Probab=99.93  E-value=1.1e-25  Score=204.39  Aligned_cols=124  Identities=29%  Similarity=0.440  Sum_probs=100.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.|+..     .+++++.++++.+++..++          ....+.+|||||||||+||||++++|+++||||||
T Consensus       694 TIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt  768 (1622)
T PLN03130        694 TVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL  768 (1622)
T ss_pred             CHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            79999999742     2355667777776663221          22345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+||+.+.+.+.+ .+..+.  .|+|+|+|||++..+. .||+|++|++|++++.|+.+++..
T Consensus       769 SALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        769 SALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             cccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence            9999999988865 555553  3899999999998764 599999999999999999888753

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=1.3e-25  Score=191.34  Aligned_cols=107  Identities=29%  Similarity=0.337  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++..++..+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++    +.|||+|
T Consensus       322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv  397 (718)
T PLN03073        322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV  397 (718)
T ss_pred             HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE
Confidence            456677888888645678899999999999999999999999999999999999999999999999775    6799999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      |||.+++..+||+|++|++|++. +.|+.+.+
T Consensus       398 sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~  429 (718)
T PLN03073        398 SHAREFLNTVVTDILHLHGQKLVTYKGDYDTF  429 (718)
T ss_pred             ECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            99999999999999999999996 56666544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=9.8e-26  Score=187.61  Aligned_cols=104  Identities=27%  Similarity=0.287  Sum_probs=92.1

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      ++.++++.+++. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++    +.|||+||
T Consensus       142 ~~~~~l~~~~l~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiis  215 (552)
T TIGR03719       142 KLEIAMDALRCP-P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVT  215 (552)
T ss_pred             HHHHHHhhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEe
Confidence            355667778874 2 57889999999999999999999999999999999999999999999998875    35999999


Q ss_pred             cCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954          101 HSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      ||++++..+||++++|++|+++ ..|+.+++
T Consensus       216 Hd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~  246 (552)
T TIGR03719       216 HDRYFLDNVAGWILELDRGRGIPWEGNYSSW  246 (552)
T ss_pred             CCHHHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence            9999999999999999999975 67777654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-25  Score=182.85  Aligned_cols=129  Identities=25%  Similarity=0.372  Sum_probs=108.0

Q ss_pred             ChHHHhhcCcc-c-c-C--CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954            1 TVADNIRYGPQ-L-R-G--KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~-~-~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L   73 (146)
                      +|.+|+.++.. . . .  ...  ..+.+..+.+.+++...-.+.++.+||||.||||.|||.|+.+|++|||||||.|.
T Consensus       353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI  432 (500)
T COG1129         353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI  432 (500)
T ss_pred             cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence            57889887621 1 1 0  111  12346677888888644456788999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |..++.+++++|.+++++ |++||++|-++.++..+||||++|++|+++.+-+.+++
T Consensus       433 DVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~  488 (500)
T COG1129         433 DVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREEA  488 (500)
T ss_pred             ccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999874 99999999999999999999999999999987766654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.93  E-value=1.2e-25  Score=189.71  Aligned_cols=105  Identities=31%  Similarity=0.426  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      ..++..+++.+|+.   .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++    +.|||+
T Consensus       136 ~~~~~~~l~~lgl~---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvli  208 (635)
T PRK11147        136 ENRINEVLAQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIF  208 (635)
T ss_pred             HHHHHHHHHhCCCC---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEE
Confidence            35678889999984   37889999999999999999999999999999999999999999999999876    359999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEE-eeCcccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVE-VLKPDLL  130 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~  130 (146)
                      ||||.+++..+||+|++|++|+++. .|+.+.+
T Consensus       209 vsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~  241 (635)
T PRK11147        209 ISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY  241 (635)
T ss_pred             EeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence            9999999999999999999999974 5766544

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.93  E-value=3.9e-25  Score=184.14  Aligned_cols=105  Identities=26%  Similarity=0.373  Sum_probs=88.0

Q ss_pred             cHHHHHHHHHHcCCChhhhcCC------cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH-HHHH
Q 046954           18 TENEVYKLLSLADLDSSFLSKT------GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV-KLKK   90 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~------~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~-~l~~   90 (146)
                      .++++.++++.+++.+ +.+..      ...||||||||++||||++.+|+++||||||++||+.+.+.+.+.+. .+. 
T Consensus       441 ~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-  518 (555)
T TIGR01194       441 SLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-  518 (555)
T ss_pred             hHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-
Confidence            3456778899999863 33322      35799999999999999999999999999999999999999998765 443 


Q ss_pred             hcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           91 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        91 ~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ..|+|+|+|||+++.+ +.||+|++|++|++++.-
T Consensus       519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~  552 (555)
T TIGR01194       519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT  552 (555)
T ss_pred             hCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence            3489999999999876 579999999999998653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.93  E-value=4.4e-25  Score=183.46  Aligned_cols=105  Identities=31%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHcCCChhhhcCC-----cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046954           19 ENEVYKLLSLADLDSSFLSKT-----GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG   93 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g   93 (146)
                      ++.+.++++.+++.. ..+..     +.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+..++.|
T Consensus       422 ~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~  500 (547)
T PRK10522        422 PALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG  500 (547)
T ss_pred             HHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            456777888888853 22221     458999999999999999999999999999999999999999999987654458


Q ss_pred             CeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954           94 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus        94 ~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      +|+|+|||+++.+ +.||+|++|++|++++..
T Consensus       501 ~tvi~itH~~~~~-~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        501 KTIFAISHDDHYF-IHADRLLEMRNGQLSELT  531 (547)
T ss_pred             CEEEEEEechHHH-HhCCEEEEEECCEEEEec
Confidence            9999999999765 569999999999998763

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2e-25  Score=166.36  Aligned_cols=106  Identities=29%  Similarity=0.427  Sum_probs=98.1

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVM   98 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~-~g~tvi~   98 (146)
                      +++..+++.+|+. ++.+++..+||.||||||.|||||+.+|++||||||++|||..+++.+.+.|.+++.. .+.++|+
T Consensus       150 ~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~  228 (257)
T COG1119         150 AAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF  228 (257)
T ss_pred             HHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEE
Confidence            4577889999995 6899999999999999999999999999999999999999999999999999998753 2689999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      |||..+++....++++.+++|+++..|.
T Consensus       229 VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         229 VTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             EEcchhhcccccceEEEeeCCceeeccc
Confidence            9999999999999999999999998764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.93  E-value=2.5e-25  Score=159.37  Aligned_cols=76  Identities=36%  Similarity=0.460  Sum_probs=70.6

Q ss_pred             CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      ++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.|.++    +.|+|++||+++.. .+||++++|++
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~  162 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDG  162 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence            46899999999999999999999999999999999999999999999875    58999999999865 68999999987


Q ss_pred             C
Q 046954          119 G  119 (146)
Q Consensus       119 G  119 (146)
                      |
T Consensus       163 ~  163 (166)
T cd03223         163 E  163 (166)
T ss_pred             C
Confidence            6

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=1.6e-25  Score=163.96  Aligned_cols=107  Identities=22%  Similarity=0.389  Sum_probs=90.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+....+.   ..+++..+++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus        86 tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~  161 (195)
T PRK13541         86 TVFENLKFWSEIYN---SAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL  161 (195)
T ss_pred             CHHHHHHHHHHhcc---cHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            57788876533221   234677888999995 56788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV  113 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v  113 (146)
                      +.+.+.+..+ .|.|+|++||+++.+.. +|-+
T Consensus       162 l~~~l~~~~~-~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        162 LNNLIVMKAN-SGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHHHHHHHHh-CCCEEEEEeCCccccch-hhee
Confidence            9999987654 58999999999988865 6654

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.93  E-value=5.4e-25  Score=191.00  Aligned_cols=136  Identities=28%  Similarity=0.402  Sum_probs=111.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~   77 (146)
                      |+.|++.|......    ..+..+.++.+||.....++++.+|||||+||+.||++|+.+|   +++||||||+|||+..
T Consensus       793 tv~E~l~~f~~~~~----i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~  868 (943)
T PRK00349        793 TVEEALEFFEAIPK----IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED  868 (943)
T ss_pred             cHHHHHHHHHhchh----hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH
Confidence            45556555432211    1234567889999632468889999999999999999999999   9999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +..+.+.|.++.+ .|.|||+|||+++.+. .||+|+.|      ++|++++.|+++++.....+++..|+
T Consensus       869 ~~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l  937 (943)
T PRK00349        869 IRKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYL  937 (943)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHH
Confidence            9999999999975 5999999999999885 79999999      79999999999998654446666665

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=2.6e-25  Score=163.42  Aligned_cols=108  Identities=26%  Similarity=0.345  Sum_probs=90.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.+|+.++....   .....+.++++.+++. +..++++.+|||||+||++||||++.+|+++||||||+|||+.++..
T Consensus        90 tv~~~~~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~  165 (200)
T PRK13540         90 TLRENCLYDIHFS---PGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT  165 (200)
T ss_pred             CHHHHHHHHHhcC---cchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence            5788887753211   1234678899999996 46788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      +.+.|+++++ .|.|+|++||+...+.. ||.-+
T Consensus       166 l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        166 IITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence            9999999865 48999999999888755 77643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.93  E-value=6e-25  Score=198.79  Aligned_cols=93  Identities=28%  Similarity=0.418  Sum_probs=84.1

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      ..++..|||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..+.  .|+|+|++||+++.+.. ||+|++
T Consensus       543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~  619 (1490)
T TIGR01271       543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILL  619 (1490)
T ss_pred             cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEE
Confidence            456789999999999999999999999999999999999999999985 66664  38999999999998864 999999


Q ss_pred             EECCEEEEeeCcccccc
Q 046954          116 LVNGEIVEVLKPDLLSE  132 (146)
Q Consensus       116 l~~G~i~~~g~~~~~~~  132 (146)
                      |++|++++.|+.+++..
T Consensus       620 l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       620 LHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             EECCEEEEEcCHHHHHh
Confidence            99999999999888754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=8.3e-25  Score=160.60  Aligned_cols=129  Identities=26%  Similarity=0.362  Sum_probs=106.2

Q ss_pred             ChHHHhhcCcccc---CCC-----ccHHHHHHHHHHcCCC-hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954            1 TVADNIRYGPQLR---GKK-----LTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS   71 (146)
Q Consensus         1 tv~eni~~~~~~~---~~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~   71 (146)
                      |+.||+.++....   +..     ...+...+.+..+++. +...+.+.+-|||||||-++++.|.++.|++|+|||-|+
T Consensus        98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA  177 (263)
T COG1101          98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA  177 (263)
T ss_pred             cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence            7899998864321   111     1122344556665543 346677889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954           72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL  129 (146)
Q Consensus        72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  129 (146)
                      +|||.....+++.=.++..+.+.|.+||||+|+.+..|.+|.++|++|+|+.+.+.++
T Consensus       178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~  235 (263)
T COG1101         178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE  235 (263)
T ss_pred             cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence            9999999999999999988889999999999999999999999999999998766543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.92  E-value=3.1e-25  Score=159.42  Aligned_cols=75  Identities=43%  Similarity=0.682  Sum_probs=71.6

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++. + ++|+|++||+++++.. ||++++|++|+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999985 3 7999999999999987 99999999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.92  E-value=8.2e-25  Score=198.30  Aligned_cols=126  Identities=27%  Similarity=0.426  Sum_probs=98.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++...     ++++..++++..++..          ...+.++.+||||||||++||||++.+|+++||||||
T Consensus       714 Ti~eNI~~g~~~-----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~  788 (1522)
T TIGR00957       714 SLRENILFGKAL-----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL  788 (1522)
T ss_pred             cHHHHhhcCCcc-----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            789999987431     1222333333222211          1234667899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-HhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~-~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ++||+.+.+.+.+.+.+.. ...|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus       789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ  850 (1522)
T ss_pred             cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence            9999999999999987531 1237999999999998865 99999999999999999887643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.92  E-value=2.2e-25  Score=200.74  Aligned_cols=108  Identities=24%  Similarity=0.254  Sum_probs=97.0

Q ss_pred             HHHHHHHcCCChhhh-----cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           22 VYKLLSLADLDSSFL-----SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      ++.+++.+||+ +..     +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..|+|+
T Consensus       312 ~~~~L~~lGL~-~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv  390 (1470)
T PLN03140        312 TDYTLKILGLD-ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV  390 (1470)
T ss_pred             HHHHHHHcCCc-cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence            35678889995 333     556789999999999999999999999999999999999999999999999987668999


Q ss_pred             EEEecCH-HHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           97 VMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        97 i~itH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |+++|++ .++..++|+|++|++|++++.|+++++
T Consensus       391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~  425 (1470)
T PLN03140        391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHI  425 (1470)
T ss_pred             EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHH
Confidence            9999996 588899999999999999999998764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.92  E-value=7.6e-25  Score=181.23  Aligned_cols=109  Identities=37%  Similarity=0.566  Sum_probs=89.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++..    ...++++.++++..++.+.          .....+.+||||||||++||||++++|+++||||||
T Consensus       411 ti~~Ni~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t  486 (529)
T TIGR02857       411 TIAENIRLARP----DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT  486 (529)
T ss_pred             CHHHHHhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            68999988632    1245667777777776421          122345789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ++||+.+.+.+.+.+.++.  .++|+|+|||+++.+. .||+|++|
T Consensus       487 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       487 AHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             cccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence            9999999999999999985  3899999999998875 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=2.3e-25  Score=187.09  Aligned_cols=128  Identities=30%  Similarity=0.450  Sum_probs=113.1

Q ss_pred             ChHHHhhcCccccCC-----CccHHHHHHHHHHcCCChhhhcCCcC-----CCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLSKTGA-----EISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+|++.|.+..+-.     ...+++++++++.+|+. ...|..++     .+||||||||+||.-|+++|.+|+|||||
T Consensus       120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT  198 (613)
T KOG0061|consen  120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT  198 (613)
T ss_pred             cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence            799999998765432     12346789999999996 56777665     59999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +|||..+..++.+.|++++++ |+|||++-|++. .+.++.|++++|.+|++++.|++.++
T Consensus       199 SGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~  258 (613)
T KOG0061|consen  199 SGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL  258 (613)
T ss_pred             CCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence            999999999999999999987 999999999986 68899999999999999999998754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.92  E-value=7.7e-25  Score=153.61  Aligned_cols=77  Identities=35%  Similarity=0.513  Sum_probs=72.4

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G  119 (146)
                      ..+||+||+||++|||||+.+|+++||||||++||+.++..+.+.++++    +.|+|++||+++++..+||++++|++|
T Consensus        68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g  143 (144)
T cd03221          68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDG  143 (144)
T ss_pred             EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence            3459999999999999999999999999999999999999999999876    469999999999999999999999998


Q ss_pred             E
Q 046954          120 E  120 (146)
Q Consensus       120 ~  120 (146)
                      +
T Consensus       144 ~  144 (144)
T cd03221         144 K  144 (144)
T ss_pred             C
Confidence            5

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=1.8e-24  Score=155.85  Aligned_cols=124  Identities=26%  Similarity=0.435  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.+.++++|+-.+..+-++..||.||||||++||||+.+|+++|.||..++||..-+.++.+++.++.++.|.+.|+
T Consensus       126 ~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY  205 (267)
T COG4167         126 RKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY  205 (267)
T ss_pred             HHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence            35688889999997778899999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      |+.++..+..++|.|+||++|++++.|++.++. .+.++.++++.
T Consensus       206 V~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRli  250 (267)
T COG4167         206 VTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLI  250 (267)
T ss_pred             EechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHH
Confidence            999999999999999999999999999998864 56667666554

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.92  E-value=7.4e-25  Score=190.37  Aligned_cols=129  Identities=29%  Similarity=0.524  Sum_probs=116.8

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |.+|++.+.++.++.+.  -.+.++..++.+++. +..+++++.+|||+|+|+++|.|++.+|++++|||||+|+||.++
T Consensus       656 T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~ar  734 (885)
T KOG0059|consen  656 TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKAR  734 (885)
T ss_pred             cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHH
Confidence            67899988888777542  234588899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+++++.++++ .|+++|++||.|++++.+|||+.+|.+|++...|++.++.
T Consensus       735 r~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  735 RHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence            999999999976 4679999999999999999999999999999999998764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.92  E-value=9.9e-25  Score=189.37  Aligned_cols=105  Identities=30%  Similarity=0.460  Sum_probs=95.9

Q ss_pred             HHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           24 KLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        24 ~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      +.++.+||. ++ .++++.+|||||+|||+||++|+.+|  +++||||||+|||+.....+.++|+++++ .|.|||+|+
T Consensus       471 ~~L~~vGL~-~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVe  548 (943)
T PRK00349        471 KFLVDVGLD-YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVE  548 (943)
T ss_pred             HHhhccccC-CCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence            367888885 34 68999999999999999999999997  99999999999999999999999999975 599999999


Q ss_pred             cCHHHHHhhcCeEEEE------ECCEEEEeeCccccc
Q 046954          101 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLS  131 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~  131 (146)
                      |+++++. .||+|++|      ++|+++..|+++++.
T Consensus       549 H~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        549 HDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             CCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence            9999986 69999999      999999999988764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.92  E-value=2.7e-24  Score=182.15  Aligned_cols=111  Identities=24%  Similarity=0.346  Sum_probs=91.6

Q ss_pred             ChHHHhhcCccccC---CCccHHHHHHHHHHcCCChhhhcCC---------cCCCChhHHHHHHHHHHHhcCCCEEEeeC
Q 046954            1 TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLSKT---------GAEISVGQAQRVALARTLANEPEVLLLDE   68 (146)
Q Consensus         1 tv~eni~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgG~~qrv~ia~al~~~p~llllDE   68 (146)
                      |++||+.++.....   ....++++.++++.+++. ++.+++         +.+||||||||++||||++++|+++||||
T Consensus       530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE  608 (659)
T TIGR00954       530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE  608 (659)
T ss_pred             CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            68899988643211   112355678889999985 445543         37899999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           69 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        69 Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      ||++||+.+...+.+.+++    .|+|+|+|||+++.+ ++||++++|+
T Consensus       609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~  652 (659)
T TIGR00954       609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMD  652 (659)
T ss_pred             CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEe
Confidence            9999999999999988765    389999999999986 6799999996

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.92  E-value=2.4e-24  Score=194.38  Aligned_cols=128  Identities=27%  Similarity=0.388  Sum_probs=107.3

Q ss_pred             ChHHHhhcCcccc---CC--CccHHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHh---cCCCEEEeeCCCC
Q 046954            1 TVADNIRYGPQLR---GK--KLTENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLA---NEPEVLLLDEPTS   71 (146)
Q Consensus         1 tv~eni~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~---~~p~llllDEPt~   71 (146)
                      ||.|++.++..-.   ..  ....+++ ++++.+|+. ++ .++++.+|||||+||++||++|+   .+|+++||||||+
T Consensus       764 tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs  841 (1809)
T PRK00635        764 NIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD-YLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT  841 (1809)
T ss_pred             CHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc-chhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence            5778887764311   11  1112334 578889995 44 68899999999999999999998   6999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE------CCEEEEeeCcccccc
Q 046954           72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE  132 (146)
Q Consensus        72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~  132 (146)
                      |||+.....+.+.|.++++ .|.|||+|||+++.+ ++||++++|.      +|++++.|+++++..
T Consensus       842 GLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        842 GLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            9999999999999999975 599999999999998 7999999996      789999999988753

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.92  E-value=2.1e-24  Score=187.04  Aligned_cols=104  Identities=30%  Similarity=0.455  Sum_probs=94.5

Q ss_pred             HHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           25 LLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        25 ~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      .+..+||. .+ .++++.+|||||+|||.||++|+.+|  +++||||||+|||+.....+.+.|+++++ .|.|||+|+|
T Consensus       470 ~L~~vgL~-~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeH  547 (924)
T TIGR00630       470 FLIDVGLD-YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEH  547 (924)
T ss_pred             hHhhcccc-ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEC
Confidence            46777885 34 68899999999999999999999986  89999999999999999999999999975 5999999999


Q ss_pred             CHHHHHhhcCeEEEE------ECCEEEEeeCccccc
Q 046954          102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLS  131 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~  131 (146)
                      +++++. +||+|++|      ++|+|++.|+++++.
T Consensus       548 d~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       548 DEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             CHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            999886 89999999      999999999988763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=5.2e-24  Score=193.19  Aligned_cols=123  Identities=27%  Similarity=0.303  Sum_probs=96.7

Q ss_pred             ChHHHhhcCccccCCCccHHHH---------HHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEV---------YKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |++|||.++...     ..++.         .+.++.+  |+. ...++++.+|||||||||+||||++.+|+++|||||
T Consensus       736 Tv~enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP  809 (1560)
T PTZ00243        736 TVRGNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDP  809 (1560)
T ss_pred             cHHHHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence            689999986321     11112         2233333  553 345677899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |++||+...+.+.+.+..... .|+|+|++||+++.+ ..||+|++|++|++++.|+.+++.
T Consensus       810 ~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        810 LSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             cccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence            999999999988775432222 389999999999988 469999999999999999987764

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.91  E-value=7.3e-24  Score=183.70  Aligned_cols=108  Identities=30%  Similarity=0.424  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~---~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      +...+++.+||.....++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+.+.|.++.+ .|.|||
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVI  885 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVV  885 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            345678889996324688899999999999999999997   5999999999999999999999999999975 599999


Q ss_pred             EEecCHHHHHhhcCeEEEE------ECCEEEEeeCcccc
Q 046954           98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLL  130 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~  130 (146)
                      ++||+++.+. .||+++.|      ++|++++.|+++++
T Consensus       886 vi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       886 VIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            9999999885 69999999      79999999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=6.1e-24  Score=188.01  Aligned_cols=125  Identities=30%  Similarity=0.482  Sum_probs=103.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+|||.||..     .++++.++.++.+.|..++          ...++-+||||||||+++|||+.++++++|||.|+
T Consensus       597 TvreNILFG~~-----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl  671 (1381)
T KOG0054|consen  597 TVRENILFGSP-----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL  671 (1381)
T ss_pred             cHHHhhhcCcc-----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence            79999999843     3456667777666664322          23467899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |++|....+.+++-.....- .++|+|++||.+.... .||.|++|++|+|.+.|+.+++..
T Consensus       672 SAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  672 SAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             hhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence            99999999999877554322 3899999999987775 499999999999999999988754

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=1.1e-23  Score=149.24  Aligned_cols=78  Identities=45%  Similarity=0.684  Sum_probs=74.2

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      +||+||+||++|||+++.+|++++|||||++||+.++..+.+.+.++.+. ++|++++||+++++..+||+++++++|+
T Consensus        80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            39999999999999999999999999999999999999999999998754 7999999999999999999999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=169.64  Aligned_cols=91  Identities=32%  Similarity=0.484  Sum_probs=84.3

Q ss_pred             CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      -...||||||||+++||||..+|.+++||||-|+||......+.+.|...++ .|.|+|+|||.++.+ ..+|+|++|++
T Consensus       469 ~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs~L-~~~Dkilvl~~  546 (580)
T COG4618         469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPSAL-ASVDKILVLQD  546 (580)
T ss_pred             CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHHHH-hhcceeeeecC
Confidence            3568999999999999999999999999999999999999999999999975 599999999999866 56999999999


Q ss_pred             CEEEEeeCccccc
Q 046954          119 GEIVEVLKPDLLS  131 (146)
Q Consensus       119 G~i~~~g~~~~~~  131 (146)
                      |++...|+.+++.
T Consensus       547 G~~~~FG~r~eVL  559 (580)
T COG4618         547 GRIAAFGPREEVL  559 (580)
T ss_pred             ChHHhcCCHHHHH
Confidence            9999999998863

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=1.7e-23  Score=156.04  Aligned_cols=129  Identities=26%  Similarity=0.342  Sum_probs=115.5

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |.+||+.+...+.+..  ..++.++++.+..+|. ++.+.|+.++|.||+-|++++.|...+|++||+||-.+-.|+.-+
T Consensus       105 TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~  183 (249)
T COG1134         105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ  183 (249)
T ss_pred             chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence            6789998876665543  2345677888888885 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ++-.+.+.++.+ ++.|+|+||||++.+.++|||+++|++|+++..|+++++.
T Consensus       184 ~K~~~rl~e~~~-~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi  235 (249)
T COG1134         184 EKCLERLNELVE-KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI  235 (249)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence            999999999965 4799999999999999999999999999999999998764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.90  E-value=1.7e-23  Score=155.27  Aligned_cols=93  Identities=23%  Similarity=0.335  Sum_probs=83.2

Q ss_pred             HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954           26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT   95 (146)
Q Consensus        26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t   95 (146)
                      +...++. ++.++++.+||+||+||++||||++.          +|+++||||||++||+.++..+.+.+.++++ .|.|
T Consensus       108 l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~t  185 (213)
T cd03279         108 LPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRM  185 (213)
T ss_pred             hhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCE
Confidence            3444453 57788999999999999999999985          5789999999999999999999999999975 4899


Q ss_pred             EEEEecCHHHHHhhcCeEEEEECCE
Q 046954           96 IVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        96 vi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      +|++||+++.+..+||+++++++|-
T Consensus       186 ii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         186 VGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             EEEEECchHHHHhhCcEEEEEecCC
Confidence            9999999999999999999999984

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.90  E-value=8.5e-24  Score=174.97  Aligned_cols=97  Identities=37%  Similarity=0.574  Sum_probs=79.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++.    ....++++.++++..++.+..          ....+..||||||||++||||++++|+++||||||
T Consensus       423 TI~eNI~~g~----~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T  498 (529)
T TIGR02868       423 TVRDNLRLGR----PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT  498 (529)
T ss_pred             cHHHHHhccC----CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            7899999863    123466788888888774211          11235679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      |+||+.+.+.+.+.+.++.  .++|+|+|||++
T Consensus       499 SaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       499 EHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             ccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            9999999999999999874  389999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.2e-23  Score=165.15  Aligned_cols=92  Identities=40%  Similarity=0.565  Sum_probs=86.1

Q ss_pred             CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      .+-.|||||||||+|||+++.+|++++|||.||+||..+.+.+...|++..+  |+|.++|.|.++.+.. ||.|++|++
T Consensus       396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~-adeiivl~~  472 (497)
T COG5265         396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIID-ADEIIVLDN  472 (497)
T ss_pred             heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccC-CceEEEeeC
Confidence            3457999999999999999999999999999999999999999999999863  9999999999999987 999999999


Q ss_pred             CEEEEeeCccccccC
Q 046954          119 GEIVEVLKPDLLSEA  133 (146)
Q Consensus       119 G~i~~~g~~~~~~~~  133 (146)
                      |+|++.|+.+++...
T Consensus       473 g~i~erg~h~~ll~~  487 (497)
T COG5265         473 GRIVERGTHEELLAA  487 (497)
T ss_pred             CEEEecCcHHHHHHc
Confidence            999999999987654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.90  E-value=4.3e-23  Score=186.38  Aligned_cols=104  Identities=29%  Similarity=0.411  Sum_probs=93.5

Q ss_pred             HHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           25 LLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        25 ~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      .+..+|+. ++ .++++.+|||||+|||+||+||+.+|  +++||||||+|||+..+..+.++|+++++ .|.|||+|||
T Consensus       459 ~L~~vGL~-~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeH  536 (1809)
T PRK00635        459 ILIDLGLP-YLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEH  536 (1809)
T ss_pred             HHHhcccc-CCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence            45667885 34 58899999999999999999999999  89999999999999999999999999975 4999999999


Q ss_pred             CHHHHHhhcCeEEEEE------CCEEEEeeCccccc
Q 046954          102 SIKQIQRIADVVCLLV------NGEIVEVLKPDLLS  131 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~  131 (146)
                      |++ +.++||+|++|.      +|++++.|+++++.
T Consensus       537 d~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil  571 (1809)
T PRK00635        537 DEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL  571 (1809)
T ss_pred             cHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence            998 568999999996      78999999988764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.89  E-value=5.2e-23  Score=169.79  Aligned_cols=105  Identities=31%  Similarity=0.371  Sum_probs=92.4

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .++..++.-+|++. . +++.++||||||.||+||+||+.+|++|||||||++||..+...+.+.|+++   .| |+|+|
T Consensus       133 ~~~~~~L~gLg~~~-~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV  206 (530)
T COG0488         133 ARAEEALLGLGFPD-E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV  206 (530)
T ss_pred             HHHHHHHhcCCCCc-c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE
Confidence            45667778888863 3 8899999999999999999999999999999999999999999999999875   27 99999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      |||-+++-++|++|+.++.|++. +.|.-+.+
T Consensus       207 SHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~  238 (530)
T COG0488         207 SHDRYFLDNVATHILELDRGKLTPYKGNYSSY  238 (530)
T ss_pred             eCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence            99999999999999999999875 45555443

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.89  E-value=1.5e-22  Score=148.80  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=79.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT   95 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t   95 (146)
                      +++.++++.   . +..++++.+||||||||++||++++    .+|+++||||||++||+..+..+.+.|+++++  +.|
T Consensus        95 ~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~t  168 (197)
T cd03278          95 GDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQ  168 (197)
T ss_pred             hhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCE
Confidence            456667766   2 3567889999999999999999997    46699999999999999999999999999853  789


Q ss_pred             EEEEecCHHHHHhhcCeEEEEEC
Q 046954           96 IVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        96 vi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      ||++||+++.+ .+||+++.+..
T Consensus       169 iIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         169 FIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             EEEEECCHHHH-hhcceEEEEEe
Confidence            99999999876 58999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.88  E-value=5.2e-23  Score=166.01  Aligned_cols=92  Identities=38%  Similarity=0.579  Sum_probs=86.3

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      .++-.|||||||||+|||+++..|.+++|||.||+||..+.+.+...+.+++.  |+|.|+|.|.++.+.. ||.|++++
T Consensus       670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~  746 (790)
T KOG0056|consen  670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVIS  746 (790)
T ss_pred             hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEe
Confidence            34568999999999999999999999999999999999999999999999985  8999999999999976 99999999


Q ss_pred             CCEEEEeeCcccccc
Q 046954          118 NGEIVEVLKPDLLSE  132 (146)
Q Consensus       118 ~G~i~~~g~~~~~~~  132 (146)
                      +|+|++.|..+++..
T Consensus       747 ~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  747 NGRIVERGRHEELLK  761 (790)
T ss_pred             CCeEeecCcHHHHHh
Confidence            999999999998754

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=1.7e-22  Score=148.66  Aligned_cols=96  Identities=20%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cC
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HG   93 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g   93 (146)
                      ..+.++++.   . +..++++.+||+|||||++||+|+    +.+|+++||||||+|||+..+..+.+.|.++.++  .+
T Consensus        91 ~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~  166 (198)
T cd03276          91 DMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR  166 (198)
T ss_pred             HHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence            345566665   2 456888999999999999999999    5899999999999999999999999999998654  24


Q ss_pred             CeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           94 MTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        94 ~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      .+||++||+++.+..+ |+|.+|+.|+
T Consensus       167 ~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         167 QFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             EEEEEECCcccccccc-cceeEEEecC
Confidence            6899999999999886 9999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.3e-21  Score=144.88  Aligned_cols=108  Identities=27%  Similarity=0.420  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      ..++.+.++.++++..+++|++. .+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.+++. .|.+++
T Consensus       120 ~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~l  198 (251)
T COG0396         120 IKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVL  198 (251)
T ss_pred             HHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEE
Confidence            45677889999998778999987 6999999999999999999999999999999999999999999999975 599999


Q ss_pred             EEecCHHHHHhhc--CeEEEEECCEEEEeeCcc
Q 046954           98 MVSHSIKQIQRIA--DVVCLLVNGEIVEVLKPD  128 (146)
Q Consensus        98 ~itH~~~~~~~~~--d~v~~l~~G~i~~~g~~~  128 (146)
                      +|||.-..+ .+.  |+|.+|-+|+|+..|.++
T Consensus       199 iITHy~rll-~~i~pD~vhvl~~GrIv~sG~~e  230 (251)
T COG0396         199 IITHYQRLL-DYIKPDKVHVLYDGRIVKSGDPE  230 (251)
T ss_pred             EEecHHHHH-hhcCCCEEEEEECCEEEecCCHH
Confidence            999996544 555  999999999999999983

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.87  E-value=1.3e-21  Score=148.47  Aligned_cols=97  Identities=29%  Similarity=0.318  Sum_probs=83.8

Q ss_pred             cHHHHHHHHHHcCCCh-------------------hhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCC
Q 046954           18 TENEVYKLLSLADLDS-------------------SFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALD   74 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD   74 (146)
                      ..+++.++++.+++..                   +..+.++.+||+|||||++||+||+    .+|+++|+||||++||
T Consensus       123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld  202 (251)
T cd03273         123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD  202 (251)
T ss_pred             eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence            3467888999999851                   3456789999999999999999998    5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      +..+..+.+.|+++. + |.++|+|||+ .++.+.||+++-+.
T Consensus       203 ~~~~~~~~~~l~~~~-~-g~~ii~iSH~-~~~~~~~d~v~~~~  242 (251)
T cd03273         203 LSHTQNIGRMIKTHF-K-GSQFIVVSLK-EGMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHHHHHc-C-CCEEEEEECC-HHHHHhCCEEEEEE
Confidence            999999999999985 3 8999999999 45666799998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=5.6e-21  Score=143.91  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=70.5

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           36 LSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      .+.++.+||||||||++||||++.    +|+++|+||||++||+.+++.+.+.|.++++  +.++|++||+. ++.++||
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~-~~~~~~d  228 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP-ELLEVAD  228 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHhhCC
Confidence            356788999999999999999973    5899999999999999999999999999853  78899999986 5678999


Q ss_pred             eEEEEE
Q 046954          112 VVCLLV  117 (146)
Q Consensus       112 ~v~~l~  117 (146)
                      ++++|.
T Consensus       229 ~i~~l~  234 (243)
T cd03272         229 KFYGVK  234 (243)
T ss_pred             EEEEEE
Confidence            999885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.6e-21  Score=140.42  Aligned_cols=103  Identities=23%  Similarity=0.373  Sum_probs=91.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |++||+.|...+++. .....+.++++.+||. .+.|.++++||.|||+||+|||-+++.++++||||||++||..+...
T Consensus        91 Ta~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~  168 (209)
T COG4133          91 TALENLHFWQRFHGS-GNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL  168 (209)
T ss_pred             hHHHHHHHHHHHhCC-CchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHH
Confidence            789999998766553 2356688899999996 68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~  106 (146)
                      +-.++..-+. .|-.||.+||+.-.+
T Consensus       169 l~~l~~~H~~-~GGiVllttHq~l~~  193 (209)
T COG4133         169 LTALMAAHAA-QGGIVLLTTHQPLPI  193 (209)
T ss_pred             HHHHHHHHhc-CCCEEEEecCCccCC
Confidence            9999999876 488999999997554

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.86  E-value=4.1e-21  Score=158.62  Aligned_cols=106  Identities=30%  Similarity=0.382  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +..+...|..+++..+...+++..||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.++    .-|||+
T Consensus       416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~  491 (530)
T COG0488         416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLL  491 (530)
T ss_pred             HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEE
Confidence            5678899999999866678899999999999999999999999999999999999999999999999876    349999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEe-eCccc
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEV-LKPDL  129 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~  129 (146)
                      ||||..++.++|++++.+++ ++... |+.++
T Consensus       492 VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~  522 (530)
T COG0488         492 VSHDRYFLDRVATRIWLVED-KVEEFEGGYED  522 (530)
T ss_pred             EeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence            99999999999999999998 55443 44443

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=4.3e-21  Score=145.38  Aligned_cols=98  Identities=18%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHcCCCh-------------hh--------hcCCcCCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCC
Q 046954           19 ENEVYKLLSLADLDS-------------SF--------LSKTGAEISVGQAQRVALARTLANE----PEVLLLDEPTSAL   73 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~-------------~~--------~~~~~~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~L   73 (146)
                      ...+.++++.+|+..             .+        .++++.+||+|||||++||++++.+    |+++|+||||++|
T Consensus       111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L  190 (247)
T cd03275         111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL  190 (247)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence            445677888888731             11        1234489999999999999999875    8999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      |+..+..+.+.|.++++ .|.++|+|||+.+. ..+||++++|..
T Consensus       191 D~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~-~~~~d~i~~~~~  233 (247)
T cd03275         191 DNTNVGKVASYIREQAG-PNFQFIVISLKEEF-FSKADALVGVYR  233 (247)
T ss_pred             CHHHHHHHHHHHHHhcc-CCcEEEEEECCHHH-HhhCCeEEEEEe
Confidence            99999999999999975 48999999999765 478999988864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.86  E-value=2.8e-21  Score=142.72  Aligned_cols=83  Identities=23%  Similarity=0.384  Sum_probs=74.3

Q ss_pred             hcCCcCCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954           36 LSKTGAEISVGQAQR------VALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        36 ~~~~~~~LSgG~~qr------v~ia~al~~~p~llllDEPt~~LD~~~~~-~~~~~l~~l~~~~g~tvi~itH~~~~~~~  108 (146)
                      .++++.+||+||+||      ++||||++.+|+++++||||++||+..+. .+.+.|.+++++.|.++|++||+++.+ .
T Consensus       109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~  187 (204)
T cd03240         109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-D  187 (204)
T ss_pred             HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-h
Confidence            467889999999996      78999999999999999999999999999 999999998754488999999999876 5


Q ss_pred             hcCeEEEEECC
Q 046954          109 IADVVCLLVNG  119 (146)
Q Consensus       109 ~~d~v~~l~~G  119 (146)
                      .||+++.|++.
T Consensus       188 ~~d~i~~l~~~  198 (204)
T cd03240         188 AADHIYRVEKD  198 (204)
T ss_pred             hCCEEEEEeeC
Confidence            69999998643

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=3.9e-21  Score=170.38  Aligned_cols=117  Identities=29%  Similarity=0.483  Sum_probs=99.0

Q ss_pred             cHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954           18 TENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK   87 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~   87 (146)
                      .++++=++|+..+|.+..          ...-+.++|-||||.+|+||||++++++|+|||+||+.|+.+-..+.+.|++
T Consensus      1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred             CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence            355666777777663211          1123568999999999999999999999999999999999999999999998


Q ss_pred             HHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           88 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        88 l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      --+  ++|||.|.|+++.+.. ||||+||++|++++.++|.++..+..+.
T Consensus      1321 ~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1321 EFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred             Hhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCcch
Confidence            653  8999999999999998 8999999999999999999987654443

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.85  E-value=1.2e-21  Score=144.20  Aligned_cols=126  Identities=27%  Similarity=0.490  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954           18 TENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT   95 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t   95 (146)
                      .+.++.+++.++|+.+  +....||.+|.-||-|+|.||.|++..|++||.||||+++++.++.+++.+|.++.+..|.|
T Consensus       132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt  211 (330)
T COG4170         132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT  211 (330)
T ss_pred             hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence            3567888999999963  34456899999999999999999999999999999999999999999999999998878999


Q ss_pred             EEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           96 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        96 vi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      |++++||+..+.++||++-||..|+-++.++.+++. .+.++++.+++.
T Consensus       212 ILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~  260 (330)
T COG4170         212 ILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIR  260 (330)
T ss_pred             EEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHHHH
Confidence            999999999999999999999999999999888865 456788877754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=1.2e-21  Score=137.31  Aligned_cols=113  Identities=28%  Similarity=0.417  Sum_probs=94.4

Q ss_pred             ChHHHhhcCccc--cCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQL--RGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      +|.+|+.|....  ++. ..+..+..++++.|++ ...++.|.+||||||-||++-|+|+..|+.++||||||.||..-+
T Consensus        93 sVg~Nl~fAlp~~~KG~-aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR  170 (213)
T COG4136          93 SVGQNLLFALPATLKGN-ARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR  170 (213)
T ss_pred             ccccceEEecCcccccH-HHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence            577888886432  221 2344578899999996 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      .++.+.+..-.+..|.-+++||||...+. ...||+-+
T Consensus       171 ~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         171 DQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            99999987766778999999999998886 45566544

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=3.9e-21  Score=142.77  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=78.9

Q ss_pred             HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .++++.++++ +..++++.+||+|||||++||+|++.    +|+++++||||+|||+.++..+.+.+.++++  +.++|+
T Consensus       109 ~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~ii  185 (212)
T cd03274         109 GEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIV  185 (212)
T ss_pred             CcEEEeeccc-cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEE
Confidence            3445667775 45677889999999999999999974    5799999999999999999999999999853  679999


Q ss_pred             EecCHHHHHhhcCeEEEEEC
Q 046954           99 VSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~  118 (146)
                      +||+. ++.++||++++|..
T Consensus       186 vs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         186 ISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             EECcH-HHHHhCCEEEEEEe
Confidence            99995 67789999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.8e-20  Score=151.46  Aligned_cols=102  Identities=30%  Similarity=0.414  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           18 TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      .+++++.-|..+|++.++......+||||||-||+||.+...+|-+|+|||||+.||..+...+.+.|+.+    +-.||
T Consensus       458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv  533 (582)
T KOG0062|consen  458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVV  533 (582)
T ss_pred             CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEE
Confidence            46778899999999988888888999999999999999999999999999999999999999999998876    34999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEEE
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIVE  123 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~~  123 (146)
                      +||||.+++...|+.+|+.++|++..
T Consensus       534 ~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  534 LVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             EEECcHHHHhhcCceeEEEcCCcEEe
Confidence            99999999999999999999999864

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.4e-20  Score=134.29  Aligned_cols=99  Identities=27%  Similarity=0.366  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +.++..++.++++++.+..-.|.++||||||||.|||.++.+=++|+|||||++||..++.-+.++|.+-+ ..|.++|=
T Consensus       129 ~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvG  207 (235)
T COG4778         129 RAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVG  207 (235)
T ss_pred             HHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEE
Confidence            45677899999998778889999999999999999999999999999999999999999999999999975 46999999


Q ss_pred             EecCHHHHHhhcCeEEEEEC
Q 046954           99 VSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~  118 (146)
                      |-||-+.=+..|||++-+..
T Consensus       208 IFHDeevre~vadR~~~~~~  227 (235)
T COG4778         208 IFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             eeccHHHHHHHhhheeeccc
Confidence            99998888889999987753

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=1.4e-20  Score=139.85  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHhh
Q 046954           35 FLSKTGAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQIQRI  109 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g-~tvi~itH~~~~~~~~  109 (146)
                      +.+..+.+||+||||++.+++++    +.+|+++|+||||++||+..+..+.+.+.+++++.| .++|++||++..+..+
T Consensus       119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~  198 (213)
T cd03277         119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY  198 (213)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence            44667889999999999877654    589999999999999999999999999999875424 5899999999888888


Q ss_pred             cC--eEEEEECCE
Q 046954          110 AD--VVCLLVNGE  120 (146)
Q Consensus       110 ~d--~v~~l~~G~  120 (146)
                      +|  +|++|++|+
T Consensus       199 ~~~~~v~~l~~g~  211 (213)
T cd03277         199 HEKMTVLCVYNGP  211 (213)
T ss_pred             cCceEEEEEecCc
Confidence            87  689999886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.83  E-value=1.8e-21  Score=139.53  Aligned_cols=111  Identities=29%  Similarity=0.440  Sum_probs=100.4

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc-----CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN-----EP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKH   92 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~-----~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~   92 (146)
                      ..+..++..++++ +...+...+|||||.|||-+|...++     ||  +++|+|||.++||...+..+..+|.++++ .
T Consensus       104 ~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~  181 (248)
T COG4138         104 ELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-Q  181 (248)
T ss_pred             HHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-C
Confidence            4567788889996 57889999999999999999998764     45  59999999999999999999999999997 4


Q ss_pred             CCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           93 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        93 g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |.+|||++||++.-.+.+|++++|++|++...|..+++..
T Consensus       182 G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT  221 (248)
T ss_pred             CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence            9999999999999999999999999999999999988754

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.83  E-value=3.5e-20  Score=149.28  Aligned_cols=129  Identities=24%  Similarity=0.447  Sum_probs=106.8

Q ss_pred             ChHHHhhcCcccc------C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954            1 TVADNIRYGPQLR------G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS   71 (146)
Q Consensus         1 tv~eni~~~~~~~------~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~   71 (146)
                      |+.||+.+.....      + ..  .......++.+.+++-..-...+..+||||.+||+-+||-|..+|++||+.+||.
T Consensus       353 sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr  432 (501)
T COG3845         353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR  432 (501)
T ss_pred             cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence            5788887764321      1 01  1123466778888874222445678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |||..+.+.+.+.|.+.++ .|++|+++|-|++++..+||||.+|.+|+++...++++.
T Consensus       433 GLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~  490 (501)
T COG3845         433 GLDVGAIEFIHERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA  490 (501)
T ss_pred             cccHHHHHHHHHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence            9999999999999999975 599999999999999999999999999999988887764

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=147.39  Aligned_cols=107  Identities=32%  Similarity=0.356  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      ++..++.-+|...+..++.+.+||||+|.|+++||+|..+|++|||||||++||+.+..-+-+.|.++-   ..++++++
T Consensus       200 k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~s  276 (614)
T KOG0927|consen  200 KAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVS  276 (614)
T ss_pred             HHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEe
Confidence            445555555555567888999999999999999999999999999999999999999999999988762   22899999


Q ss_pred             cCHHHHHhhcCeEEEEECCE-EEEeeCcccc
Q 046954          101 HSIKQIQRIADVVCLLVNGE-IVEVLKPDLL  130 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G~-i~~~g~~~~~  130 (146)
                      |.-+++-.+|..|+.|.+++ +.+.|+.+.+
T Consensus       277 h~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  277 HSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY  307 (614)
T ss_pred             cchhhhhhHhhhhheecccceeeecCCHHHH
Confidence            99999999999999999999 5567777655

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.80  E-value=6.6e-19  Score=127.63  Aligned_cols=74  Identities=24%  Similarity=0.357  Sum_probs=68.3

Q ss_pred             CChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           43 ISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        43 LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      ||+||+||++||++++    .+|+++++|||+++||+..+..+.+.+.++.+ .|.++|++||+++.+ ..+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~-~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMF-ENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence            9999999999999996    69999999999999999999999999999875 489999999998876 57999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=2.7e-20  Score=163.08  Aligned_cols=127  Identities=28%  Similarity=0.366  Sum_probs=108.1

Q ss_pred             ChHHHhhcCccccCCC-----ccHHHHHHHHHHcCCChhhhcCCcC----CCChhHHHHHHHHHHHhcCC-CEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLSKTGA----EISVGQAQRVALARTLANEP-EVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgG~~qrv~ia~al~~~p-~llllDEPt   70 (146)
                      ||+|-+.|.+.++..+     ...+.++++++.++|+ ++.+.-++    .||..||+|+.||--|+.+| .+|+|||||
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT  958 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT  958 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence            7999999987766321     1225688899999995 46665444    49999999999999999999 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEE-CCEEEEeeCccc
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLV-NGEIVEVLKPDL  129 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~~  129 (146)
                      ||||.++...+++.++++++ .|.||+++-|+++ .+.+..||+++|+ .|+.++.|+..+
T Consensus       959 SGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  959 SGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             CCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            99999999999999999997 5999999999987 4778899999997 568999998754

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.5e-19  Score=146.14  Aligned_cols=106  Identities=27%  Similarity=0.370  Sum_probs=93.0

Q ss_pred             HHHH-HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           21 EVYK-LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        21 ~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ++.. +|.-+|.+.+...++.++||||.|.|+++||||..+|++|||||||+.||..+...+.+.|..+    +.|+|+|
T Consensus       176 ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liV  251 (582)
T KOG0062|consen  176 EIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIV  251 (582)
T ss_pred             HHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEE
Confidence            3444 7778888877788899999999999999999999999999999999999999999999988764    5799999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEE-EEeeCcccc
Q 046954          100 SHSIKQIQRIADVVCLLVNGEI-VEVLKPDLL  130 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~  130 (146)
                      |||-++.-..|..|+.+++-++ .+.|+-+++
T Consensus       252 SHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F  283 (582)
T KOG0062|consen  252 SHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF  283 (582)
T ss_pred             eccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence            9999999999999999988777 345666555

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.78  E-value=1.7e-18  Score=146.11  Aligned_cols=121  Identities=29%  Similarity=0.426  Sum_probs=103.5

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      +....|..+||..-.+.++..+|||||.|||-+|.-|....   -++||||||+||=..-.+++++.|.++.. .|.|||
T Consensus       801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi  879 (935)
T COG0178         801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI  879 (935)
T ss_pred             HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            34456677888644467888999999999999999998777   89999999999999999999999999986 599999


Q ss_pred             EEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      +|.|+++.+. .||.|+=|      ..|+|++.|+|+++.....+++..|++
T Consensus       880 VIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk  930 (935)
T COG0178         880 VIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK  930 (935)
T ss_pred             EEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence            9999998774 59999887      568999999999986555667777764

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.78  E-value=1e-18  Score=134.38  Aligned_cols=77  Identities=19%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           42 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      +|||||+||+++|++++.    +|+++++|||+++||+.....+.+.|.++.+  +.|+|++||++.. ..+||++++|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-~~~~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-AAMADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-HHhcCcEEEEE
Confidence            499999999999997654    9999999999999999999999999999863  7899999999985 57899999998


Q ss_pred             CCEE
Q 046954          118 NGEI  121 (146)
Q Consensus       118 ~G~i  121 (146)
                      +|..
T Consensus       247 ~~~~  250 (276)
T cd03241         247 KEVE  250 (276)
T ss_pred             EecC
Confidence            8754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.78  E-value=8.9e-19  Score=140.45  Aligned_cols=93  Identities=28%  Similarity=0.453  Sum_probs=86.4

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      ++++-++|+ .+.++++.+|||||.|||+||.||..++++++||||+|.||.+.+-.+.+.|+++....++|.++|.||+
T Consensus       438 ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi  516 (591)
T COG1245         438 EIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI  516 (591)
T ss_pred             hhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence            456667774 6889999999999999999999999999999999999999999999999999999887889999999999


Q ss_pred             HHHHhhcCeEEEEE
Q 046954          104 KQIQRIADVVCLLV  117 (146)
Q Consensus       104 ~~~~~~~d~v~~l~  117 (146)
                      ..+--++||+++++
T Consensus       517 ~~~dyvsDr~ivF~  530 (591)
T COG1245         517 YMIDYVSDRLIVFE  530 (591)
T ss_pred             ehhhhhhceEEEEe
Confidence            99999999999984

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.78  E-value=4.2e-19  Score=144.34  Aligned_cols=107  Identities=26%  Similarity=0.366  Sum_probs=94.9

Q ss_pred             cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           18 TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      ..+.+..++.++|+..+-.+.+..+||+|||.||.+|+.++..|.+|+|||||++||..+...+.+.|.++    .-+||
T Consensus       485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv  560 (614)
T KOG0927|consen  485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVV  560 (614)
T ss_pred             hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCcee
Confidence            34668889999999866677888999999999999999999999999999999999999999999998775    34999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEE-EeeCcc
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIV-EVLKPD  128 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~  128 (146)
                      ++|||+..+.+++++|++..+|.+. ..|+..
T Consensus       561 ~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~  592 (614)
T KOG0927|consen  561 LVSHDFRLISQVAEEIWVCENGTVTKWDGDIE  592 (614)
T ss_pred             eeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence            9999999999999999999999874 345543

>TIGR00618 sbcc exonuclease SbcC

Probab=99.76  E-value=3.2e-18  Score=151.38  Aligned_cols=84  Identities=21%  Similarity=0.203  Sum_probs=77.9

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           35 FLSKTGAEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      ..++++.+|||||++||+||+||+.          +|++||+||||+|||+.+...+++.|.++.. .|++|++|||+++
T Consensus       943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618       943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence            3456789999999999999999986          7999999999999999999999999999975 6999999999999


Q ss_pred             HHHhhcCeEEEEECC
Q 046954          105 QIQRIADVVCLLVNG  119 (146)
Q Consensus       105 ~~~~~~d~v~~l~~G  119 (146)
                      +...++|+|.|++.|
T Consensus      1022 ~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1022 FRERIPHRILVKKTN 1036 (1042)
T ss_pred             HHHhhCCEEEEEECC
Confidence            999999999999765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.75  E-value=5.8e-18  Score=135.81  Aligned_cols=95  Identities=28%  Similarity=0.466  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      .+++.++++|. ...++.+.+|||||.||++||.|++++++++++|||+|-||...+-...+.++++++. +++||+|.|
T Consensus       194 ~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEH  271 (591)
T COG1245         194 FDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEH  271 (591)
T ss_pred             HHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEec
Confidence            56778888995 6889999999999999999999999999999999999999999999999999999865 899999999


Q ss_pred             CHHHHHhhcCeEEEEEC
Q 046954          102 SIKQIQRIADVVCLLVN  118 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l~~  118 (146)
                      |+..+.-++|-|.++..
T Consensus       272 DLavLD~lsD~vhI~YG  288 (591)
T COG1245         272 DLAVLDYLSDFVHILYG  288 (591)
T ss_pred             hHHHHHHhhheeEEEec
Confidence            99999999999988853

>TIGR00634 recN DNA repair protein RecN

Probab=99.75  E-value=5.7e-18  Score=141.54  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             CCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           41 AEISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ..|||||+||++||++++..    |+++|||||++|||+.....+.+.|.++.+  +.+||+|||++..+. +||++++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEE
Confidence            47899999999999999985    699999999999999999999999999963  899999999998774 89999999


Q ss_pred             ECCE
Q 046954          117 VNGE  120 (146)
Q Consensus       117 ~~G~  120 (146)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            9875

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.74  E-value=1.4e-17  Score=118.79  Aligned_cols=76  Identities=25%  Similarity=0.371  Sum_probs=69.6

Q ss_pred             CCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           41 AEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      .+||+||+||+++|++|+.    +|+++|+|||++|+|+.....+.+.+.++.++ |.++|++||+++.+. .+|+++.|
T Consensus        76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l  153 (162)
T cd03227          76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHI  153 (162)
T ss_pred             eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEE
Confidence            4799999999999999987    78999999999999999999999999998765 899999999998775 58999998


Q ss_pred             EC
Q 046954          117 VN  118 (146)
Q Consensus       117 ~~  118 (146)
                      +.
T Consensus       154 ~~  155 (162)
T cd03227         154 KK  155 (162)
T ss_pred             EE
Confidence            64

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.73  E-value=1.7e-17  Score=122.07  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=76.2

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954           35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV  113 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v  113 (146)
                      ..+...+++|+||+|++.+++++ .+|+++++|||++|+|+..+..+. ..+.++.+ .|.++|++||+. .+..++|++
T Consensus        84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~-~l~~~~d~~  160 (200)
T cd03280          84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG-ELKAYAYKR  160 (200)
T ss_pred             hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH-HHHHHHhcC
Confidence            34556789999999999999884 899999999999999999999996 46777754 589999999985 567899999


Q ss_pred             EEEECCEEEEee
Q 046954          114 CLLVNGEIVEVL  125 (146)
Q Consensus       114 ~~l~~G~i~~~g  125 (146)
                      +.|++|++..++
T Consensus       161 ~~l~~g~l~~~~  172 (200)
T cd03280         161 EGVENASMEFDP  172 (200)
T ss_pred             CCeEEEEEEEec
Confidence            999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.72  E-value=1.5e-17  Score=138.47  Aligned_cols=80  Identities=26%  Similarity=0.326  Sum_probs=70.7

Q ss_pred             CCcCCCChhHHHHHHHHHHHh----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954           38 KTGAEISVGQAQRVALARTLA----------NEPEVLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~----------~~p~llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~  106 (146)
                      .++.+|||||+||++||+||+          .+|+++|||||| ++||+.+...+.+.|.++ +  |.+||+|||+....
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~~~~  540 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKDHDP  540 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECchhch
Confidence            356899999999999999987          599999999998 789999999999999998 3  88999999997655


Q ss_pred             HhhcCeEEEEEC-CEE
Q 046954          107 QRIADVVCLLVN-GEI  121 (146)
Q Consensus       107 ~~~~d~v~~l~~-G~i  121 (146)
                       ..+|++++|.+ |+.
T Consensus       541 -~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 -QKFDRHLKMEKVGRF  555 (562)
T ss_pred             -hhhhcEEEEEEECCe
Confidence             56899999986 554

>PRK10869 recombination and repair protein; Provisional

Probab=99.72  E-value=4.7e-17  Score=135.67  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           42 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      .|||||+||++||++++.    +|+++|+|||++|||+.+...+.+.|+++++  +.+||+|||++..+ .+||+.+++.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence            589999999999999997    6899999999999999999999999999963  79999999999866 7899999998


Q ss_pred             CCE
Q 046954          118 NGE  120 (146)
Q Consensus       118 ~G~  120 (146)
                      ++.
T Consensus       507 k~~  509 (553)
T PRK10869        507 KET  509 (553)
T ss_pred             ccc
Confidence            864

>PRK03918 chromosome segregation protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=139.34  Aligned_cols=80  Identities=28%  Similarity=0.363  Sum_probs=69.9

Q ss_pred             cCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           37 SKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        37 ~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      +.++..|||||+|      |++||++++.+|+++|+||||++||+..+..+.++|..+.. .+.+||+|||+++ +..+|
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~-~~~~~  860 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEE-LKDAA  860 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHhC
Confidence            3567899999999      45566678899999999999999999999999999999865 4789999999987 45789


Q ss_pred             CeEEEEEC
Q 046954          111 DVVCLLVN  118 (146)
Q Consensus       111 d~v~~l~~  118 (146)
                      |++++|..
T Consensus       861 d~~~~l~~  868 (880)
T PRK03918        861 DYVIRVSL  868 (880)
T ss_pred             CeEEEEEe
Confidence            99999983

>PRK01156 chromosome segregation protein; Provisional

Probab=99.68  E-value=5.2e-16  Score=135.59  Aligned_cols=79  Identities=29%  Similarity=0.422  Sum_probs=68.9

Q ss_pred             CCcCCCChhHHHHHHH------HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-C-CeEEEEecCHHHHHhh
Q 046954           38 KTGAEISVGQAQRVAL------ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-G-MTIVMVSHSIKQIQRI  109 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~i------a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~-g-~tvi~itH~~~~~~~~  109 (146)
                      .++..|||||+++++|      |++++.+|++++|||||++||+.....+.++|....+.. | .++|+|||++..+ .+
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~  875 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV  875 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence            3578999999999975      589999999999999999999999999999998654433 3 4899999999876 68


Q ss_pred             cCeEEEEE
Q 046954          110 ADVVCLLV  117 (146)
Q Consensus       110 ~d~v~~l~  117 (146)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999997

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.68  E-value=2.3e-16  Score=139.59  Aligned_cols=82  Identities=28%  Similarity=0.257  Sum_probs=75.7

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           36 LSKTGAEISVGQAQRVALARTLAN--------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~--------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      .++++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..+.+ .|++|++|||......
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKE 1021 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHH
Confidence            347889999999999999999996        8999999999999999999999999999975 5999999999999999


Q ss_pred             hhcCeEEEEEC
Q 046954          108 RIADVVCLLVN  118 (146)
Q Consensus       108 ~~~d~v~~l~~  118 (146)
                      ++..+|.|-+.
T Consensus      1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246       1022 RIPVQIKVKKI 1032 (1047)
T ss_pred             hccceEEEEEC
Confidence            98888888875

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.65  E-value=1.5e-15  Score=128.46  Aligned_cols=116  Identities=28%  Similarity=0.408  Sum_probs=98.8

Q ss_pred             HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      |-.+||+.--++|...+|||||.||+.+|.-+-.+=-  +++||||+.||=+....++++.|+++++ .|-|+|+|.||.
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe  543 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE  543 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH
Confidence            4456776333678889999999999999999977653  8999999999999999999999999975 699999999998


Q ss_pred             HHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954          104 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus       104 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      +.+. .||+|+=|      +.|+|++.|+++++....++++..|+.
T Consensus       544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLs  588 (935)
T COG0178         544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLS  588 (935)
T ss_pred             HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhc
Confidence            7665 59999866      678999999999998766677777763

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.65  E-value=6.7e-16  Score=128.32  Aligned_cols=111  Identities=24%  Similarity=0.336  Sum_probs=86.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK------TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      |.+|-+.++....  ...++++.++|.++||+ ++.++      --..||+|||||+++||.++++|++++|||.|++||
T Consensus       471 tLre~l~YP~~~~--~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD  547 (604)
T COG4178         471 TLREALCYPNAAP--DFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD  547 (604)
T ss_pred             cHHHHHhCCCCCC--CCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence            3455555543221  13467788899999995 34332      235799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      +.+...+.+.+++-.  .+.|||-|+|.. .+..+.++.+-+.
T Consensus       548 e~~e~~l~q~l~~~l--p~~tvISV~Hr~-tl~~~h~~~l~l~  587 (604)
T COG4178         548 EETEDRLYQLLKEEL--PDATVISVGHRP-TLWNFHSRQLELL  587 (604)
T ss_pred             hHHHHHHHHHHHhhC--CCCEEEEeccch-hhHHHHhhheeec
Confidence            999999999998854  389999999996 4556777765554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.63  E-value=5.8e-16  Score=137.16  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=69.9

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           36 LSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      .+.++.+|||||+++++||++++    .+|+++||||||++||+.+...+.++|..+++  +.++|+|||++..+ .+||
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d 1159 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVAD 1159 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhh
Confidence            45678899999999999999985    67799999999999999999999999999864  57899999999876 6799


Q ss_pred             eEEEEE
Q 046954          112 VVCLLV  117 (146)
Q Consensus       112 ~v~~l~  117 (146)
                      +++.+.
T Consensus      1160 ~~~~~~ 1165 (1179)
T TIGR02168      1160 QLYGVT 1165 (1179)
T ss_pred             hHeeee
Confidence            987653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.63  E-value=1.2e-15  Score=137.61  Aligned_cols=72  Identities=26%  Similarity=0.451  Sum_probs=65.6

Q ss_pred             CcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCCeEEEEecCHHHHHh
Q 046954           39 TGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        39 ~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~----~~g~tvi~itH~~~~~~~  108 (146)
                      .++.|||||||      |++||+|++.+|++|+|||||+|||+.+...+.+.|..+..    ..|.+||+|||+++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            45789999999      99999999999999999999999999999999999988742    237899999999999998


Q ss_pred             hc
Q 046954          109 IA  110 (146)
Q Consensus       109 ~~  110 (146)
                      +|
T Consensus      1276 ~~ 1277 (1311)
T TIGR00606      1276 LG 1277 (1311)
T ss_pred             Hh
Confidence            86

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.63  E-value=7.3e-16  Score=115.28  Aligned_cols=96  Identities=18%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al--~~~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .++..+++.+    .....+|.|+++++.+++++  +.+|+++|||||   |+++|+.+...  ..+..+.++.|.++|+
T Consensus        75 ~il~~~~l~d----~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli  148 (222)
T cd03285          75 CILARVGASD----SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF  148 (222)
T ss_pred             eeEeeecccc----chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence            3445555532    22567999999999999999  899999999999   89999988853  3345554334899999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      +||+ .++.++||++..+++|++...++
T Consensus       149 sTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         149 ATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             Eech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            9996 77889999999999999977654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.60  E-value=2.3e-15  Score=115.51  Aligned_cols=77  Identities=23%  Similarity=0.227  Sum_probs=66.4

Q ss_pred             cCCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           40 GAEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      ...+|+||+|+++||++|+         .+|+++|+||||++||+..+..+.+.+.++    + .+++++|+...+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence            3458999999999999986         799999999999999999999999998764    3 4677777777787877


Q ss_pred             ---CeEEEEECCEE
Q 046954          111 ---DVVCLLVNGEI  121 (146)
Q Consensus       111 ---d~v~~l~~G~i  121 (146)
                         .+++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=2.7e-15  Score=120.66  Aligned_cols=99  Identities=31%  Similarity=0.349  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+.+...|-.+||..+--.-....|||||+-||++|-.-+..|++|||||||++||.++...+.+.|.++    +-.||+
T Consensus       681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~  756 (807)
T KOG0066|consen  681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIM  756 (807)
T ss_pred             hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEE
Confidence            3445666777777543223356799999999999999999999999999999999999999999998876    448999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEE
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ||||-..+.+..=..||+++-.|
T Consensus       757 VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  757 VSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             EecccceeeecCceEEEEccCCh
Confidence            99998887775556777766544

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5.2e-16  Score=124.71  Aligned_cols=100  Identities=28%  Similarity=0.375  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +.++..+|.-+|.+....+++...+|||.|.||++||||...|-+|+|||||+.||..+...+-+.|.-+.    +|.++
T Consensus       389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLI  464 (807)
T KOG0066|consen  389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLI  464 (807)
T ss_pred             hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEE
Confidence            45677788888888777888889999999999999999999999999999999999999999988888763    59999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEEE
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEIV  122 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i~  122 (146)
                      ||||-.++...|..|+.|++-++-
T Consensus       465 VSHDQgFLD~VCtdIIHLD~qkLh  488 (807)
T KOG0066|consen  465 VSHDQGFLDSVCTDIIHLDNQKLH  488 (807)
T ss_pred             EecccchHHHHHHHHhhhhhhhhh
Confidence            999999999999999999988874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.57  E-value=5e-15  Score=102.09  Aligned_cols=51  Identities=39%  Similarity=0.642  Sum_probs=43.1

Q ss_pred             HHHHHHHHHcCCChhhhcCCc----CCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954           20 NEVYKLLSLADLDSSFLSKTG----AEISVGQAQRVALARTLANEPEVLLLDEPTS   71 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~----~~LSgG~~qrv~ia~al~~~p~llllDEPt~   71 (146)
                      .++..+++.+++. ++.++.+    .+||+|||||++||+||+.+|+++|||||||
T Consensus        83 ~~~~~~l~~l~~~-~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   83 ERIEEVLKKLGLE-DLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHTTHG-GGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccccccccc-cccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4577788888874 3444444    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.56  E-value=9.1e-15  Score=129.88  Aligned_cols=79  Identities=18%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954           37 SKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV  112 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~  112 (146)
                      ..++..||||||++++||++|+.    +|+++|||||+++||+.++..+.++|.++.+  +.++|+|||+...+ .+||+
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhcce
Confidence            45678999999999999999985    7899999999999999999999999999853  57899999998655 78999


Q ss_pred             EEEEEC
Q 046954          113 VCLLVN  118 (146)
Q Consensus       113 v~~l~~  118 (146)
                      ++.+..
T Consensus      1146 ~~~~~~ 1151 (1164)
T TIGR02169      1146 AIGVTM 1151 (1164)
T ss_pred             eEeEEE
Confidence            987754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.54  E-value=1.5e-14  Score=106.31  Aligned_cols=103  Identities=28%  Similarity=0.403  Sum_probs=91.2

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ++-+.+.+.++++   ...+-+.+|-|||+||.|++.|++.=++|+|||-|-.||.-++..+++.+++-+.+.|+||++.
T Consensus       128 ~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYA  204 (291)
T KOG2355|consen  128 ERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYA  204 (291)
T ss_pred             hHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEE
Confidence            4455666666664   2334578999999999999999999999999999999999999999999999998889999999


Q ss_pred             ecCHHHHHhhcCeEEEEECCEEEEee
Q 046954          100 SHSIKQIQRIADVVCLLVNGEIVEVL  125 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l~~G~i~~~g  125 (146)
                      ||-.+-.+.+...++.++.|+++-.-
T Consensus       205 THIFDGLe~Wpthl~yi~~Gkl~~~l  230 (291)
T KOG2355|consen  205 THIFDGLETWPTHLVYIKSGKLVDNL  230 (291)
T ss_pred             eeeccchhhcchhEEEecCCeeeecc
Confidence            99999999999999999999998643

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=7.6e-15  Score=129.34  Aligned_cols=130  Identities=23%  Similarity=0.292  Sum_probs=107.2

Q ss_pred             ChHHHhhcCccccCC-----CccH-H----HHHHHHHHcCCChh----hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954            1 TVADNIRYGPQLRGK-----KLTE-N----EVYKLLSLADLDSS----FLSKTGAEISVGQAQRVALARTLANEPEVLLL   66 (146)
Q Consensus         1 tv~eni~~~~~~~~~-----~~~~-~----~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~ia~al~~~p~llll   66 (146)
                      ||+|.+.|.++..+.     ...+ +    ..+.+++.+||+..    .-|...+..|||||+||.+|-+++.+|+++.+
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            678888887765442     1112 2    24467899999521    22344578999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      ||+|.|||..+.-++.+.++++++..+.|++++-++.. ++..+.|.|++|.+|+++..|+.++.
T Consensus       285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~  349 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEV  349 (1391)
T ss_pred             ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence            99999999999999999999999877889999888865 58889999999999999999998764

>PRK02224 chromosome segregation protein; Provisional

Probab=99.53  E-value=3.8e-14  Score=123.69  Aligned_cols=79  Identities=32%  Similarity=0.457  Sum_probs=68.5

Q ss_pred             CcCCCChhHHH------HHHHHHHHhcC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEecCHHH
Q 046954           39 TGAEISVGQAQ------RVALARTLANE-----P-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQ  105 (146)
Q Consensus        39 ~~~~LSgG~~q------rv~ia~al~~~-----p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~-tvi~itH~~~~  105 (146)
                      ++..||||||+      |++++++++.+     | +++|+||||++||+.....+.++|..+.. .|. +||+|||++..
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~  856 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL  856 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence            36799999999      89999998864     3 67999999999999999999999999874 364 89999999988


Q ss_pred             HHhhcCeEEEEECC
Q 046954          106 IQRIADVVCLLVNG  119 (146)
Q Consensus       106 ~~~~~d~v~~l~~G  119 (146)
                      +. .||+++.+...
T Consensus       857 ~~-~ad~~~~~~~~  869 (880)
T PRK02224        857 VG-AADDLVRVEKD  869 (880)
T ss_pred             HH-hcCeeEEeecC
Confidence            75 69999999654

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.53  E-value=1.8e-14  Score=114.40  Aligned_cols=106  Identities=30%  Similarity=0.397  Sum_probs=90.3

Q ss_pred             cHHHHHHHHHHcCCCh--hhhcCC--cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046954           18 TENEVYKLLSLADLDS--SFLSKT--GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG   93 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~--~~~~~~--~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g   93 (146)
                      ..+.+..+++++.+..  .+.|..  +-.||.|||+|+++.-|++-+-+++++||=.+.-||.-++.+.+.+.-+.++.|
T Consensus       420 s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG  499 (546)
T COG4615         420 SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG  499 (546)
T ss_pred             ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC
Confidence            4567888888877642  122332  347999999999999999999999999999999999999999999888777889


Q ss_pred             CeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954           94 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEV  124 (146)
Q Consensus        94 ~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~  124 (146)
                      +||+.|||| +.-...|||++.+++|++++.
T Consensus       500 KTI~aIsHD-d~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         500 KTIFAISHD-DHYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             CeEEEEecC-chhhhhHHHHHHHhcCceeec
Confidence            999999999 556678999999999999875

>PRK00064 recF recombination protein F; Reviewed

Probab=99.51  E-value=7.2e-14  Score=111.33  Aligned_cols=78  Identities=26%  Similarity=0.353  Sum_probs=68.6

Q ss_pred             cCCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           40 GAEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      ...+|.||+|++.+|++|+         .+|+++|||||+++||+..+..+.+.+.++    +..++++||+.+.+...+
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence            3589999999999999996         699999999999999999999999988653    458999999988776664


Q ss_pred             --CeEEEEECCEE
Q 046954          111 --DVVCLLVNGEI  121 (146)
Q Consensus       111 --d~v~~l~~G~i  121 (146)
                        ++++.+++|++
T Consensus       347 ~~~~i~~v~~G~i  359 (361)
T PRK00064        347 ENAKIFHVEQGKI  359 (361)
T ss_pred             ccCcEEEEeCCEE
Confidence              57999999987

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.50  E-value=9.7e-14  Score=102.15  Aligned_cols=89  Identities=16%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ...+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+.. ++..+. +.+.++|++||+.+.+. .++++..+
T Consensus        87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l  163 (202)
T cd03243          87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGV  163 (202)
T ss_pred             CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCe
Confidence            345677777776 566678889999999999999999999888765 456565 45899999999987665 68899999


Q ss_pred             ECCEEEEeeCccc
Q 046954          117 VNGEIVEVLKPDL  129 (146)
Q Consensus       117 ~~G~i~~~g~~~~  129 (146)
                      ..|++...++..+
T Consensus       164 ~~~~~~~~~~~~~  176 (202)
T cd03243         164 KNLHMEELITTGG  176 (202)
T ss_pred             EEEEEEEEecCCe
Confidence            9999988776543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.44  E-value=5.8e-13  Score=96.87  Aligned_cols=93  Identities=19%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHH
Q 046954           26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      +..++.. +..++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+++
T Consensus        46 l~~~~~~-d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~  123 (185)
T smart00534       46 FTRIGAS-DSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE  123 (185)
T ss_pred             EEEeCCC-CchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence            3445553 34556677899988874333332 3499999999999999999887765 5566665424899999999995


Q ss_pred             HHHhhcCeEEEEECCEE
Q 046954          105 QIQRIADVVCLLVNGEI  121 (146)
Q Consensus       105 ~~~~~~d~v~~l~~G~i  121 (146)
                       +.+++++---++++++
T Consensus       124 -l~~~~~~~~~v~~~~~  139 (185)
T smart00534      124 -LTKLADEHPGVRNLHM  139 (185)
T ss_pred             -HHHHhhcCccceEEEE
Confidence             6677875333444443

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.42  E-value=1.5e-12  Score=107.26  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=83.7

Q ss_pred             ChHHHhhcCccc---cCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954            1 TVADNIRYGPQL---RGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLL   66 (146)
Q Consensus         1 tv~eni~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llll   66 (146)
                      |.+|.+.++...   .....+++++...|+.+++. ++..+           -...||+||+||+++||.+.++|++-+|
T Consensus       516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~-hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiL  594 (659)
T KOG0060|consen  516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLG-HLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAIL  594 (659)
T ss_pred             chhheeeccCccccccccCCCHHHHHHHHHHhhhh-hHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEe
Confidence            456666665321   11223455677666666553 22222           2357999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      ||-||++|......+.+.+++    .|+|.|-|+|.-. ..++-|.++-|..
T Consensus       595 DE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS-L~kfHd~~L~~~g  641 (659)
T KOG0060|consen  595 DECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS-LWKFHDYVLRMDG  641 (659)
T ss_pred             echhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH-HHhhhhEEEEecC
Confidence            999999999999888887654    4999999999976 5567899999964

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.40  E-value=1.8e-12  Score=103.71  Aligned_cols=102  Identities=27%  Similarity=0.478  Sum_probs=90.8

Q ss_pred             HHHHHHHHcCCChh-hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           21 EVYKLLSLADLDSS-FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        21 ~~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      .+.+++.+.|+.+. +..+++++||-|||.|+.||++++..|.+++.||-.|.||+.+...+..-|.+++++.|.|++++
T Consensus       485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv  564 (593)
T COG2401         485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV  564 (593)
T ss_pred             HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence            35678888898643 34566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCHHHHHhh-cCeEEEEECCEEE
Q 046954          100 SHSIKQIQRI-ADVVCLLVNGEIV  122 (146)
Q Consensus       100 tH~~~~~~~~-~d~v~~l~~G~i~  122 (146)
                      ||+.+..-.+ -|.++.+.-|...
T Consensus       565 ThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         565 THRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             ecCHHHHhccCCceeEEeeccccc
Confidence            9999998888 5999988777653

>TIGR00611 recf recF protein

Probab=99.32  E-value=4.7e-12  Score=101.06  Aligned_cols=63  Identities=32%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             CCCChhHHHHHHHHHHHhc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           41 AEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~---------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      ..+|.||+|++.||.+|+.         +|+++|||||+++||+..+..+.+.|.+.    |.+++++||+++.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence            3689999999999999999         99999999999999999999999998753    679999999987654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.31  E-value=1.3e-11  Score=108.40  Aligned_cols=80  Identities=29%  Similarity=0.365  Sum_probs=68.8

Q ss_pred             CCcCCCChhHHHHHHHHHHHh------cC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           38 KTGAEISVGQAQRVALARTLA------NE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~------~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      +++.+|||||+=.++||.+|+      .+  -++++|||||..||+.....+.++|..+... +.+|++|||+.++. ..
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~-e~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELK-ER  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHH-Hh
Confidence            578899999999888887764      45  6999999999999999999999999999764 89999999997655 56


Q ss_pred             cCeEEEEECC
Q 046954          110 ADVVCLLVNG  119 (146)
Q Consensus       110 ~d~v~~l~~G  119 (146)
                      +|.++.++..
T Consensus       889 ~~~~i~V~k~  898 (908)
T COG0419         889 ADVRIRVKKD  898 (908)
T ss_pred             CCeEEEEEec
Confidence            8888777643

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.27  E-value=3.3e-11  Score=89.42  Aligned_cols=88  Identities=27%  Similarity=0.337  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM   94 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~   94 (146)
                      ...+...+....+.       +..||||||..++||.-|+    .++++++||||.++||...+..+.++|.++.+  +.
T Consensus       120 ~~~~~~~l~~~~i~-------~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~  190 (220)
T PF02463_consen  120 LKDLEELLPEVGIS-------PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QS  190 (220)
T ss_dssp             HHHHHHHHHCTTTT-------TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TS
T ss_pred             cccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence            34455666665553       2289999999999997663    56789999999999999999999999999853  68


Q ss_pred             eEEEEecCHHHHHhhcCeEEEE
Q 046954           95 TIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        95 tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      -+|++||+.... ..+|+.+.+
T Consensus       191 Q~ii~Th~~~~~-~~a~~~~~v  211 (220)
T PF02463_consen  191 QFIITTHNPEMF-EDADKLIGV  211 (220)
T ss_dssp             EEEEE-S-HHHH-TT-SEEEEE
T ss_pred             cccccccccccc-ccccccccc
Confidence            999999997655 568886655

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.27  E-value=1.9e-11  Score=90.45  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      ..+..+.+|+|++|+ ..+.+++.+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+.+...++
T Consensus        85 ~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282          85 MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence            345567899999976 455668899999999999999999776665 455666664 59999999999998876653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.27  E-value=1e-11  Score=99.68  Aligned_cols=95  Identities=24%  Similarity=0.391  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      ...+++.+.|. ...++-+.+||||+-||.+||++.++..+++++|||.+-||...+-.-...|+.+.. .+.=||+|.|
T Consensus       194 ~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEH  271 (592)
T KOG0063|consen  194 KEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEH  271 (592)
T ss_pred             HHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEe
Confidence            34556666664 467888899999999999999999999999999999999999999999999999975 4889999999


Q ss_pred             CHHHHHhhcCeEEEEEC
Q 046954          102 SIKQIQRIADVVCLLVN  118 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l~~  118 (146)
                      |++...-++|-+.+|..
T Consensus       272 DLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  272 DLSVLDYLSDFICCLYG  288 (592)
T ss_pred             echHHHhhhcceeEEec
Confidence            99999999999998854

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.26  E-value=1.2e-11  Score=99.27  Aligned_cols=93  Identities=25%  Similarity=0.343  Sum_probs=80.1

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      ..++-+.++ +..++.+..||||++|||++|.+|-..+++++.|||.+-||.+.+..-...++++-=..++|-.+|.||+
T Consensus       439 dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdf  517 (592)
T KOG0063|consen  439 DVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF  517 (592)
T ss_pred             hhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence            344555553 5677888999999999999999999999999999999999999999999998886434578999999999


Q ss_pred             HHHHhhcCeEEEEE
Q 046954          104 KQIQRIADVVCLLV  117 (146)
Q Consensus       104 ~~~~~~~d~v~~l~  117 (146)
                      -.+--++|||++.+
T Consensus       518 ImaTYladrvivf~  531 (592)
T KOG0063|consen  518 IMATYLADRVIVFE  531 (592)
T ss_pred             HHHHhhcceeEEEe
Confidence            88888999999874

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.22  E-value=5.5e-11  Score=85.74  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=67.9

Q ss_pred             hcCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-
Q 046954           36 LSKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-  105 (146)
Q Consensus        36 ~~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD---~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-  105 (146)
                      .+..+..+|+|++|      ......+...+|+++++|||++.+|   ......+.+.+..+++ .|.|+|+++|+... 
T Consensus        65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~  143 (187)
T cd01124          65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLE  143 (187)
T ss_pred             EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCC
Confidence            44567789999998      5555555678999999999999999   8888888889988875 59999999998765 


Q ss_pred             --------HHhhcCeEEEEE
Q 046954          106 --------IQRIADVVCLLV  117 (146)
Q Consensus       106 --------~~~~~d~v~~l~  117 (146)
                              +..+||.|+.|+
T Consensus       144 ~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         144 GTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             CcccCcCceeEeeeEEEEEE
Confidence                    678899999887

A related protein is found in archaea.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.22  E-value=2.4e-11  Score=110.16  Aligned_cols=65  Identities=23%  Similarity=0.290  Sum_probs=56.2

Q ss_pred             hhcCCcCCCChhHHHHHH----HHHH--------HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954           35 FLSKTGAEISVGQAQRVA----LART--------LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~----ia~a--------l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      +.++.++.|||||||+++    +|++        +..+|++++|||||+|+|+.+...++++|.++    |.++|++||.
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence            344457899999999996    5655        55899999999999999999999999999876    7899999998


Q ss_pred             H
Q 046954          103 I  103 (146)
Q Consensus       103 ~  103 (146)
                      +
T Consensus      1316 ~ 1316 (1353)
T TIGR02680      1316 E 1316 (1353)
T ss_pred             h
Confidence            5

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.20  E-value=4.6e-11  Score=103.34  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ...+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ .|.++|++||+.+.....+++..+.
T Consensus       386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~~v~  463 (782)
T PRK00409        386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKALMYNREGVE  463 (782)
T ss_pred             hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCCCeE
Confidence            34678999999999999998 8999999999999999999998865 5666654 5899999999998887777766554


Q ss_pred             ECCEEEE
Q 046954          117 VNGEIVE  123 (146)
Q Consensus       117 ~~G~i~~  123 (146)
                       ++.+..
T Consensus       464 -~~~~~~  469 (782)
T PRK00409        464 -NASVEF  469 (782)
T ss_pred             -EEEEEE
Confidence             555544

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.19  E-value=4.9e-11  Score=88.90  Aligned_cols=87  Identities=23%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             CCCChhHHHH----HHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           41 AEISVGQAQR----VALARTL--ANEPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        41 ~~LSgG~~qr----v~ia~al--~~~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      .++|.|+.+.    ..+++++  +.+|+++|||||   |+++|....  ...++..+.+..+.++|++||+. ++..++|
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~  160 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEG  160 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhh
Confidence            4678887664    3466665  469999999999   888887552  23444545433388999999996 5567899


Q ss_pred             eEEEEECCEEEEeeCcccc
Q 046954          112 VVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       112 ~v~~l~~G~i~~~g~~~~~  130 (146)
                      ++..+.+|++...++.+++
T Consensus       161 ~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         161 KLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             cCCCeEEEEEEEEeeCCeE
Confidence            9888889998777666654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK14079 recF recombination protein F; Provisional

Probab=99.19  E-value=6.8e-11  Score=93.94  Aligned_cols=76  Identities=30%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           41 AEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      ..+|+||++++.+|+.|+         .+|+++|||||+++||+..+..+.+.|...    ..++|.+|+    ....++
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCc
Confidence            368999999999999999         899999999999999999999999887543    224444343    446799


Q ss_pred             eEEEEECCEEEEe
Q 046954          112 VVCLLVNGEIVEV  124 (146)
Q Consensus       112 ~v~~l~~G~i~~~  124 (146)
                      +++.+++|++.-+
T Consensus       334 ~~~~~~~~~~~~~  346 (349)
T PRK14079        334 LTLRIEAGVFTPE  346 (349)
T ss_pred             eEEEEeccEecCC
Confidence            9999999987543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.16  E-value=3.2e-10  Score=83.48  Aligned_cols=69  Identities=22%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhh--cCeEEE
Q 046954           46 GQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRI--ADVVCL  115 (146)
Q Consensus        46 G~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~--~d~v~~  115 (146)
                      .+.+|+.-+...+.  +|+++|+|||++|+|+.....+. .++.++.+ .|.++|++||+++.+...  .++|-.
T Consensus        89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~  162 (199)
T cd03283          89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRN  162 (199)
T ss_pred             HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence            34455555555555  99999999999999999998775 46788764 589999999999988765  444544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.12  E-value=2.5e-10  Score=83.89  Aligned_cols=67  Identities=24%  Similarity=0.434  Sum_probs=55.3

Q ss_pred             CcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954           39 TGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~  106 (146)
                      +...+|.|++|.+.++.++...+   .++++|||-++|.|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence            45678999999999998888777   89999999999999999999999988765 589999999997643

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.07  E-value=1.3e-10  Score=95.36  Aligned_cols=74  Identities=26%  Similarity=0.345  Sum_probs=62.2

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      ..||||+|||+++||.+.++|++.+|||.|++..+.....+.+..++    .|.+.|-|||.+... ++-..++-. +|+
T Consensus       611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpslw-k~h~~ll~~-dg~  684 (728)
T KOG0064|consen  611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSLW-KYHTHLLEF-DGE  684 (728)
T ss_pred             hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccHH-HHHHHHHhc-cCC
Confidence            46999999999999999999999999999999999888888877554    599999999998755 555655554 443

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.06  E-value=9.2e-10  Score=81.89  Aligned_cols=66  Identities=18%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHh-c-CCeEEEEecCHHHHHhhc
Q 046954           45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKK-H-GMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~-~-g~tvi~itH~~~~~~~~~  110 (146)
                      .-+-||++++++++.+|+++|+|||++|+|+.....+ ..+++++.+. . +.++|++||+.+.+....
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            3457999999999999999999999999999765444 5688888653 1 358999999999887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=98.96  E-value=1.8e-09  Score=77.57  Aligned_cols=81  Identities=11%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      ++...+||+++-++.+++..+.+|+++++|||  +.++|+.    +.+.+.++. +.|.++|+++|+ ..+..++|++..
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~  147 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS  147 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence            34567999999999999999999999999995  4445443    456666655 358999999999 466678999999


Q ss_pred             EECCEEEEe
Q 046954          116 LVNGEIVEV  124 (146)
Q Consensus       116 l~~G~i~~~  124 (146)
                      +.+|+|.+.
T Consensus       148 ~~~~~i~~~  156 (174)
T PRK13695        148 RPGGRVYEL  156 (174)
T ss_pred             cCCcEEEEE
Confidence            999998654

>TIGR01069 mutS2 MutS2 family protein

Probab=98.94  E-value=2.8e-09  Score=92.23  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHH
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~  106 (146)
                      ...+++|+|+++++.|++++ .+|.++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+..
T Consensus       381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~  448 (771)
T TIGR01069       381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK  448 (771)
T ss_pred             hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence            34678999999999998876 78999999999999999999999 466777754 699999999998754

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.90  E-value=3.5e-09  Score=68.58  Aligned_cols=51  Identities=29%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             cCCcCCCChhHH-HHHHHHHHH------hc------CCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954           37 SKTGAEISVGQA-QRVALARTL------AN------EPEVLLLDEPTSALDPISTQNIEDVLVK   87 (146)
Q Consensus        37 ~~~~~~LSgG~~-qrv~ia~al------~~------~p~llllDEPt~~LD~~~~~~~~~~l~~   87 (146)
                      .+..+.+||||+ ..+.+|.++      ..      .|++++|||||++||+.....++++|++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            456789999999 444444433      22      3799999999999999999999999864

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.81  E-value=2.4e-08  Score=76.87  Aligned_cols=79  Identities=14%  Similarity=0.215  Sum_probs=55.1

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--H-----------Hhh
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--I-----------QRI  109 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--~-----------~~~  109 (146)
                      |.+=.|.......+.+++|+++++|||++      .+.+..++..+.  .|+++|++||+.+.  +           ..+
T Consensus       177 ~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~  248 (270)
T TIGR02858       177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEA  248 (270)
T ss_pred             cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCc
Confidence            33333444445555568999999999974      344555555553  49999999997655  4           367


Q ss_pred             cCeEEEEECCEEEEeeCccccc
Q 046954          110 ADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus       110 ~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ++|+++|++|+  ..|+++++.
T Consensus       249 ~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       249 FERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             eEEEEEEecCC--CCCceeecc
Confidence            89999999887  667776654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.80  E-value=7.8e-09  Score=76.40  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=44.8

Q ss_pred             CCCChh--HHHHHHHHHHHhcCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 046954           41 AEISVG--QAQRVALARTLANEPEVLLLDEPT-----SALDPISTQNIEDVLVKLKK   90 (146)
Q Consensus        41 ~~LSgG--~~qrv~ia~al~~~p~llllDEPt-----~~LD~~~~~~~~~~l~~l~~   90 (146)
                      +..||+  +++++.||++++.+|+++++||||     ++||+..++.+.+.++++++
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            344444  899999999999999999999999     99999999999999999863

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.80  E-value=1.4e-08  Score=88.58  Aligned_cols=69  Identities=25%  Similarity=0.346  Sum_probs=61.1

Q ss_pred             hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH---------hhcCeEEEEECCEEEEeeCc
Q 046954           58 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RIADVVCLLVNGEIVEVLKP  127 (146)
Q Consensus        58 ~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~---------~~~d~v~~l~~G~i~~~g~~  127 (146)
                      ..+|+++++|||+.+| |+.....+.+.++.+++ .|.+++++||+++.+.         ..|+++++|.+|++...++.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 79999999999999875 5899999999999886         57999999999998665543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.70  E-value=1.5e-07  Score=70.38  Aligned_cols=63  Identities=17%  Similarity=0.096  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           48 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        48 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      -+++.-....+.+|+++|+|||++|+++.....+... +..+.+..+.++|++||+++.+..++
T Consensus        97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286          97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            4444444444689999999999999999999999888 66666434899999999999888775

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.56  E-value=2.9e-08  Score=75.52  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             cCCCChhH--------HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           40 GAEISVGQ--------AQRVALARTLANEPEVLLLDEPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        40 ~~~LSgG~--------~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~-~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      +..+|||+        +||+++||++..++++.+|  ||+.+|..+... +.  +..+.. .+.|.|+++|++.... .+
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la~~~-~~  200 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLAERR-IF  200 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHhhCC-CC
Confidence            45679999        9999999999999999999  999999655543 44  455542 4789999999998775 58


Q ss_pred             CeEEEEECCEEE
Q 046954          111 DVVCLLVNGEIV  122 (146)
Q Consensus       111 d~v~~l~~G~i~  122 (146)
                      |.|.+|+.|++.
T Consensus       201 paI~vl~s~sr~  212 (249)
T cd01128         201 PAIDILKSGTRK  212 (249)
T ss_pred             CeEEEcCCCCcc
Confidence            999999999974

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13175 AAA_15: AAA ATPase domain

Probab=98.49  E-value=4.6e-07  Score=72.50  Aligned_cols=68  Identities=24%  Similarity=0.381  Sum_probs=57.7

Q ss_pred             CCcCCCChhHHHHHHHHHHHh------cC-CC---EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           38 KTGAEISVGQAQRVALARTLA------NE-PE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~------~~-p~---llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      -+..++|.|.++.+.|+..+.      .+ +.   ++++|||-+.|-|..++.+.+.|.++....+..||++||.+..
T Consensus       337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            356789999999888877653      12 22   9999999999999999999999999987568999999999864

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.44  E-value=1.3e-06  Score=65.41  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      +-+++.-+..-+.+|.++|+|||.+|.|+.....+ ..++..+.+..+.++|++||+.+...
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            34444444445678999999999999997777765 56677776534889999999988754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.44  E-value=4.2e-07  Score=82.09  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=63.4

Q ss_pred             CcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           39 TGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      ....||||||-.++||..++    ...++++|||--++||..+...+..+|++..  .+.-.|+|||...... .||+++
T Consensus      1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~-~ad~l~ 1139 (1163)
T COG1196        1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTME-AADRLV 1139 (1163)
T ss_pred             chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHH-HHHHHe
Confidence            45679999999999999875    5668999999999999999999999999986  3899999999976654 578854

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2.3e-07  Score=80.42  Aligned_cols=75  Identities=25%  Similarity=0.326  Sum_probs=64.9

Q ss_pred             cCCCChhHHHHHHHHHHHh---cCC-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           40 GAEISVGQAQRVALARTLA---NEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~---~~p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      ..+||||||--||||..++   ++| +++|+||.-++||+..+..+..+|+++++  ..-+|++|..++.+ ..||.++-
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~--~aQFI~TTFRpEll-~vAdKfyg 1171 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD--SAQFITTTFRPELL-SVADKFYG 1171 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh--ccceEeecccHHHH-HHHHhhhc
Confidence            3489999999999999886   455 79999999999999999999999999986  47899999998766 57999775


Q ss_pred             EE
Q 046954          116 LV  117 (146)
Q Consensus       116 l~  117 (146)
                      ..
T Consensus      1172 V~ 1173 (1200)
T KOG0964|consen 1172 VK 1173 (1200)
T ss_pred             ee
Confidence            54

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.38  E-value=8.1e-07  Score=66.81  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             CCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------
Q 046954           42 EISVGQAQRVALARTLA----NEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------  105 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~----~~p~llllDEPt~~L----D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--------  105 (146)
                      .+|+++.++-.+.+.+-    .+|+++++||||+++    |+...+.+.+.++.+++ .|.|+++ ||+...        
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~  172 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI  172 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence            46777666555555443    379999999999999    88888999999999875 4776655 555443        


Q ss_pred             HHhhcCeEEEEE
Q 046954          106 IQRIADVVCLLV  117 (146)
Q Consensus       106 ~~~~~d~v~~l~  117 (146)
                      +..+||-|+.|+
T Consensus       173 ~~~~~DgvI~L~  184 (230)
T PRK08533        173 LRTAATMLIRLE  184 (230)
T ss_pred             EEEeeeEEEEEE
Confidence            234556677665

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.37  E-value=2.1e-06  Score=64.37  Aligned_cols=76  Identities=21%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             CCChhHHHHHHHHHHHhc--CCCEEEeeCCCCC---CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-------HHhh
Q 046954           42 EISVGQAQRVALARTLAN--EPEVLLLDEPTSA---LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------IQRI  109 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~--~p~llllDEPt~~---LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-------~~~~  109 (146)
                      ..|.++++.+..+..++.  +|+++++||||+.   .|......+...++.+++ .|.|+++++|+...       +..+
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l  178 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSI  178 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhh
Confidence            357788999999999887  9999999999964   455555566666766664 58999999997654       5566


Q ss_pred             cCeEEEEEC
Q 046954          110 ADVVCLLVN  118 (146)
Q Consensus       110 ~d~v~~l~~  118 (146)
                      +|-++.|+.
T Consensus       179 ~DgvI~L~~  187 (234)
T PRK06067        179 CDVYLKLRA  187 (234)
T ss_pred             eEEEEEEEe
Confidence            777777763

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.37  E-value=6.8e-07  Score=78.51  Aligned_cols=55  Identities=27%  Similarity=0.457  Sum_probs=50.1

Q ss_pred             HHHHHhcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954           53 LARTLANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        53 ia~al~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~  108 (146)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence            677888999999999999999 79999999999999875 58999999999999876

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.34  E-value=7.4e-07  Score=67.12  Aligned_cols=81  Identities=21%  Similarity=0.322  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHH----------------HHhcCCCEEEeeCCCCC------CCHHH
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR----------------TLANEPEVLLLDEPTSA------LDPIS   77 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~----------------al~~~p~llllDEPt~~------LD~~~   77 (146)
                      +++..+...+++. +..++..  ..+|+.|++.+++                +...+|+++++| |+++      +|+..
T Consensus        58 ~Rl~~i~~~~~~~-~~~~rl~--~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~  133 (239)
T cd01125          58 RRLEAILQHLEPD-DAGDRLF--IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGA  133 (239)
T ss_pred             HHHHHHHhhcCCc-CcccceE--EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHH
Confidence            3455566656543 2223322  2356666666554                446899999999 7764      79999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      ...+++.|.+++++.|++|++++|..-
T Consensus       134 ~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         134 MDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            999999999998877999999999863

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.29  E-value=1.3e-06  Score=74.63  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             CcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHh
Q 046954           39 TGAEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~  108 (146)
                      ++..|||||+|-++||..++.      +.++ ++||||+.||+..+..+.. .+..+    +.-||+.|||-+.-..
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~~~  619 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVDEK  619 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhCHH
Confidence            457899999999877765432      3555 5699999999999999875 54432    5689999999665443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.26  E-value=9.7e-06  Score=59.33  Aligned_cols=82  Identities=21%  Similarity=0.328  Sum_probs=64.5

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      +.....|.||-=.--+.+.+ ++.-++|||||-++|.|.-+-.++..|.++++. |.-+|+.||.+-...-=.-+|+-++
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence            34567899997555555554 566899999999999999999999999999875 9999999999855443346677777


Q ss_pred             CCEE
Q 046954          118 NGEI  121 (146)
Q Consensus       118 ~G~i  121 (146)
                      .+-+
T Consensus       203 ~~g~  206 (233)
T COG3910         203 ESGI  206 (233)
T ss_pred             cCCc
Confidence            6654

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.14  E-value=1.7e-05  Score=62.13  Aligned_cols=84  Identities=24%  Similarity=0.380  Sum_probs=68.3

Q ss_pred             CCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           41 AEISVGQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      ..||-|+.+-+++|.+|.+  .|.++++|||-.+|=|..-..+...+...++. + -||++||....+..+--+-++.-+
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~rLl~~~e~~~v~~~~  346 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSPRLLNAVEEHSVFWLD  346 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCHHHHhhccccceEEec
Confidence            4899999999999999975  67899999999999999999999999998753 4 999999999988766555444445


Q ss_pred             CEEEEeeC
Q 046954          119 GEIVEVLK  126 (146)
Q Consensus       119 G~i~~~g~  126 (146)
                      +..-..|.
T Consensus       347 ~~e~~~ga  354 (373)
T COG4637         347 REEGTFGA  354 (373)
T ss_pred             cccccccc
Confidence            44333443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.11  E-value=1.2e-05  Score=55.70  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCC----------CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTS----------ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      ...+.+..+++..+++...+|+++++|||++          +.|....+.+.+++... ++.+.++|+++|......
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120          66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCccc
Confidence            3455666777888999999999999999995          44555556666665555 446999999999875443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13166 AAA_13: AAA domain

Probab=98.10  E-value=1.7e-05  Score=68.28  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=59.3

Q ss_pred             CcCCCChhHHHHHHHHH--HHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHh
Q 046954           39 TGAEISVGQAQRVALAR--TLAN-------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~--al~~-------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~-~~g~tvi~itH~~~~~~~  108 (146)
                      +...||-|||.-+++|-  |.+.       +..++++|-|.|+||...+..+...|.++.. ....-||+-|||+.+...
T Consensus       497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~  576 (712)
T PF13166_consen  497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE  576 (712)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence            35789999999999986  3334       6789999999999999999999999999851 126899999999887654


Q ss_pred             hc
Q 046954          109 IA  110 (146)
Q Consensus       109 ~~  110 (146)
                      +.
T Consensus       577 l~  578 (712)
T PF13166_consen  577 LK  578 (712)
T ss_pred             HH
Confidence            43

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.01  E-value=7e-07  Score=73.92  Aligned_cols=72  Identities=21%  Similarity=0.393  Sum_probs=55.0

Q ss_pred             hhcCCcCCCChhHHHHHHHH--HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-------
Q 046954           35 FLSKTGAEISVGQAQRVALA--RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------  105 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia--~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-------  105 (146)
                      +.++.+..+|+|++|||.|+  .++...|+..          +..++.+.++++.+++ .|+|+|+++|+++.       
T Consensus       108 ~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~  176 (484)
T TIGR02655       108 LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARY  176 (484)
T ss_pred             HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEecCcccccccccC
Confidence            44455567889999999888  5555555433          5678889999988864 69999999998764       


Q ss_pred             -H-HhhcCeEEEEE
Q 046954          106 -I-QRIADVVCLLV  117 (146)
Q Consensus       106 -~-~~~~d~v~~l~  117 (146)
                       + ..+||.|+.|+
T Consensus       177 ~~~e~laDgVI~L~  190 (484)
T TIGR02655       177 GVEEFVSDNVVILR  190 (484)
T ss_pred             CceeEeeeeEEEEE
Confidence             2 66889999887

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.96  E-value=1.9e-05  Score=64.68  Aligned_cols=87  Identities=18%  Similarity=0.250  Sum_probs=66.8

Q ss_pred             CCCChhHHHHHHHHH-HH----h-cCCC-EEEee-----------------CC--CCCCCHHHHHHHHHHHHHHHH-hcC
Q 046954           41 AEISVGQAQRVALAR-TL----A-NEPE-VLLLD-----------------EP--TSALDPISTQNIEDVLVKLKK-KHG   93 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~-al----~-~~p~-llllD-----------------EP--t~~LD~~~~~~~~~~l~~l~~-~~g   93 (146)
                      .+=|-++|-+...+. ++    . ++-+ ++++|                 ||  |+|+||.....+.+++.++.+ +.|
T Consensus       222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G  301 (438)
T PRK07721        222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG  301 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence            456777777665332 22    1 2333 67778                 75  679999999999999999864 247


Q ss_pred             C-----eEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954           94 M-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL  129 (146)
Q Consensus        94 ~-----tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  129 (146)
                      .     ||++.+||+++  .+||++..+.+|+|+.+++..+
T Consensus       302 sIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        302 SITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             CeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence            5     99999999985  8899999999999998887643

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.87  E-value=0.00013  Score=61.11  Aligned_cols=75  Identities=21%  Similarity=0.296  Sum_probs=61.8

Q ss_pred             CCCChhHHHHHHHHHHH--hcC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           41 AEISVGQAQRVALARTL--ANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al--~~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ..-||||--|+++|.-.  +..  .+.||+||--+|+.-.....|-+.|+++.+  ..-|++|||-+..+. ++|.=+.+
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlPQVAa-~ad~H~~V  506 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLPQVAA-MADTHFLV  506 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHHHHHh-hhcceEEE
Confidence            45799999999998744  333  569999999999999999999999999974  789999999987664 57775555


Q ss_pred             EC
Q 046954          117 VN  118 (146)
Q Consensus       117 ~~  118 (146)
                      ++
T Consensus       507 ~K  508 (557)
T COG0497         507 EK  508 (557)
T ss_pred             EE
Confidence            44

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=1.2e-05  Score=70.24  Aligned_cols=74  Identities=31%  Similarity=0.294  Sum_probs=58.3

Q ss_pred             cCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954           37 SKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV  112 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~  112 (146)
                      ....++||||||-.||++..|+    ..++++||||--|+||......|..+|+.--  .+.-+|+||=--.. ...||+
T Consensus      1077 KeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSLKeGM-F~NANv 1153 (1174)
T KOG0933|consen 1077 KESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSLKEGM-FNNANV 1153 (1174)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEchhhc-cccchh
Confidence            3456799999999999887664    4668999999999999999999999999854  36778888765333 234555


Q ss_pred             E
Q 046954          113 V  113 (146)
Q Consensus       113 v  113 (146)
                      +
T Consensus      1154 L 1154 (1174)
T KOG0933|consen 1154 L 1154 (1174)
T ss_pred             h
Confidence            4

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=97.81  E-value=5.3e-05  Score=66.46  Aligned_cols=50  Identities=26%  Similarity=0.545  Sum_probs=43.8

Q ss_pred             HhcCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           57 LANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        57 l~~~p~llllDEPt~~LD-~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      +-.+|+++++|||+.+|| +..+..+.+.++.+++ .|.+++++||+++.+.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADID  682 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHh
Confidence            346899999999999999 7889999999999865 5999999999998664

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.78  E-value=5.6e-05  Score=67.96  Aligned_cols=77  Identities=26%  Similarity=0.428  Sum_probs=60.9

Q ss_pred             CCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH----HhcCCeEEEEecCHHHHHh--
Q 046954           41 AEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK----KKHGMTIVMVSHSIKQIQR--  108 (146)
Q Consensus        41 ~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~----~~~g~tvi~itH~~~~~~~--  108 (146)
                      +.-|.|||-      |+|+|=.+..+..+|-|||||++||..+..-+...+.++.    ++.+.-.|+||||-.++..  
T Consensus      1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~ 1261 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLG 1261 (1294)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhh
Confidence            356999976      6677888899999999999999999999988887766643    3347889999999888764  


Q ss_pred             ---hcCeEEEEE
Q 046954          109 ---IADVVCLLV  117 (146)
Q Consensus       109 ---~~d~v~~l~  117 (146)
                         ++++++-+.
T Consensus      1262 ~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1262 RSAYPEYFYRVK 1273 (1294)
T ss_pred             hcccchheeeec
Confidence               345556554

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=97.71  E-value=0.00022  Score=62.97  Aligned_cols=69  Identities=25%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             CCCChhHHHHHHHHHHHhc--CCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954           41 AEISVGQAQRVALARTLAN--EPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV  112 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~--~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~  112 (146)
                      ..+|.-+.....++.+|-.  ++.++|+|||   |+.+|.  ....+.++..+.+..|.+++++||.. ++..++++
T Consensus       665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~-el~~l~~~  738 (854)
T PRK05399        665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYH-ELTELEEK  738 (854)
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechH-HHHHHhhh
Confidence            4567777888888888765  9999999999   888883  33456667777654468999999994 55566765

>TIGR00152 dephospho-CoA kinase

Probab=97.67  E-value=3e-05  Score=56.29  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--HHhhcCeEEEEECCE
Q 046954           45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--IQRIADVVCLLVNGE  120 (146)
Q Consensus        45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--~~~~~d~v~~l~~G~  120 (146)
                      .|+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+.+... .|.+|++.+|.+.+  ...+||+++++..+.
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~  134 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLDVPLLFENKLRSLCDRVIVVDVSP  134 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence            488999999999999999988887  78999999999999988753 46799999999965  778999999988763

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=97.63  E-value=0.00019  Score=62.99  Aligned_cols=52  Identities=25%  Similarity=0.505  Sum_probs=45.6

Q ss_pred             HHhcCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954           56 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR  108 (146)
Q Consensus        56 al~~~p~llllDEPt~~LD-~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~  108 (146)
                      .+..+|.++++|||...|| +.....+.+.++.+++ .|.+++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence            3457899999999999999 8889999999999865 58999999999988654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=8.6e-05  Score=65.94  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=64.4

Q ss_pred             CcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           39 TGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      .+..||||+|-.-+||..++.    ..++++|||--|+||..+.-.+...|++..  .+.-+|+||=.-+ ..++++|.+
T Consensus      1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT--kNAQFIIISLRnn-MFELa~rLv 1268 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT--KNAQFIIISLRNN-MFELANRLV 1268 (1293)
T ss_pred             hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc--cCCeEEEEEehhh-HHHHHhhhe
Confidence            468999999999999998873    568999999999999999999999999854  4788999988754 456899977


Q ss_pred             EEE
Q 046954          115 LLV  117 (146)
Q Consensus       115 ~l~  117 (146)
                      -+.
T Consensus      1269 GIY 1271 (1293)
T KOG0996|consen 1269 GIY 1271 (1293)
T ss_pred             eeE
Confidence            664

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=97.42  E-value=0.0006  Score=54.53  Aligned_cols=76  Identities=29%  Similarity=0.398  Sum_probs=61.7

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           41 AEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      ...|-||++-+++|.-|+         ..++|||||+-+|-||+.-+..+++. ..    .+.-+++++-+.+.+...-.
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~----~~~Q~fvT~t~~~~~~~~~~  348 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE----LGVQVFVTTTDLEDIDDNLD  348 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc----cCCeEEEEccCHHHhhhhhh
Confidence            468999999999988775         47899999999999999999999988 32    26677777777777774444


Q ss_pred             ---eEEEEECCEE
Q 046954          112 ---VVCLLVNGEI  121 (146)
Q Consensus       112 ---~v~~l~~G~i  121 (146)
                         +++.+.+|+|
T Consensus       349 ~~~~~f~V~~g~i  361 (363)
T COG1195         349 ENAQMFHVEDGKI  361 (363)
T ss_pred             ccceEEEEeccee
Confidence               6888888886

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.42  E-value=8.8e-05  Score=58.10  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcc
Q 046954           50 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD  128 (146)
Q Consensus        50 rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~-tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~  128 (146)
                      .-.+..+|-.+|+++++|||.+       ....++++.+..  |. +++.++|..+ +....+|+..|..|++...|.+.
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~--g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~  277 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT--GHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDF  277 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc--CCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCH
Confidence            3467778999999999999996       345666776653  54 5699999988 55668999999999888777766


Q ss_pred             cc
Q 046954          129 LL  130 (146)
Q Consensus       129 ~~  130 (146)
                      +.
T Consensus       278 ~~  279 (308)
T TIGR02788       278 AY  279 (308)
T ss_pred             HH
Confidence            54

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.20  E-value=0.0019  Score=52.74  Aligned_cols=81  Identities=22%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH---------------HHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS---------------TQNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~---------------~~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      .+=||-.-|=..|.-||=..+++||+||=|++--.--               ..-+.+.++.+.++.|.+.|+|+=-...
T Consensus       321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd  400 (448)
T PF09818_consen  321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD  400 (448)
T ss_pred             cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence            3569999999999999999999999999999753332               3334666777777789999999988888


Q ss_pred             HHhhcCeEEEEECCEE
Q 046954          106 IQRIADVVCLLVNGEI  121 (146)
Q Consensus       106 ~~~~~d~v~~l~~G~i  121 (146)
                      ....||+|+.|++=+-
T Consensus       401 y~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  401 YFDVADRVIMMDEYRP  416 (448)
T ss_pred             hHhhCCEEEEecCccc
Confidence            9999999999988654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.14  E-value=0.00069  Score=49.68  Aligned_cols=56  Identities=20%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +++++|..+|+++++|||.   |+.....+.    +.+. .|..++.++|..+.. ...+|++.+
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G~~v~~t~Ha~~~~-~~~~Rl~~l  121 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TGHLVMSTLHTNSAA-KTIDRIIDV  121 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cCCEEEEEecCCcHH-HHHhHHHhh
Confidence            5788999999999999996   555433333    3343 499999999998755 456777655

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.09  E-value=0.00058  Score=55.92  Aligned_cols=82  Identities=20%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             CcCCCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           39 TGAEISVGQAQRVALARTLA-------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al~-------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      ...+.|.|+|+|++.+.+.+       .++-++++|+||...|+.  +++...+.+... .|.+..+.||.....    +
T Consensus       218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~L~----E  290 (432)
T PRK06793        218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKKLL----E  290 (432)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchhHH----H
Confidence            35788999999999999887       789999999999999996  666666666653 388888888854444    4


Q ss_pred             eEEEEECCEEEEeeCc
Q 046954          112 VVCLLVNGEIVEVLKP  127 (146)
Q Consensus       112 ~v~~l~~G~i~~~g~~  127 (146)
                      |.-..+.|.|...++.
T Consensus       291 Rag~~~~GSiT~~~tv  306 (432)
T PRK06793        291 RSGKTQKGSITGIYTV  306 (432)
T ss_pred             HhccCCCcceEEEEEE
Confidence            4444578998765543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.05  E-value=0.00083  Score=53.11  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=37.8

Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           64 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        64 lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      +++|||+.+||+.++..+.+.|.+..  .+.++|++||+++.+...
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t  159 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT  159 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence            55789999999999999999999974  378999999999866543

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.0018  Score=57.36  Aligned_cols=77  Identities=21%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             CCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954           38 KTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV  113 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v  113 (146)
                      ++...||||+|--.++|.-++.    .+++.+|||--|+||-.+...+...|+   . .+.-+|+||=-..+.. -+|-.
T Consensus      1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~-~~~Q~IvISLK~~~y~-kadaL 1121 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---S-SNFQFIVISLKEEFYQ-KADAL 1121 (1141)
T ss_pred             CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---c-CCceEEEEeccHHHhh-hhhce
Confidence            4567899999999999998874    358999999999999999999999988   2 3788888888766554 47877


Q ss_pred             EEEECC
Q 046954          114 CLLVNG  119 (146)
Q Consensus       114 ~~l~~G  119 (146)
                      +-+-.+
T Consensus      1122 VGvyr~ 1127 (1141)
T KOG0018|consen 1122 VGVYRD 1127 (1141)
T ss_pred             eeeccC
Confidence            666544

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.88  E-value=0.0036  Score=52.49  Aligned_cols=69  Identities=20%  Similarity=0.323  Sum_probs=57.5

Q ss_pred             CCChhHHHHHHHHHHHh---cCC-----CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           42 EISVGQAQRVALARTLA---NEP-----EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~---~~p-----~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      .||-|++.-++++-=|+   -+|     +++++|.|.+++|..........++..+. +++-|++-||+-.++..+.+
T Consensus       529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHntYF~rd~~~  605 (758)
T COG4694         529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHNTYFYRDITL  605 (758)
T ss_pred             cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEeccceehHHHHh
Confidence            49999999888765443   344     58899999999999999999999999986 59999999999777665543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.70  E-value=0.0032  Score=51.73  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=52.3

Q ss_pred             cCCCEEEeeCCCCCCCHH-HHHHHHHHHHHHHHhcCCeEEEEe-cCHHHHHhhcCeEE-EEECCEEEEeeCcc
Q 046954           59 NEPEVLLLDEPTSALDPI-STQNIEDVLVKLKKKHGMTIVMVS-HSIKQIQRIADVVC-LLVNGEIVEVLKPD  128 (146)
Q Consensus        59 ~~p~llllDEPt~~LD~~-~~~~~~~~l~~l~~~~g~tvi~it-H~~~~~~~~~d~v~-~l~~G~i~~~g~~~  128 (146)
                      .+|++|++|||...+|.. .+..++..+..+.+ .|+.+|+++ |++..+..+.+|+. -+..|-++...+|+
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd  264 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence            479999999999988765 45778899988865 477777766 88888877777765 36677776665664

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.68  E-value=0.0029  Score=46.95  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=44.0

Q ss_pred             cCCCEEEeeC-----CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC---------HHHHHhhcCeEEEEE
Q 046954           59 NEPEVLLLDE-----PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS---------IKQIQRIADVVCLLV  117 (146)
Q Consensus        59 ~~p~llllDE-----Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~---------~~~~~~~~d~v~~l~  117 (146)
                      .+++.+++|-     |+.+.|...+..+.++++.+++ .|.|+++++|.         +..+..+||.|++|+
T Consensus       106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            4789999993     2334455667788888888864 69999999995         244678899999995

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF13514 AAA_27: AAA domain

Probab=96.62  E-value=0.0068  Score=55.12  Aligned_cols=67  Identities=19%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             CcCCCChhHHH------HHHHHHHH-hcCCCE-EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           39 TGAEISVGQAQ------RVALARTL-ANEPEV-LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        39 ~~~~LSgG~~q------rv~ia~al-~~~p~l-lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      ++..||.|.+=      |++++..+ ..++++ +|+|+||.+.|..-...++++|.++++  ..-||+-||+...+.
T Consensus      1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~--~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSR--RRQVIYFTCHEHLVE 1096 (1111)
T ss_pred             eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhcc--CCeEEEEeccHHHHH
Confidence            45689999965      55555555 345554 999999999999999999999999975  568888888866553

>PF00488 MutS_V: MutS domain V C-terminus

Probab=96.44  E-value=0.037  Score=41.81  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             CCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHHhcCCeEEEEecCHHHH
Q 046954           41 AEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~~~~l~~-l~~~~g~tvi~itH~~~~~  106 (146)
                      ..+|.=+.-...++..+  +.+..++|+||+..|=++.....+...+.+ +.+..+..++++||..+..
T Consensus       101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~  169 (235)
T PF00488_consen  101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA  169 (235)
T ss_dssp             TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred             cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence            34665555555555555  456779999999999999999888666555 4432488999999998753

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=96.42  E-value=0.011  Score=48.21  Aligned_cols=82  Identities=13%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH----------HHHHHHHHHHHHhc--CCeEEEEecCHHHHHh
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST----------QNIEDVLVKLKKKH--GMTIVMVSHSIKQIQR  108 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~----------~~~~~~l~~l~~~~--g~tvi~itH~~~~~~~  108 (146)
                      ..=||-+.+-..|=+++=...+.+++||=+++-..-.+          +.+..+..+.....  +.++|.+|--++....
T Consensus       319 gdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla  398 (554)
T COG3044         319 GDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLA  398 (554)
T ss_pred             CCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhh
Confidence            46799999999999999999999999999987643322          22333333332222  4899999999999999


Q ss_pred             hcCeEEEEECCEEE
Q 046954          109 IADVVCLLVNGEIV  122 (146)
Q Consensus       109 ~~d~v~~l~~G~i~  122 (146)
                      .+||+++|++-+-.
T Consensus       399 ~aDRaIvMeDhrpk  412 (554)
T COG3044         399 VADRAIVMEDHRPK  412 (554)
T ss_pred             hcceEEEecccCcc
Confidence            99999999998744

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.29  E-value=0.064  Score=35.21  Aligned_cols=62  Identities=32%  Similarity=0.362  Sum_probs=48.8

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-----HHHHHHHhcCCeEEEEecC
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-----~l~~l~~~~g~tvi~itH~  102 (146)
                      ...++++..+..+.++-..+|.++++||+..-.+.........     .........+..+|+++|.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            4567888888899999988899999999999999998887765     1222233457889999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.28  E-value=0.017  Score=42.91  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=40.5

Q ss_pred             CCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------HHHhhcCeEEEEE
Q 046954           60 EPEVLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLV  117 (146)
Q Consensus        60 ~p~llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------~~~~~~d~v~~l~  117 (146)
                      +|+.+++|-|+.-+  ++...+.+...+.++.++.|+|+++++|...        .+..+||.|+.|+
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            57888999887643  4444455555555555567999999999643        2456788888887

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00416 sms DNA repair protein RadA

Probab=96.20  E-value=0.011  Score=48.95  Aligned_cols=62  Identities=19%  Similarity=0.396  Sum_probs=46.9

Q ss_pred             cCCCEEEeeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------HHhhcCeEEEEECCE
Q 046954           59 NEPEVLLLDEPTSAL---------DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVNGE  120 (146)
Q Consensus        59 ~~p~llllDEPt~~L---------D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--------~~~~~d~v~~l~~G~  120 (146)
                      .+|+++++|.-++-.         +....+.+...|.+++++.|.|+++++|....        +..++|.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            589999999765422         12335566667888878889999999996543        677899999998664

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13764 ATPase; Provisional

Probab=96.11  E-value=0.034  Score=47.55  Aligned_cols=64  Identities=25%  Similarity=0.382  Sum_probs=49.3

Q ss_pred             HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---------------CHHHHHhhcCeEEEEECC
Q 046954           55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---------------SIKQIQRIADVVCLLVNG  119 (146)
Q Consensus        55 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---------------~~~~~~~~~d~v~~l~~G  119 (146)
                      .+|.++|+++++||.=.   ..+    ++++..++. .|..++-+-|               ++..+..++|+|+++++|
T Consensus       319 ~lLR~rPD~IivGEiRd---~Et----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G  390 (602)
T PRK13764        319 ILLLVRPDYTIYDEMRK---TED----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDG  390 (602)
T ss_pred             HHHhhCCCEEEECCCCC---HHH----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCC
Confidence            34789999999999974   332    444444443 3888999999               888899999999999999


Q ss_pred             EE--EEeeC
Q 046954          120 EI--VEVLK  126 (146)
Q Consensus       120 ~i--~~~g~  126 (146)
                      +|  +++++
T Consensus       391 ~I~~v~~~~  399 (602)
T PRK13764        391 EVSKVYDLE  399 (602)
T ss_pred             EEEEEEeee
Confidence            99  44444

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.98  E-value=0.026  Score=42.94  Aligned_cols=71  Identities=23%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHh--cCCCEEEeeCCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEecCHH-------------
Q 046954           48 AQRVALARTLA--NEPEVLLLDEPTSALDPI--------STQNIEDVLVKLKKKHGMTIVMVSHSIK-------------  104 (146)
Q Consensus        48 ~qrv~ia~al~--~~p~llllDEPt~~LD~~--------~~~~~~~~l~~l~~~~g~tvi~itH~~~-------------  104 (146)
                      ...+..++.++  .+|+++++|.++.-.+..        ....+...|+.++++.|+||++++|--.             
T Consensus       126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~  205 (271)
T cd01122         126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEV  205 (271)
T ss_pred             HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCc
Confidence            34445555554  479999999876644331        2346667788888888999999998421             


Q ss_pred             ---------HHHhhcCeEEEEEC
Q 046954          105 ---------QIQRIADVVCLLVN  118 (146)
Q Consensus       105 ---------~~~~~~d~v~~l~~  118 (146)
                               .+...||-|+.|+.
T Consensus       206 ~~~d~~gs~~i~~~aD~vi~l~r  228 (271)
T cd01122         206 SLSDFRGSAAIGQLADNVIALER  228 (271)
T ss_pred             eEEeccCcHhHhhhccEEEEEEe
Confidence                     46678899998864

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.93  E-value=0.0089  Score=53.31  Aligned_cols=76  Identities=22%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             cCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEEecCHHHHHhhcCeEE
Q 046954           40 GAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT-IVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t-vi~itH~~~~~~~~~d~v~  114 (146)
                      ...||||||--+.+|..|    +...++..|||----+|..+++..+++|.+.+.+.+.- |+++=||+..+.. .|.|.
T Consensus       987 ~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~-~~~i~ 1065 (1074)
T KOG0250|consen  987 TRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNS-DDGIV 1065 (1074)
T ss_pred             ccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcc-ccceE
Confidence            468999999988888777    46889999999999999999999999999998776654 4555577877754 34444


Q ss_pred             EE
Q 046954          115 LL  116 (146)
Q Consensus       115 ~l  116 (146)
                      +.
T Consensus      1066 v~ 1067 (1074)
T KOG0250|consen 1066 VF 1067 (1074)
T ss_pred             Ee
Confidence            43

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.79  E-value=0.061  Score=46.71  Aligned_cols=74  Identities=22%  Similarity=0.336  Sum_probs=55.3

Q ss_pred             CCCChhHHHHHH---HHHHHh--------cCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC--HHH
Q 046954           41 AEISVGQAQRVA---LARTLA--------NEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS--IKQ  105 (146)
Q Consensus        41 ~~LSgG~~qrv~---ia~al~--------~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~--~~~  105 (146)
                      ..+|||||++++   +|.+|.        ..|  ..+||||.|+--|+.....++..+.++    |.-.+++|-.  +..
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~iTPlk~I~~ 1064 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFITPLKEIRL 1064 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEechHHHHHH
Confidence            579999999986   455553        234  379999999999999999999998765    7778888864  445


Q ss_pred             HHhhcCeEEEEEC
Q 046954          106 IQRIADVVCLLVN  118 (146)
Q Consensus       106 ~~~~~d~v~~l~~  118 (146)
                      +..+...+++.++
T Consensus      1065 l~~~v~S~ivVh~ 1077 (1104)
T COG4913        1065 LRHHVRSAIVVHR 1077 (1104)
T ss_pred             HHhhccceEEEec
Confidence            5566656666654

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=95.77  E-value=0.066  Score=47.55  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=46.9

Q ss_pred             CCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           42 EISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      .+|.=+.-...++..|  +.++.++|+||+..|-|+.....+...+ ..+.+..|..++++||..+.. .++
T Consensus       651 g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~-~l~  721 (840)
T TIGR01070       651 GRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT-ALE  721 (840)
T ss_pred             CcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH-HHh
Confidence            3454445555556555  5788999999998888887777765544 444432588999999997654 344

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.69  E-value=0.012  Score=49.18  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             cCCCEEEee---CCCCCCCHHH--HHHHHHHHHHHHHhcCCeEEEEecCHH---------HHHhhcCeEEEEE
Q 046954           59 NEPEVLLLD---EPTSALDPIS--TQNIEDVLVKLKKKHGMTIVMVSHSIK---------QIQRIADVVCLLV  117 (146)
Q Consensus        59 ~~p~llllD---EPt~~LD~~~--~~~~~~~l~~l~~~~g~tvi~itH~~~---------~~~~~~d~v~~l~  117 (146)
                      .+|+.+++|   .|++++|...  +..+.+++..++ +.|+|+|+++|...         ....+||.|+.|+
T Consensus       129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~  200 (509)
T PRK09302        129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK-QKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR  200 (509)
T ss_pred             hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH-hCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence            589999999   4667788766  677888877775 46999999999864         2345789999997

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=95.65  E-value=0.047  Score=38.93  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=51.0

Q ss_pred             HHHHHHHHh--cCCCEEEeeCCCCC--CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC
Q 046954           50 RVALARTLA--NEPEVLLLDEPTSA--LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN  118 (146)
Q Consensus        50 rv~ia~al~--~~p~llllDEPt~~--LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~  118 (146)
                      -...|+..+  .+.++++|||-...  ++......+.++|+..  ..+..+|++.+++. .+.++||.|--|+.
T Consensus        83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r--p~~~evIlTGr~~p~~l~e~AD~VTEm~~  154 (159)
T cd00561          83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK--PEDLELVLTGRNAPKELIEAADLVTEMRE  154 (159)
T ss_pred             HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCceeeecce
Confidence            334445444  45799999999876  6667788899988763  34889999999955 58889999988865

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.42  E-value=0.051  Score=43.22  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      +++++|-++|+++++||+.   |+.+....++.    + ..|++++.+.|-.+.
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~~  232 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNSA  232 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCCH
Confidence            5778899999999999997   88877654442    3 359999999998443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=95.37  E-value=0.045  Score=39.16  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHH--HHHHHhc-CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVA--LARTLAN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKK   91 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~--ia~al~~-~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~   91 (146)
                      .+.++++..++.--+...++..+|+|++|++.  +++.+-. +++++    |+|++|..+...+.+.|.++.++
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence            34556666665422344567789999999877  5555543 34443    99999999999999999987653

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.26  E-value=0.092  Score=42.39  Aligned_cols=63  Identities=17%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             hcCCCEEEeeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------HHHhhcCeEEEEECCE
Q 046954           58 ANEPEVLLLDEPTS----ALD-----PISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLVNGE  120 (146)
Q Consensus        58 ~~~p~llllDEPt~----~LD-----~~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------~~~~~~d~v~~l~~G~  120 (146)
                      -.+|+++++|+-.+    .+|     ....+.+...|.+++++.|.+++++.|-..        .++.++|.|+.++.++
T Consensus       156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~  235 (372)
T cd01121         156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  235 (372)
T ss_pred             hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence            35999999999533    222     234456667777888888999999998432        3688899999997553

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.18  E-value=0.018  Score=53.79  Aligned_cols=58  Identities=22%  Similarity=0.420  Sum_probs=44.2

Q ss_pred             cCCCChhHHHHHHHHHHHh--------c--------CC-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954           40 GAEISVGQAQRVALARTLA--------N--------EP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~--------~--------~p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      .+.||||||.....+..++        .        -| .+|+|||. +++|..+...++++++.+    |.-.||+|-.
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~tP~ 1437 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAAPE 1437 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEechh
Confidence            5789999998877766554        2        22 45699999 999999999999998743    6666666643

>PRK04296 thymidine kinase; Provisional

Probab=95.10  E-value=0.18  Score=36.63  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=39.7

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC---------H-HHHHhhcCeEEEEE
Q 046954           59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS---------I-KQIQRIADVVCLLV  117 (146)
Q Consensus        59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~---------~-~~~~~~~d~v~~l~  117 (146)
                      .+++++++||-- -++.   +++.++++.++ ..|++||++.++         . ..+..+||.|..|+
T Consensus        77 ~~~dvviIDEaq-~l~~---~~v~~l~~~l~-~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~  140 (190)
T PRK04296         77 EKIDCVLIDEAQ-FLDK---EQVVQLAEVLD-DLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK  140 (190)
T ss_pred             CCCCEEEEEccc-cCCH---HHHHHHHHHHH-HcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence            478999999992 2443   33566666655 459999999999         3 35678899998774

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.03  E-value=0.1  Score=43.15  Aligned_cols=59  Identities=17%  Similarity=0.423  Sum_probs=44.6

Q ss_pred             cCCCEEEeeCCCCCCC---------HHHHHHHHHHHHHHHHhcCCeEEEEecC--------HHHHHhhcCeEEEEE
Q 046954           59 NEPEVLLLDEPTSALD---------PISTQNIEDVLVKLKKKHGMTIVMVSHS--------IKQIQRIADVVCLLV  117 (146)
Q Consensus        59 ~~p~llllDEPt~~LD---------~~~~~~~~~~l~~l~~~~g~tvi~itH~--------~~~~~~~~d~v~~l~  117 (146)
                      .+|+++++|+.++-..         ....+.+...|.+++++.|.++++++|-        ...+..++|.|+.++
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le  230 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE  230 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence            5899999999875432         2234556666778877889999999994        234788899999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-19
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-19
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		7e-19
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		8e-16
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		9e-16
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		6e-15
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		7e-14
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		9e-14
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-13
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-13
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-12
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		1e-12
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		1e-12
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-12
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		5e-12
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		5e-12
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-12
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		6e-12
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-12
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		9e-12
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		1e-11
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		6e-11
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		7e-11
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		8e-11
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		9e-11
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		9e-11
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		1e-10
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-10
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		3e-10
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		6e-10
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-09
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-09
1g29_1	372	Malk Length = 372		1e-09
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-09
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-09
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-09
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-09
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		4e-09
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		5e-09
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-09
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		6e-09
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		6e-09
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		9e-09
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		1e-08
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		1e-08
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-08
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-08
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		4e-08
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		6e-08
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		7e-08
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		7e-08
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-07
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-07
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		8e-07
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		8e-07
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-06
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-06
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-06
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-06
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-06
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		2e-06
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		2e-06
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		2e-06
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		3e-06
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		8e-06
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		8e-06
1yqt_A	538	Rnase-L Inhibitor Length = 538		9e-06
3ux8_A	670	Crystal Structure Of Uvra Length = 670		3e-05
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		3e-05
2r6f_A	972	Crystal Structure Of Bacillus Stearothermophilus Uv		4e-05
3uwx_A	972	Crystal Structure Of Uvra-Uvrb Complex Length = 972		5e-05
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		9e-05
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		1e-04
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		3e-04

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           + +S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L  + ++ G+TI++++
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
           H +  ++RI D V ++ NGE++E     ++ S  K P+A +F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           + +S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L  + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
           H +  ++RI D V ++ NGE++E     ++ S  K P+A +F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           + +S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L  + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
           H    ++RI D V ++ NGE++E     ++ S  K P+A +F+Q
Sbjct: 222 HEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQAQRVA+AR LA EP+++L DEPTSALDP     +  V+ +L  + GMT+V+V+H 
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE 218
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 142
           +   + + D V  +  G I+E  KP DL    +H     FL
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQAQRVA+AR LA EP+++L DEPTSALDP     +  V+ +L  + GMT+V+V+H 
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE 197
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 142
           +   + + D V  +  G I+E  KP DL    +H     FL
Sbjct: 198 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 238

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 64/90 (71%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ QRVALAR L   P++LLLDEP SALDP + +N  ++L  L KK+ +T++ ++H 
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
             + + +AD + ++++G++++V KP+ + E
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S GQ QRVALAR L  +P +LLLDEP S LD     +   ++ +++ + G+T+++VSH
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 146
               I  IAD V +LV G++V+V KP+ L +  +P++++   L G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR L  EPEVLLLDEP S LD +    +   L +L+K+ G+T V V+H
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPD 128
              +   +AD + ++  GEI++V  PD
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPD 219

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR LAN P ++L DEPT ALD  + + I  +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
            I  + R  + +  L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S  Q QRVALAR L  +P +LLLDEP S LD     +   ++ +++ + G+T+++VSH
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 146
               I  IAD V +LV G++V+V KP+ L +  +P++++   L G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR LAN P ++L D+PT ALD  + + I  +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
            I  + R  + +  L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ +RVA+A  L  EP+VL+LDEPT+ LDP+    I  +LV+++K+ G+TI++ +H 
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 103 IKQIQRIADVVCLLVNGEIV 122
           I  +    D V ++  G ++
Sbjct: 204 IDIVPLYCDNVFVMKEGRVI 223

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR LAN P ++L D+PT ALD  + + I  +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
            I  + R  + +  L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 1   TVADNIRYGPQLRGKKLTENEV---YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTL 57
           TV DN+ +G  LR K++ ++E+    +             +   E+S GQ QRVALAR L
Sbjct: 103 TVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL 160
Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A  P+VLL DEP +A+D    + +   + ++  + G+T V V+H  ++   +AD V +L 
Sbjct: 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH 220
Query: 118 NGEIVEVLKPDLLSE 132
            G + +   P+ + E
Sbjct: 221 EGNVEQFGTPEEVYE 235

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1   TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
           +VA+N+ +G +L G KK   N+                +    +S GQ QRVA+ RTL  
Sbjct: 91  SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
           EP V LLDEP S LD      +   + +L K+ G T++ V+H   +   +AD + +L  G
Sbjct: 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
            + +V KP    E  H  A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1   TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
           +VA+N+ +G +L G KK   N+                +    +S GQ QRVA+ RTL  
Sbjct: 91  SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
           EP V LLDEP S LD      +   + +L K+ G T++ V+H   +   +AD + +L  G
Sbjct: 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
            + +V KP    E  H  A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 40   GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
            G ++S GQ QR+A+AR L  +P +LLLDE TSALD  S + +++ L   K + G T +++
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRTCIVI 1226
Query: 100  SHSIKQIQRIADVVCLLVNGEIVE 123
            +H +  IQ  AD++ ++ NG++ E
Sbjct: 1227 AHRLSTIQN-ADLIVVIQNGKVKE 1249

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           K    +S GQ QRV++AR LA EP+VLL DEPTSALDP     +  ++ +L ++ G T+V
Sbjct: 149 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMV 207
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQLS 145
           +V+H +   + ++  V  L  G+I E   P+ +    + P   +FL+ S
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGS 256

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 40   GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
            G ++S GQ QR+A+AR L  +P +LLLDE TSALD  S + +++ L   K + G T +++
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRTCIVI 1226
Query: 100  SHSIKQIQRIADVVCLLVNGEIVE 123
            +H +  IQ  AD++ ++ NG++ E
Sbjct: 1227 AHRLSTIQN-ADLIVVIQNGKVKE 1249

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G ++S GQ QR+A+AR L   P++LLLDE TSALD  S   ++  L K  K  G T +++
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIII 609
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEV 124
           +H +  I R AD++    NG++VEV
Sbjct: 610 AHRLSTI-RNADLIISCKNGQVVEV 633

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1   TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
           +VA+N+ +G +L G KK   N+                +    +S GQ QRVA+ RTL  
Sbjct: 91  SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
           EP V LLD+P S LD      +   + +L K+ G T++ V+H   +   +AD + +L  G
Sbjct: 151 EPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
            + +V KP    E  H  A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G+ QRVA+AR LANEP +L  DEPT  LD  +T+ + D+ +K+  + G +IVMV+H
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTH 198

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 196
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 197 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 196
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 197 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 195 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 201 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 41  AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
           A +S G+ QRVALAR L  +P +LLLDEP SA+D  +   + + L  ++++  + I+ V+
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
           H + +   +AD V +++NG IVE  K   L  AK+     FL 
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ D+ TSALD  S   I   + K+ K  G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 201 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G  +S GQ QRVA+AR L  +  VL+LDE TSALD  S + I+  L +L+K    T++
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK--TVL 533
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +++H +  I++ AD + ++  GEI+E  +  DLL++
Sbjct: 534 VIAHRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQ 568

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 1   TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
           TV +NI +   LR ++++++EV K                +   ++S GQ QRVALAR L
Sbjct: 91  TVFENIAF--PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL 148
Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
             +P+VLL DEP S LD      +   +  L+++ G+T V V+H   +   +A  + +  
Sbjct: 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN 208
Query: 118 NGEIVEVLKPDLLSEAKHPM 137
            G++V+   PD + ++   M
Sbjct: 209 QGKLVQYGTPDEVYDSPKNM 228

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G  +S GQ QR+A+AR L   P++LLLDE TSALD  +   +++ L +L    G T++
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVL 567
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +++H +  I+  A++V +L  G+I E  K  +LLS+
Sbjct: 568 VIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 602

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G ++S GQ QR+++AR   N P +L+LDE TSALD  S   I++ L  L K    T ++V
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIV 532
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
           +H +  I   AD + ++ NG IVE
Sbjct: 533 AHRLSTITH-ADKIVVIENGHIVE 555

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S GQ QRVAL R +  +P+V L+DEP S LD      +   L KL+++ G+T + V+H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPD 128
              +   + D + ++  G + +V  PD
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPD 225

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +  +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 195 AARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           GA +S GQ QR+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +  +  ++  AD + ++  G+IVE  K  +LLSE
Sbjct: 201 AARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G  +S GQ QR+A+AR L   P++LLLDE TSALD  +   +++ L +L    G T++++
Sbjct: 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVI 538
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
           +H +  I+  A++V +L  G+I E  K  +LLS+
Sbjct: 539 AHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G ++S GQ Q +A+ R     P++L+LDE TS +D  + ++I+  + KL +  G T +++
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIII 546
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
           +H +  I+  AD++ +L +GEIVE+ K D L + +
Sbjct: 547 AHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKR 580

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 1   TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXX------XXXXKTGAEISVGQAQRVALA 54
           T+ADNIRYG    G    E                        + G ++S G+ QRVA+A
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           RT+   P ++LLDE TSALD  + + I+  L K+      T ++V+H +  +   AD + 
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTIVVAHRLSTVVN-ADQIL 259
Query: 115 LLVNGEIVE 123
           ++ +G IVE
Sbjct: 260 VIKDGCIVE 268

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S GQ Q + +AR +A+E +++LLDEPTSALD  +   +  +L+ L +   MT+V  +H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 102 SIKQIQRIADVVCLLVN-----GEIVEVLKPDLLSEAKH-PM 137
              Q+  IA+   LL       GE   +L  + L+   H PM
Sbjct: 188 QPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPM 229

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 44  SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
           S G  +++ +AR L   P + +LDEPTS LD ++ + +  +L K   + G+TI++ SH++
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL-KQASQEGLTILVSSHNM 206
Query: 104 KQIQRIADVVCLLVNGEIVE 123
            +++ + D + L+ NG IVE
Sbjct: 207 LEVEFLCDRIALIHNGTIVE 226

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1   TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
           TV +NI +   L+ KK  ++E+ K                +  A++S GQ QRVA+AR +
Sbjct: 99  TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 156
Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
             EP+VLL+DEP S LD      +   + KL++K  +T + V+H   +   + D + ++ 
Sbjct: 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 216
Query: 118 NGEIVEVLKP 127
            G+++++  P
Sbjct: 217 RGQLLQIGSP 226

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1   TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
           TV +NI +   L+ KK  ++E+ K                +  A++S GQ QRVA+AR +
Sbjct: 100 TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 157
Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
             EP+VLL+DEP S LD      +   + KL++K  +T + V+H   +   + D + ++ 
Sbjct: 158 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 217
Query: 118 NGEIVEVLKP 127
            G+++++  P
Sbjct: 218 RGQLLQIGSP 227

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 1   TVADNIRYGPQLRGKKLTENEVYKXXXXXXXX---XXXXXKTGAEISVGQAQRVALARTL 57
           TV DNI +  +LR  K+ + E+ K                +   E+S GQ QRVAL R +
Sbjct: 100 TVYDNIAFPLKLR--KVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAI 157
Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
              P+V L DEP S LD          L KL+++ G+T + V+H   +     D + +  
Sbjct: 158 IRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXN 217
Query: 118 NGEIVEVLKPD 128
            GE+ +V  PD
Sbjct: 218 KGELQQVGTPD 228

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G +IS GQ QR+A+AR     P++L+LDE T++LD  S   ++  L  L K  G T +++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVI 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142
           +H +  I   AD +  +  G+I    K + L  A HP+  +++
Sbjct: 195 AHRLSTIVD-ADKIYFIEKGQITGSGKHNELV-ATHPLYAKYV 235

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G+++S GQ Q VALAR L  +P VL+LD+ TSALD  S   +E +L +  +++  +++
Sbjct: 150 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 209
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++  +  +++ AD +  L  G I E
Sbjct: 210 LITQHLSLVEQ-ADHILFLEGGAIRE 234

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G  +S GQ QR+A+AR L  +  +L+LDE TSALD  S + I+  L +L+K    T +
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSL 533
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++H +  I++ AD + ++ +G IVE
Sbjct: 534 VIAHRLSTIEK-ADEIVVVEDGVIVE 558

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G  +S GQ QR+A+AR L  +  +L+LDE TSALD  S + I+  L +L+K    T +
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSL 533
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++H +  I++ AD + ++ +G IVE
Sbjct: 534 VIAHRLSTIEQ-ADEIVVVEDGIIVE 558

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S GQ QR+A+A  LA +   L LDEP S LDP S + I  VL  LK + G  I++V+H 
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE-GKGIILVTHE 199
Query: 103 IKQIQRIADVVCLLVNGEI 121
           ++ +  + D +  + NG I
Sbjct: 200 LEYLDDM-DFILHISNGTI 217

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 43  ISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96
           +S G+ QRV LAR LA        P  L LDEPTSALD    Q+   +L +L ++  + +
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 97  VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128
             V H +      AD + LL  G++V    P+
Sbjct: 202 CCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           G ++S G+ QR+A+AR L  +P++++ DE TS+LD  +    +  +  L+K    T++++
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLIII 210
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
           +H +  I   A+ + LL  G+IVE
Sbjct: 211 AHRLSTISS-AESIILLNKGKIVE 233

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G  QRV +A  L  +P VL+LDEPTSALD ++  +I  +L +LKK   +T++ V+H
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTH 213
Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
            I     +AD V ++  G +VE
Sbjct: 214 DIAVAAELADKVAVIYGGNLVE 235

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +TG ++S GQ Q VALAR L  +P +L+LD+ TSALD  +   ++ +L +  +    T++
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++H +   +R A  +  L  G + E
Sbjct: 212 LITHQLSLAER-AHHILFLKEGSVCE 236

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           + G   S GQ QR+++AR L  +P+VL+LD+ TS++DPI+ + I D L +  K  G T  
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTF 532
Query: 98  MVSHSIKQIQRIADVVCLLVNGEI 121
           +++  I     +AD + +L  G++
Sbjct: 533 IITQKIPT-ALLADKILVLHEGKV 555

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +TG +++VGQ Q VALAR L  +P +L+LD  TSALD  +   ++ +L +  +    T++
Sbjct: 152 ETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++  +   +R A  +  L  G + E
Sbjct: 212 LITQQLSLAER-AHHILFLKEGSVCE 236

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +   E+S GQ + V + R L   P+++++DEP + + P    +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIV 122
           ++ H +  +    D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +   E+S GQ + V + R L   P+++++DEP + + P    +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIV 122
           ++ H +  +    D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +TG ++S GQ Q VALAR L  +P +L+LD  TSALD  +   ++ +L +  +    T++
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +++  +   +R A  +  L  G + E
Sbjct: 212 LITQQLSLAER-AHHILFLKEGSVCE 236

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ +RVA+A  + +EP++L+LDEP   LD     ++  ++ K  K  G T++++SH 
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 199
Query: 103 IKQIQRIADVVCLLVNGEIV 122
           I+ +    D V +L  G+ V
Sbjct: 200 IETVINHVDRVVVLEKGKKV 219

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
           +S G+ +RVA+A  + +EP++L+LDEP   LD     ++  ++ K  K  G T++++SH 
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 197
Query: 103 IKQIQRIADVVCLLVNGEIV 122
           I+ +    D V +L  G+ V
Sbjct: 198 IETVINHVDRVVVLEKGKKV 217

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 1   TVADNIRYG-PQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
           TV  NI YG    +G+   E +  +             +   E+S GQ QR ALAR LA 
Sbjct: 96  TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155
Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
           +PE++LLDEP SALD    + I + ++   + +G + V VSH  ++  + AD + ++  G
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215
Query: 120 EIVEVLKP 127
            I++   P
Sbjct: 216 RILQTASP 223

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38  KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
           +   E+S GQ + V + R L   P+++++D+P + + P    +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98  MVSHSIKQIQRIADVVCLLVNGEIV 122
           ++ H +  +    D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVM 98
           G  +S GQ QRV+LAR + +  ++ L D+P SA+D  +     E+V+         T ++
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184
Query: 99  VSHSIKQIQRIADVVCLLVNGEIVEV 124
           V+HS+  + ++ DV+ ++  G+I E+
Sbjct: 185 VTHSMSYLPQV-DVIIVMSGGKISEM 209

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 43  ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSH 101
           +S G+ QRV +AR L  +P+VL+LDEP + LD I+ +++  +L  L   +  +  + V+H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
            I++I      + LL +G+ ++
Sbjct: 222 FIEEITANFSKILLLKDGQSIQ 243

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 42  EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           ++S G+ QRV LA  +      AN   ++LLLD+P ++LD ++ Q+  D ++    + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALSQQGL 184
Query: 95  TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 146
            IVM SH +    R A    LL  G+++      EVL P  L++A + M  R L + G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 42  EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           ++S G+ QRV LA  +      AN   ++LLLD+P  +LD ++ Q+  D ++    + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKILSALSQQGL 184
Query: 95  TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 146
            IVM SH +    R A    LL  G+++      EVL P  L++A + M  R L + G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRVA+A TL  + ++ LLDEP++ LD      +   +  L +K+  T ++V H
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140
            +  I  ++D + ++  GE      P     A  PM +R
Sbjct: 531 DVLMIDYVSDRL-IVFEGE------PGRHGRALPPMGMR 562

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRVA+A TL  + ++ LLDEP++ LD      +   +  L +K+  T ++V H
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140
            +  I  ++D + ++  GE      P     A  PM +R
Sbjct: 517 DVLMIDYVSDRL-IVFEGE------PGRHGRALPPMGMR 548

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G+ QRVA+A TL  + ++ LLDEP++ LD      +   +  L +K+  T ++V H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 102 SIKQIQRIAD 111
            +  I  ++D
Sbjct: 461 DVLXIDYVSD 470

>pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43  ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           +S G+AQRV LA  L   +N   + +LDEPT+ L       + DVL +L   +G T++++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 602
Query: 100 SHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSEAKHPMALRFLQ 143
            H++  I + AD +  L        G+IV V  P+ ++E K     R+L+
Sbjct: 603 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 42  EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           ++S G+ QRV LA  +      AN   ++LLLDEP ++LD ++ Q+  D ++    + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALSQQGL 184
Query: 95  TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
            IV  SH +    R A    LL  G+ +      EVL P  L++A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229

>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43  ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           +S G+AQRV LA  L   +N   + +LDEPT+ L       + DVL +L   +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143
            H++  I + AD +  L        G+IV V  P+ ++E K     R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953

>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43  ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
           +S G+AQRV LA  L   +N   + +LDEPT+ L       + DVL +L   +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143
            H++  I + AD +  L        G+IV V  P+ ++E K     R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 42  EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           ++S G+ QRV LA  +      AN   ++LLLDEP ++LD ++ Q+  D ++    + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALCQQGL 184
Query: 95  TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
            IV  SH +    R A    LL  G+ +      EVL P  L++A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 38  KTGAEISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
           +   E+S G+AQR+ LA  L        V +LDEPT+ L P   + ++  LVKL    G 
Sbjct: 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GN 784
Query: 95  TIVMVSHSIKQI 106
           T++ V H ++ +
Sbjct: 785 TVIAVEHKMQVV 796

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 85
           G  +S G  Q + LAR++ ++ ++LLLDEP++ LDP++ Q I   L
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	3e-35
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-33
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	3e-29
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	9e-29
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-27
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-25
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-24
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-23
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	4e-24
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-23
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-23
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-23
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-23
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-20
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-22
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-20
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	6e-20
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	9e-20
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-19
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	9e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-19
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-19
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-19
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-19
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	5e-19
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-19
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-18
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-18
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-17
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	7e-17
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-16
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	4e-16
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-14
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	4e-14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	9e-14
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	3e-13
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	7e-13
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-12
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	8e-12
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-11
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-11
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	6e-11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	2e-10
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	2e-10
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	6e-10
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-07
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	5e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-04

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  122 bits (307), Expect = 3e-35
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           TV D +    +L  K L  +   ++L    L    L +   ++S GQ+  V  +  LA++
Sbjct: 89  TVNDIVYLYEEL--KGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNG 119
           PE++ LDEP   +D         V+ +  K++G   ++V+H +  +    +     LV  
Sbjct: 147 PEIVGLDEPFENVDAAR----RHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGN 202

Query: 120 EIVEVLKPD 128
            +   +   
Sbjct: 203 RLQGPISVS 211

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  119 bits (300), Expect = 2e-33
 Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 8/148 (5%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  N+    +L    K   +  V +LLSL  L         + +S GQ QRVA+AR LA
Sbjct: 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALA 179

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           + P+VLL D+ TSALDP +T++I ++L  + ++ G+TI++++H +  ++RI D V ++ N
Sbjct: 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN 239

Query: 119 GEIVE---VLKPDLLSEAKHPMALRFLQ 143
           GE++E   V   ++ S  K P+A +F+Q
Sbjct: 240 GELIEQDTVS--EVFSHPKTPLAQKFIQ 265

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  106 bits (267), Expect = 3e-29
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 16/156 (10%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           +V  ++ +G       L E+E    V   L    ++     K    +S GQ +RVA+A  
Sbjct: 101 SVYQDVSFGAVNMK--LPEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGV 157

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           L  EP+VL+LDEPT+ LDP+    I  +LV+++K+ G+TI++ +H I  +    D V ++
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217

Query: 117 VNGEIV------EVLK-PDLLSEA--KHPMALRFLQ 143
             G ++      EV    +++ +   + P     ++
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLME 253

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  104 bits (263), Expect = 9e-29
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 10/155 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE-VYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLA 58
            V D + +  +           V K +    LD  SF  +    +S G+ +RVA+A  + 
Sbjct: 95  RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           +EP++L+LDEP   LD     ++  ++ K K   G T++++SH I+ +    D V +L  
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEK 213

Query: 119 GEIV------EVLK-PDLLSEAKHPMALRFLQLSG 146
           G+ V      E L+  D        + +R L L G
Sbjct: 214 GKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKG 248

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  100 bits (252), Expect = 1e-27
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           +V D ++    L G K+ +NE+   L   ++      K G E+S G  +RV LA TL   
Sbjct: 94  SVEDYLKAVASLYGVKVNKNEIMDALESVEV-LDLKKKLG-ELSQGTIRRVQLASTLLVN 151

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
            E+ +LD+P  A+D  S   +   ++++ K+ G+ I+             DV   L    
Sbjct: 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE----ELSYCDVNENLHKYS 207

Query: 121 IV 122
             
Sbjct: 208 TK 209

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 95.7 bits (239), Expect = 2e-25
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           +V  NI YG +   +   +  V ++     + +  L +  A +S G+ QRVALAR L  +
Sbjct: 86  SVYRNIAYGLRNVERVERDRRVREMAEKLGI-AHLLDRKPARLSGGERQRVALARALVIQ 144

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P +LLLDEP SA+D  +   + + L  ++++  + I+ V+H + +   +AD V +++NG 
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204

Query: 121 IVEVLKPDLLSEAKHPMALRFL 142
           IVE  K   L  AK+     FL
Sbjct: 205 IVEKGKLKELFSAKNGEVAEFL 226

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 95.3 bits (238), Expect = 4e-25
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVS 100
            +S GQ Q + +AR +A+E +++LLDEPTSALD ++ Q+ +  +L+ L +   MT+V  +
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD-LANQDIVLSLLIDLAQSQNMTVVFTT 186

Query: 101 HSIKQIQRIADVVCLLVNGEIV-----EVLKPDLLSEA 133
           H   Q+  IA+   LL            +L  + L+  
Sbjct: 187 HQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTAL 224

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 96.6 bits (241), Expect = 3e-24
 Identities = 42/134 (31%), Positives = 76/134 (56%), Gaps = 17/134 (12%)

Query: 1    TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
            ++A+NI YG     + ++  E+ +    A++   F+              G ++S GQ Q
Sbjct: 1122 SIAENIAYG--DNSRVVSYEEIVRAAKEANIHQ-FIDSLPDKYNTRVGDKGTQLSGGQKQ 1178

Query: 50   RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
            R+A+AR L  +P +LLLDE TSALD  S + +++ L K ++  G T ++++H +  IQ  
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN- 1235

Query: 110  ADVVCLLVNGEIVE 123
            AD++ ++ NG++ E
Sbjct: 1236 ADLIVVIQNGKVKE 1249

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 19/134 (14%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           T+A+NIRYG +     +T +E+ K +  A+    F+ K            GA++S GQ Q
Sbjct: 479 TIAENIRYGRE----DVTMDEIEKAVKEANAYD-FIMKLPHQFDTLVGERGAQLSGGQKQ 533

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L   P++LLLDE TSALD  S   ++  L K ++  G T ++++H +  + R 
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLSTV-RN 590

Query: 110 ADVVCLLVNGEIVE 123
           ADV+     G IVE
Sbjct: 591 ADVIAGFDGGVIVE 604

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 94.2 bits (235), Expect = 4e-24
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV  NI YG  L   K    +    +  +L L  + S    +   E+S GQ QR ALAR 
Sbjct: 96  TVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGI-SELAGRYPHELSGGQQQRAALARA 152

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ----RIADV 112
           LA +PE++LLDEP SALD    + I + ++   + +G + V VSH     +    + AD 
Sbjct: 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD----REEALQYADR 208

Query: 113 VCLLVNGEIVEV 124
           + ++  G I++ 
Sbjct: 209 IAVMKQGRILQT 220

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 91.5 bits (228), Expect = 1e-23
 Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 12/150 (8%)

Query: 1   TVADNIRYGP-QLRGKKLTENEVY--KLLS---LADLDSSFLSKTGAEISVGQAQRVALA 54
           TV +NI   P ++R     + E    +LL    L D   ++       +S GQAQRVA+A
Sbjct: 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY----PDSLSGGQAQRVAIA 171

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R LA EP+++L DEPTSALDP     +  V+ +L  + GMT+V+V+H +   + + D V 
Sbjct: 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVL 230

Query: 115 LLVNGEIVEVLKPD-LLSEAKHPMALRFLQ 143
            +  G I+E  KP+ L    +H     FL 
Sbjct: 231 FMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 90.7 bits (226), Expect = 2e-23
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
              + +R+            E  V +   +A L      +     S G  +++ +AR L 
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS-TYSKGMVRKLLIARALM 162

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P + +LDEPTS LD ++ + +  +L +  ++ G+TI++ SH++ +++ + D + L+ N
Sbjct: 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHN 221

Query: 119 GEIVEVLKPDLLSEA--KHPMALRFLQLSG 146
           G IVE    + L E      +   F ++  
Sbjct: 222 GTIVETGTVEELKERYKAQNIEEVFEEVVK 251

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 16/134 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQ 49
           +  +NI YG     +  T  E+  +   +     F+S            TG ++S GQ Q
Sbjct: 108 SFRENIAYG---LTRTPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSGGQRQ 163

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
            VALAR L  +P +L+LD  TSALD  +   ++ +L +  +    T+++++  +   +R 
Sbjct: 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER- 222

Query: 110 ADVVCLLVNGEIVE 123
           A  +  L  G + E
Sbjct: 223 AHHILFLKEGSVCE 236

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 91.8 bits (229), Expect = 3e-23
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 1   TVADNIRYGPQLRGKKLTENE-VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
            V  N+ +G  +R KK+ + + V        +    L +    +S G+ QRVALAR L  
Sbjct: 88  NVKKNLEFG--MRMKKIKDPKRVLDTARDLKI-EHLLDRNPLTLSGGEQQRVALARALVT 144

Query: 60  EPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSH 101
            P++LLLDEP SALDP    + +     L  L KK+ +T++ ++H
Sbjct: 145 NPKILLLDEPLSALDPRTQENAR-EM--LSVLHKKNKLTVLHITH 186

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 7/105 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV DN+ +G  LR K++ ++E    V +LL    L+S + ++   E+S GQ QRVALAR 
Sbjct: 103 TVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARA 159

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           LA  P+VLL DEP +A+D    + +   + ++  + G+T V V+H
Sbjct: 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 90.9 bits (226), Expect = 2e-22
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 19  ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78
           + +V K L + D+    +      +S G+ QRVA+   L    ++ L+DEP++ LD    
Sbjct: 448 QTDVVKPLRIDDIIDQEVQ----HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503

Query: 79  QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 138
                V+ +    +  T  +V H       +AD V +                 A+ P +
Sbjct: 504 IICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-------HARAPES 556

Query: 139 LR 140
           L 
Sbjct: 557 LL 558

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
            V + ++   +   + +      K+L L ++    +     ++S G+ QR A+  +   E
Sbjct: 186 KVGELLKLRMEKSPEDV--KRYIKILQLENVLKRDIE----KLSGGELQRFAIGMSCVQE 239

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
            +V + DEP+S LD     N   ++  L       ++ V H +  +  ++D VC++    
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVP 298

Query: 121 IVE--VLKPDLLSEAKHPMALRFLQ 143
            V   V  P  + E  +      + 
Sbjct: 299 SVYGVVTLPASVREGINIFLDGHIP 323

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 87.6 bits (218), Expect = 4e-22
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 1   TVADNIRYGP-QLRGKKLTENEVY--KLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57
           TV +N+   P Q+ G    +      K L+   +D     K    +S GQ QRV++AR L
Sbjct: 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 168

Query: 58  ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
           A EP+VLL DEPTSALDP     +  ++ +L ++ G T+V+V+H +   + ++  V  L 
Sbjct: 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH 227

Query: 118 NGEIVEVLKPD-LLSEAKHPMALRFLQ 143
            G+I E   P+ +    + P   +FL+
Sbjct: 228 QGKIEEEGDPEQVFGNPQSPRLQQFLK 254

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 84.5 bits (210), Expect = 4e-21
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S GQ QRVA+AR LAN P ++L D+PT ALD  + + I  +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
               + R  + +  L +GE+  
Sbjct: 205 D-INVARFGERIIYLKDGEVER 225

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 85.3 bits (212), Expect = 4e-21
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 24  KLLSLADL-DSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 82
           KL+ ++              +S G+ QRV +AR L  +P+VL+LDEP + LD I+ +++ 
Sbjct: 147 KLVGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201

Query: 83  DVLVKLKKKH-GMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
            +L  L   +  + ++ V+H I++I      + LL +G+ +      ++L  + +S  
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRF 259

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
            EV K L+L  L  S ++    ++S G+ Q++ +A TLA E ++ +LD+P+S LD     
Sbjct: 367 EEVTKRLNLHRLLESNVN----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE---VLKPDLLSEAKHP 136
            +   + ++ ++      ++ H +     IAD + +   GE  +      P  L    + 
Sbjct: 423 IVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGLATSPVTLKTGMNE 481

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 83.9 bits (208), Expect = 6e-20
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +S G  QR+ +A +L  E +V + D+P+S LD     N+   + +L K     +++V H
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDH 195

Query: 102 SIKQIQRIADVVCLLVNGEIVE--VLKPDLLSEAKHPMALRFLQ 143
            +  +  + D++ ++     V   V K        +     +L 
Sbjct: 196 DLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 83.5 bits (207), Expect = 9e-20
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
            E+ K L + DL    +     ++S G+ QRVA+A TL  + ++ LLDEP++ LD     
Sbjct: 453 TELLKPLGIIDLYDRNVE----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
            +   +  L +K+  T ++V H +  I  ++D + ++  GE   
Sbjct: 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-IVFEGEPGR 551

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           ++S G+ QRVA+A  L  +      DEP+S LD      +  V+ +L  + G  +++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 286

Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
            +  +  ++DV+ ++     V 
Sbjct: 287 DLAVLDYLSDVIHVVYGEPGVY 308

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 83.1 bits (206), Expect = 9e-20
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 21  EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80
           EV K L L ++    +      +S G+ QRVA+A  L         DEP+S LD     N
Sbjct: 141 EVVKALELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196

Query: 81  IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL--VNGEIVEVLKPDLLSEAKHPMA 138
               + +L ++ G ++++V H +  +  ++D++ ++    G      +P       +   
Sbjct: 197 AARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFL 255

Query: 139 LRFLQ 143
             +L+
Sbjct: 256 RGYLK 260

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 20  NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79
            E+ K L + DL    +     E+S G+ QRVA+A TL  + ++ LLDEP++ LD     
Sbjct: 383 TELLKPLGIIDLYDREV----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438

Query: 80  NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
            +   +  L +K+  T ++V H +  I  ++D + +   GE  +
Sbjct: 439 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGK 481

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 42  EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           E+S G+ QRVA+AR LANEP +L  DEPT  LD  +T+ + D+ +K+ +  G +IVMV+H
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTH 198

Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
             +++  +      + +G++V 
Sbjct: 199 E-RELAELTHRTLEMKDGKVVG 219

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 19/134 (14%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQ 49
           T+  NI YG        T+ EV K    A L   F+              G ++S G+ Q
Sbjct: 108 TIKYNILYGKL----DATDEEVIKATKSAQLYD-FIEALPKKWDTIVGNKGMKLSGGERQ 162

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L  +P++++ DE TS+LD  +    +  +  L+K    T+++++H +  I   
Sbjct: 163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLIIIAHRLSTISS- 219

Query: 110 ADVVCLLVNGEIVE 123
           A+ + LL  G+IVE
Sbjct: 220 AESIILLNKGKIVE 233

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 79.1 bits (196), Expect = 5e-19
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA-- 58
            V   +      +  K     +  +     LD   L ++  ++S G+ QRV LA  +   
Sbjct: 89  PVWHYLTLH---QHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQI 144

Query: 59  -----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
                   ++LLLDEP ++LD ++ Q+  D ++    + G+ IVM SH +    R A   
Sbjct: 145 TPQANPAGQLLLLDEPMNSLD-VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203

Query: 114 CLLVNGEIV------EVLKPDLLSEA 133
            LL  G+++      EVL P  L++A
Sbjct: 204 WLLKGGKMLASGRREEVLTPPNLAQA 229

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 79.1 bits (196), Expect = 5e-19
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 18/134 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQ 49
           T+ +N+ YG +      T+ +++++L LA   S F+              G +IS GQ Q
Sbjct: 91  TIRENLTYGLEG---DYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISGGQRQ 146

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR     P++L+LDE T++LD  S   ++  L  L K  G T ++++H +  I   
Sbjct: 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVD- 203

Query: 110 ADVVCLLVNGEIVE 123
           AD +  +  G+I  
Sbjct: 204 ADKIYFIEKGQITG 217

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 79.6 bits (197), Expect = 7e-19
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 17/133 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----KT-----GAEISVGQAQR 50
           T+ADNIRYG          +EV      A +  + ++     +T     G ++S G+ QR
Sbjct: 143 TIADNIRYGRV----TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           VA+ART+   P ++LLDE TSALD  + + I+  L K+      T ++V+H +  +   A
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-A 255

Query: 111 DVVCLLVNGEIVE 123
           D + ++ +G IVE
Sbjct: 256 DQILVIKDGCIVE 268

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 77.9 bits (193), Expect = 1e-18
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 19/134 (14%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQ 49
           ++ DNI          ++  +V     LA     F+S+            GA +S GQ Q
Sbjct: 98  SIIDNISLANP----GMSVEKVIYAAKLAGAHD-FISELREGYNTIVGEQGAGLSGGQRQ 152

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L N P++L+ DE TSALD  S   I   + K+ K  G T+++++H +  ++  
Sbjct: 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKN- 209

Query: 110 ADVVCLLVNGEIVE 123
           AD + ++  G+IVE
Sbjct: 210 ADRIIVMEKGKIVE 223

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 18/134 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQ 49
           T+A+NI Y  +    + T  ++ +    A     F+              G  +S GQ Q
Sbjct: 432 TIANNIAYAAEG---EYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSGGQRQ 487

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           RVA+AR L  +  VL+LDE TSALD  S + I+  L +L+K    T+++++H +  I++ 
Sbjct: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLSTIEQ- 544

Query: 110 ADVVCLLVNGEIVE 123
           AD + ++  GEI+E
Sbjct: 545 ADEILVVDEGEIIE 558

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 75.3 bits (186), Expect = 7e-17
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 18/134 (13%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQ 49
           TVA+NI Y    R ++ +  ++ +   +A     F++K            G  +S GQ Q
Sbjct: 432 TVANNIAYA---RTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQ 487

Query: 50  RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109
           R+A+AR L  +  +L+LDE TSALD  S + I+  L +L+K    T ++++H +  I++ 
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEQ- 544

Query: 110 ADVVCLLVNGEIVE 123
           AD + ++ +G IVE
Sbjct: 545 ADEIVVVEDGIIVE 558

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 19/138 (13%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           T  +NI +          E      EV K+L +  +    L+    E+S  Q QRVALAR
Sbjct: 98  TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV----LNHFPRELSGAQQQRVALAR 153

Query: 56  TLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ--RIA 110
            L  +P +LLLDEP S LD     S +     + +++ + G+T+++VSH         IA
Sbjct: 154 ALVKDPSLLLLDEPFSNLDARMRDSAR-AL--VKEVQSRLGVTLLVVSHD--PADIFAIA 208

Query: 111 DVVCLLVNGEIVEVLKPD 128
           D V +LV G++V+V KP+
Sbjct: 209 DRVGVLVKGKLVQVGKPE 226

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 73.0 bits (180), Expect = 4e-16
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 21/135 (15%)

Query: 1   TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDS----------SFLSKTGAEISVGQA 48
           TV +NI  G      +   T+ EV +   +A+             + + + G ++S GQ 
Sbjct: 430 TVKENILLG------RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483

Query: 49  QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108
           QR+++AR   N P +L+LDE TSALD  S   I++ L  L K    T ++V+H +  I  
Sbjct: 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTITH 541

Query: 109 IADVVCLLVNGEIVE 123
            AD + ++ NG IVE
Sbjct: 542 -ADKIVVIENGHIVE 555

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 1   TVADNIRYGPQLRGKKL---------------TENEVYKLLSLADLDSSFLSKTGAEISV 45
           TV +N+  G    G+                    + +K+L    L      +   E+S 
Sbjct: 98  TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSG 156

Query: 46  GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105
           GQ + V + R L   P+++++DEP + + P    +I + +++LK K G+T +++ H +  
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDI 215

Query: 106 IQRIADVVCLLVNGEI 121
           +    D + ++ NG+I
Sbjct: 216 VLNYIDHLYVMFNGQI 231

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 27/137 (19%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQR 50
           T+ +N+++G     +  T++E+ +   +A +            S + + G   S GQ QR
Sbjct: 432 TIKENLKWG----REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI- 109
           +++AR L  +P+VL+LD+ TS++DPI+ + I D L +  K  G T  +++      Q+I 
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIIT------QKIP 539

Query: 110 ----ADVVCLLVNGEIV 122
               AD + +L  G++ 
Sbjct: 540 TALLADKILVLHEGKVA 556

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 19/138 (13%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV  NI +  +LR     E      EV K+L +  L    L++   ++S GQ QRVA+AR
Sbjct: 91  TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL----LNRYPWQLSGGQQQRVAIAR 146

Query: 56  TLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ--RIA 110
            L  EPEVLLLDEP S LD    +  +  E  L +L+K+ G+T V V+H   Q +   +A
Sbjct: 147 ALVKEPEVLLLDEPLSNLDALLRLEVR-AE--LKRLQKELGITTVYVTHD--QAEALAMA 201

Query: 111 DVVCLLVNGEIVEVLKPD 128
           D + ++  GEI++V  PD
Sbjct: 202 DRIAVIREGEILQVGTPD 219

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 66.0 bits (162), Expect = 9e-14
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 21/135 (15%)

Query: 1   TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDS----------SFLSKTGAEISVGQA 48
           TV +N++YG          T+ E+ +   L   D           + L+  G ++S GQ 
Sbjct: 444 TVKENLKYG------NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497

Query: 49  QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108
           Q +A+ R     P++L+LDE TS +D  + ++I+  + KL +  G T ++++H +  I+ 
Sbjct: 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN 555

Query: 109 IADVVCLLVNGEIVE 123
            AD++ +L +GEIVE
Sbjct: 556 -ADLIIVLRDGEIVE 569

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 15/109 (13%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +NI +  +++     E         +LL + +L    L++  A++S GQ QRVA+AR
Sbjct: 99  TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL----LNRYPAQLSGGQRQRVAVAR 154

Query: 56  TLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +  EP+VLL+DEP S LD    ++ +  E  + KL++K  +T + V+H
Sbjct: 155 AIVVEPDVLLMDEPLSNLDAKLRVAMR-AE--IKKLQQKLKVTTIYVTH 200

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 15/109 (13%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV +NI +  + R     E      E+ + L + +L    L +   ++S GQ QRVALAR
Sbjct: 91  TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL----LDRKPTQLSGGQQQRVALAR 146

Query: 56  TLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSH 101
            L  +P+VLL DEP S LD    +  +  E  +  L+++ G+T V V+H
Sbjct: 147 ALVKQPKVLLFDEPLSNLDANLRMIMR-AE--IKHLQQELGITSVYVTH 192

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 15/109 (13%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           TV DNI +  +LR     E      EV +LL L +L    L++   E+S GQ QRVAL R
Sbjct: 97  TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL----LNRKPRELSGGQRQRVALGR 152

Query: 56  TLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSH 101
            +  +P+V L+DEP S LD    +  +  E  L KL+++ G+T + V+H
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMR-AE--LKKLQRQLGVTTIYVTH 198

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 60.5 bits (147), Expect = 8e-12
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 31  LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 90
           LD   L   G  +S G  Q + LAR++ ++ ++LLLDEP++ LDP++ Q I   L   + 
Sbjct: 145 LDFV-LVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL--KQA 201

Query: 91  KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130
               T+++    I+ +    D   ++   ++ +      L
Sbjct: 202 FADCTVILCEARIEAMLE-CDQFLVIEENKVRQYDSILEL 240

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 46  GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105
           G+ Q +A+ R L + P++L++DEP+  L PI    + +V+ K+  + G TI++V  +   
Sbjct: 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNALG 201

Query: 106 IQRIADVVCLLVNGEIV 122
             ++A    +L  G+IV
Sbjct: 202 ALKVAHYGYVLETGQIV 218

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVM 98
           G  +S GQ QRV+LAR + +  ++ L D+P SA+D  +     E+V+         T ++
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184

Query: 99  VSHSIKQIQRIADVVCLLVNGEIVEV 124
           V+HS+       DV+ ++  G+I E+
Sbjct: 185 VTHSM-SYLPQVDVIIVMSGGKISEM 209

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSL-ADL------DSSFLSKTGAEISVGQAQRVAL 53
           T+ +NI +G      +     V K   L  D+      D+  L + G  +S GQ  R++L
Sbjct: 84  TIKENIIFGVSYDEYRY--RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141

Query: 54  ARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVK-LKKKHGMTIVMVSHSIKQIQRIAD 111
           AR +  + ++ LLD P   LD     +  E  + K +  K   T ++V+  + +  + AD
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSKM-EHLKKAD 197

Query: 112 VVCLLVNGEIVEV 124
            + +L  G     
Sbjct: 198 KILILHEGSSYFY 210

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.1 bits (140), Expect = 6e-11
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 10  PQLRGKKLTENEVYKLLSLADLDSSFLSKTG-AEISVGQAQRVALARTLANEPEVLLLDE 68
              + + LT  E+ +  S+  LD   +S +    +S GQ  ++ LA      P +++LDE
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927

Query: 69  PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122
           PT+ LD  S   +   L + +      +++++HS +  + + + V  + +G + 
Sbjct: 928 PTNYLDRDSLGALSKALKEFEG----GVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 18  TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77
           T+  +   L         ++   + +S G   ++ALAR +    ++LLLDEPT+ LD ++
Sbjct: 524 TKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583

Query: 78  TQNIEDVLVKLKKKHGMTIVMVSHS 102
              + + L         T + +SH 
Sbjct: 584 VAWLVNYLNTCGI----TSITISHD 604

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 40  GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVK-LKKKHGMTIV 97
           G  +S GQ  R++LAR +  + ++ LLD P   LD     +  E  + K +  K   T +
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRI 213

Query: 98  MVSHSIKQIQRIADVVCLLVNGEIVE 123
           +V+  ++ +++ AD + +L  G    
Sbjct: 214 LVTSKMEHLKK-ADKILILHEGSSYF 238

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 9/79 (11%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           +VA+N+ +G +L G K        N+V ++L LA L    L +    +S GQ QRVA+ R
Sbjct: 91  SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----LDRKPKALSGGQRQRVAIGR 146

Query: 56  TLANEPEVLLLDEPTSALD 74
           TL  EP V LLDEP S LD
Sbjct: 147 TLVAEPSVFLLDEPLSNLD 165

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 55.1 bits (132), Expect = 6e-10
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 6   IRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL 65
            +Y   +   +  +  ++ +    +   +FLS  G  I++G A R+A++  LA E  +L+
Sbjct: 219 GKYSEVVVRAEENKVRLFVVWEGKERPLTFLSG-GERIALGLAFRLAMSLYLAGEISLLI 277

Query: 66  LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           LDEPT  LD    + +  ++ +  KK    +++VSH  ++++  AD V
Sbjct: 278 LDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSH-DEELKDAADHV 323

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 10  PQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA------NEPEV 63
            + +  ++        + L  +      +    +S G+   + LA  LA       E  +
Sbjct: 26  TEGKYSEVVVRAEENKVRLF-VVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISL 84

Query: 64  LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           L+LDEPT  LD    + +  ++ +  KK    +++VSH  +     AD V
Sbjct: 85  LILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELK-DAADHV 132

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 48  AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           +  ++LA   +   +   +DE  S+LD  + + I  VL +L ++    IV ++H
Sbjct: 291 SLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERLNKVIVFITH 343

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 48  AQRVALARTLANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106
           + R+A+A  L     E ++LDEPT  LD      + ++  K+K      +++++H  +++
Sbjct: 292 SLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIP--QMIIITH-HREL 348

Query: 107 QRIADVV 113
           + +ADV+
Sbjct: 349 EDVADVI 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.98
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.98
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.97
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.97
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.97
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.96
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.96
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.95
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.95
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.94
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.94
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.94
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.93
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.93
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.89
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.87
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.87
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.86
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.86
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.85
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.79
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.79
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.78
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.68
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.63
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.56
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.52
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.51
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.48
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.43
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.43
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.36
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.33
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.32
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.29
2og2_A	359	Putative signal recognition particle receptor; nuc	99.25
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.24
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.23
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.18
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.18
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.18
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.17
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.17
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.15
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.14
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.08
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.93
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.92
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.86
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.78
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.51
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.44
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.44
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.42
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.24
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.23
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.17
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.05
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.03
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.92
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.86
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.84
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.75
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.66
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.6
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.55
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.5
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.32
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.08
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.97
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.89
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.59
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.45
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.45
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.87
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.67
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.58
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.35
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.35
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.33
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.22
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.13
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.02
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.0
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.53
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	94.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.01
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.81
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.71
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	93.67
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.48
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.95
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.87
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.23
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	90.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.78
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	90.75
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.6
1xp8_A	366	RECA protein, recombinase A; recombination, radior	90.39
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	90.26
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	90.11
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	89.98
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	89.27
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	87.9
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	87.8
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	87.34
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	87.11
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	85.17
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	85.11
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	84.81
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	84.35
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	84.1
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	83.95
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	83.69
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	83.59
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	83.16
3bos_A	242	Putative DNA replication factor; P-loop containing	82.89
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	82.85
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	82.57
1b9m_A	265	Protein (mode); DNA-binding, gene regulation, wing	82.16
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	80.71
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	80.37

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=4e-39  Score=254.43  Aligned_cols=142  Identities=37%  Similarity=0.564  Sum_probs=124.6

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++....+.+  ...+++.++++.+|+. ++.++++.+|||||||||+|||||+++|++|||||||+|||+.++
T Consensus       121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~  199 (366)
T 3tui_C          121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT  199 (366)
T ss_dssp             CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            7899999986554432  2245688899999996 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..++++|++++++.|+|||+||||++++.++||||++|++|++++.|+++++.. +.+++...|+.
T Consensus       200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~  265 (366)
T 3tui_C          200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ  265 (366)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence            999999999987779999999999999999999999999999999999988754 45566665543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.6e-38  Score=249.38  Aligned_cols=141  Identities=32%  Similarity=0.459  Sum_probs=123.0

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|++..++..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus        96 tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r  174 (359)
T 3fvq_A           96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR  174 (359)
T ss_dssp             CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            7899999987654332  2245688999999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~  142 (146)
                      ..+.+.+.++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++... .......|.
T Consensus       175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~~~  239 (359)
T 3fvq_A          175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFI  239 (359)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence            9999999888777799999999999999999999999999999999999987643 334444444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2e-38  Score=251.68  Aligned_cols=142  Identities=32%  Similarity=0.493  Sum_probs=125.3

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|++..++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~  169 (381)
T 3rlf_A           91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  169 (381)
T ss_dssp             CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence            78999999876554322  245688999999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +.+.+...|++
T Consensus       170 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g  235 (381)
T 3rlf_A          170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIG  235 (381)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence            999999999987779999999999999999999999999999999999998754 44556666653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=4.2e-38  Score=236.62  Aligned_cols=141  Identities=33%  Similarity=0.436  Sum_probs=119.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.++...++.....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.
T Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~  164 (240)
T 2onk_A           86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV  164 (240)
T ss_dssp             CHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred             cHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            68999998754332212245688899999996 57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +.+.|++++++.|+|||++|||++++..+||++++|++|++++.|+++++..........|+
T Consensus       165 ~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  226 (240)
T 2onk_A          165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL  226 (240)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCchHHHHHHh
Confidence            99999999765699999999999999999999999999999999999887532233333443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=6.4e-38  Score=238.75  Aligned_cols=131  Identities=29%  Similarity=0.415  Sum_probs=117.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN------EPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD   74 (146)
                      ||+||+.++...+......+++.++++.+++. ++.++++.+|||||||||+|||||++      +|++|||||||+|||
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD  179 (266)
T 4g1u_C          101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD  179 (266)
T ss_dssp             BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCC
T ss_pred             CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCC
Confidence            68999998765443333456788999999996 57899999999999999999999999      999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.++..+.+.|++++++.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus       180 ~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          180 LYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN  237 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence            9999999999999987656899999999999999999999999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.4e-38  Score=241.26  Aligned_cols=131  Identities=29%  Similarity=0.473  Sum_probs=116.5

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++....+.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~  179 (275)
T 3gfo_A          101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV  179 (275)
T ss_dssp             BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence            68999998765443321  235688899999995 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+++.|++++++.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999973449999999999999999999999999999999999988754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.7e-37  Score=244.65  Aligned_cols=142  Identities=32%  Similarity=0.486  Sum_probs=123.4

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus       103 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  181 (355)
T 1z47_A          103 TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR  181 (355)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            78999999865443221  245688999999995 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g  247 (355)
T 1z47_A          182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIG  247 (355)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence            999999999987669999999999999999999999999999999999998754 33445555553

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=2.3e-37  Score=243.88  Aligned_cols=142  Identities=32%  Similarity=0.429  Sum_probs=123.3

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r  176 (353)
T 1oxx_K           98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR  176 (353)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            78999999865443221  245688999999995 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g  242 (353)
T 1oxx_K          177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG  242 (353)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence            999999999976669999999999999999999999999999999999998754 33445555553

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.6e-37  Score=244.34  Aligned_cols=141  Identities=30%  Similarity=0.524  Sum_probs=123.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.|+...++.+.. +++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+..
T Consensus        88 tv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~  165 (348)
T 3d31_A           88 NVKKNLEFGMRMKKIKDP-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN  165 (348)
T ss_dssp             CHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence            789999998654433222 6788999999996 68899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       166 l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g  229 (348)
T 3d31_A          166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVG  229 (348)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence            9999999987679999999999999999999999999999999999998754 33345555554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=2.3e-37  Score=244.18  Aligned_cols=142  Identities=30%  Similarity=0.447  Sum_probs=123.3

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        91 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  169 (359)
T 2yyz_A           91 TVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR  169 (359)
T ss_dssp             CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            78999999865443221  235688999999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g  235 (359)
T 2yyz_A          170 MIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIG  235 (359)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence            999999999977669999999999999999999999999999999999998754 33445555553

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.3e-37  Score=231.86  Aligned_cols=130  Identities=32%  Similarity=0.483  Sum_probs=109.8

Q ss_pred             ChHHHhhcCcccc---CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLR---GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||+||+.++....   ...  ...+++.++++.+++.....++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus        99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  178 (235)
T 3tif_A           99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS  178 (235)
T ss_dssp             CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            6899998864332   111  12345778899999964345899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      .++..+.+.|++++++.|+|||+||||++. ..+||||++|++|++++.++++++.
T Consensus       179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEECC---
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcChhhhc
Confidence            999999999999976569999999999985 4899999999999999998887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=4.1e-37  Score=243.80  Aligned_cols=142  Identities=27%  Similarity=0.415  Sum_probs=122.6

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        99 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  177 (372)
T 1v43_A           99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR  177 (372)
T ss_dssp             CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            78999999865443322  235688899999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|++++++.|.|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g  243 (372)
T 1v43_A          178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG  243 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence            999999999987669999999999999999999999999999999999998754 33445555543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=3.5e-37  Score=244.26  Aligned_cols=142  Identities=30%  Similarity=0.472  Sum_probs=123.2

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  175 (372)
T 1g29_1           97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (372)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence            78999999865443321  235688899999995 688999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g  241 (372)
T 1g29_1          176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIG  241 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence            999999999987669999999999999999999999999999999999998754 33445555543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.3e-37  Score=244.45  Aligned_cols=142  Identities=36%  Similarity=0.509  Sum_probs=123.2

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.|+...++.+.  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus        91 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  169 (362)
T 2it1_A           91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR  169 (362)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence            78999999865443321  235688899999996 588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus       170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g  235 (362)
T 2it1_A          170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLG  235 (362)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence            999999999977669999999999999999999999999999999999998754 33345555543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-36  Score=231.44  Aligned_cols=140  Identities=35%  Similarity=0.506  Sum_probs=118.6

Q ss_pred             ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954            1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI   76 (146)
Q Consensus         1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~   76 (146)
                      ||+||+.++. ..++..  ...+++.++++.+++. ++ .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~  187 (262)
T 1b0u_A          109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE  187 (262)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred             cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence            6899998853 222222  1234678899999996 57 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      ++..+.+.|++++++ |+|||+||||++++..+||+|++|++|++++.|+++++.. +.......|+
T Consensus       188 ~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  253 (262)
T 1b0u_A          188 LVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL  253 (262)
T ss_dssp             HHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence            999999999999765 9999999999999999999999999999999999988753 3334444443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.5e-36  Score=230.81  Aligned_cols=140  Identities=38%  Similarity=0.534  Sum_probs=118.9

Q ss_pred             ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||+||+.++. ...+..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~  194 (263)
T 2olj_A          116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM  194 (263)
T ss_dssp             CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence            6899998853 222222  1234678899999995 67899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL  142 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~  142 (146)
                      +..+.+.|++++++ |+|||++|||++++..+||+|++|++|++++.|+++++.. +.......|+
T Consensus       195 ~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  259 (263)
T 2olj_A          195 VGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL  259 (263)
T ss_dssp             HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHHH
Confidence            99999999999765 9999999999999999999999999999999999988753 3334444443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.6e-36  Score=229.80  Aligned_cols=127  Identities=24%  Similarity=0.468  Sum_probs=112.5

Q ss_pred             ChHHHhhcCccc--cC-----------CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954            1 TVADNIRYGPQL--RG-----------KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL   65 (146)
Q Consensus         1 tv~eni~~~~~~--~~-----------~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll   65 (146)
                      ||.||+.++...  .+           ..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus        98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll  176 (257)
T 1g6h_A           98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIV  176 (257)
T ss_dssp             BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            689999886532  11           11  1234678899999995 67899999999999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954           66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL  129 (146)
Q Consensus        66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  129 (146)
                      |||||+|||+.++..+.+.|++++++ |+|||++|||++++..+||+|++|++|++++.|++++
T Consensus       177 LDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          177 MDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999999999999999999764 9999999999999999999999999999999999887

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=5.1e-36  Score=223.04  Aligned_cols=123  Identities=34%  Similarity=0.458  Sum_probs=108.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++..  ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (224)
T 2pcj_A           98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT  176 (224)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred             CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence            6889998865433322  1235678899999996 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      ..+.+.|++++++ |+|||++|||++.+ .+||++++|++|++++.|+
T Consensus       177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          177 KRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            9999999999765 99999999999987 8999999999999998886

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=5.1e-36  Score=227.16  Aligned_cols=129  Identities=26%  Similarity=0.425  Sum_probs=113.8

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++...  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       104 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~  182 (256)
T 1vpl_A          104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA  182 (256)
T ss_dssp             BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence            68899988654333221  134678899999995 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|+++++ .|+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       183 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          183 REVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            999999999975 4999999999999999999999999999999999988774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=8.8e-36  Score=223.80  Aligned_cols=130  Identities=29%  Similarity=0.431  Sum_probs=112.4

Q ss_pred             ChHHHhhcCccccC-CCccHHHHHHHHHHcC-CChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRG-KKLTENEVYKLLSLAD-LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~-~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++..... .....+.+.++++.++ +. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        97 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~  175 (240)
T 1ji0_A           97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV  175 (240)
T ss_dssp             BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence            68999988642211 1122345778889984 84 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ..+.+.|+++++ .|+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus       176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          176 SEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            999999999975 59999999999999999999999999999999999887753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=9.9e-36  Score=226.57  Aligned_cols=130  Identities=27%  Similarity=0.358  Sum_probs=114.5

Q ss_pred             ChHHHhhcCcccc-CCCccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLR-GKKLTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++.... ......+++.++++.+|+.. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        95 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~  174 (266)
T 2yz2_A           95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK  174 (266)
T ss_dssp             SHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence            6899999875332 11223567889999999951 578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      ..+.+.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       175 ~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          175 TDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999765 999999999999999999999999999999999887764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.9e-35  Score=223.64  Aligned_cols=129  Identities=27%  Similarity=0.357  Sum_probs=113.0

Q ss_pred             ChHHHhhcCcccc-C----CC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQLR-G----KK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~~-~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+||+.++.... +    .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus        82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD  160 (253)
T 2nq2_C           82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD  160 (253)
T ss_dssp             BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred             CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            6899999875321 1    11 1235678899999995 57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.++..+.+.|.+++++.|+|||++|||++++..+||++++|++|+ ++.|+++++.
T Consensus       161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence            9999999999999976558999999999999999999999999999 8999888764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=6.1e-35  Score=220.45  Aligned_cols=127  Identities=25%  Similarity=0.352  Sum_probs=113.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC-------EEEeeCCCCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE-------VLLLDEPTSAL   73 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~-------llllDEPt~~L   73 (146)
                      ||+||+.++... ..  ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+       +|||||||+||
T Consensus        89 tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L  164 (249)
T 2qi9_C           89 PVWHYLTLHQHD-KT--RTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL  164 (249)
T ss_dssp             BHHHHHHTTCSS-TT--CHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred             cHHHHHHHhhcc-CC--cHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence            688999886321 11  256788899999995 57899999999999999999999999999       99999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+.++..+.+.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus       165 D~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          165 DVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999765 9999999999999999999999999999999999887753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-35  Score=226.74  Aligned_cols=130  Identities=28%  Similarity=0.366  Sum_probs=112.6

Q ss_pred             ChHHHhhcCccc----cCC-C-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQL----RGK-K-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~----~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||+||+.++...    ++. . ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus       115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD  193 (279)
T 2ihy_A          115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD  193 (279)
T ss_dssp             BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred             CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence            688999886421    111 1 1234678899999995 67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeE--EEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTI--VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tv--i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      +.+++.+.+.|++++++ |+||  |+||||++++..+||+|++|++|++++.|+++++..
T Consensus       194 ~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  252 (279)
T 2ihy_A          194 FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT  252 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999765 9999  999999999999999999999999999999887643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.5e-34  Score=220.64  Aligned_cols=135  Identities=27%  Similarity=0.354  Sum_probs=108.8

Q ss_pred             ChHHHhhcCccccCC-Ccc-----HHHHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954            1 TVADNIRYGPQLRGK-KLT-----ENEVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA   72 (146)
Q Consensus         1 tv~eni~~~~~~~~~-~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~   72 (146)
                      ||+||+.++...... ...     ...+.++++.+  |+. .+.++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus       108 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~  186 (271)
T 2ixe_A          108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA  186 (271)
T ss_dssp             BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence            689999987532211 000     01134556666  563 456788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      ||+.++..+.+.|++++++.|+|||+||||++.+.. ||+|++|++|++++.|+++++......+
T Consensus       187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~  250 (271)
T 2ixe_A          187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMERGGCY  250 (271)
T ss_dssp             CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCcHHH
Confidence            999999999999999865458999999999998865 9999999999999999998875433333

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=8.1e-34  Score=219.88  Aligned_cols=126  Identities=35%  Similarity=0.506  Sum_probs=105.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++...    ...+++.++++.+++..          ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus       143 Tv~eNi~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt  218 (306)
T 3nh6_A          143 TIADNIRYGRVT----AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT  218 (306)
T ss_dssp             EHHHHHHTTSTT----CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             cHHHHHHhhccc----CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            689999987532    12345556666665531          1234556799999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ++||+.+...+.+.|.++.+  ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus       219 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          219 SALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             SCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999999863  7999999999999976 999999999999999999987654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.2e-33  Score=213.05  Aligned_cols=125  Identities=35%  Similarity=0.509  Sum_probs=106.2

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++..    ....+++.++++.+++. ++.++           ++.+|||||||||+|||||+.+|++||||||
T Consensus        98 tv~enl~~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEP  172 (247)
T 2ff7_A           98 SIIDNISLANP----GMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA  172 (247)
T ss_dssp             BHHHHHTTTCT----TCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cHHHHHhccCC----CCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            68899988631    12345667778888874 34443           4589999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+|||+.++..+.+.|+++. + |+|||+|||+++.+. .||++++|++|++++.|+++++...
T Consensus       173 ts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~  233 (247)
T 2ff7_A          173 TSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE  233 (247)
T ss_dssp             CSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTS
T ss_pred             cccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999994 4 999999999999886 5999999999999999999887543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=1.4e-34  Score=218.47  Aligned_cols=127  Identities=27%  Similarity=0.363  Sum_probs=104.7

Q ss_pred             ChHHHhhcCccc-cCC--C--ccHHHHHHHHHHcCCChhhhcCCcCC-CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954            1 TVADNIRYGPQL-RGK--K--LTENEVYKLLSLADLDSSFLSKTGAE-ISVGQAQRVALARTLANEPEVLLLDEPTSALD   74 (146)
Q Consensus         1 tv~eni~~~~~~-~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~ia~al~~~p~llllDEPt~~LD   74 (146)
                      ||.||+.++... .+.  .  ...+++.++++.+++..++.++++.+ |||||||||+|||||+.+|++|||||||+|||
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD  175 (250)
T 2d2e_A           96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD  175 (250)
T ss_dssp             BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred             CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence            578888775421 111  1  11345778999999953578899999 99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh-cCeEEEEECCEEEEeeCcc
Q 046954           75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPD  128 (146)
Q Consensus        75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~  128 (146)
                      +.++..+.+.|+++++ .|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       176 ~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          176 IDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            9999999999999864 599999999999999888 5999999999999999876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.3e-34  Score=217.35  Aligned_cols=125  Identities=22%  Similarity=0.302  Sum_probs=110.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.||+.++...+  ....+++.++++.+++..++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus        89 tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~  166 (263)
T 2pjz_A           89 TVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV  166 (263)
T ss_dssp             BHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred             cHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence            6889998865332  23456788999999995247899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcC-eEEEEECCEEEEeeCccccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~  131 (146)
                      +.+.|++++   . |||++|||++++.++|| ++++|++|++++.|+++++.
T Consensus       167 l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          167 ISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             HHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            999999873   2 99999999999999999 99999999999999987764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=5.2e-34  Score=217.21  Aligned_cols=110  Identities=24%  Similarity=0.342  Sum_probs=100.0

Q ss_pred             HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      +++.++++.+++...+.++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+
T Consensus       141 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvii  219 (267)
T 2zu0_C          141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFII  219 (267)
T ss_dssp             HHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEE
T ss_pred             HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE
Confidence            4577899999995346788887 5999999999999999999999999999999999999999999999864 4999999


Q ss_pred             EecCHHHHHhh-cCeEEEEECCEEEEeeCcccc
Q 046954           99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +|||++++..+ ||++++|++|++++.|+++++
T Consensus       220 vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  252 (267)
T 2zu0_C          220 VTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  252 (267)
T ss_dssp             ECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred             EeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence            99999999886 899999999999999998765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=5.2e-33  Score=210.96  Aligned_cols=129  Identities=32%  Similarity=0.484  Sum_probs=106.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh-----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++..  .  ...+++.++++.+++. ++           .++++.+|||||||||+|||||+.+|++||||||
T Consensus       108 tv~enl~~~~~--~--~~~~~~~~~l~~~~l~-~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP  182 (260)
T 2ghi_A          108 TIKYNILYGKL--D--ATDEEVIKATKSAQLY-DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA  182 (260)
T ss_dssp             EHHHHHHTTCT--T--CCHHHHHHHHHHTTCH-HHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             CHHHHHhccCC--C--CCHHHHHHHHHHhCCH-HHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            68899988632  1  1244566777777763 22           2356789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      |+|||+.++..+.+.|++++ + |+|||+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus       183 ts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~  247 (260)
T 2ghi_A          183 TSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKLNGEY  247 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred             cccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence            99999999999999999985 3 899999999999885 59999999999999999998875433333

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-33  Score=209.96  Aligned_cols=125  Identities=34%  Similarity=0.539  Sum_probs=106.2

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++...   ....+++.++++.+++. ++.+           +++.+|||||||||+|||||+++|++||||||
T Consensus        91 tv~enl~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP  166 (243)
T 1mv5_A           91 TIRENLTYGLEG---DYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA  166 (243)
T ss_dssp             EHHHHTTSCTTS---CSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             cHHHHHhhhccC---CCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            688999886321   12345677888888875 3443           34679999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+|||+.++..+.+.|++++ + |+|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       167 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          167 TASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             SCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999986 4 999999999999885 599999999999999999887754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.98  E-value=6.5e-33  Score=220.90  Aligned_cols=134  Identities=22%  Similarity=0.331  Sum_probs=114.1

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCC-----------CChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE-----------ISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.+..     ....+++.++++.+++. ++.++++.+           |||||||||+|||||+.+|++||||||
T Consensus       109 tv~enl~~~~-----~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP  182 (390)
T 3gd7_A          109 TFRKNLDPNA-----AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP  182 (390)
T ss_dssp             EHHHHHCTTC-----CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred             CHHHHhhhcc-----ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            5788886432     12356788899999995 688999988           999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      |++||+..+..+.+.|+++.  .++|+|++|||++.+ ..||||++|++|+|++.|+++++.. +.+.+...|++
T Consensus       183 ts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~f~g  254 (390)
T 3gd7_A          183 SAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIG  254 (390)
T ss_dssp             HHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred             ccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence            99999999999999999864  389999999998655 5699999999999999999999864 44556666654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.98  E-value=8.1e-32  Score=200.91  Aligned_cols=132  Identities=23%  Similarity=0.376  Sum_probs=100.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++...     ...+....++.+++...          ..++++.+|||||||||+|||||+.+|+++||||||
T Consensus        84 tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt  158 (229)
T 2pze_A           84 TIKENIIFGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  158 (229)
T ss_dssp             CHHHHHHTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             CHHHHhhccCCc-----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence            789999886421     12223344444454210          122346899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHH
Q 046954           71 SALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR  140 (146)
Q Consensus        71 ~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~  140 (146)
                      +|||+.++..+.+. +.++. + |+|||++||+++++. .||++++|++|++++.|+++++......+...
T Consensus       159 s~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~  226 (229)
T 2pze_A          159 GYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNLQPDFSSK  226 (229)
T ss_dssp             TTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence            99999999999997 45553 3 899999999999886 59999999999999999998875433334333

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.97  E-value=2.3e-31  Score=221.14  Aligned_cols=127  Identities=35%  Similarity=0.502  Sum_probs=108.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      |++||+.++..   ....++++.++++.+++. ++.++           ++.+||||||||++|||||+++|+++|||||
T Consensus       432 tv~eni~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp  507 (582)
T 3b5x_A          432 TIANNIAYAAE---GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA  507 (582)
T ss_pred             cHHHHHhccCC---CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            78999998641   112356677888888774 33333           4579999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |++||+.+++.+.+.|+++. + |+|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus       508 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~  569 (582)
T 3b5x_A          508 TSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQD  569 (582)
T ss_pred             cccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence            99999999999999999985 3 899999999999886 69999999999999999999886543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.97  E-value=3.7e-32  Score=203.75  Aligned_cols=99  Identities=27%  Similarity=0.445  Sum_probs=87.5

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV---KLKKKHGMTIVMVSHSIKQIQRIADV  112 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~---~l~~~~g~tvi~itH~~~~~~~~~d~  112 (146)
                      .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.   ++.  .|+|||++||+++.+. .||+
T Consensus       121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~  197 (237)
T 2cbz_A          121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDV  197 (237)
T ss_dssp             ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSE
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCE
Confidence            467889999999999999999999999999999999999999999999985   443  3899999999999874 7999


Q ss_pred             EEEEECCEEEEeeCccccccCCCHH
Q 046954          113 VCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus       113 v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      +++|++|++++.|+++++......+
T Consensus       198 v~~l~~G~i~~~g~~~~~~~~~~~~  222 (237)
T 2cbz_A          198 IIVMSGGKISEMGSYQELLARDGAF  222 (237)
T ss_dssp             EEEEETTEEEEEECHHHHHHHTSHH
T ss_pred             EEEEeCCEEEEeCCHHHHhhccHHH
Confidence            9999999999999998875443333

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=3e-31  Score=220.77  Aligned_cols=126  Identities=30%  Similarity=0.509  Sum_probs=104.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++...    ..++++.++++..++.+          ...++++.+||||||||++|||||+++|+++||||||
T Consensus       432 tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt  507 (587)
T 3qf4_A          432 TIKENLKWGRED----ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT  507 (587)
T ss_dssp             EHHHHHTTTCSS----CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred             cHHHHHhccCCC----CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            689999886421    23344555555554421          2345678899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      ++||+.+.+.+.+.++++.  .|+|+|+|||+++.+. .||||++|++|++++.|+++++...
T Consensus       508 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          508 SSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             TTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999974  3899999999999885 7999999999999999999988654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.97  E-value=3.2e-31  Score=220.17  Aligned_cols=129  Identities=35%  Similarity=0.486  Sum_probs=106.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++..    ...++++.++++..++. ++.+           +++.+||||||||++|||||+++|+++|||||
T Consensus       430 tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEp  504 (578)
T 4a82_A          430 TVKENILLGRP----TATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA  504 (578)
T ss_dssp             BHHHHHGGGCS----SCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            68999988632    12345667777777663 2222           34568999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      |++||+.+...+.+.++++.  .++|+|+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus       505 ts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~~~~  569 (578)
T 4a82_A          505 TSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQGAY  569 (578)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred             cccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence            99999999999999999885  3799999999999985 49999999999999999999986544433

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.97  E-value=2.8e-31  Score=220.68  Aligned_cols=126  Identities=33%  Similarity=0.476  Sum_probs=107.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++..   ....++++.++++.+++. ++.+           +++.+||||||||++|||||+++|+++|||||
T Consensus       432 tv~eni~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp  507 (582)
T 3b60_A          432 TVANNIAYART---EEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA  507 (582)
T ss_dssp             BHHHHHHTTTT---SCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred             CHHHHHhccCC---CCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence            68999998641   112456678888888874 3333           34689999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |++||+.++..+.+.++++. + |+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus       508 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          508 TSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             TSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            99999999999999999985 3 899999999999885 6999999999999999999987543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-31  Score=222.93  Aligned_cols=113  Identities=20%  Similarity=0.274  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      ...+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+
T Consensus       445 ~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii  523 (608)
T 3j16_B          445 PQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI  523 (608)
T ss_dssp             HHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45567889999996 57899999999999999999999999999999999999999999999999999997666999999


Q ss_pred             EecCHHHHHhhcCeEEEEEC--CEEEEeeCcccccc
Q 046954           99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE  132 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~  132 (146)
                      ||||++++..+||||++|++  |+++..|+|+++..
T Consensus       524 vtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~  559 (608)
T 3j16_B          524 VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT  559 (608)
T ss_dssp             ECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred             EeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence            99999999999999999996  89999999988754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.97  E-value=5.6e-31  Score=221.81  Aligned_cols=135  Identities=30%  Similarity=0.409  Sum_probs=109.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~   77 (146)
                      ||.||+.+....    ....+..+.+..+++.....++++.+|||||||||+|||||+++|   ++|||||||+|||+.+
T Consensus       506 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~  581 (670)
T 3ux8_A          506 TVEDALDFFASI----PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD  581 (670)
T ss_dssp             BHHHHHHHTTTC----HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred             CHHHHHHHHHHh----hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence            355666554211    122456677888898644568899999999999999999999887   5999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHH
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      +..+.++|+++++ .|+|||+||||++.+ .+||||++|      ++|+|++.|+++++......+...|
T Consensus       582 ~~~i~~~l~~l~~-~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~  649 (670)
T 3ux8_A          582 IARLLDVLHRLVD-NGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY  649 (670)
T ss_dssp             HHHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHHHH
Confidence            9999999999975 499999999999987 569999999      8999999999998865444444444

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=2.4e-31  Score=221.71  Aligned_cols=129  Identities=33%  Similarity=0.555  Sum_probs=106.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCC-----------cCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++...    ..++++.++++.+++. ++.++.           +.+||||||||++|||||+++|+++|||||
T Consensus       444 tv~eni~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp  518 (598)
T 3qf4_B          444 TVKENLKYGNPG----ATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA  518 (598)
T ss_dssp             BHHHHHHSSSTT----CCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             cHHHHHhcCCCC----CCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            689999986321    1234566677776663 334443           368999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      |++||+.+...+.+.++++.  .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++......+
T Consensus       519 ts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~  583 (598)
T 3qf4_B          519 TSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFY  583 (598)
T ss_dssp             CTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHTTCHH
T ss_pred             ccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCCHH
Confidence            99999999999999999985  38999999999999865 9999999999999999999986544333

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.97  E-value=2e-32  Score=202.51  Aligned_cols=117  Identities=24%  Similarity=0.346  Sum_probs=99.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.||+.++...++.....+++.++++.+++. ++ ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~  171 (214)
T 1sgw_A           94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK  171 (214)
T ss_dssp             BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHH
T ss_pred             CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence            68899988644332112356788899999996 46 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      +.+.|++++++ |+|||++||+++++..+||+++++ .|+|
T Consensus       172 l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          172 VLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             HHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            99999999754 899999999999999999998865 5555

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=1.3e-30  Score=215.00  Aligned_cols=127  Identities=18%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||.+|+.+..... .......+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus       346 tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~  423 (538)
T 3ozx_A          346 TVQQYLENASKDA-LSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI  423 (538)
T ss_dssp             BHHHHHHHHCSST-TCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred             CHHHHHHHhhhhc-cchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence            5677876532111 111234567788999995 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEeeCccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDL  129 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~  129 (146)
                      +.++|++++++.|+|||+||||++++..+||||++|++  |.+...+++..
T Consensus       424 i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~  474 (538)
T 3ozx_A          424 VAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVT  474 (538)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHH
Confidence            99999999876799999999999999999999999986  44555555543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.97  E-value=1.9e-30  Score=218.56  Aligned_cols=116  Identities=24%  Similarity=0.388  Sum_probs=100.6

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      .+++.+|+.....++++.+|||||||||+|||||+++|+  +|||||||+|||+.++..+.++|+++++ .|.|||+|||
T Consensus       184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtH  262 (670)
T 3ux8_A          184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEH  262 (670)
T ss_dssp             HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeC
Confidence            358889986434689999999999999999999999998  9999999999999999999999999975 5999999999


Q ss_pred             CHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHH
Q 046954          102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      |++.+. .||+|++|      ++|++++.|+++++..........+
T Consensus       263 d~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~  307 (670)
T 3ux8_A          263 DEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY  307 (670)
T ss_dssp             CHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred             CHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence            999765 59999999      8999999999988755433343333

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.97  E-value=5e-30  Score=197.35  Aligned_cols=122  Identities=25%  Similarity=0.362  Sum_probs=94.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhh-----------cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------SKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+. +...     ....+..+++.+++. +..           ++++.+|||||||||+|||||+.+|++||||||
T Consensus       114 tv~enl~-~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP  186 (290)
T 2bbs_A          114 TIKENII-GVSY-----DEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP  186 (290)
T ss_dssp             BHHHHHH-TTCC-----CHHHHHHHHHHTTCH-HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred             cHHHHhh-Cccc-----chHHHHHHHHHhChH-HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence            6788987 4211     122334455555553 222           234579999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           70 TSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      |+|||+.++..+.+.+ .++. + |+|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus       187 ts~LD~~~~~~i~~~ll~~~~-~-~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          187 FGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             TTTCCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhh-C-CCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence            9999999999999974 4553 3 899999999999885 599999999999999999887743

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=7.9e-30  Score=220.08  Aligned_cols=122  Identities=29%  Similarity=0.431  Sum_probs=107.9

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .++.++++.+|+.....++++.+|||||||||+|||||+.+|   ++|||||||+|||+...+.+++.|.++++ .|.||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TV  861 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTV  861 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence            456778999999643467889999999999999999999875   79999999999999999999999999975 59999


Q ss_pred             EEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           97 VMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      |+||||++.+. .||+|++|      ++|+|++.|+++++.....+++..|++
T Consensus       862 IvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~  913 (916)
T 3pih_A          862 IVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK  913 (916)
T ss_dssp             EEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHT
T ss_pred             EEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHH
Confidence            99999999885 49999999      899999999999987665678777764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.96  E-value=6.1e-30  Score=211.07  Aligned_cols=112  Identities=26%  Similarity=0.355  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+
T Consensus       379 ~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~  457 (538)
T 1yqt_A          379 NFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV  457 (538)
T ss_dssp             HHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            34577889999995 67899999999999999999999999999999999999999999999999999997656999999


Q ss_pred             EecCHHHHHhhcCeEEEEEC--CEEEEeeCccccc
Q 046954           99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLS  131 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~  131 (146)
                      ||||++++..+||||++|++  |+++..|+++++.
T Consensus       458 vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~  492 (538)
T 1yqt_A          458 VEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR  492 (538)
T ss_dssp             ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             EeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence            99999999999999999986  7888889987764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.96  E-value=1.3e-29  Score=211.45  Aligned_cols=112  Identities=25%  Similarity=0.348  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+.+.++++.+++. ++.++++.+|||||||||+|||||+++|++|||||||+|||+.++..+.++|++++++.|.|||+
T Consensus       449 ~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~  527 (607)
T 3bk7_A          449 NFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV  527 (607)
T ss_dssp             HHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            34577889999996 57899999999999999999999999999999999999999999999999999997666999999


Q ss_pred             EecCHHHHHhhcCeEEEEEC--CEEEEeeCccccc
Q 046954           99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLS  131 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~  131 (146)
                      ||||++++..+||||++|++  |+++..|+++++.
T Consensus       528 vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~  562 (607)
T 3bk7_A          528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR  562 (607)
T ss_dssp             ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             EeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence            99999999999999999986  7888889987764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.96  E-value=2.9e-30  Score=230.26  Aligned_cols=129  Identities=33%  Similarity=0.542  Sum_probs=109.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.++...  ...+++++.++++..++.+..          ....+.+||||||||++|||||+++|++|||||||
T Consensus      1168 TIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT 1245 (1321)
T 4f4c_A         1168 SIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245 (1321)
T ss_dssp             EHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred             cHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcc
Confidence            689999988532  223567788888888773211          12235689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+.+.+.+.|+++.  .|+|+|+|+|.++.+.. ||+|+||++|+|++.|+++++...+
T Consensus      1246 SaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A         1246 SALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp             CSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence            9999999999999999875  38999999999999875 9999999999999999999986543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.96  E-value=3.8e-29  Score=223.03  Aligned_cols=127  Identities=35%  Similarity=0.527  Sum_probs=108.2

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++|||.||..    ..+++++.++++..++.+..          ....+.+||||||||++||||++++|+++||||||
T Consensus       507 TI~eNI~~g~~----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t  582 (1321)
T 4f4c_A          507 TIEENISLGKE----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT  582 (1321)
T ss_dssp             EHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             chhHHHhhhcc----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence            68999999742    23567788888887763211          22346789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK  134 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  134 (146)
                      |+||+.+...+.+.|.++.+  |+|+|+|||+++.+. .||+|++|++|+|++.|+.+++....
T Consensus       583 SaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~~  643 (1321)
T 4f4c_A          583 SALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQQ  643 (1321)
T ss_dssp             TTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHhh
Confidence            99999999999999999864  899999999999885 59999999999999999999986543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.96  E-value=1.1e-28  Score=205.91  Aligned_cols=97  Identities=24%  Similarity=0.433  Sum_probs=91.4

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      ++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+||
T Consensus       208 ~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivs  285 (607)
T 3bk7_A          208 KFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVE  285 (607)
T ss_dssp             CHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             HHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            467889999996 578999999999999999999999999999999999999999999999999999976 499999999


Q ss_pred             cCHHHHHhhcCeEEEEECC
Q 046954          101 HSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G  119 (146)
                      ||++++..+||||++|+++
T Consensus       286 Hdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          286 HDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             SCHHHHHHHCSEEEEEESC
T ss_pred             cChHHHHhhCCEEEEECCC
Confidence            9999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.96  E-value=2.4e-28  Score=211.60  Aligned_cols=121  Identities=20%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+  ...+  . .+++.++++.+|+...+.++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus       512 tv~e~l~~--~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~  586 (986)
T 2iw3_A          512 SVLDFVFE--SGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW  586 (986)
T ss_dssp             BHHHHHHT--TCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred             cHHHHHHH--hhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence            46677765  1111  1 56788899999996457899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL  130 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  130 (146)
                      +.+.|++    .|.|||+||||++++..+||+|++|++|+++ ..|+++++
T Consensus       587 l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~  633 (986)
T 2iw3_A          587 LVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF  633 (986)
T ss_dssp             HHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred             HHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence            9999987    3899999999999999999999999999996 57887665

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.96  E-value=8.9e-29  Score=220.24  Aligned_cols=129  Identities=35%  Similarity=0.572  Sum_probs=105.0

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||+||+.++.....  ...+++.+.++..++. ++.+           ..+.+|||||||||+|||||+.+|++||||||
T Consensus      1122 ti~eNi~~~~~~~~--~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEp 1198 (1284)
T 3g5u_A         1122 SIAENIAYGDNSRV--VSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198 (1284)
T ss_dssp             BHHHHHTCCCSSCC--CCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESC
T ss_pred             cHHHHHhccCCCCC--CCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            68999998743221  2345566666665552 2222           23568999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH  135 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  135 (146)
                      |++||+.+.+.+.+.|++..  .|+|+|+|||+++++.. ||||++|++|++++.|+++++.....
T Consensus      1199 Ts~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A         1199 TSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp             SSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred             cccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCC
Confidence            99999999999999998863  48999999999999854 99999999999999999999865543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.95  E-value=5e-28  Score=208.69  Aligned_cols=120  Identities=32%  Similarity=0.438  Sum_probs=103.6

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      +..++++.++|.....++++.+|||||||||+||++|+.+|   ++|||||||+|||+.++..+++.|.++++ .|.|||
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI  902 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  902 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            45678999999632578899999999999999999999865   99999999999999999999999999975 599999


Q ss_pred             EEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954           98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      +||||++++ .+||+|++|      ++|++++.|+++++......+...|+
T Consensus       903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l  952 (972)
T 2r6f_A          903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL  952 (972)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred             EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence            999999987 579999999      79999999999987654333444443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.95  E-value=3.1e-28  Score=208.73  Aligned_cols=121  Identities=29%  Similarity=0.412  Sum_probs=105.2

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI   96 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~---p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv   96 (146)
                      .++.++++.++|.....++++.+|||||||||+||++|+.+   |++|||||||+|||+..+..+.++|.++++ .|.||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tV  786 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTV  786 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence            45778899999963246889999999999999999999996   799999999999999999999999999975 59999


Q ss_pred             EEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954           97 VMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        97 i~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      |+||||++++ ..||+|++|      ++|+|++.|+++++......++..|+
T Consensus       787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l  837 (842)
T 2vf7_A          787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL  837 (842)
T ss_dssp             EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred             EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence            9999999999 789999999      79999999999988654333444443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=3.5e-28  Score=200.59  Aligned_cols=97  Identities=23%  Similarity=0.429  Sum_probs=91.1

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      ++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+||
T Consensus       138 ~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vs  215 (538)
T 1yqt_A          138 KLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVE  215 (538)
T ss_dssp             CHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             HHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            467889999996 578999999999999999999999999999999999999999999999999999976 599999999


Q ss_pred             cCHHHHHhhcCeEEEEECC
Q 046954          101 HSIKQIQRIADVVCLLVNG  119 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G  119 (146)
                      ||++++..+||||++|++|
T Consensus       216 Hd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          216 HDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             SCHHHHHHHCSEEEEEEEE
T ss_pred             CCHHHHHHhCCEEEEEcCc
Confidence            9999999999999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.95  E-value=3.1e-28  Score=216.77  Aligned_cols=126  Identities=38%  Similarity=0.570  Sum_probs=103.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++..    ....+++.++++..++.+          ......+.+||||||||++|||||+.+|++|||||||
T Consensus       479 ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt  554 (1284)
T 3g5u_A          479 TIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT  554 (1284)
T ss_dssp             CHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            78999998742    123445555555554421          1123456799999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA  133 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  133 (146)
                      |+||+.+.+.+.+.++++.  .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       555 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~  614 (1284)
T 3g5u_A          555 SALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE  614 (1284)
T ss_dssp             CSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999998874  38999999999999966 999999999999999999887543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-27  Score=199.44  Aligned_cols=101  Identities=23%  Similarity=0.416  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+
T Consensus       199 ~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~  276 (608)
T 3j16_B          199 PEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVIC  276 (608)
T ss_dssp             HHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEE
T ss_pred             HHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            35688899999996 578999999999999999999999999999999999999999999999999999975 4999999


Q ss_pred             EecCHHHHHhhcCeEEEEECCEE
Q 046954           99 VSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        99 itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ||||++++..+||||++|++|..
T Consensus       277 vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          277 VEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             ECSCHHHHHHHCSEEEEEESCTT
T ss_pred             EeCCHHHHHHhCCEEEEEeCCcc
Confidence            99999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=2.5e-27  Score=195.41  Aligned_cols=97  Identities=22%  Similarity=0.386  Sum_probs=90.5

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      ++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++ + |+|||+||
T Consensus       118 ~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vs  194 (538)
T 3ozx_A          118 KKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVD  194 (538)
T ss_dssp             CHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEEC
T ss_pred             HHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEE
Confidence            466789999995 57899999999999999999999999999999999999999999999999999995 4 89999999


Q ss_pred             cCHHHHHhhcCeEEEEECCE
Q 046954          101 HSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G~  120 (146)
                      ||++++..+||+|++|++|.
T Consensus       195 Hdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          195 HDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             SCHHHHHHHCSEEEEEEEET
T ss_pred             eChHHHHhhCCEEEEecCCc
Confidence            99999999999999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=4.1e-27  Score=203.25  Aligned_cols=109  Identities=29%  Similarity=0.402  Sum_probs=97.6

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      ..+.+..+|+.....++++.+|||||+|||+|||||+++|+  +|||||||+|||+.....+.++|+++++ .|.|||+|
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivV  522 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVV  522 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEE
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence            44567788986323688999999999999999999999887  9999999999999999999999999975 59999999


Q ss_pred             ecCHHHHHhhcCeEEEE------ECCEEEEeeCcccccc
Q 046954          100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE  132 (146)
Q Consensus       100 tH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~  132 (146)
                      |||++.+.. ||+|++|      ++|++++.|+++++..
T Consensus       523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~  560 (916)
T 3pih_A          523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK  560 (916)
T ss_dssp             CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred             eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence            999988765 9999999      8999999999998754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.94  E-value=7.5e-27  Score=201.42  Aligned_cols=107  Identities=26%  Similarity=0.396  Sum_probs=96.5

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      +.+..+||+.-..++++.+|||||+|||+||++|+.+|  ++|||||||+|||+...+.+++.|+++++ .|.|||+|+|
T Consensus       486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeH  564 (972)
T 2r6f_A          486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEH  564 (972)
T ss_dssp             HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECC
T ss_pred             HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence            35788999532268999999999999999999999985  99999999999999999999999999964 6999999999


Q ss_pred             CHHHHHhhcCeEEEE------ECCEEEEeeCcccccc
Q 046954          102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE  132 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~  132 (146)
                      |++++. .||+|++|      ++|++++.|+++++..
T Consensus       565 dl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          565 DEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             CHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             CHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            999875 69999999      7999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.94  E-value=3.8e-27  Score=204.10  Aligned_cols=104  Identities=22%  Similarity=0.318  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954           19 ENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV   97 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi   97 (146)
                      .+++.++++.+|+...+ .++++++|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++    |.|||
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVI  952 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVI  952 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEE
T ss_pred             HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEE
Confidence            45678899999996444 58899999999999999999999999999999999999999999998887653    67999


Q ss_pred             EEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           98 MVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                      +||||++++..+||++++|++|+++..|+
T Consensus       953 iISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          953 IITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             EEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999987765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.94  E-value=1.6e-26  Score=162.00  Aligned_cols=84  Identities=29%  Similarity=0.355  Sum_probs=75.4

Q ss_pred             hcCCcCCCChhHHHHHHHH------HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           36 LSKTGAEISVGQAQRVALA------RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia------~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      .++++.+||||||||++||      |||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||++ .+..+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE-ELKDA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG-GGGGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH-HHHHh
Confidence            4678899999999999876      899999999999999999999999999999999865 489999999998 56789


Q ss_pred             cCeEEEE--ECCEE
Q 046954          110 ADVVCLL--VNGEI  121 (146)
Q Consensus       110 ~d~v~~l--~~G~i  121 (146)
                      ||++++|  ++|..
T Consensus       129 ~d~ii~l~~~~g~s  142 (148)
T 1f2t_B          129 ADHVIRISLENGSS  142 (148)
T ss_dssp             CSEEEEEEEETTEE
T ss_pred             CCEEEEEEcCCCeE
Confidence            9999999  56643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=1.2e-26  Score=183.40  Aligned_cols=85  Identities=20%  Similarity=0.346  Sum_probs=78.8

Q ss_pred             cCCcCCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           37 SKTGAEISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+..+..+.+.|.++++ .|.|||+||||++. ...|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence            5678899999999999999999      79999999999999999999999999999965 59999999999988 6789


Q ss_pred             CeEEEEECCEEEE
Q 046954          111 DVVCLLVNGEIVE  123 (146)
Q Consensus       111 d~v~~l~~G~i~~  123 (146)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.93  E-value=3.9e-25  Score=189.61  Aligned_cols=107  Identities=31%  Similarity=0.415  Sum_probs=96.3

Q ss_pred             HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954           25 LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        25 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      .+..+|+..-..++++.+|||||+|||+||++|+.+|  ++|||||||++||+...+.+.++|+++++ .|.|||+|+|+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence            5778899532268999999999999999999999999  59999999999999999999999999975 69999999999


Q ss_pred             HHHHHhhcCeEEEE------ECCEEEEeeCccccccC
Q 046954          103 IKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA  133 (146)
Q Consensus       103 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  133 (146)
                      ++.+ ..||+|++|      ++|++++.|+++++...
T Consensus       441 l~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          441 LDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            9866 579999999      79999999999988654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.89  E-value=3.4e-23  Score=164.86  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             CChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE----
Q 046954           43 ISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL----  116 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l----  116 (146)
                      ||||||||++||++|+.+|  ++|||||||+|||+..+..+.+.|++++ + |.|||+|||+++.+ .+||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~-~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIA-ARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999996 3 89999999999765 679999999    


Q ss_pred             ECCEEEEee
Q 046954          117 VNGEIVEVL  125 (146)
Q Consensus       117 ~~G~i~~~g  125 (146)
                      ++|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            999987653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.1e-25  Score=178.26  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHH--HhcCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART--LANEPEV----LLLDE-PTSALDPISTQNIEDVLVKLKKKHGM   94 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~a--l~~~p~l----lllDE-Pt~~LD~~~~~~~~~~l~~l~~~~g~   94 (146)
                      +..+++.+|+. +..+  +.+|||||||||+||||  |+.+|++    +|||| ||++||+. ...+.+++    ++.|.
T Consensus       218 ~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~  289 (460)
T 2npi_A          218 KQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNV  289 (460)
T ss_dssp             BCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTC
T ss_pred             HHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCC
Confidence            44567888886 3444  78999999999999999  9999999    99999 99999999 44444443    34588


Q ss_pred             eEEEEecCHH------HHHhhcCe-----EEEEE-CCEEEEeeCccccc
Q 046954           95 TIVMVSHSIK------QIQRIADV-----VCLLV-NGEIVEVLKPDLLS  131 (146)
Q Consensus        95 tvi~itH~~~------~~~~~~d~-----v~~l~-~G~i~~~g~~~~~~  131 (146)
                      |+|+|||+.+      ++..+|||     |++|+ +|+++ .|+++++.
T Consensus       290 tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          290 NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence            9999999987      88899999     99999 99999 88887664

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.87  E-value=4.2e-22  Score=163.43  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             CCcCCC-ChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           38 KTGAEI-SVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        38 ~~~~~L-SgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      +++.+| ||||+|||+||+||+.+|  ++|||||||+|||+.++..+.+.|+++++  |.|||+|||+++.+. +||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEE
Confidence            456788 999999999999999999  99999999999999999999999999974  899999999998775 699999


Q ss_pred             EEECCE
Q 046954          115 LLVNGE  120 (146)
Q Consensus       115 ~l~~G~  120 (146)
                      +|++|.
T Consensus       469 ~~~~~~  474 (517)
T 4ad8_A          469 KVEKQV  474 (517)
T ss_dssp             EEECCE
T ss_pred             EEeccc
Confidence            996653

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.86  E-value=1.6e-21  Score=139.78  Aligned_cols=82  Identities=21%  Similarity=0.192  Sum_probs=70.5

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           36 LSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      ..+++..||||||||++||++++.    +|+++||||||+|||+.+...+.+.|+++.+  +.++|+|||+... ..+||
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad  134 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANAD  134 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCS
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCC
Confidence            345678999999999999999974    4699999999999999999999999999853  5789999999754 57899


Q ss_pred             eEEEE--ECCE
Q 046954          112 VVCLL--VNGE  120 (146)
Q Consensus       112 ~v~~l--~~G~  120 (146)
                      +++.+  .+|.
T Consensus       135 ~i~~v~~~~g~  145 (173)
T 3kta_B          135 KIIGVSMRDGV  145 (173)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEecCCE
Confidence            99855  4664

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.86  E-value=6.3e-22  Score=154.74  Aligned_cols=80  Identities=28%  Similarity=0.357  Sum_probs=71.6

Q ss_pred             hcCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           36 LSKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        36 ~~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      .++++.+|||||||      |+++|++++.+|++|||||||++||+..+..+.+.|.++.+ .|.|||+||||.+ +..+
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~  319 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDA  319 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHh
Confidence            45678999999999      67788888899999999999999999999999999999865 4889999999965 6789


Q ss_pred             cCeEEEEE
Q 046954          110 ADVVCLLV  117 (146)
Q Consensus       110 ~d~v~~l~  117 (146)
                      ||++++|+
T Consensus       320 ~d~~~~l~  327 (339)
T 3qkt_A          320 ADHVIRIS  327 (339)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999985

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.85  E-value=1.3e-21  Score=151.90  Aligned_cols=91  Identities=22%  Similarity=0.301  Sum_probs=75.9

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954           36 LSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d  111 (146)
                      .+.++.+||||||||++||+||+    .+|+++||||||++||+..+..+.+.|.++. + |.++|++||+++ +..+||
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d  289 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKI-VMEAAD  289 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCS
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCc
Confidence            45667899999999999999997    6889999999999999999999999999984 3 899999999964 667899


Q ss_pred             eE--EEEECCEE-EEeeCccc
Q 046954          112 VV--CLLVNGEI-VEVLKPDL  129 (146)
Q Consensus       112 ~v--~~l~~G~i-~~~g~~~~  129 (146)
                      ++  ++|.+|.- +...+.++
T Consensus       290 ~~~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          290 LLHGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEEEEESSSCEEEEECCC--
T ss_pred             eEEEEEEeCCEEEEEEEEcch
Confidence            87  88888864 33334433

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.84  E-value=1.1e-21  Score=154.72  Aligned_cols=86  Identities=28%  Similarity=0.278  Sum_probs=77.8

Q ss_pred             cCCcC-CCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954           37 SKTGA-EISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        37 ~~~~~-~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~  106 (146)
                      ++++. .||||||||++||++|+         .+|++|||||||++||+..+..+.+.+.++.    .|+|++||. +. 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc-
Confidence            45666 79999999999999999         8999999999999999999999999998762    699999994 44 


Q ss_pred             HhhcCeEEEEECCEEEEeeCcccc
Q 046954          107 QRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       107 ~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                        .||++++|++|+++..|+++++
T Consensus       333 --~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 --GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             --TCSEEEEEETTEEEECCCTTTS
T ss_pred             --cCCEEEEEECCEEEecCCHHHH
Confidence              8999999999999999998876

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.79  E-value=1.7e-20  Score=133.46  Aligned_cols=68  Identities=13%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------------STQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~----------------~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      ....|+|||||++||||++.+|++++|||||++||+.                ....+.+.|++++++ |.|+|++|||+
T Consensus        81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~  159 (171)
T 4gp7_A           81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP  159 (171)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence            4567999999999999999999999999999999999                568999999998765 99999999999


Q ss_pred             HHHHh
Q 046954          104 KQIQR  108 (146)
Q Consensus       104 ~~~~~  108 (146)
                      +++..
T Consensus       160 ~~~~~  164 (171)
T 4gp7_A          160 EEVEE  164 (171)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            99876

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.79  E-value=6.1e-20  Score=131.84  Aligned_cols=81  Identities=9%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             hhcCCcCCCChhHHHHHHHHHH-----HhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe---cCHH
Q 046954           35 FLSKTGAEISVGQAQRVALART-----LANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKHGMTIVMVS---HSIK  104 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~a-----l~~~p~llllDE--Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it---H~~~  104 (146)
                      ..++++.+||||||||++||+|     ++.+|+++||||  ||++||+...+.+.+.+.+    .+.|+|++|   |+.+
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~  144 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHP  144 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSH
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCch
Confidence            3566788999999999999996     999999999999  9999999999999888765    377788888   5999


Q ss_pred             HHHhhcCeEEEEECCEEEE
Q 046954          105 QIQRIADVVCLLVNGEIVE  123 (146)
Q Consensus       105 ~~~~~~d~v~~l~~G~i~~  123 (146)
                      ++..+|+|    .+|++++
T Consensus       145 ~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          145 LVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHHHHTC----TTCEEEE
T ss_pred             HHHHHHhc----CCcEEEE
Confidence            99999998    5566654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.78  E-value=3.2e-19  Score=140.92  Aligned_cols=77  Identities=27%  Similarity=0.419  Sum_probs=68.9

Q ss_pred             CCcCCCChhHHHHH------HHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954           38 KTGAEISVGQAQRV------ALARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA  110 (146)
Q Consensus        38 ~~~~~LSgG~~qrv------~ia~al~~~-p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~  110 (146)
                      .++..|||||+||+      ++|++++.+ |+++||||||++||+..+..+.+.|.++. + +.+||+|||+++ +..+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRE-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGG-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHH-HHhhC
Confidence            56679999999988      567899999 99999999999999999999999999874 2 569999999986 67899


Q ss_pred             CeEEEEE
Q 046954          111 DVVCLLV  117 (146)
Q Consensus       111 d~v~~l~  117 (146)
                      |++++|+
T Consensus       353 d~~~~l~  359 (371)
T 3auy_A          353 DVIINVK  359 (371)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999997

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.77  E-value=1e-18  Score=140.26  Aligned_cols=78  Identities=22%  Similarity=0.243  Sum_probs=69.4

Q ss_pred             CCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954           38 KTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV  113 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v  113 (146)
                      +++..|||||||+++||++|+    .+|+++||||||++||+..+..+.+.|.++.+ .|.++|+|||+... ...||++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~  406 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDAL  406 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEE
Confidence            445679999999999999999    58999999999999999999999999998853 37899999999654 5679999


Q ss_pred             EEEE
Q 046954          114 CLLV  117 (146)
Q Consensus       114 ~~l~  117 (146)
                      +++.
T Consensus       407 ~~~~  410 (430)
T 1w1w_A          407 VGVY  410 (430)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.68  E-value=1.1e-17  Score=137.47  Aligned_cols=85  Identities=19%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEecCH-----
Q 046954           34 SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI-----STQNIEDVLVKLKKKHGMTIVMVSHSI-----  103 (146)
Q Consensus        34 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~-----~~~~~~~~l~~l~~~~g~tvi~itH~~-----  103 (146)
                      .+.+.++.+|||||+||+++|+++..+|+++|+| ||++||+.     .+..+.++++.+++ .|+|+|++||+.     
T Consensus       345 ~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~  422 (525)
T 1tf7_A          345 KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGA  422 (525)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCC
T ss_pred             EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCc
Confidence            3566778899999999999999999999999999 99999999     99999999999864 599999999998     


Q ss_pred             -----HHHHhhcCeEEEEECCE
Q 046954          104 -----KQIQRIADVVCLLVNGE  120 (146)
Q Consensus       104 -----~~~~~~~d~v~~l~~G~  120 (146)
                           ..+..+||+|++|++|+
T Consensus       423 ~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          423 HSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             CSSCSSCCTTTCSEEEEEEEEE
T ss_pred             ccccCcccceeeeEEEEEEEEE
Confidence                 77888999999999886

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=1.1e-17  Score=122.81  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954           46 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus        46 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i  121 (146)
                      ||||||+|||||+.+|++|||||||++    ++..+.+.|+++ + .|+||| +|||++++..    ....++|..
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~~  172 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGLR  172 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CCH
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence            999999999999999999999999999    899999999988 4 489999 9999987654    344567754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.57  E-value=3.1e-15  Score=129.84  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=75.2

Q ss_pred             CcCCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           39 TGAEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      ....+|+|++++..+|+++  +.+|+++||||||+|+|+.....+ ..++..+.++.|+++|++||+.+.+ .+||++..
T Consensus       718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~  796 (934)
T 3thx_A          718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPT  796 (934)
T ss_dssp             -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTT
T ss_pred             HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccce
Confidence            3457899999999999988  999999999999999999999888 6677777654599999999997654 78999999


Q ss_pred             EECCEEEEeeCcccc
Q 046954          116 LVNGEIVEVLKPDLL  130 (146)
Q Consensus       116 l~~G~i~~~g~~~~~  130 (146)
                      +++|++...++.+++
T Consensus       797 v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          797 VNNLHVTALTTEETL  811 (934)
T ss_dssp             EEEEEEEEEEETTEE
T ss_pred             eEeeEEEEEecCCcE
Confidence            999999888777654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.56  E-value=1.2e-14  Score=110.82  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=66.1

Q ss_pred             CcCCCChhH-HHHHHHHHHHhcCCCEEEeeCCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEecCH--H----
Q 046954           39 TGAEISVGQ-AQRVALARTLANEPEVLLLDEPTS---A---LDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI--K----  104 (146)
Q Consensus        39 ~~~~LSgG~-~qrv~ia~al~~~p~llllDEPt~---~---LD~-~~~~~~~~~l~~l~~~~g~tvi~itH~~--~----  104 (146)
                      .+..+|.++ +|++. |+++..+|+++|+||||+   +   +|. .....+.+.|++++++.|+|||++||+.  +    
T Consensus       126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~  204 (296)
T 1cr0_A          126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA  204 (296)
T ss_dssp             CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------
T ss_pred             CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccc
Confidence            446789999 67777 999999999999999999   5   555 6778899999999877799999999995  5    


Q ss_pred             ----------------HHHhhcCeEEEEECCEE
Q 046954          105 ----------------QIQRIADVVCLLVNGEI  121 (146)
Q Consensus       105 ----------------~~~~~~d~v~~l~~G~i  121 (146)
                                      .+..+||+|++|++|+.
T Consensus       205 ~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          205 HEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ----------CCC---CHHHHCSEEEEEEEC--
T ss_pred             cccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                            68889999999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.52  E-value=3.6e-16  Score=125.26  Aligned_cols=97  Identities=7%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChh--HHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVG--QAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKL   88 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG--~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l   88 (146)
                      ++.++++.+++. +. +..+. ||+|  |+||++||++|+.          +|+++++||||+|||+..+..+.+.++++
T Consensus       136 ~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l  212 (413)
T 1tq4_A          136 PPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN  212 (413)
T ss_dssp             CHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence            467888988884 33 33343 9999  9999999999999          99999999999999999999999999998


Q ss_pred             HH----hc----CCeEEEEecCHHH--HHhhcCeEE-EEECCE
Q 046954           89 KK----KH----GMTIVMVSHSIKQ--IQRIADVVC-LLVNGE  120 (146)
Q Consensus        89 ~~----~~----g~tvi~itH~~~~--~~~~~d~v~-~l~~G~  120 (146)
                      .+    +.    ..+|+++||+++.  +.+++|++. .|..|+
T Consensus       213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            52    22    3678899999987  999999985 555554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.51  E-value=1.6e-16  Score=115.85  Aligned_cols=80  Identities=9%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L----D~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      ++.+|+ ..+.++++..||           +|+.+|++++|||||+++    |+..++.+.+.+++++++.|.|+|++||
T Consensus       119 l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH  186 (207)
T 1znw_A          119 VDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR  186 (207)
T ss_dssp             CCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred             eCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence            445555 346677888888           999999999999999998    7889999999999997666999999999


Q ss_pred             CHHHHHhhcCeEEEEE
Q 046954          102 SIKQIQRIADVVCLLV  117 (146)
Q Consensus       102 ~~~~~~~~~d~v~~l~  117 (146)
                      |++++..+||||++|.
T Consensus       187 dl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          187 RLESACAELVSLLVGT  202 (207)
T ss_dssp             SHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999999984

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.48  E-value=8.3e-14  Score=121.96  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~-~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      ...+.+|+++++ +++|++++.+|+++|||||++|+|+... ..++.++..++++.|+++|++||+++.+..++|++.++
T Consensus       847 ~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~  925 (1022)
T 2o8b_B          847 SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR  925 (1022)
T ss_dssp             ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred             hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence            345677887775 9999999999999999999999999985 55788999987545899999999999999999999887


Q ss_pred             ECCEEE
Q 046954          117 VNGEIV  122 (146)
Q Consensus       117 ~~G~i~  122 (146)
                       +|++.
T Consensus       926 -~g~~~  930 (1022)
T 2o8b_B          926 -LGHMA  930 (1022)
T ss_dssp             -EEEEE
T ss_pred             -cCeEE
Confidence             58876

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.43  E-value=1.4e-13  Score=119.38  Aligned_cols=76  Identities=13%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV  113 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v  113 (146)
                      .....+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++..+.++.|+++|++||+++.+ .++|+.
T Consensus       729 l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~  805 (918)
T 3thx_B          729 IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY  805 (918)
T ss_dssp             -----CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred             HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence            445678899999999999999 8999999999999999999999987 777777655699999999998765 566654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.43  E-value=3.9e-13  Score=97.96  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             CCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCH--------HHHHhh
Q 046954           42 EISVGQAQRVALARTLANEPE--VLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSI--------KQIQRI  109 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~--llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~--------~~~~~~  109 (146)
                      ..|.++.++...+.+...+|+  ++++||||+++  |+.....+.+.|++++++.|+|||+++|+.        ..+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            348999988888888888999  99999999887  999999999999999877799999999999        458899


Q ss_pred             cCeEEEEECC
Q 046954          110 ADVVCLLVNG  119 (146)
Q Consensus       110 ~d~v~~l~~G  119 (146)
                      ||+|++|+..
T Consensus       183 ~d~vi~l~~~  192 (235)
T 2w0m_A          183 ADGIIRFRRM  192 (235)
T ss_dssp             CSEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            9999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.36  E-value=1.4e-12  Score=98.78  Aligned_cols=80  Identities=10%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEE
Q 046954           24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS--ALDPIST---QNIEDVLVKLKKKHGMTIVM   98 (146)
Q Consensus        24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~--~LD~~~~---~~~~~~l~~l~~~~g~tvi~   98 (146)
                      .+++.+.+. +..++++..||+||+|++   ++++.+|+++++|||++  ++|+...   ..+++.|.+++++.|+|||+
T Consensus       101 ~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~  176 (279)
T 1nlf_A          101 AVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF  176 (279)
T ss_dssp             HHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             hccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence            345666664 345678899999998764   68889999999999999  9998554   88888899987667999999


Q ss_pred             EecCHHHHH
Q 046954           99 VSHSIKQIQ  107 (146)
Q Consensus        99 itH~~~~~~  107 (146)
                      ++|+.....
T Consensus       177 i~H~~~~~~  185 (279)
T 1nlf_A          177 LHHASKGAA  185 (279)
T ss_dssp             EEEC-----
T ss_pred             EecCCCccc
Confidence            999987653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.33  E-value=1.2e-13  Score=107.75  Aligned_cols=67  Identities=13%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      |||+||++||+||..+|+++++|||++.       .+.+.|+.+.. .+.|+|+++|+.+ +...+||+++|.+|.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSN  291 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence            8999999999999999999999999982       35677777753 2458999999998 778899999998885

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.32  E-value=3.5e-13  Score=103.88  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             HHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---
Q 046954           27 SLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---  101 (146)
Q Consensus        27 ~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---  101 (146)
                      +.+|+. +..++++.+||   |||++||||++.+|+  +|+|| ||+|||+..+      ++++.++.|.|+|++||   
T Consensus       190 dt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~  258 (302)
T 3b9q_A          190 DTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDG  258 (302)
T ss_dssp             CCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSS
T ss_pred             hcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCC
Confidence            334553 34456677899   999999999999999  99999 9999999865      34555456999999999   


Q ss_pred             ------CHHHHHhhcCeEEEEECCEE
Q 046954          102 ------SIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus       102 ------~~~~~~~~~d~v~~l~~G~i  121 (146)
                            .++.+..++..|.++..|+.
T Consensus       259 ~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          259 SARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             CSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CCccChheehHHHHCCCEEEEeCCCC
Confidence                  67778788899999999974

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.25  E-value=2.4e-12  Score=101.43  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             HcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec----
Q 046954           28 LADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH----  101 (146)
Q Consensus        28 ~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH----  101 (146)
                      .+|+. +..++++.+||   +||++||||++.+|+  +|+|| ||+|||+..+.      +++.+..|.|+|++||    
T Consensus       248 t~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~  316 (359)
T 2og2_A          248 TSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGS  316 (359)
T ss_dssp             CCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTC
T ss_pred             hcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCccc
Confidence            34553 34455677899   999999999999999  99999 99999998653      4455446999999999    


Q ss_pred             -----CHHHHHhhcCeEEEEECCEE
Q 046954          102 -----SIKQIQRIADVVCLLVNGEI  121 (146)
Q Consensus       102 -----~~~~~~~~~d~v~~l~~G~i  121 (146)
                           .++.+..++..|.++..|+.
T Consensus       317 ~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          317 ARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             SCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             ccccHHHHHHHHhCCCEEEEeCCCC
Confidence                 56777788899999999964

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.24  E-value=1.4e-14  Score=111.92  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      .+.+.++.+ ++. ..+  +..||||||||   |||++.+|++||    |++||+.+...+..               +|
T Consensus       183 ~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------lt  236 (305)
T 2v9p_A          183 ACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LH  236 (305)
T ss_dssp             HHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GT
T ss_pred             HHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------Hh
Confidence            345555553 432 234  77999999999   999999999999    99999999988852               18


Q ss_pred             cCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954          101 HSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      |++..+ ..||+| +|++|++++.|+++++
T Consensus       237 H~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          237 SRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             TTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             CCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence            998765 679999 9999999999998776

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.23  E-value=3.5e-11  Score=87.12  Aligned_cols=101  Identities=10%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHcCCCh-hhh-cCCcCCCChhH--HHHHHHHHHHhcC-CCEEEeeCCCCCCCHHH--------HHHHHHHH
Q 046954           19 ENEVYKLLSLADLDS-SFL-SKTGAEISVGQ--AQRVALARTLANE-PEVLLLDEPTSALDPIS--------TQNIEDVL   85 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~-~~~-~~~~~~LSgG~--~qrv~ia~al~~~-p~llllDEPt~~LD~~~--------~~~~~~~l   85 (146)
                      ..++....+.+++.. .+. +..+.++|+++  +|+++.+++++.+ |+++++|||++.+|+..        ...+.+.|
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L  138 (220)
T 2cvh_A           59 PERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL  138 (220)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence            345555566666531 111 22345667765  5678888899986 99999999999999743        24566668


Q ss_pred             HHHHHhcCCeEEEEecCHH-------------HHHhhcCeEEEEECC
Q 046954           86 VKLKKKHGMTIVMVSHSIK-------------QIQRIADVVCLLVNG  119 (146)
Q Consensus        86 ~~l~~~~g~tvi~itH~~~-------------~~~~~~d~v~~l~~G  119 (146)
                      ++++++.|++||+++|...             .+..+||++++|+..
T Consensus       139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            8887777999999999865             678899999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.18  E-value=1.6e-13  Score=107.73  Aligned_cols=81  Identities=21%  Similarity=0.320  Sum_probs=71.4

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCC-----eEEEEecCHHHHHhhcC
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~-~~g~-----tvi~itH~~~~~~~~~d  111 (146)
                      ..+..||+|| |+|++|   +.+|++      |+|+|+.....+.+++.++.+ +.|.     ||+++|||++  ..+||
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d  234 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD  234 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence            4578899999 899999   678876      999999999999999999864 3577     9999999998  67899


Q ss_pred             eEEEEECCEEEEeeCcccc
Q 046954          112 VVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       112 ~v~~l~~G~i~~~g~~~~~  130 (146)
                      +++++.+|+|+.+++.+++
T Consensus       235 ~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          235 EVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHHHHCSEEEEBCHHHHTT
T ss_pred             heEEeeCcEEEEeCCHHHc
Confidence            9999999999999887664

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.18  E-value=9.6e-12  Score=102.09  Aligned_cols=69  Identities=20%  Similarity=0.297  Sum_probs=58.8

Q ss_pred             HHHHHHHHHh-cCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH---------HhhcCeE
Q 046954           49 QRVALARTLA-NEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRIADVV  113 (146)
Q Consensus        49 qrv~ia~al~-~~p~llllDEPt~-----~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~---------~~~~d~v  113 (146)
                      +...+..+|. .+|+++++||||+     ++|+..++.+.++++.+++ .|+|||++||+++++         ..+||+|
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~v  204 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNV  204 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEE
Confidence            4455566664 6899999999998     4699999999999999976 599999999999984         5569999


Q ss_pred             EEEEC
Q 046954          114 CLLVN  118 (146)
Q Consensus       114 ~~l~~  118 (146)
                      ++|++
T Consensus       205 i~L~~  209 (525)
T 1tf7_A          205 VILRN  209 (525)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99998

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.18  E-value=2e-11  Score=88.94  Aligned_cols=102  Identities=14%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHcCCChh-hhcC--CcCCCChhHH-HHHHHHHHHhc-------CCCEEEeeCCCCCCCHHH----------
Q 046954           19 ENEVYKLLSLADLDSS-FLSK--TGAEISVGQA-QRVALARTLAN-------EPEVLLLDEPTSALDPIS----------   77 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~~~--~~~~LSgG~~-qrv~ia~al~~-------~p~llllDEPt~~LD~~~----------   77 (146)
                      ..++..+.+.+++... ..+.  .....+++++ +.+..+++++.       +|+++++|||++++|+..          
T Consensus        73 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~  152 (231)
T 4a74_A           73 PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ  152 (231)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence            4456667777777521 1111  1234455544 34666666665       999999999999999842          


Q ss_pred             --HHHHHHHHHHHHHhcCCeEEEEec----CHHHHHhhcCeEEEEECCE
Q 046954           78 --TQNIEDVLVKLKKKHGMTIVMVSH----SIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        78 --~~~~~~~l~~l~~~~g~tvi~itH----~~~~~~~~~d~v~~l~~G~  120 (146)
                        ...+++.|.+++++.|+|||++||    +...+..+||++++|++|+
T Consensus       153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence              237888888887777999999999    4445999999999999763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.17  E-value=6.2e-13  Score=100.98  Aligned_cols=62  Identities=15%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           34 SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        34 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      .+.+..+.+|||||+||+++|||++.   ++++|||+.|||+..    .++++.+.+ . .++|++.|..+
T Consensus        90 ~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D  151 (270)
T 3sop_A           90 QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGG
T ss_pred             HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEeccc
Confidence            35566778999999999999999886   999999999999987    456666654 3 88999988765

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.17  E-value=1.2e-11  Score=106.03  Aligned_cols=86  Identities=13%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      .+.+|+++++ ++.+...+.+|+++|||||++|+|+.....+ ..++..+.++.|.++|++||+.+.+ .+||++..+.+
T Consensus       667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n  744 (800)
T 1wb9_A          667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVAN  744 (800)
T ss_dssp             ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEE
T ss_pred             hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEE
Confidence            3457777765 4444556899999999999999999887776 7788888753589999999999765 58999888888


Q ss_pred             CEEEEeeCc
Q 046954          119 GEIVEVLKP  127 (146)
Q Consensus       119 G~i~~~g~~  127 (146)
                      |++......
T Consensus       745 ~~~~~~~~~  753 (800)
T 1wb9_A          745 VHLDALEHG  753 (800)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEcC
Confidence            887655433

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.15  E-value=3.2e-11  Score=102.99  Aligned_cols=77  Identities=22%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             CCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           41 AEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al--~~~p~llllDEP---t~~LD~~~~-~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      ..+|+|+++++.+++++  +.+|+++|||||   |++||+.+. ..+.+.|.+    .|.++|++||+.+.+ .++  .-
T Consensus       634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~-~~~--~~  706 (765)
T 1ewq_A          634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT-ALG--LP  706 (765)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH-TCC--CT
T ss_pred             hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-Hhh--hh
Confidence            46899999999999999  999999999999   999999876 467777654    389999999998765 455  22


Q ss_pred             EEECCEEEEe
Q 046954          115 LLVNGEIVEV  124 (146)
Q Consensus       115 ~l~~G~i~~~  124 (146)
                      .+.++++...
T Consensus       707 ~v~n~~~~~~  716 (765)
T 1ewq_A          707 RLKNLHVAAR  716 (765)
T ss_dssp             TEEEEEEEEE
T ss_pred             cceEEEEEEE
Confidence            3344554433

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.14  E-value=1.6e-13  Score=100.88  Aligned_cols=92  Identities=9%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHH-----HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh---
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL-----ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK---   91 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~i-----a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~---   91 (146)
                      ..+.++++...+.  ..+   .+|||||+||++|     +++++.+|++++||||++++|..+...+.+.+.+..++   
T Consensus       105 ~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~  179 (218)
T 1z6g_A          105 SEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHE  179 (218)
T ss_dssp             HHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            3455666654431  222   4789999999999     89999999999999999999999999999988877543   


Q ss_pred             ---cCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           92 ---HGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        92 ---~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                         .+...|+++|+++++...+++++.-
T Consensus       180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~  207 (218)
T 1z6g_A          180 ANLLNFNLSIINDDLTLTYQQLKNYLLN  207 (218)
T ss_dssp             HTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred             hcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence               4678899999999998888877643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.09  E-value=5.6e-11  Score=93.14  Aligned_cols=108  Identities=14%  Similarity=0.076  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCCChh-hhcC--CcC-CCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHH----------
Q 046954           19 ENEVYKLLSLADLDSS-FLSK--TGA-EISVGQAQRVALARTLA-------NEPEVLLLDEPTSALDPIS----------   77 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~~~--~~~-~LSgG~~qrv~ia~al~-------~~p~llllDEPt~~LD~~~----------   77 (146)
                      .+++....+.+++... ..+.  ... .-|.+++|++.++++++       .+|+++|+||||+++|+..          
T Consensus       179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~  258 (349)
T 1pzn_A          179 PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ  258 (349)
T ss_dssp             HHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH
Confidence            3455556666666421 1111  111 12688999999999999       6899999999999999863          


Q ss_pred             --HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954           78 --TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus        78 --~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                        ...++..|.+++++.|+|||+++|....+...++.......|++++.+.
T Consensus       259 ~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          259 QKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence              4667777788877779999999999876654444455566676655443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.08  E-value=1.8e-13  Score=105.95  Aligned_cols=108  Identities=9%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.+|+.+... ++.  ....+.+.+.++.++ . ...+.++.+|||||+||+++|++++.+|++||+|||++.+|+.. 
T Consensus       136 t~~e~~~~~~~-~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-  211 (312)
T 3aez_A          136 AELQRRNLMHR-KGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-  211 (312)
T ss_dssp             HHHHHTTCTTC-TTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-
T ss_pred             cHHHHHHHHHh-cCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-
Confidence            45677765321 222  123456777888776 3 34456678999999999999999999999999999999998622 


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHH-HhhcCeEEEEECCE
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVCLLVNGE  120 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~-~~~~d~v~~l~~G~  120 (146)
                             ..+.+..+ ..|+++|+.+.. ..+.+|.+.+++|.
T Consensus       212 -------~~l~~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          212 -------LMVSDLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             -------CCGGGGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             -------HHHHHhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence                   11222233 457788887653 45567777777764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.04  E-value=2.6e-12  Score=103.64  Aligned_cols=79  Identities=20%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH---hcCC-----eEEEEecCHHHHHhhcC
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK---KHGM-----TIVMVSHSIKQIQRIAD  111 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~---~~g~-----tvi~itH~~~~~~~~~d  111 (146)
                      +..||+|| |||+||   +.+|++      |+|||+.....+.+++.++.+   +.|.     ||+++|||++  ..+||
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad  323 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIAD  323 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhc
Confidence            56899999 999999   888887      999999999999999999865   2364     9999999998  67899


Q ss_pred             eEEEEECCEEEEeeCcccc
Q 046954          112 VVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus       112 ~v~~l~~G~i~~~g~~~~~  130 (146)
                      ++++|.+|+++..+++.++
T Consensus       324 ~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          324 SARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             HHHHHSSEEEEECHHHHHT
T ss_pred             eEEEEeCcEEEEeCCHHHc
Confidence            9999999999998887665

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.93  E-value=1e-12  Score=95.20  Aligned_cols=85  Identities=9%  Similarity=-0.079  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhH----HHHHHHHHHHhcCCCEEEeeCCCCC-------CCHHHHHHHHHHHHH
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQ----AQRVALARTLANEPEVLLLDEPTSA-------LDPISTQNIEDVLVK   87 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~----~qrv~ia~al~~~p~llllDEPt~~-------LD~~~~~~~~~~l~~   87 (146)
                      .+++.+.++.+++. +..+.++.++|+|+    +||+++|++++.+|.++++||||++       ||+.....+.+.+.+
T Consensus        67 ~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r  145 (211)
T 3asz_A           67 LALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR  145 (211)
T ss_dssp             HHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence            45667777877775 34566788999997    4788999999999999999999999       999999999999988


Q ss_pred             HHHhcCCeEEEEecCHH
Q 046954           88 LKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        88 l~~~~g~tvi~itH~~~  104 (146)
                      ..++.|.|++.++|++.
T Consensus       146 ~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          146 DVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             HHHHSCCCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHH
Confidence            65456999999999853

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.92  E-value=4.7e-10  Score=84.68  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954           49 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV  117 (146)
Q Consensus        49 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~  117 (146)
                      -+++||+||.++|+++++||||   |+.+...++   +. +. .|.+|++++|+.+ +...+||++.|.
T Consensus        87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A           87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            4899999999999999999999   988865443   33 33 4999999999987 567788876654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.86  E-value=2.6e-11  Score=87.55  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             cCCcCCCChhHHHHH-HHHH---HHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE----EecCHHHH
Q 046954           37 SKTGAEISVGQAQRV-ALAR---TLANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKHGMTIVM----VSHSIKQI  106 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv-~ia~---al~~~p~llllDE--Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~----itH~~~~~  106 (146)
                      .++...+|+|||+++ ++++   |++.+|+++|+||  |+..+|+...+.+.+++.    . ..++|+    ++|+.+  
T Consensus        78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--  150 (189)
T 2i3b_A           78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--  150 (189)
T ss_dssp             SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--
T ss_pred             ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--
Confidence            344557999999888 4444   6899999999999  899999976555555543    3 344553    349864  


Q ss_pred             HhhcCeEEEEECCEEEEe
Q 046954          107 QRIADVVCLLVNGEIVEV  124 (146)
Q Consensus       107 ~~~~d~v~~l~~G~i~~~  124 (146)
                      ..+.|+|..+.+|+|+..
T Consensus       151 ~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          151 LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             CTTHHHHHTTCCSEEEEC
T ss_pred             hHHHHHHeecCCcEEEEe
Confidence            345677777788998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.79  E-value=1.4e-09  Score=85.44  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      +||+||.++|++|++|||+   |+....    .+.+.+. .|++|++++|+.+.+ ..+||++.|..
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~  245 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP  245 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence            9999999999999999999   655543    3344444 499999999999877 67999988744

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.78  E-value=4.8e-09  Score=75.19  Aligned_cols=74  Identities=9%  Similarity=0.048  Sum_probs=59.2

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHH-HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQR-VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT   95 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr-v~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t   95 (146)
                      ++..++...+++.-....++..+|+||+|+ +..+++++.+|+++++|||||++|+.+...+++.|.++..+ |.+
T Consensus       128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~  202 (210)
T 1pui_A          128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP  202 (210)
T ss_dssp             HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence            455667777775323356788899999999 89999999999999999999999999999999999998653 543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.75  E-value=2.6e-08  Score=72.89  Aligned_cols=101  Identities=14%  Similarity=0.249  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHcCCCh-hhhcC--CcCCCChhHHHH-HHHHHHHh--cCCCEEEeeCCCCCCCHH-------H-----HHH
Q 046954           19 ENEVYKLLSLADLDS-SFLSK--TGAEISVGQAQR-VALARTLA--NEPEVLLLDEPTSALDPI-------S-----TQN   80 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~-~~~~~--~~~~LSgG~~qr-v~ia~al~--~~p~llllDEPt~~LD~~-------~-----~~~   80 (146)
                      ..+....++.+++.. ...+.  .....+..+... +.-+..++  .+|+++++|||++.+|+.       .     ...
T Consensus        72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~  151 (243)
T 1n0w_A           72 PERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR  151 (243)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHH
Confidence            344555666677642 11111  123456655432 23233333  589999999999999985       3     345


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHh-------------------hcCeEEEEECC
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQR-------------------IADVVCLLVNG  119 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~-------------------~~d~v~~l~~G  119 (146)
                      +...|.+++++.|+|||+++|.......                   +||.+++|+.|
T Consensus       152 ~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          152 FLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             HHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            6666777777779999999997765543                   79999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.66  E-value=3.7e-10  Score=86.74  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~-LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      .+.++.++|||||||+.+|||++    ++++||||++ ||+...    +.++++.++.+.++|+++||+.
T Consensus       107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            34677899999999999999886    9999999984 999873    5666665445789999999973

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.59  E-value=2.9e-09  Score=79.08  Aligned_cols=83  Identities=11%  Similarity=0.066  Sum_probs=56.6

Q ss_pred             HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954           20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV   99 (146)
Q Consensus        20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i   99 (146)
                      +.+.+.++.+.   +..+.++..||+||+||+++ ++++.+|+++|+|||....+..        +.++   .+.+|+++
T Consensus        97 ~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~  161 (245)
T 2jeo_A           97 DLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVD  161 (245)
T ss_dssp             HHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEE
T ss_pred             HHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEE
Confidence            33455555431   23456778999999999988 6888999999999999888764        2222   37899999


Q ss_pred             ecCH-HHHHhhcCeEEEEECCE
Q 046954          100 SHSI-KQIQRIADVVCLLVNGE  120 (146)
Q Consensus       100 tH~~-~~~~~~~d~v~~l~~G~  120 (146)
                      ||+. .....+++++   ++|+
T Consensus       162 th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          162 TDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             CCHHHHHHHHHHHHT---C---
T ss_pred             CCHHHHHHHHHHHHH---HcCC
Confidence            9974 4444555545   6674

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.51  E-value=4.1e-07  Score=72.47  Aligned_cols=102  Identities=12%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHcCCChh-hh-cCCcCCCChhHHHH--HHHHHHH--hcCCCEEEeeCCCCCCCHHHH------------HH
Q 046954           19 ENEVYKLLSLADLDSS-FL-SKTGAEISVGQAQR--VALARTL--ANEPEVLLLDEPTSALDPIST------------QN   80 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~-~~~~~~LSgG~~qr--v~ia~al--~~~p~llllDEPt~~LD~~~~------------~~   80 (146)
                      ..++....+.+++... .. +-.......++.+.  +.-+..+  ..+|+++++|||++.+|+...            ..
T Consensus       226 ~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~  305 (400)
T 3lda_A          226 PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK  305 (400)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence            4556667778887521 11 11222233344333  3333333  257999999999999997543            67


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCH-------------------HHHHhhcCeEEEEECCE
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSI-------------------KQIQRIADVVCLLVNGE  120 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~-------------------~~~~~~~d~v~~l~~G~  120 (146)
                      ++..|++++++.|+|||+|+|..                   ..+..++|.+++|++|+
T Consensus       306 il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          306 FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            88889999888899999999982                   23577899999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.44  E-value=1.7e-10  Score=82.15  Aligned_cols=80  Identities=11%  Similarity=0.032  Sum_probs=61.5

Q ss_pred             ChhHHHHHHHHH------HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEE
Q 046954           44 SVGQAQRVALAR------TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLL  116 (146)
Q Consensus        44 SgG~~qrv~ia~------al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l  116 (146)
                      |+|++|++.++.      +++.+|+...+|+   ++|+..... ++.+..+. +.+.++|.+||. ++.+.++||+|+  
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--  168 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK--  168 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence            888888888888      8899998888884   899988888 88888774 347899999999 999999999999  


Q ss_pred             ECCEEEEeeCcccc
Q 046954          117 VNGEIVEVLKPDLL  130 (146)
Q Consensus       117 ~~G~i~~~g~~~~~  130 (146)
                      ++|+++..|+++-+
T Consensus       169 ~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          169 TNPRFIFCMAGDPL  182 (189)
T ss_dssp             HCGGGSCC------
T ss_pred             hCCcEEEeecCCch
Confidence            99999999988654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.44  E-value=1.7e-07  Score=66.03  Aligned_cols=48  Identities=15%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             HHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           56 TLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        56 al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      ..+.+|++|++|||++ ++|+..+..+.+++.+..+ .|+++|++||...
T Consensus        96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~  144 (180)
T 3ec2_A           96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL  144 (180)
T ss_dssp             HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred             HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence            3456999999999995 9999999999999988764 5899999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.42  E-value=6.6e-09  Score=81.49  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=68.1

Q ss_pred             cCCCChhHHHHHHHHHHHh-cCCCEEEeeC---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           40 GAEISVGQAQRVALARTLA-NEPEVLLLDE---PT------SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~-~~p~llllDE---Pt------~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      +..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.+.|.++.++.|.++++++|. ....++
T Consensus       256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~  334 (365)
T 1lw7_A          256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY  334 (365)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH
Confidence            4456778888888888774 6999999999   65      58999999999999999876568999999976 577788


Q ss_pred             cCeEEEEECCEEEEeeCcccccc
Q 046954          110 ADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus       110 ~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                      ++++.++++  ++..++++++.+
T Consensus       335 ~~~i~~i~~--~l~~~~~~~~~~  355 (365)
T 1lw7_A          335 NQVKAVIEK--VLNEEEISELQN  355 (365)
T ss_dssp             HHHHHHHHH--HTSCCCCSSCCC
T ss_pred             HHHHHHHHH--HhcccchhHhhc
Confidence            888887755  555667777644

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.28  E-value=3.2e-06  Score=68.05  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             cCCCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEec--------
Q 046954           40 GAEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP--------ISTQNIEDVLVKLKKKHGMTIVMVSH--------  101 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~--~~p~llllDEPt~~LD~--------~~~~~~~~~l~~l~~~~g~tvi~itH--------  101 (146)
                      ...+|.++.+  +.++.++  .+|+++++|+++...+.        .....+...|+.++++.|++||+++|        
T Consensus       293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~  370 (454)
T 2r6a_A          293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR  370 (454)
T ss_dssp             CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred             CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence            4578999876  5566665  78999999999987743        34467778888888888999999999        


Q ss_pred             -C--HH--------HHHhhcCeEEEEECCEE
Q 046954          102 -S--IK--------QIQRIADVVCLLVNGEI  121 (146)
Q Consensus       102 -~--~~--------~~~~~~d~v~~l~~G~i  121 (146)
                       +  +.        .+...||.|++|..++.
T Consensus       371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence             2  32        47788999999987654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.24  E-value=7.1e-06  Score=59.78  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             cCCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------HHhhcCeEEEEEC
Q 046954           59 NEPEVLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVN  118 (146)
Q Consensus        59 ~~p~llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--------~~~~~d~v~~l~~  118 (146)
                      .+|+++++|+|++.+  |+.....++..+.+++++.|+|||+++|....        +..+||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            689999999999988  66566677777777766779999999998776        5688999999974

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.23  E-value=3.7e-07  Score=70.22  Aligned_cols=56  Identities=25%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI  103 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~  103 (146)
                      ++...+||++||||++.+|+.++|     .||+.+...+.+.++++.+..|.|+|++||+.
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            455669999999999999995544     55655556677777777665699999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.17  E-value=1.6e-06  Score=72.42  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             HHhcCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHH--------HHhh----cCeEEEE
Q 046954           56 TLANEPEVLLLDEP------TSALDPISTQNIEDVLVKLKK-KHGMTIVMVSHSIKQ--------IQRI----ADVVCLL  116 (146)
Q Consensus        56 al~~~p~llllDEP------t~~LD~~~~~~~~~~l~~l~~-~~g~tvi~itH~~~~--------~~~~----~d~v~~l  116 (146)
                      +....|+++|+|||      |+|||+..+..+.+++.++.+ ..+.++++++|+++.        +..+    ...|+++
T Consensus       142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred             cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence            33457999999999      999999999999999999643 347889999999762        2222    2457888


Q ss_pred             ECCEEEEeeCcc
Q 046954          117 VNGEIVEVLKPD  128 (146)
Q Consensus       117 ~~G~i~~~g~~~  128 (146)
                      .++.++..|+.+
T Consensus       222 TK~Dlv~~g~~~  233 (608)
T 3szr_A          222 TKPDLVDKGTED  233 (608)
T ss_dssp             ECGGGSSSSSTT
T ss_pred             cchhhcCcccHH
Confidence            888877766654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.06  E-value=1.2e-06  Score=69.12  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954           50 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL  116 (146)
Q Consensus        50 rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l  116 (146)
                      +.+|+++|..+|+++++|||+   |+....   ..++..  ..|.+++.++|+.+ +...+||++.|
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~--~~g~~vi~t~H~~~-~~~~~~rl~~l  256 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA--ETGHLVFGTLHTNT-AIDTIHRIVDI  256 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH--TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH--hcCCEEEEEECcch-HHHHHHHHHHh
Confidence            579999999999999999999   776543   334433  34899999999965 66777776433

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.05  E-value=7.7e-06  Score=56.35  Aligned_cols=45  Identities=18%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEEecC
Q 046954           56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT-IVMVSHS  102 (146)
Q Consensus        56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t-vi~itH~  102 (146)
                      +++.+|++|++|||++ ++...+..+++++.++.+ .|++ +|++||.
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~  124 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence            4577999999999998 666668999999998865 4788 8888884

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.03  E-value=3e-06  Score=65.27  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH-HhhcCeEE
Q 046954           57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVC  114 (146)
Q Consensus        57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~-~~~~d~v~  114 (146)
                      +..+|+++|+|||++ ||+.+...+.+.+.+..  .+.++|++||++..+ ..+.+|+.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~  186 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQCL  186 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTSE
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhce
Confidence            466899999999999 99999999999998864  378999999997532 23344543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.02  E-value=2.5e-05  Score=61.07  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcC--CCEEEeeCCCCCC----------CH---HHHHHHHHHHHHH---HHhcCCeEEEEecCHH-----
Q 046954           48 AQRVALARTLANE--PEVLLLDEPTSAL----------DP---ISTQNIEDVLVKL---KKKHGMTIVMVSHSIK-----  104 (146)
Q Consensus        48 ~qrv~ia~al~~~--p~llllDEPt~~L----------D~---~~~~~~~~~l~~l---~~~~g~tvi~itH~~~-----  104 (146)
                      .+-+.++++++.+  |+++++|||++.+          |+   ...+.+.+.+.++   +++.|++||+++|...     
T Consensus       125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~  204 (349)
T 2zr9_A          125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVM  204 (349)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence            3456778888755  9999999999998          32   1223444555544   3567999999999643     


Q ss_pred             -----------HHHhhcCeEEEEECCEEEEeeC
Q 046954          105 -----------QIQRIADVVCLLVNGEIVEVLK  126 (146)
Q Consensus       105 -----------~~~~~~d~v~~l~~G~i~~~g~  126 (146)
                                 .+..+||.++.++.+++...|+
T Consensus       205 ~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          205 FGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             -----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             cCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                       2567899999998876654443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.92  E-value=4.9e-07  Score=66.85  Aligned_cols=50  Identities=24%  Similarity=0.182  Sum_probs=43.5

Q ss_pred             hhcCCcCCCChhHHHHHHHHHHH-hcCCCEEEee----CCCCCCCHHHHHHHHHHHHHHHHh
Q 046954           35 FLSKTGAEISVGQAQRVALARTL-ANEPEVLLLD----EPTSALDPISTQNIEDVLVKLKKK   91 (146)
Q Consensus        35 ~~~~~~~~LSgG~~qrv~ia~al-~~~p~llllD----EPt~~LD~~~~~~~~~~l~~l~~~   91 (146)
                      ..++++.+|||    |+   +|+ +.+|+++++|    |||++||+.+...+.+.+.++.++
T Consensus       145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            44677889999    55   777 9999999999    999999999999999999988653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.86  E-value=1.3e-06  Score=70.03  Aligned_cols=57  Identities=12%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CCChhHHHHHHHHHHHhcCCC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           42 EISVGQAQRVALARTLANEPE---VLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~---llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      .++.+++||++|||+++.+|+   ++++|||| .+||+...    .+++.+. . +..+|+|.|..+
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~D  178 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKAD  178 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEccc
Confidence            356677889999999999999   99999999 69998874    4455554 3 788888888765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.84  E-value=6.9e-07  Score=68.86  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~  109 (146)
                      ++|+||+||+..+++++.+|+++  |||         ..+.+.+++++  .+.+|+++||+...+..+
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l  195 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL  195 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence            79999999999889999999987  998         77888888874  389999999965444333

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.75  E-value=6.2e-06  Score=65.98  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      +.++.+||+|++|++.+|++|+..|.++++    +.+|+... ...+.+.+..++.|.+++++|.
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence            345678999999999999999999999999    99999877 4455555544445778777663

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.66  E-value=5.8e-07  Score=68.66  Aligned_cols=41  Identities=15%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954           37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ..+...+||||+||+.+|++.+.+|+++|+|||++++|+..
T Consensus       129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             ccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence            34557899999999999733333999999999999999853

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.60  E-value=2.4e-05  Score=66.96  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=58.3

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHhhcCeE
Q 046954           40 GAEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMV-SHSIKQIQRIADVV  113 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~i-tH~~~~~~~~~d~v  113 (146)
                      +.-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+..... ...+|+++ ||+.+.+.++++..
T Consensus       188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred             EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence            44578999999999999999999999999996 9998877666666655432 24677774 99998888888753

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.55  E-value=2.1e-06  Score=70.44  Aligned_cols=90  Identities=19%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             HHHHHcCCChhhhc---CCcCCCChhHHHHH----------HHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHHHHH-
Q 046954           24 KLLSLADLDSSFLS---KTGAEISVGQAQRV----------ALARTLANEPE-VLLLDEPTSALDPISTQNIEDVLVKL-   88 (146)
Q Consensus        24 ~~l~~~~l~~~~~~---~~~~~LSgG~~qrv----------~ia~al~~~p~-llllDEPt~~LD~~~~~~~~~~l~~l-   88 (146)
                      +++...|+. ++..   +....+|+||+|+.          ++++++...|. ++++||+++.++.. ...+.+.|.++ 
T Consensus       248 ~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~La  325 (512)
T 2ius_A          248 KLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLA  325 (512)
T ss_dssp             HHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHH
Confidence            455666653 2221   22235788887752          35666778898 89999999988733 34455555554 


Q ss_pred             --HHhcCCeEEEEecCHH-------HHHhhcCeEEE
Q 046954           89 --KKKHGMTIVMVSHSIK-------QIQRIADVVCL  115 (146)
Q Consensus        89 --~~~~g~tvi~itH~~~-------~~~~~~d~v~~  115 (146)
                        .+..|.++|++||++.       ....+.+||.+
T Consensus       326 r~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          326 QKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence              3445889999999987       44566677655

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.50  E-value=0.00014  Score=59.15  Aligned_cols=73  Identities=19%  Similarity=0.330  Sum_probs=57.0

Q ss_pred             CCcCCCChhHHHHHHHHH--HHhc---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           38 KTGAEISVGQAQRVALAR--TLAN---------------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~--al~~---------------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      +..+.+||||+|-.-+|.  ++++               .-.++++||. +-+|....+..+++++++    |.-+|++|
T Consensus       375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiat  449 (483)
T 3euj_A          375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAA  449 (483)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred             cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEEC
Confidence            346789999999654444  3322               1258999999 999999999999998764    89999999


Q ss_pred             cCHHHHHhhcCeEEEEE
Q 046954          101 HSIKQIQRIADVVCLLV  117 (146)
Q Consensus       101 H~~~~~~~~~d~v~~l~  117 (146)
                      -+  .+..+.|.++.+-
T Consensus       450 P~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          450 PE--NISPERGTTYKLV  464 (483)
T ss_dssp             SS--SCCCSSSEEEECC
T ss_pred             cc--hhhhccCceEEEE
Confidence            88  6777788887764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.32  E-value=2.6e-07  Score=73.49  Aligned_cols=65  Identities=15%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             CC--CEEEeeCCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEecCHHHHHhhcCeEE-EEECC-EEEEeeCc
Q 046954           60 EP--EVLLLDEPTSALDPISTQNIEDVLVKL-KKKHGMTIVMVSHSIKQIQRIADVVC-LLVNG-EIVEVLKP  127 (146)
Q Consensus        60 ~p--~llllDEPt~~LD~~~~~~~~~~l~~l-~~~~g~tvi~itH~~~~~~~~~d~v~-~l~~G-~i~~~g~~  127 (146)
                      +|  ++.++|||+.++|+...+..++.+.+. .+ .|.|++  +|.+..+..+|+++. +|++| +++..++.
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            89  999999999999999999999999887 54 477764  999999999999999 99999 88765543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.23  E-value=0.00048  Score=50.23  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954           54 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL  130 (146)
Q Consensus        54 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  130 (146)
                      +..++..++++|||     ||+.+...+.+.+.     .+.+|+++||+++++.+   |+  +.+|    .++++++
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i  158 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI  158 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence            45566678999999     99999999999875     38999999999998876   33  6667    3455544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.08  E-value=6.3e-06  Score=58.23  Aligned_cols=50  Identities=12%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEE-------EeeCCCC---CCCHHHHHHHHHHHHHHHHh
Q 046954           42 EISVGQAQRVALARTLANEPEVL-------LLDEPTS---ALDPISTQNIEDVLVKLKKK   91 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~ll-------llDEPt~---~LD~~~~~~~~~~l~~l~~~   91 (146)
                      .|||||+||++||||++.+|++.       .-|.|..   -+|......+.+.+.+..++
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~  162 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE  162 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence            49999999999999999999873       2345432   24455667788887766554

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.00  E-value=0.0011  Score=51.69  Aligned_cols=56  Identities=18%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEec
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSH  101 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~-g~tvi~itH  101 (146)
                      +.||.++++|+..|...+.+++++|.|+|...     ...+...++++.++. |..+|+|-|
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence            57999999999999999999999999998754     336677777777666 788888864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.98  E-value=0.0018  Score=52.64  Aligned_cols=62  Identities=18%  Similarity=0.302  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEeeCCC----------CCCCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHHH
Q 046954           45 VGQAQRVALARTLANEPEVLLLDEPT----------SALDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        45 gG~~qrv~ia~al~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~~  106 (146)
                      +++++|..+++|....|.+|++||+.          +|.|......+.+++..+-   ...+..||.+||.++.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            67788999999999999999999993          4677776666667766653   23478999999998643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.97  E-value=0.00045  Score=52.65  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH--HhcCCeEEE-EecCHHHHHhhcCeEEEEECCEEEE
Q 046954           47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVM-VSHSIKQIQRIADVVCLLVNGEIVE  123 (146)
Q Consensus        47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~--~~~g~tvi~-itH~~~~~~~~~d~v~~l~~G~i~~  123 (146)
                      ..-+.++++  +.+|+++|+|  |+|+|+.....+.++.+-+.  ...+..+++ .+|..+.+.++++++..+..|.++.
T Consensus       171 ~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          171 EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            334555554  4999999999  99999877765555443322  112333444 4999999999999887777777765


Q ss_pred             e
Q 046954          124 V  124 (146)
Q Consensus       124 ~  124 (146)
                      .
T Consensus       247 t  247 (296)
T 2px0_A          247 T  247 (296)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.89  E-value=9.9e-05  Score=51.78  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954           37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK   89 (146)
Q Consensus        37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~   89 (146)
                      +.++..+|+|++|+++++|++.++|+++        +|+...+.+.+.+..+.
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence            3456689999999999999999999876        68888888888777664

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.60  E-value=0.002  Score=49.34  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHH---HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRV---ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK   89 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv---~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~   89 (146)
                      ...+.+..+++  .    ...+|+|+.+++   ++++++..+|+++|+|+|..   ......+++.+.++.
T Consensus       151 L~~~~~~~gl~--~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~  212 (306)
T 1vma_A          151 LKIWGERVGAT--V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH  212 (306)
T ss_dssp             HHHHHHHHTCE--E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCc--E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence            34556666663  1    236789999999   89999999999999999974   344555555555543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0037  Score=48.46  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=50.0

Q ss_pred             CCcCCCChhHHHHHHHHHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe--cCHH
Q 046954           38 KTGAEISVGQAQRVALARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS--HSIK  104 (146)
Q Consensus        38 ~~~~~LSgG~~qrv~ia~al~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it--H~~~  104 (146)
                      .++..+|+|++|.+. +.+...++-++++| +|.+++|......+...+.....  +..+|++.  ||+.
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~  293 (357)
T 2e87_A          227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA  293 (357)
T ss_dssp             SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred             cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence            445678999998776 55555677789999 99999999998888887776542  78888888  8864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.45  E-value=0.0089  Score=45.33  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCC-CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954           44 SVGQAQRVALARTLANEPEVLLLDEP-TSALDPISTQNIEDVLVKLKKKHGMTIVMVS  100 (146)
Q Consensus        44 SgG~~qrv~ia~al~~~p~llllDEP-t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it  100 (146)
                      +..+.+|.+++.+...+++++|+||| +.++|......+......+.  ...+++++.
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~  219 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD  219 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence            34456788999998899999999999 99999988888877766653  234444443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.45  E-value=0.0017  Score=50.48  Aligned_cols=41  Identities=15%  Similarity=0.187  Sum_probs=27.9

Q ss_pred             CCChhHHHHHHHHHHH---hc--CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 046954           42 EISVGQAQRVALARTL---AN--EPEVLLLDEPTSALDPISTQNIEDVLVKL   88 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al---~~--~p~llllDEPt~~LD~~~~~~~~~~l~~l   88 (146)
                      .+|+|++||.+++++|   ..  ++.++++|||+      ....+.+.+..+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~------~~~r~~~~i~~i  341 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS------YLDRYNQVKAVI  341 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS------HHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC------HHHHHHHHHHHH
Confidence            5899999999999999   66  89999999996      344444444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.87  E-value=0.023  Score=43.79  Aligned_cols=68  Identities=9%  Similarity=0.044  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH---------HHHHhhcCeEEEEEC
Q 046954           48 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVN  118 (146)
Q Consensus        48 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~---------~~~~~~~d~v~~l~~  118 (146)
                      .+.-.+++++..++.++++|.++.       ..+.+.++.+.+..+.|+|++||.-         +.+....-.|.++..
T Consensus       231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~  303 (328)
T 3e70_C          231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGV  303 (328)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEEC
T ss_pred             HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeC
Confidence            444558899988888888885554       4566667777666799999999953         234455667888888


Q ss_pred             CEEE
Q 046954          119 GEIV  122 (146)
Q Consensus       119 G~i~  122 (146)
                      |+-+
T Consensus       304 Ge~v  307 (328)
T 3e70_C          304 GQGY  307 (328)
T ss_dssp             SSST
T ss_pred             CCCc
Confidence            8654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.67  E-value=0.0022  Score=50.02  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           44 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        44 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      +++..++..|+.++..+|+.+++|||..       ....+.+..+.. ...|++.++|..+ +...++|+..+..|.
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS-CELTFERLALMVLQN  303 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence            3666788999999999999999999986       245566776643 2357899999965 777788888887663

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.58  E-value=0.019  Score=43.87  Aligned_cols=100  Identities=11%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHcCCChh-hhcC-C-cCCCChhH-HHHHHHHHHHh---cCCCEEEeeCCCCCCCH--------H----HHH
Q 046954           19 ENEVYKLLSLADLDSS-FLSK-T-GAEISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALDP--------I----STQ   79 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~~~-~-~~~LSgG~-~qrv~ia~al~---~~p~llllDEPt~~LD~--------~----~~~   79 (146)
                      .+++...++.++++.. +.++ . ....+..+ .+.+..++.++   .+|+++++|+.++-...        .    ...
T Consensus       155 ~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~  234 (324)
T 2z43_A          155 WERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLN  234 (324)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHH
Confidence            4566666777777421 1111 1 11233332 35667777777   67999999999876532        1    134


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCHHH----------------HHhhcCeEEEEEC
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVN  118 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~~~----------------~~~~~d~v~~l~~  118 (146)
                      ++...|++++++.|++||++.|-...                +...+|.++.|+.
T Consensus       235 ~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          235 KHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence            55666777777789999999886432                3446777788764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.35  E-value=0.032  Score=42.50  Aligned_cols=54  Identities=15%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe--EEEEec
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT--IVMVSH  101 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t--vi~itH  101 (146)
                      ||.++++|+..|...+.++++++.|+|...     ...+...++++.++.|..  +|+|.|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            999999999999999999999999998643     345666777776666777  888865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.35  E-value=0.0088  Score=47.92  Aligned_cols=57  Identities=9%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHHhcCCeEEEEecC
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHS  102 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~-l~~~~g~tvi~itH~  102 (146)
                      .|+-.+   +.|+++|..+++++++|+|+..|.+.....+.+.+.+ +. ..|.+|++++.+
T Consensus       161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~  218 (427)
T 2qag_B          161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD  218 (427)
T ss_dssp             --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred             CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence            455555   7899999999999999999999999999999999987 64 569999999975

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.33  E-value=0.15  Score=39.59  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             HHHHHHHHHh--cCCCEEEeeCCCCCCCHH-------------HHHHHHHH---HHHHHHhcCCeEEEEecCHH------
Q 046954           49 QRVALARTLA--NEPEVLLLDEPTSALDPI-------------STQNIEDV---LVKLKKKHGMTIVMVSHSIK------  104 (146)
Q Consensus        49 qrv~ia~al~--~~p~llllDEPt~~LD~~-------------~~~~~~~~---l~~l~~~~g~tvi~itH~~~------  104 (146)
                      +...+++.++  .+|+++++|.+++-....             ..+.+.+.   |..++++.|++||++.|-..      
T Consensus       128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f  207 (356)
T 1u94_A          128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF  207 (356)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred             HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            4456666664  689999999999876421             11233344   44445677999999998543      


Q ss_pred             ----------HHHhhcCeEEEEECCEEE
Q 046954          105 ----------QIQRIADVVCLLVNGEIV  122 (146)
Q Consensus       105 ----------~~~~~~d~v~~l~~G~i~  122 (146)
                                .+..++|-++.++..+..
T Consensus       208 g~~~~~~gG~~l~~~advrl~l~r~~~~  235 (356)
T 1u94_A          208 GNPETTTGGNALKFYASVRLDIRRIGAV  235 (356)
T ss_dssp             -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred             CCCcccCCCcceeeeccEEEEEEEeeee
Confidence                      245678888888776543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.22  E-value=4.3e-05  Score=62.48  Aligned_cols=69  Identities=13%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH--HhhcCeEEEEECCEEEEe-eCccc
Q 046954           55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI--QRIADVVCLLVNGEIVEV-LKPDL  129 (146)
Q Consensus        55 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~--~~~~d~v~~l~~G~i~~~-g~~~~  129 (146)
                      |||..| ++||+ ||++.+|| .+..+..   ++.+..++++.+++|+++.+  .++++++..+..+.++.. +++++
T Consensus        28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~   99 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEF   99 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHH
T ss_pred             cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHH
Confidence            899999 99999 99999999 4433332   34445578899999999998  888999988877777643 34443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.13  E-value=5.5e-06  Score=67.90  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE--EecCHHHHHhhcCe
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM--VSHSIKQIQRIADV  112 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~--itH~~~~~~~~~d~  112 (146)
                      ..+|+||+||.+++.          + | ++|||+...+.+++.+.++.+ .|.|+++  +||+++++...|+.
T Consensus       399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHTS
T ss_pred             EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcCC
Confidence            457999998876641          1 7 999999988888888777754 4889885  99999999988864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.12  E-value=0.34  Score=37.72  Aligned_cols=70  Identities=7%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             HHHHHHHHHh--cCCCEEEeeCCCCCCC-H---------------HHHHHHHHHHHHHHHhcCCeEEEEecC--------
Q 046954           49 QRVALARTLA--NEPEVLLLDEPTSALD-P---------------ISTQNIEDVLVKLKKKHGMTIVMVSHS--------  102 (146)
Q Consensus        49 qrv~ia~al~--~~p~llllDEPt~~LD-~---------------~~~~~~~~~l~~l~~~~g~tvi~itH~--------  102 (146)
                      +-+.+++.++  .+|+++++|.-++-.. .               ....+++..|..++++.|++||++.|-        
T Consensus       126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f  205 (356)
T 3hr8_A          126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF  205 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred             HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence            4456666665  5799999998665543 1               122344555667777789999999987        


Q ss_pred             --------HHHHHhhcCeEEEEEC
Q 046954          103 --------IKQIQRIADVVCLLVN  118 (146)
Q Consensus       103 --------~~~~~~~~d~v~~l~~  118 (146)
                              ...+..++|-++.++.
T Consensus       206 g~p~~~~GG~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          206 GSPETTTGGLALKFYATMRMEVRR  229 (356)
T ss_dssp             CSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred             CCcccCCCcchhhhhCcEEEEEEe
Confidence                    2336678899999985

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.02  E-value=0.015  Score=40.54  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954           49 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK   87 (146)
Q Consensus        49 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~   87 (146)
                      +.+.+|++++.+|+++++|  ||++|..+...+++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            4578899999999999999  999999999999998865

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.00  E-value=0.043  Score=43.81  Aligned_cols=68  Identities=16%  Similarity=0.287  Sum_probs=45.5

Q ss_pred             cCCCEEEeeCCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEE-EECCEEEEeeCc
Q 046954           59 NEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCL-LVNGEIVEVLKP  127 (146)
Q Consensus        59 ~~p~llllDEPt~~LD~-~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~-l~~G~i~~~g~~  127 (146)
                      .+|++|++||+..-.+. ..+..++..+..+.. .|+.+|++||+. ..+..+.+++.- +..|.++...++
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p  263 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP  263 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence            38999999999877664 678889999988864 589999999983 222222222222 345655554444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.85  E-value=0.0025  Score=48.95  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV  112 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~  112 (146)
                      ...++..||+|++||+.++                .+||+.+...+.++|++.++..+     ++|+.+.+..++++
T Consensus       156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence            4566789999999998554                78999999999999999876545     36887777777664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.53  E-value=0.048  Score=41.74  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=38.5

Q ss_pred             cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHhh
Q 046954           59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HGMTIVMVSHSIKQIQRI  109 (146)
Q Consensus        59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g~tvi~itH~~~~~~~~  109 (146)
                      .+|.++++||+... |+.....+...+.++...  .+.++|+++|+.+....+
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l  175 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  175 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence            45889999999876 888888888888766431  378999999998655443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=94.32  E-value=0.049  Score=39.09  Aligned_cols=71  Identities=18%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHh--cCCCEEEeeCCCC--CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEECCE
Q 046954           48 AQRVALARTLA--NEPEVLLLDEPTS--ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        48 ~qrv~ia~al~--~~p~llllDEPt~--~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~G~  120 (146)
                      +.....++..+  .+.+++||||.+.  .++......++++|.+.  -.+..||+++++ +..+.+.||-|--|+.-+
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk  181 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPVK  181 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence            33444455556  4579999999976  35555566788887753  247899999988 456788999998886543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.24  E-value=0.0023  Score=45.58  Aligned_cols=57  Identities=11%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             HHH-HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           53 LAR-TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        53 ia~-al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      .++ +++.+|++++||||++++|..+.+.+.+.|....++     +.+.|.  .  ..+|+|+++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~  173 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD  173 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence            455 678888899999999999999999999999887643     233452  1  56898877653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.01  E-value=1.8e-05  Score=59.40  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHHHH---------HHHHHHHHHHHHhcCCeEEEEecC
Q 046954           41 AEISVGQAQRVALARTLANEPEV--LLLDEPTSALDPIST---------QNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~l--lllDEPt~~LD~~~~---------~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      ..+|+|  ||+++++++..+|++  +|+||+|+.+|...+         ....+.+..+.  .|.|.+.+.|.
T Consensus       171 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~g~t~~~~a~r  239 (261)
T 2eyu_A          171 LPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK--QGLITLEDAME  239 (261)
T ss_dssp             ECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH--TTSSCHHHHHH
T ss_pred             EecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence            357888  899999999999999  999999999997632         23444555543  38776655443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.81  E-value=0.11  Score=38.48  Aligned_cols=61  Identities=13%  Similarity=0.149  Sum_probs=39.9

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHHHh---cCCeEEEEecCHH
Q 046954           44 SVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------STQNIEDVLVKLKKK---HGMTIVMVSHSIK  104 (146)
Q Consensus        44 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~----------~~~~~~~~l~~l~~~---~g~tvi~itH~~~  104 (146)
                      +++++.+..+..+...+|.+|++||+.+.++..          ....++..+..+...   .+..+|.+|++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            467788888899989999999999998776532          222344444332110   2456788888753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.71  E-value=0.03  Score=43.15  Aligned_cols=46  Identities=13%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             CCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 046954           41 AEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK   90 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~   90 (146)
                      ..+|+|++|++..+++++.      .|+++.    +|++|..+...+++.|.++..
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999987      688876    999999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=93.67  E-value=0.1  Score=40.18  Aligned_cols=101  Identities=8%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCCChh-hhcC-C-cCCCChhH-HHHHHHHHHHh----cCCCEEEeeCCCCCCCHH------------HH
Q 046954           19 ENEVYKLLSLADLDSS-FLSK-T-GAEISVGQ-AQRVALARTLA----NEPEVLLLDEPTSALDPI------------ST   78 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~~~-~-~~~LSgG~-~qrv~ia~al~----~~p~llllDEPt~~LD~~------------~~   78 (146)
                      .+++...++.+++... ..++ . ....++.+ .+.+..++.++    .+++++++|+.++-....            ..
T Consensus       170 ~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l  249 (343)
T 1v5w_A          170 PDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL  249 (343)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHH
Confidence            4556666677776421 1111 1 11233433 34455555665    679999999999866432            13


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHH-------------------HHhhcCeEEEEECC
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQ-------------------IQRIADVVCLLVNG  119 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~-------------------~~~~~d~v~~l~~G  119 (146)
                      ..+...|++++++.|++||+++|....                   +..++|-++.|+..
T Consensus       250 ~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~  309 (343)
T 1v5w_A          250 AQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKG  309 (343)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEES
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEc
Confidence            456666777777789999999996542                   33456778888743

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.48  E-value=0.013  Score=45.77  Aligned_cols=34  Identities=12%  Similarity=0.003  Sum_probs=28.7

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL   57 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al   57 (146)
                      +.++++.+++. .+.+.++.+|| ||+||++||+++
T Consensus       295 ~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          295 FVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             SGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence            45677888885 57889999999 999999999875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.30  E-value=0.22  Score=39.57  Aligned_cols=67  Identities=25%  Similarity=0.353  Sum_probs=47.6

Q ss_pred             HHHHHHh--cCCCEEEeeCCCCCCCH----------HHHHHHHHHHHHHHHhcCCeEEEEecCHH---------------
Q 046954           52 ALARTLA--NEPEVLLLDEPTSALDP----------ISTQNIEDVLVKLKKKHGMTIVMVSHSIK---------------  104 (146)
Q Consensus        52 ~ia~al~--~~p~llllDEPt~~LD~----------~~~~~~~~~l~~l~~~~g~tvi~itH~~~---------------  104 (146)
                      +.++.+.  .+|+++++|..+.-...          .....+...|+.++++.|++||+++|--.               
T Consensus       300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dl  379 (444)
T 2q6t_A          300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDL  379 (444)
T ss_dssp             HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGG
T ss_pred             HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHh
Confidence            3444444  58999999988764432          12346777788888888999999998211               


Q ss_pred             ----HHHhhcCeEEEEEC
Q 046954          105 ----QIQRIADVVCLLVN  118 (146)
Q Consensus       105 ----~~~~~~d~v~~l~~  118 (146)
                          .+...||.|++|..
T Consensus       380 r~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          380 RESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             GGGCTTGGGCSEEEEEEE
T ss_pred             cchhHHHHhCCEEEEEec
Confidence                35678999999953

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.95  E-value=0.00052  Score=49.13  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             cCCCChhHHHHHHHH-HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHhhcCe
Q 046954           40 GAEISVGQAQRVALA-RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADV  112 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia-~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-~~~~~d~  112 (146)
                      ...+|+||+|+++++ ++++.++.++++|||...              ++.. .--.+++++++.+. +.+...|
T Consensus       109 ~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~--------------~l~~-~~d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          109 ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR--------------DLTA-IWDVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------------GGGG-TCSEEEEECCCHHHHHHHHHHH
T ss_pred             cccCCCCCceEEcCCCcEEEECCceeccCCchhH--------------HHHH-hcCEEEEEeCCHHHHHHHHHHH
Confidence            346799999999998 888888888888888410              1111 12366777777665 4555555

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.92  E-value=0.00044  Score=51.99  Aligned_cols=48  Identities=15%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC------------CCCHHHHHHHHHHH
Q 046954           36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS------------ALDPISTQNIEDVL   85 (146)
Q Consensus        36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~------------~LD~~~~~~~~~~l   85 (146)
                      .++.+.+|||||+|++.|++|+.++|++|  |||+.            --|...+..+++.+
T Consensus       131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            44556789999999999999999999975  99874            23566666665544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.87  E-value=0.077  Score=36.93  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=32.7

Q ss_pred             HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954           51 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK   89 (146)
Q Consensus        51 v~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~   89 (146)
                      ...|++++.+|++.++|  ||++|..+...+++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999887653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.32  E-value=4.7e-05  Score=59.90  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=43.0

Q ss_pred             CCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHHH---H-----H-HHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           42 EISVGQAQRVALARTLANEPEV--LLLDEPTSALDPIS---T-----Q-NIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~l--lllDEPt~~LD~~~---~-----~-~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      .+|+|  ||+++++++..+|++  +|+||+|+.||...   .     + ...+.+..+ . .|.|.+.+.|.+.
T Consensus       283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~-~g~t~~~~a~r~~  352 (372)
T 2ewv_A          283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY-K-QGLITLEDAMEAS  352 (372)
T ss_dssp             ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT-T-TSSSCTTTTTSSC
T ss_pred             ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH-H-CCCCCHHHHHHHc
Confidence            45888  889999999999999  99999999998651   1     2 233334433 3 3888877777654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.23  E-value=0.016  Score=43.95  Aligned_cols=37  Identities=14%  Similarity=0.009  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHH
Q 046954           19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR   55 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~   55 (146)
                      ..++.++++.++++....++++..|||.++++++|||
T Consensus       264 ~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          264 GCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             TCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3568899999999744778899999998899999986

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=90.86  E-value=0.14  Score=42.51  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             cCCCChh-HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH---------hh
Q 046954           40 GAEISVG-QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RI  109 (146)
Q Consensus        40 ~~~LSgG-~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~---------~~  109 (146)
                      .+.|+.+ ++|...+++.++.+|.-++++.+++++|..+. ...++++++....+.||+++||- +.+.         -+
T Consensus       162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK~-Dlv~~g~~~~~~~~l  239 (608)
T 3szr_A          162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTKP-DLVDKGTEDKVVDVV  239 (608)
T ss_dssp             -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEECG-GGSSSSSTTCCCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecch-hhcCcccHHHHHHHH
Confidence            5566544 45888899999999999999999999998854 46777777754435788888882 3332         22


Q ss_pred             cCeEEEEECCEEE
Q 046954          110 ADVVCLLVNGEIV  122 (146)
Q Consensus       110 ~d~v~~l~~G~i~  122 (146)
                      .++++.++.|-++
T Consensus       240 ~~~~~~l~~g~~~  252 (608)
T 3szr_A          240 RNLVFHLKKGYMI  252 (608)
T ss_dssp             --CCSCCSSCEEC
T ss_pred             hCcccccCceEEE
Confidence            3445556666553

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.78  E-value=0.0037  Score=49.89  Aligned_cols=39  Identities=26%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954           22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL   65 (146)
Q Consensus        22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll   65 (146)
                      +...+..+++.. +.  .+.+|||||+||  |||+++.+|++..
T Consensus       276 ~i~rL~~lgl~~-~~--~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          276 AVTRLRDMGIEP-FL--ISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHHHHHHHTCCH-HH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHHHHHcCCcH-HH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            334566778853 32  567899999999  9999999999875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=90.75  E-value=0.71  Score=33.46  Aligned_cols=52  Identities=25%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---------C-HHHHHhhcCeEEEEE
Q 046954           60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---------S-IKQIQRIADVVCLLV  117 (146)
Q Consensus        60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---------~-~~~~~~~~d~v~~l~  117 (146)
                      +|+++++||-.. |+..    +.+.+..+++ .|..||++.|         . ...+..+||+|.-|+
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 6643    4455566665 4999999999         2 456777999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.60  E-value=0.018  Score=40.66  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH--HhhcCeEEEEEC
Q 046954           43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI--QRIADVVCLLVN  118 (146)
Q Consensus        43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~--~~~~d~v~~l~~  118 (146)
                      .|.|+.+|..++..+..+|+.+...  .+.++|.....+.+.+...   .+.++|+.+|.+.+.  ...||.+++++-
T Consensus        60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            3678999999999988888654333  3355666666655554332   255888889987665  677899998854

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=90.39  E-value=1.5  Score=34.10  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             HHHHHHHHHh--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCCeEEEEecCHHH-----
Q 046954           49 QRVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSIKQ-----  105 (146)
Q Consensus        49 qrv~ia~al~--~~p~llllDEPt~~LD-~------------~~~~~~~~~l~~l---~~~~g~tvi~itH~~~~-----  105 (146)
                      +.+.+++.++  .+++++++|..++-.. .            ...+.+.+.++++   +++.+++||++.|-...     
T Consensus       139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f  218 (366)
T 1xp8_A          139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY  218 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred             HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence            4456667665  5789999999887541 0            1123344555554   56779999999886431     


Q ss_pred             -----------HHhhcCeEEEEECCE
Q 046954          106 -----------IQRIADVVCLLVNGE  120 (146)
Q Consensus       106 -----------~~~~~d~v~~l~~G~  120 (146)
                                 +..++|-++.|+.++
T Consensus       219 g~p~~~~gg~al~~~a~~rl~L~r~~  244 (366)
T 1xp8_A          219 GNPETTTGGRALKFYASVRLDVRKIG  244 (366)
T ss_dssp             -------CHHHHHHHCSEEEEEEEES
T ss_pred             CCccccCCcchhhheeeEEEEEEecc
Confidence                       356788888887554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=90.26  E-value=0.21  Score=38.86  Aligned_cols=66  Identities=17%  Similarity=0.225  Sum_probs=45.7

Q ss_pred             HHHHHHHcCCChh---hhcCCcCCCChhHHHHHHHH----HHH-hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 046954           22 VYKLLSLADLDSS---FLSKTGAEISVGQAQRVALA----RTL-ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK   91 (146)
Q Consensus        22 ~~~~l~~~~l~~~---~~~~~~~~LSgG~~qrv~ia----~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~   91 (146)
                      +..+++.+++...   ....++..+|+|+++++.++    +++ ..+|++    +|+|++|..+...+.+.|.++...
T Consensus       281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence            3456666654311   11344667898888888877    555 434454    899999999999999999886543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=90.11  E-value=0.72  Score=34.75  Aligned_cols=101  Identities=14%  Similarity=0.150  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHcCCChh-hhcC-CcC-CCChhH-HHHHHHHHHHh---cCCCEEEeeCCCCCCC--------HH----HHH
Q 046954           19 ENEVYKLLSLADLDSS-FLSK-TGA-EISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALD--------PI----STQ   79 (146)
Q Consensus        19 ~~~~~~~l~~~~l~~~-~~~~-~~~-~LSgG~-~qrv~ia~al~---~~p~llllDEPt~~LD--------~~----~~~   79 (146)
                      .+++...++.++++.. +.++ .+. ..+..+ .+-+..++.++   .+|+++++|.-++-..        ..    ...
T Consensus       156 ~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~  235 (322)
T 2i1q_A          156 PERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG  235 (322)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHH
Confidence            4566666677776421 1111 111 223332 23344455555   4689999998775431        11    124


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCH---H-------------HHHhhcCeEEEEECC
Q 046954           80 NIEDVLVKLKKKHGMTIVMVSHSI---K-------------QIQRIADVVCLLVNG  119 (146)
Q Consensus        80 ~~~~~l~~l~~~~g~tvi~itH~~---~-------------~~~~~~d~v~~l~~G  119 (146)
                      ++...|+.++++.|++||++.|-.   +             .+...+|.++.|+..
T Consensus       236 ~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~  291 (322)
T 2i1q_A          236 RHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG  291 (322)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence            556667777778899999988732   1             366788999999744

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=89.98  E-value=0.54  Score=36.44  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=45.7

Q ss_pred             cCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH------------hhcCeEEEEECC
Q 046954           59 NEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ------------RIADVVCLLVNG  119 (146)
Q Consensus        59 ~~p~llllDEPt~~LD---~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~------------~~~d~v~~l~~G  119 (146)
                      ..|.++++||--.-++   +.....+.+.+++.+ +.|..++++||++..+.            ..|+..+++...
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~  335 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG  335 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence            3588999999988884   667777888888875 57999999999987543            445566666544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=89.27  E-value=0.079  Score=43.89  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK   87 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~   87 (146)
                      +.+|+|++|++..++....++.+|++||... |++..+..+.+.|.+
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            5799999999999999999999999999988 899999988888875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=87.90  E-value=0.076  Score=40.37  Aligned_cols=47  Identities=13%  Similarity=0.203  Sum_probs=27.7

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH--HhcCCeEEEEecCHHHH
Q 046954           60 EPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVMVSHSIKQI  106 (146)
Q Consensus        60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~--~~~g~tvi~itH~~~~~  106 (146)
                      .|.++++||+....+......+..++..+.  ...+.++|++||+....
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~  176 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV  176 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence            388999999987653321223333333331  23367899999987643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=87.80  E-value=1  Score=33.73  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=32.6

Q ss_pred             hcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954           58 ANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        58 ~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      ..+|++|++||+.. ..+...+..+...+..+.. .|..+|++++.
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~  140 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR  140 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            35799999999865 3344778888889888764 46777777663

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=87.34  E-value=0.71  Score=31.99  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             hcCCCEEEeeCCCC-CCCHHHHHHHH-HHHHHHHHhcCCeEEEEec-CHHHHHh
Q 046954           58 ANEPEVLLLDEPTS-ALDPISTQNIE-DVLVKLKKKHGMTIVMVSH-SIKQIQR  108 (146)
Q Consensus        58 ~~~p~llllDEPt~-~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH-~~~~~~~  108 (146)
                      +.++++|++||+-. .++...+..++ .++...... +..+|++|+ ++..+..
T Consensus       113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~-~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFE-NLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHT-TCCEEEEESSCHHHHHH
T ss_pred             hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCCCHHHHHH
Confidence            45678999999933 34443344344 455554333 455555555 5555443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=87.11  E-value=3.4  Score=31.09  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             HHHHHHh--cCCC--EEEeeCCCCCC------C-HHHHHHHHHHHHHHHHhcCCeEEEEecCH-----------------
Q 046954           52 ALARTLA--NEPE--VLLLDEPTSAL------D-PISTQNIEDVLVKLKKKHGMTIVMVSHSI-----------------  103 (146)
Q Consensus        52 ~ia~al~--~~p~--llllDEPt~~L------D-~~~~~~~~~~l~~l~~~~g~tvi~itH~~-----------------  103 (146)
                      +.++.+.  .+++  ++++|--+.--      + ......+...|+.++++.|++||+++|--                 
T Consensus       169 ~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr  248 (315)
T 3bh0_A          169 SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLR  248 (315)
T ss_dssp             HHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGT
T ss_pred             HHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhh
Confidence            3444444  3688  99999543211      1 13345667778888888899999999932                 


Q ss_pred             --HHHHhhcCeEEEEEC
Q 046954          104 --KQIQRIADVVCLLVN  118 (146)
Q Consensus       104 --~~~~~~~d~v~~l~~  118 (146)
                        ..++..||-|++|..
T Consensus       249 ~sg~ie~~aD~vi~L~r  265 (315)
T 3bh0_A          249 ESGQLEQDADIIEFLYR  265 (315)
T ss_dssp             TTSHHHHHCSEEEEEEE
T ss_pred             hhhhhHhhCCEEEEEec
Confidence              136778999999963

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=85.17  E-value=0.49  Score=35.58  Aligned_cols=65  Identities=14%  Similarity=0.228  Sum_probs=47.0

Q ss_pred             CChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHHhcCC--eEEEEecCHHHHHhhcCeEE
Q 046954           43 ISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPIS-TQNIEDVLVKLKKKHGM--TIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        43 LSgG~~qrv~ia~al~--~~p~llllDEPt~~LD~~~-~~~~~~~l~~l~~~~g~--tvi~itH~~~~~~~~~d~v~  114 (146)
                      +|+|++   .+++.+.  ..|.++++    +.+|... +..+.+.+.++++..|.  .+.+++|+-..+..+.|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            898886   4566666  78889998    7899887 67788888888765454  55666777666666666543

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=85.11  E-value=5.5  Score=31.87  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             HHHHHHHHHh--cCCCEEEeeCCCCCCC--------HHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------------
Q 046954           49 QRVALARTLA--NEPEVLLLDEPTSALD--------PISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------------  104 (146)
Q Consensus        49 qrv~ia~al~--~~p~llllDEPt~~LD--------~~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------------  104 (146)
                      +.+..++.++  .+|+++++|=-+ .+.        ......+...|+.++++.|++||+++|--.              
T Consensus       341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~  419 (503)
T 1q57_A          341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS  419 (503)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence            3444455543  479999999433 221        123346777788888888999999988431              


Q ss_pred             --------HHHhhcCeEEEEE
Q 046954          105 --------QIQRIADVVCLLV  117 (146)
Q Consensus       105 --------~~~~~~d~v~~l~  117 (146)
                              .+...||-|+.|.
T Consensus       420 l~dlr~s~~ie~~aD~vi~l~  440 (503)
T 1q57_A          420 ITDLRGSGALRQLSDTIIALE  440 (503)
T ss_dssp             SSSCSSSSHHHHHCSEEEEEE
T ss_pred             hhhhccchHhhecCcEEEEEE
Confidence                    3567799999996

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=84.81  E-value=0.7  Score=33.80  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             HHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           53 LARTLANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        53 ia~al~~~p~llllDEPt~~-LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      +..++..+|+++|+|||-.. .+.......++.+..+.. .|..++.++|
T Consensus        77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N  125 (228)
T 2r8r_A           77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN  125 (228)
T ss_dssp             HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred             HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence            33445578999999997642 443333334444444443 4889999988

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=84.35  E-value=1.9  Score=31.62  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC----------HHHHHhhcCeEEEEE
Q 046954           58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLLV  117 (146)
Q Consensus        58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~----------~~~~~~~~d~v~~l~  117 (146)
                      +.+.+++++||-.-..+      +.+++..+.. .|+.||+..++          ...+..+||.|.-|+
T Consensus        88 ~~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           88 ALGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             HTTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             hccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            36789999999988754      4555554543 59999999999          445668899997763

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=84.10  E-value=4.2  Score=37.94  Aligned_cols=73  Identities=12%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             HHHHHHHHHh--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHH---HHHhcCCeEEEEecCH-------
Q 046954           49 QRVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVK---LKKKHGMTIVMVSHSI-------  103 (146)
Q Consensus        49 qrv~ia~al~--~~p~llllDEPt~~LD-~------------~~~~~~~~~l~~---l~~~~g~tvi~itH~~-------  103 (146)
                      +....++.++  .+|+++++|+..+-.. .            ...+.+.+.+++   ++++.|++||+++|-.       
T Consensus       797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~  876 (1706)
T 3cmw_A          797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF  876 (1706)
T ss_dssp             HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred             HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence            4445555443  6899999999887652 1            123345445544   4667899999998821       


Q ss_pred             ---------HHHHhhcCeEEEEECCEE
Q 046954          104 ---------KQIQRIADVVCLLVNGEI  121 (146)
Q Consensus       104 ---------~~~~~~~d~v~~l~~G~i  121 (146)
                               ..+...+|-++.++++..
T Consensus       877 Gdp~~p~gs~~Leq~ADvvl~L~R~~~  903 (1706)
T 3cmw_A          877 GNPETTTGGNALKFYASVRLDIRRIGA  903 (1706)
T ss_dssp             SCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred             CCccccCCcchhhheeeEEEEEEeccc
Confidence                     246778899999975543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=83.95  E-value=0.86  Score=34.95  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=41.2

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHH
Q 046954           42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQ  105 (146)
Q Consensus        42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g-~tvi~itH~~~~  105 (146)
                      +.++.++++..+++..+.+|+++|+.-..+..|... .....+++.+.. .| .+++++|. ++.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~-~~~~~i~V~nK-~Dl  215 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDP-SGDRTFGVLTK-IDL  215 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCT-TCTTEEEEEEC-GGG
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcc-cCCCEEEEEeC-Ccc
Confidence            356788999999999999999888874444455443 445566666643 35 46666665 443

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=83.69  E-value=6.7  Score=25.19  Aligned_cols=47  Identities=17%  Similarity=0.420  Sum_probs=40.7

Q ss_pred             hcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           58 ANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        58 ~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      ..+|+.+++| .....+|..+...+.++.+++.+ .|..++++.-....
T Consensus        46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v   93 (130)
T 4dgh_A           46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHK-RGIKVLISGANSRV   93 (130)
T ss_dssp             SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEECCCHHH
T ss_pred             ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence            4678999999 99999999999999999999875 59999998777543

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=83.59  E-value=2.8  Score=29.45  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=38.4

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH----------HHHHhhcCeEEEEE
Q 046954           60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLV  117 (146)
Q Consensus        60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~----------~~~~~~~d~v~~l~  117 (146)
                      +.+++++||--- +|+..    .+.+..+... |+.||+..++.          ..+..+||.|.-|+
T Consensus        81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999654 66543    4566666654 89999999854          56778999996654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=83.16  E-value=4.4  Score=31.97  Aligned_cols=56  Identities=9%  Similarity=0.188  Sum_probs=42.0

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH  101 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH  101 (146)
                      +.||..+.+++.-|...+.+.++++.|+|...  +   ..+...++++.++.|..+|+|-+
T Consensus       263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~---~~l~~~~~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--L---MEVRARARRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--H---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--H---HHHHHHHHHHHHHcCCCEEEEcC
Confidence            47999999999988888888889999887443  3   34566667776666888888743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=82.89  E-value=1.3  Score=30.91  Aligned_cols=44  Identities=9%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCe-EEEEecC
Q 046954           58 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMT-IVMVSHS  102 (146)
Q Consensus        58 ~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~t-vi~itH~  102 (146)
                      +.+|.++++||...-- +......+...+...... +.. +|++++.
T Consensus       102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~  147 (242)
T 3bos_A          102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASA  147 (242)
T ss_dssp             GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESS
T ss_pred             ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCC
Confidence            3678999999965432 233377788888887653 655 7777773

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=82.85  E-value=1.9  Score=35.19  Aligned_cols=51  Identities=14%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             HHHHHHHHHH-hcCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954           48 AQRVALARTL-ANEPE-VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        48 ~qrv~ia~al-~~~p~-llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~  105 (146)
                      +|++.+++++ ...|. ++|...|++|.|..      +.++.+.+..|.|.+++|| ++.
T Consensus       398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK-LD~  450 (503)
T 2yhs_A          398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK-LDG  450 (503)
T ss_dssp             HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred             HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc-CCC
Confidence            5778888866 34574 55555588775443      3455555556899999999 444

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=82.57  E-value=0.78  Score=31.85  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      +|.++++||.-. +++.....+.+.+.+.  ..+..+|++|++..
T Consensus       126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~  167 (250)
T 1njg_A          126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred             CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence            478999999766 7887777777766543  13678888888764

>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B

Probab=82.16  E-value=0.36  Score=35.33  Aligned_cols=40  Identities=10%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC
Q 046954           21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE   62 (146)
Q Consensus        21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~   62 (146)
                      ++..+-+.+|.  .+.++.++.||||+.|+...+++|+..|+
T Consensus        54 ~i~~le~~lg~--~L~~R~~~~lsg~~~~lt~~g~~l~~~~~   93 (265)
T 1b9m_A           54 AINEMNQLSEH--ILVERATGGKGGGGAVLTRYGQRLIQLYD   93 (265)
T ss_dssp             HHHHHHHHHTS--CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence            46667777887  37889999999999999999999999887

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*

Probab=80.71  E-value=9.2  Score=24.74  Aligned_cols=45  Identities=16%  Similarity=0.313  Sum_probs=39.7

Q ss_pred             cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954           59 NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK  104 (146)
Q Consensus        59 ~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~  104 (146)
                      .+|+.+++| .....+|..+...+.++.+++.+ .|..++++.-+..
T Consensus        50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~   95 (135)
T 4dgf_A           50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEK-RGTILLLSGVSDR   95 (135)
T ss_dssp             SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHH-HTCEEEEESCCHH
T ss_pred             CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence            578999999 99999999999999999999875 5899999877654

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=80.37  E-value=4.4  Score=29.17  Aligned_cols=52  Identities=25%  Similarity=0.362  Sum_probs=39.6

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec----------CHHHHHhhcCeEEEEE
Q 046954           60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH----------SIKQIQRIADVVCLLV  117 (146)
Q Consensus        60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH----------~~~~~~~~~d~v~~l~  117 (146)
                      +.+++++||-.- +|+...    +.+..++.. |+.||+..+          -+..+..+||.|.-|+
T Consensus       101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQF-FDGDIV----EVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGG-SCTTHH----HHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCHHHH----HHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            479999999876 665432    556666554 999999999          5667888999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	9e-34
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-32
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-31
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-30
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-29
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-29
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	7e-29
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-27
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	5e-27
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	6e-27
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-26
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-26
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-24
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-24
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-24
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-23
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-23
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	5e-22
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-21
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-21
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-16
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	7e-08
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	9e-06

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  116 bits (292), Expect = 9e-34
 Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV +NI +  +++   K   +  V     L  ++   L++  A++S GQ QRVA+AR + 
Sbjct: 94  TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIV 152

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            EP+VLL+DEP S LD      +   + KL++K  +T + V+H   +   + D + ++  
Sbjct: 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR 212

Query: 119 GEIVEVLKP-DLLSEAKHPMALRFL 142
           G+++++  P ++           F+
Sbjct: 213 GQLLQIGSPTEVYLRPNSVFVATFI 237

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  111 bits (280), Expect = 4e-32
 Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENE-----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           T  +N+      + +     E       + L +A+L+  F +    ++S GQ QRVA+AR
Sbjct: 99  TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            LAN P ++L D+PT ALD  + + I  +L KL ++ G T+V+V+H I  + R  + +  
Sbjct: 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVARFGERIIY 217

Query: 116 LVNGEIVEVLKP 127
           L +GE+    K 
Sbjct: 218 LKDGEVEREEKL 229

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  109 bits (274), Expect = 3e-31
 Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 4/144 (2%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           TV  N+    +L    K   +  V +LLSL  L         + +S GQ QRVA+AR LA
Sbjct: 98  TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALA 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
           + P+VLL DE TSALDP +T++I ++L  + ++ G+TI++++H +  ++RI D V ++ N
Sbjct: 157 SNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN 216

Query: 119 GEIVEVLKP-DLLSEAKHPMALRF 141
           GE++E     ++ S  K P+A +F
Sbjct: 217 GELIEQDTVSEVFSHPKTPLAQKF 240

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  107 bits (268), Expect = 4e-30
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 7/148 (4%)

Query: 1   TVADNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART 56
           TV +N+   P ++   L++++      K L+   +D     K    +S GQ QRV++AR 
Sbjct: 105 TVLENVMEAP-IQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA 163

Query: 57  LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
           LA EP+VLL DEPTSALDP     +  + ++   + G T+V+V+H +   + ++  V  L
Sbjct: 164 LAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 222

Query: 117 VNGEIVEVLKP-DLLSEAKHPMALRFLQ 143
             G+I E   P  +    + P   +FL+
Sbjct: 223 HQGKIEEEGDPEQVFGNPQSPRLQQFLK 250

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  105 bits (263), Expect = 1e-29
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 4   DNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP 61
           DNI +  +LR     E +  V ++  L  L    L++   E+S GQ QRVAL R +  +P
Sbjct: 100 DNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP 158

Query: 62  EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
           +V L+DEP S LD      +   L KL+++ G+T + V+H   +   + D + ++  G +
Sbjct: 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218

Query: 122 VEVLKP-DLLSEAKHPMALRFL 142
            +V  P ++  +  +     F+
Sbjct: 219 QQVGSPDEVYDKPANTFVAGFI 240

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  104 bits (260), Expect = 4e-29
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 1   TVADNIRYGPQLRGKKLTENE-VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN 59
           TV +N+  G   R  K      +  + SL       L + G  +S G+ Q +A+ R L +
Sbjct: 97  TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156

Query: 60  EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
            P++L++DEP+  L PI    + +V+ K+ ++ G TI++V  +     ++A    +L  G
Sbjct: 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETG 215

Query: 120 EIVEVLKPD 128
           +IV   K  
Sbjct: 216 QIVLEGKAS 224

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  104 bits (260), Expect = 7e-29
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 17/140 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQR 50
           TV +NI  G        T+ EV +   +A+             + + + G ++S GQ QR
Sbjct: 107 TVKENILLGR----PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 162

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +++AR   N P +L+LDE TSALD  S   I++ L  L K    T ++V+H +  I   A
Sbjct: 163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTI-THA 219

Query: 111 DVVCLLVNGEIVEVLKPDLL 130
           D + ++ NG IVE      L
Sbjct: 220 DKIVVIENGHIVETGTHREL 239

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYK-------LLSLADLDSSFLSKTGAEISVGQAQRVAL 53
           ++ +NI YG   +                  +  L     + + + G+++S GQ Q VAL
Sbjct: 103 SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVAL 162

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR L  +P VL+LD+ TSALD  S   +E +L +  +++  ++++++  +  +   AD +
Sbjct: 163 ARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHI 221

Query: 114 CLLVNGEIVEVLKPDLLSEAK 134
             L  G I E      L E K
Sbjct: 222 LFLEGGAIREGGTHQQLMEKK 242

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 99.1 bits (247), Expect = 5e-27
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 16/144 (11%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQR 50
           TVA+NI Y    R ++ +  ++ +   +A              + + + G  +S GQ QR
Sbjct: 104 TVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 160

Query: 51  VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
           +A+AR L  +  +L+LDE TSALD  S + I+  L +L+K    T ++++H +  I   A
Sbjct: 161 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQA 217

Query: 111 DVVCLLVNGEIVEVLKPDLLSEAK 134
           D + ++ +G IVE      L    
Sbjct: 218 DEIVVVEDGIIVERGTHSELLAQH 241

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 98.9 bits (246), Expect = 6e-27
 Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 1   TVADNIRYGPQLRG---------------KKLTENEVYKLLSLADLDSSFLSKTGAEISV 45
           TV +N+  G    G               ++    + +K+L    L      +   E+S 
Sbjct: 95  TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSG 153

Query: 46  GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105
           GQ + V + R L   P+++++DEP + + P    +I + +++LK K G+T +++ H +  
Sbjct: 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDI 212

Query: 106 IQRIADVVCLLVNGEIVEVLKPD 128
           +    D + ++ NG+I+   + +
Sbjct: 213 VLNYIDHLYVMFNGQIIAEGRGE 235

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 97.7 bits (243), Expect = 1e-26
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 4   DNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP 61
           +N+ +G +L G  K++    V ++  +  L +  L +    +S GQ QRVA+ RTL  EP
Sbjct: 91  ENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEP 149

Query: 62  EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121
            V LLDEP S LD      +   + +L K+ G T++ V+H   +   +AD + +L  G +
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209

Query: 122 VEVLKP-DLLSEAKHPMALRFL 142
            +V KP +L           F+
Sbjct: 210 AQVGKPLELYHYPADRFVAGFI 231

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.7 bits (243), Expect = 4e-26
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 1   TVADNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55
           T+ +NI +G      +             +   A+ D++ L + G  +S GQ  R++LAR
Sbjct: 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 171

Query: 56  TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115
            +  + ++ LLD P   LD  + + + +  V        T ++V+  ++ + R AD + +
Sbjct: 172 AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTSKMEHL-RKADKILI 229

Query: 116 LVNGEIVEVLKPDLLSEAKHPMALRFL 142
           L  G          L   +   + + +
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLM 256

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 92.2 bits (229), Expect = 2e-24
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 13/155 (8%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DSSFLSKTGAEISVGQAQRVAL 53
           T+ +N+ YG +         +V  L              ++ + + G +IS GQ QR+A+
Sbjct: 91  TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150

Query: 54  ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
           AR     P++L+LDE T++LD  S   ++  L  L K  G T ++++H +  I   AD +
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTI-VDADKI 207

Query: 114 CLLVNGEIVEVLKPDLLSEAKHPMALRFL--QLSG 146
             +  G+I    K + L  A HP+  +++  QL+ 
Sbjct: 208 YFIEKGQITGSGKHNELV-ATHPLYAKYVSEQLTV 241

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 91.1 bits (226), Expect = 2e-24
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
           +V D ++    L G K+ +NE+   L   ++      K   E+S G  +RV LA TL   
Sbjct: 86  SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVN 143

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116
            E+ +LD+P  A+D  S   +   ++++ K+ G+ I+     +       DV   L
Sbjct: 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENL 195

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 91.1 bits (226), Expect = 4e-24
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 1   TVADNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALA 54
           ++ DNI         +              +  L +  ++ + + GA +S GQ QR+A+A
Sbjct: 92  SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 151

Query: 55  RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
           R L N P++L+ DE TSALD  S   I   + K+ K  G T+++++H +  + + AD + 
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTV-KNADRII 208

Query: 115 LLVNGEIVEVLKPD-LLSEAKHP 136
           ++  G+IVE  K   LLSE +  
Sbjct: 209 VMEKGKIVEQGKHKELLSEPESL 231

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.9 bits (220), Expect = 3e-23
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 1   TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
              + +R+            E  V +   +A L    +    +  S G  +++ +AR L 
Sbjct: 91  QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALM 149

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
             P + +LDEPTS LD ++ + +  +L +  ++  +TI++ SH++ +++ + D + L+ N
Sbjct: 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNMLEVEFLCDRIALIHN 208

Query: 119 GEIVEVLKPD 128
           G IVE    +
Sbjct: 209 GTIVETGTVE 218

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 88.1 bits (218), Expect = 5e-23
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 18/146 (12%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN- 59
            V   +      + +    N+V   L+L D     L ++  ++S G+ QRV LA  +   
Sbjct: 88  PVWHYLTLHQHDKTRTELLNDVAGALALDD----KLGRSTNQLSGGEWQRVRLAAVVLQI 143

Query: 60  ------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113
                   ++LLLDEP ++LD      ++ +L  L +  G+ IVM SH +    R A   
Sbjct: 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLNHTLRHAHRA 202

Query: 114 CLLVNGEIV------EVLKPDLLSEA 133
            LL  G+++      EVL P  L++A
Sbjct: 203 WLLKGGKMLASGRREEVLTPPNLAQA 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 85.9 bits (212), Expect = 5e-22
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 1   TVADNIRYGPQLR--GKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA 58
           T  +NI +        K+     V ++  + D+    L+    E+S  Q QRVALAR L 
Sbjct: 98  TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALV 156

Query: 59  NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118
            +P +LLLDEP S LD     +   ++ +++ + G+T+++VSH    I  IAD V +LV 
Sbjct: 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK 216

Query: 119 GEIVEVLKP-DLLSEAKHPMALRFL 142
           G++V+V KP DL            +
Sbjct: 217 GKLVQVGKPEDLYDNPVSIQVASLI 241

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 84.7 bits (209), Expect = 1e-21
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 1   TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE 60
            V  N+ +G +++  K     V        ++   L +    +S G+ QRVALAR L   
Sbjct: 88  NVKKNLEFGMRMKKIK-DPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTN 145

Query: 61  PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120
           P++LLLDEP SALDP + +N  ++L  L KK+ +T++ ++H   + + +AD + ++++G+
Sbjct: 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205

Query: 121 IVEVLKP-DLLSEAKHPMALRFL 142
           +++V KP ++  +        F+
Sbjct: 206 LIQVGKPEEIFEKPVEGRVASFV 228

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 82.8 bits (204), Expect = 6e-21
 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 1/139 (0%)

Query: 4   DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEV 63
            NI YG +   +   +  V ++     +    L +  A +S G+ QRVALAR L  +P +
Sbjct: 89  RNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRL 147

Query: 64  LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123
           LLLDEP SA+D  +   + + L  ++++  + I+ V+H + +   +AD V +++NG IVE
Sbjct: 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207

Query: 124 VLKPDLLSEAKHPMALRFL 142
             K   L  AK+     FL
Sbjct: 208 KGKLKELFSAKNGEVAEFL 226

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 46.9 bits (110), Expect = 7e-08
 Identities = 10/93 (10%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 36  LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
           ++    E         A      +  +V+++DE          +   D++ ++     + 
Sbjct: 75  VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS--KKFRDLVRQIMHDPNVN 132

Query: 96  IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128
           +V     I+ +  +   +  L    ++E+   +
Sbjct: 133 VVATIP-IRDVHPLVKEIRRLPGAVLIELTPEN 164

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 9e-06
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 46  GQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
           G+    ALA   A          +LDE  +ALD  + Q I   + + +      IV +S 
Sbjct: 336 GEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV-ISL 394

Query: 102 SIKQIQRIADV 112
               +   +D 
Sbjct: 395 K-NTMFEKSDA 404

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.83
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.41
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.04
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.51
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.05
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.51
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.21
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	89.54
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	88.67
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	83.22

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.5e-44  Score=267.01  Aligned_cols=142  Identities=27%  Similarity=0.422  Sum_probs=127.3

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++.+.  .++++.++++.++++ ++.+++|.+|||||||||+|||||+.+|++|||||||+||||.++
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~  172 (239)
T d1v43a3          94 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR  172 (239)
T ss_dssp             CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHH
Confidence            79999999887665432  345688999999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      ..+++.|++++++.|+|+|+||||++++.++||||++|++|+|++.|++++++ ++.+++.+.|++
T Consensus       173 ~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~~~lg  238 (239)
T d1v43a3         173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG  238 (239)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence            99999999998777999999999999999999999999999999999999986 455677887765

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.3e-44  Score=266.77  Aligned_cols=142  Identities=32%  Similarity=0.425  Sum_probs=128.4

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+|||.+++..++.+.  .++++.++++.+|++ ++.+++|++|||||||||+|||||+++|++|||||||+|||+.++
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~  176 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR  176 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGH
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHH
Confidence            79999999987655432  345689999999995 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      ..+++.|++++++.|+|+|+||||++++.++||||++|++|+|++.|+++++. ++.+.+...|++
T Consensus       177 ~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~~~flG  242 (242)
T d1oxxk2         177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG  242 (242)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred             HHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhccC
Confidence            99999999998778999999999999999999999999999999999999986 456677777764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=6.8e-44  Score=265.67  Aligned_cols=141  Identities=30%  Similarity=0.474  Sum_probs=127.5

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++.+.  .++++.++++.++++ ++.+++|++|||||||||+|||||+++|++|||||||+|||+.++
T Consensus        97 tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~  175 (240)
T d1g2912          97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (240)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence            79999999987765432  245688999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL  142 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~  142 (146)
                      ..+++.|++++++.|+|||+||||++++..+||||++|++|+|++.|+++++. ++.+++...|+
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~~~fi  240 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI  240 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhC
Confidence            99999999998777999999999999999999999999999999999999975 45667777663

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.5e-44  Score=266.28  Aligned_cols=142  Identities=32%  Similarity=0.434  Sum_probs=126.5

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.|++........++++.++++.+|++ ++.+++|.+|||||||||+|||||+++|++|||||||+|||+.++..
T Consensus        86 tV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~  164 (240)
T d2onka1          86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV  164 (240)
T ss_dssp             CHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred             hhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHH
Confidence            79999999875433223346789999999996 68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      +++.|++++++.|+|||+||||++++.++||||++|++|++++.|+++++.++.+.+...|++
T Consensus       165 i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl~  227 (240)
T d2onka1         165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS  227 (240)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHhC
Confidence            999999998877999999999999999999999999999999999999987655555556654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-44  Score=266.37  Aligned_cols=138  Identities=37%  Similarity=0.550  Sum_probs=124.4

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.+++...+.+.  .++++.++++.+||+ ++.+++|++|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~  176 (240)
T d3dhwc1          98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (240)
T ss_dssp             BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHh
Confidence            68999999876655432  346789999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHH
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMAL  139 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~  139 (146)
                      ..+++.|++++++.|+|||+||||++++..+||||++|++|+|++.|+++++.+ +.++++.
T Consensus       177 ~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~t~  238 (240)
T d3dhwc1         177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ  238 (240)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTTTT
T ss_pred             hHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChHHc
Confidence            999999999988779999999999999999999999999999999999999864 4555543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.7e-43  Score=261.78  Aligned_cols=141  Identities=30%  Similarity=0.532  Sum_probs=127.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      ||+||+.++...++.+ ..+++.++++.+++. ++.++++.+|||||||||+|||||+++|++|||||||+||||.++..
T Consensus        88 tV~enl~~~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~  165 (229)
T d3d31a2          88 NVKKNLEFGMRMKKIK-DPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN  165 (229)
T ss_dssp             CHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHH
T ss_pred             cHHHHHHHHHhhcccc-HHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHH
Confidence            7999999988766543 456899999999996 68999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      +++.|++++++.|.|||+||||++++..+||||++|++|+|++.|+++++.+ +.+.....|++
T Consensus       166 i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v~~flG  229 (229)
T d3d31a2         166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVG  229 (229)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred             HHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhccC
Confidence            9999999987779999999999999999999999999999999999999854 44556666653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-44  Score=264.51  Aligned_cols=142  Identities=32%  Similarity=0.502  Sum_probs=95.8

Q ss_pred             ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...++.+  ..++++.++++.+++. ++.+++|.+|||||||||+|||||+++|++|||||||+||||.++
T Consensus        88 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~  166 (232)
T d2awna2          88 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  166 (232)
T ss_dssp             -----------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEESTTTTSCHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence            7899999987665543  2356789999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ  143 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~  143 (146)
                      ..+++.|+++.++.|+|||+||||++++..+||||++|++|+|++.|+++++.. +.+.+...|++
T Consensus       167 ~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v~~flG  232 (232)
T d2awna2         167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIG  232 (232)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHHHHhcC
Confidence            999999999988789999999999999999999999999999999999999764 45667777753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.6e-41  Score=255.54  Aligned_cols=142  Identities=34%  Similarity=0.495  Sum_probs=124.1

Q ss_pred             ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954            1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS   77 (146)
Q Consensus         1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~   77 (146)
                      ||.||+.++.. ..+.+  ...+++.++++.+++.....+++|.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       105 tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~  184 (258)
T d1b0ua_         105 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL  184 (258)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHH
T ss_pred             hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHH
Confidence            68899988642 22222  2245688899999997556788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954           78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ  143 (146)
Q Consensus        78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~  143 (146)
                      +..++++|+++++ +|+|||+||||++++..+||||++|++|+|+++|+++++. ++.+++.+.|+.
T Consensus       185 ~~~i~~ll~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~~~~~~~ll~  250 (258)
T d1b0ua_         185 VGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLK  250 (258)
T ss_dssp             HHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred             HHHHHHhhhhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHHHh
Confidence            9999999999986 4999999999999999999999999999999999999975 556788887764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.4e-41  Score=249.73  Aligned_cols=126  Identities=33%  Similarity=0.511  Sum_probs=111.6

Q ss_pred             ChHHHhhcCccccCC---C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954            1 TVADNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP   75 (146)
Q Consensus         1 tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~   75 (146)
                      ||+||+.++......   +  ...+++.++++.+++...+.+++|.+|||||||||+|||||+++|++|||||||++||+
T Consensus        99 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~  178 (230)
T d1l2ta_          99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS  178 (230)
T ss_dssp             CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCH
Confidence            789999987654321   1  12345778899999975578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954           76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP  127 (146)
Q Consensus        76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~  127 (146)
                      .++..+++.|++++++.|+|+|+||||++++ ++||||++|++|+|+++|++
T Consensus       179 ~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            9999999999999877899999999999877 79999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.2e-40  Score=246.27  Aligned_cols=141  Identities=28%  Similarity=0.416  Sum_probs=119.2

Q ss_pred             ChHHHhhcCccccCCCc-cHHHHHHHHHHc-CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL-TENEVYKLLSLA-DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~-~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      ||+||+.++...+.... ..+.+..+++.+ ++. +..++++++|||||||||+|||||+++|++|||||||+||||.++
T Consensus        97 tv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~  175 (240)
T d1ji0a_          97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV  175 (240)
T ss_dssp             BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHH
Confidence            68999988765443222 233455666665 563 578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL  144 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  144 (146)
                      ..++++|++++++ |+|||++|||++++.++||||++|++|+|+++|+++++..+ +...+.|++.
T Consensus       176 ~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~-~~v~~~ylG~  239 (240)
T d1ji0a_         176 SEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN-EMVRKAYLGV  239 (240)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC-HHHHHHHSCC
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC-HHHHHHhCcC
Confidence            9999999999764 99999999999999999999999999999999999998653 3455667654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.8e-39  Score=237.87  Aligned_cols=142  Identities=25%  Similarity=0.406  Sum_probs=121.5

Q ss_pred             ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954            1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST   78 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~   78 (146)
                      |+.||+.+...+++.+.  ..+.+..+++.+++. +..++++++||||||||++|||||+++|++|||||||+||||.++
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~  169 (238)
T d1vpla_          91 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA  169 (238)
T ss_dssp             BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHH
Confidence            57899988766554432  234577888999995 678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC--CCHHHHHHhhh
Q 046954           79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFLQL  144 (146)
Q Consensus        79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~~~~  144 (146)
                      +.++++|+++++ +|+|||++||+++++..+||||++|++|+|++.|+++++...  ...+...|.+.
T Consensus       170 ~~i~~~i~~~~~-~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~f~~~  236 (238)
T d1vpla_         170 REVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV  236 (238)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHHHHHh
Confidence            999999999976 499999999999999999999999999999999999998542  22455555443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.5e-39  Score=240.08  Aligned_cols=129  Identities=23%  Similarity=0.444  Sum_probs=112.8

Q ss_pred             ChHHHhhcCccccC------------CCcc---HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954            1 TVADNIRYGPQLRG------------KKLT---ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL   65 (146)
Q Consensus         1 tv~eni~~~~~~~~------------~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll   65 (146)
                      ||.||+.++.....            ....   .+++.++++.+++. ++.++++++|||||||||+|||||+++|++||
T Consensus        95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lli  173 (254)
T d1g6ha_          95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIV  173 (254)
T ss_dssp             BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHHHHHHHHHhCcCchh
Confidence            68999988642211            1111   24577889999995 57899999999999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954           66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS  131 (146)
Q Consensus        66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  131 (146)
                      |||||+|||+.++..+++.|+++++ .|+|||+||||++++.++||||++|++|+|+++|+++++.
T Consensus       174 lDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~  238 (254)
T d1g6ha_         174 MDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI  238 (254)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence            9999999999999999999999975 5999999999999999999999999999999999998753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=226.44  Aligned_cols=136  Identities=32%  Similarity=0.450  Sum_probs=107.4

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCC----------hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++...    ...+++..+++..++.          ....+..+..|||||||||+|||||+.+|++|||||||
T Consensus        92 Ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpt  167 (241)
T d2pmka1          92 SIIDNISLANPG----MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  167 (241)
T ss_dssp             BHHHHHCTTSTT----CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cccccccccCcc----ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCc
Confidence            689999886432    1233444444443331          11234567899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      |+||+.+.+.+++.|+++.+  |+|+|+|||+++.+ +.||||++|++|+|++.|+++++..........++.
T Consensus       168 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~  237 (241)
T d2pmka1         168 SALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ  237 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHH
Confidence            99999999999999999864  89999999999877 569999999999999999999986543333344443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-37  Score=229.32  Aligned_cols=132  Identities=31%  Similarity=0.433  Sum_probs=105.7

Q ss_pred             ChHHHhhcCccccCCCccHHHHH---------HHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVY---------KLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP   69 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP   69 (146)
                      ||++|+.++.....   ......         ..++.+  ++. ...++.+.+|||||||||+|||||+++|+++|||||
T Consensus       103 tv~eni~~g~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEp  178 (251)
T d1jj7a_         103 SLQENIAYGLTQKP---TMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDA  178 (251)
T ss_dssp             BHHHHHHCSCSSCC---CHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             chhhhhhhhhcccc---hHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeeccccCCcEEEecCc
Confidence            68999998753221   111111         222322  222 234567889999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954           70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM  137 (146)
Q Consensus        70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~  137 (146)
                      |++||+.+...+++.|.++.++.|+|+|+|||+++.+ +.||||++|++|+|++.|+++++......+
T Consensus       179 Ts~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y  245 (251)
T d1jj7a_         179 TSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGTHQQLMEKKGCY  245 (251)
T ss_dssp             TTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred             CcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence            9999999999999999998776799999999999877 569999999999999999999987654433

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=225.37  Aligned_cols=113  Identities=27%  Similarity=0.407  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 046954           18 TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN-------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK   90 (146)
Q Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~-------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~   90 (146)
                      ..+.+.++++.+++. ++.++++.+|||||||||+|||||++       +|++|||||||+|||+.++..+.++|+++++
T Consensus       102 ~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~  180 (231)
T d1l7vc_         102 RTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ  180 (231)
T ss_dssp             CHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            355678889999996 57899999999999999999999997       7799999999999999999999999999976


Q ss_pred             hcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954           91 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE  132 (146)
Q Consensus        91 ~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  132 (146)
                       .|+|||++|||++++.++||||++|++|+++++|+++++..
T Consensus       181 -~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~  221 (231)
T d1l7vc_         181 -QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  221 (231)
T ss_dssp             -TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred             -CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence             59999999999999999999999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.7e-36  Score=224.27  Aligned_cols=129  Identities=32%  Similarity=0.436  Sum_probs=104.8

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |+++|+.++...   ....+++.++++..++.+          .....++.+|||||||||+|||||+.+|++|||||||
T Consensus       104 ti~~n~~~~~~~---~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpt  180 (253)
T d3b60a1         104 TVANNIAYARTE---EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT  180 (253)
T ss_dssp             BHHHHHHTTTTS---CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred             chhhhhhhcCcc---cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence            567888776321   123455555555554421          1234567899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH  135 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  135 (146)
                      |+||+.+...+++.|+++.+  |+|+|+|||+++.+ ++||+|++|++|+|++.|+++++.....
T Consensus       181 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~~~~  242 (253)
T d3b60a1         181 SALDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLAQHG  242 (253)
T ss_dssp             SSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred             ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence            99999999999999999963  89999999999977 5799999999999999999999875433

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.8e-35  Score=222.05  Aligned_cols=135  Identities=33%  Similarity=0.431  Sum_probs=109.6

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+|||.++..    ....+++.++++.+++...          .....+.+||||||||++|||||+++|++|||||||
T Consensus       107 Ti~eNi~~g~~----~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpt  182 (255)
T d2hyda1         107 TVKENILLGRP----TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT  182 (255)
T ss_dssp             BHHHHHGGGCS----SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             CHHHHHhccCc----CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            78999988742    2235567777777766321          112345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ  143 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  143 (146)
                      |+||+.+...+++.|.++.+  ++|+|+|||+++.+ .+||||++|++|+|++.|+++++..... ....++.
T Consensus       183 s~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~~~eLl~~~~-~y~~l~~  251 (255)
T d2hyda1         183 SALDLESESIIQEALDVLSK--DRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQG-AYEHLYS  251 (255)
T ss_dssp             TTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGT-TTCSEEEEEETTEEEEEECHHHHHHTTS-HHHHHHT
T ss_pred             ccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCc-HHHHHHH
Confidence            99999999999999999853  89999999999977 5799999999999999999999876543 3344443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1e-35  Score=222.01  Aligned_cols=135  Identities=32%  Similarity=0.529  Sum_probs=106.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh------h----hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS------S----FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      |++||+.++....   ...+.+...++..++..      .    .....+.+|||||||||+|||||+++|++|||||||
T Consensus        91 ti~eNi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpt  167 (242)
T d1mv5a_          91 TIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT  167 (242)
T ss_dssp             EHHHHTTSCTTSC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             chhhheecccccc---cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            6889998764321   22344444554443321      1    112345689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL  142 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  142 (146)
                      |+||+.+...+++.|+++.+  |+|+|+|||+++.+. .||||++|++|+|++.|+++++... +++...++
T Consensus       168 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~  235 (242)
T d1mv5a_         168 ASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV  235 (242)
T ss_dssp             CSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHH
Confidence            99999999999999999863  899999999999885 5999999999999999999998754 44545554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-34  Score=217.07  Aligned_cols=134  Identities=22%  Similarity=0.336  Sum_probs=101.3

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCC-------Ch---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT   70 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt   70 (146)
                      ||+||+.++...     .......+++..++       ..   ...++.+.+|||||||||+|||||+++|++|||||||
T Consensus       112 tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPt  186 (281)
T d1r0wa_         112 TIKENIIFGVSY-----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF  186 (281)
T ss_dssp             EHHHHHTTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred             eeeccccccccc-----cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcc
Confidence            688999887432     22233333333322       11   1233456789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954           71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF  141 (146)
Q Consensus        71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~  141 (146)
                      ++||+.+...+++.+..... .|+|+|+|||+++.+ ++||||++|++|+|++.|+++++....+.+...|
T Consensus       187 s~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~  255 (281)
T d1r0wa_         187 GYLDVFTEEQVFESCVCKLM-ANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSKL  255 (281)
T ss_dssp             CSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhh-CCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence            99999999999876444333 489999999999876 6799999999999999999999865444444444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=1.8e-28  Score=177.92  Aligned_cols=112  Identities=29%  Similarity=0.414  Sum_probs=92.9

Q ss_pred             ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954            1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN   80 (146)
Q Consensus         1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~   80 (146)
                      |+.+|+.+....++....++++.++++.+++. + .++++++|||||||||+|||||+++|+++||||||+|||+.++..
T Consensus        86 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~  163 (200)
T d1sgwa_          86 SVEDYLKAVASLYGVKVNKNEIMDALESVEVL-D-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK  163 (200)
T ss_dssp             BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-C-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHH
T ss_pred             CHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc-c-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHH
Confidence            46777776655555444566788888888874 3 356788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954           81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN  118 (146)
Q Consensus        81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~  118 (146)
                      +++.|.++.++.|.+||.++|++    .+||++.+|++
T Consensus       164 i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         164 VLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             HHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             HHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            99999999877677777777775    47999988853

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=3.7e-13  Score=103.98  Aligned_cols=76  Identities=20%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             CcCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954           39 TGAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC  114 (146)
Q Consensus        39 ~~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~  114 (146)
                      +...||||||.++++|..+    ..++++++||||+++||+..+..+.++|.++.. .+.-+|+|||++. +...||+.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~-~~~~ad~~~  406 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNT-MFEKSDALV  406 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHH-HHTTCSEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHH-HHHhcccEE
Confidence            3467899999998877544    467789999999999999999999999998753 4667999999986 456799977


Q ss_pred             EE
Q 046954          115 LL  116 (146)
Q Consensus       115 ~l  116 (146)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.04  E-value=1.9e-11  Score=84.18  Aligned_cols=82  Identities=11%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954           41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE  120 (146)
Q Consensus        41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~  120 (146)
                      .++|+|++++.++++++..+|+++++|||...  ......+.+.+.++.++.+.++|+++|+.. ...+++++..+.+|+
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~i~~~~~~~  156 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKEIRRLPGAV  156 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHHHHTCTTCE
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHH-HHHhhceEEEEeCCE
Confidence            46799999999999999999999999998443  334566667777766656899999999965 456789999999999


Q ss_pred             EEEee
Q 046954          121 IVEVL  125 (146)
Q Consensus       121 i~~~g  125 (146)
                      ++.-+
T Consensus       157 i~~v~  161 (178)
T d1ye8a1         157 LIELT  161 (178)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            97643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=5.6e-10  Score=82.96  Aligned_cols=77  Identities=25%  Similarity=0.329  Sum_probs=64.9

Q ss_pred             cCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954           40 GAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL  115 (146)
Q Consensus        40 ~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~  115 (146)
                      ...+|+|+|+...++..+    ...|.++++|||-++|+|...+.+.+.|++..+  +.-||++||.+..+ ..+|+++.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~-~~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVM-EAADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGG-GGCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-HhcccEEE
Confidence            568999999998777654    467789999999999999999999999999863  68999999999877 46899865


Q ss_pred             --EECC
Q 046954          116 --LVNG  119 (146)
Q Consensus       116 --l~~G  119 (146)
                        +++|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence              5555

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.05  E-value=0.0021  Score=45.33  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954           47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ  107 (146)
Q Consensus        47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~  107 (146)
                      |-+++.-..--+.+..++|+||+..|=++.....+...+.+.-.+.+..++++||..+...
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            3444444444456777999999999999998888766555533345899999999976543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0043  Score=43.94  Aligned_cols=59  Identities=15%  Similarity=0.101  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHH
Q 046954           47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQ  105 (146)
Q Consensus        47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~  105 (146)
                      |-+++.-+.--+.+..++|+||+..|=++.....+... +..+..+.+..++++||..+.
T Consensus       107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l  166 (234)
T d1wb9a2         107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL  166 (234)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence            34444333334666779999999999999999888654 556755546789999998654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.26  Score=34.12  Aligned_cols=49  Identities=14%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             HHHHhcCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954           54 ARTLANEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS  102 (146)
Q Consensus        54 a~al~~~p~llllDEPt~-----~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~  102 (146)
                      ...-..+|+++++|--++     --|......+...|..+++..|+++|++.|-
T Consensus       126 ~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         126 LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            344567999999995432     1266667788888888888889999999994

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=89.54  E-value=0.81  Score=31.58  Aligned_cols=61  Identities=20%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             HhcCCCEEEeeCCCCCCC--------HHHHHHHHHHHHHHHHhcCCeEEEEecCHH----------------------HH
Q 046954           57 LANEPEVLLLDEPTSALD--------PISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------------------QI  106 (146)
Q Consensus        57 l~~~p~llllDEPt~~LD--------~~~~~~~~~~l~~l~~~~g~tvi~itH~~~----------------------~~  106 (146)
                      -..+|+++++|=. .-++        ......+...|++++++.+++|++++|--.                      .+
T Consensus       144 ~~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i  222 (277)
T d1cr2a_         144 SGLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGAL  222 (277)
T ss_dssp             HTTCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHH
T ss_pred             hccCcceEEEccc-ccccccccccchhHHHHHHHHHHHHHhhhccccceeecccccccccccccccccchhhhcccccch
Confidence            3468999999932 1221        133455677788898889999999998421                      23


Q ss_pred             HhhcCeEEEEEC
Q 046954          107 QRIADVVCLLVN  118 (146)
Q Consensus       107 ~~~~d~v~~l~~  118 (146)
                      .+.||-++.|..
T Consensus       223 ~~~ad~vl~l~r  234 (277)
T d1cr2a_         223 RQLSDTIIALER  234 (277)
T ss_dssp             HHHCSEEEEEEC
T ss_pred             hhhCcEEEEEEe
Confidence            557999999964

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.67  E-value=0.27  Score=32.26  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             HHHHHHHhc--CCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEEC
Q 046954           51 VALARTLAN--EPEVLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVN  118 (146)
Q Consensus        51 v~ia~al~~--~p~llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~  118 (146)
                      ...|+..+.  +.+++||||-..++  ..-....+.++|+..  ..+.-+|++-++ +..+...||.|--|+.
T Consensus        83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~r--p~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            444554433  46899999988754  455677888888762  348899999997 4568889999987753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=83.22  E-value=0.9  Score=30.52  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             hcCCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH----------HHHHhhcCeEEEEEC
Q 046954           58 ANEPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLVN  118 (146)
Q Consensus        58 ~~~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~----------~~~~~~~d~v~~l~~  118 (146)
                      -.+|++++.|--   +.+.+......+...+.+++++.+.+++++.|--          ..+..++|-|+.|+.
T Consensus       114 ~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         114 DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             hcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence            458999999954   3445677767777777777777899999998842          234567898888753