Citrus Sinensis ID: 046958
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | 2.2.26 [Sep-21-2011] | |||||||
| Q54VT8 | 539 | Probable glycerol kinase | yes | no | 0.767 | 0.593 | 0.483 | 1e-82 | |
| O69664 | 517 | Glycerol kinase OS=Mycoba | yes | no | 0.786 | 0.634 | 0.467 | 6e-80 | |
| A5U920 | 517 | Glycerol kinase OS=Mycoba | yes | no | 0.786 | 0.634 | 0.467 | 6e-80 | |
| Q9CB81 | 508 | Glycerol kinase OS=Mycoba | yes | no | 0.784 | 0.643 | 0.466 | 6e-79 | |
| C5C1C4 | 505 | Glycerol kinase OS=Beuten | yes | no | 0.779 | 0.643 | 0.458 | 2e-77 | |
| B8GC51 | 498 | Glycerol kinase OS=Chloro | yes | no | 0.757 | 0.634 | 0.482 | 4e-77 | |
| Q9X1E4 | 496 | Glycerol kinase 2 OS=Ther | yes | no | 0.764 | 0.643 | 0.472 | 8e-77 | |
| Q63060 | 524 | Glycerol kinase OS=Rattus | yes | no | 0.647 | 0.515 | 0.496 | 1e-76 | |
| B9LD34 | 498 | Glycerol kinase OS=Chloro | yes | no | 0.760 | 0.636 | 0.481 | 2e-76 | |
| Q14409 | 553 | Putative glycerol kinase | yes | no | 0.645 | 0.486 | 0.501 | 2e-76 |
| >sp|Q54VT8|GLPK_DICDI Probable glycerol kinase OS=Dictyostelium discoideum GN=gk PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/360 (48%), Positives = 233/360 (64%), Gaps = 40/360 (11%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
LM TID+WL+W+LTGG H+TDV+NASRTMLMNLKTL WDK + L +P EI P I
Sbjct: 194 LMGTIDSWLVWNLTGG---KCHITDVTNASRTMLMNLKTLSWDKELCDFLEVPIEILPNI 250
Query: 138 VSNSEIIGKIGKG--------CPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAF 188
S+SEI G + G P+ GIPI+G LG+Q AAM+GQ C +KG+AK+TYGTG F
Sbjct: 251 HSSSEIYGHVTMGDDEQQQQQHPLHGIPIAGVLGDQQAAMVGQMCFEKGQAKNTYGTGCF 310
Query: 189 IRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASE 234
+ NTG ++V S++GLL+T+ ++ G +P YALE D++GI ++ E
Sbjct: 311 LLYNTGNDIVHSRNGLLTTVCYQFGKDSPPIYALEGGVAVAGSGVRWLIDNMGIAESSQE 370
Query: 235 IEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLV 294
IE+LA V TGG+YFV AF+GL AP+WRDDAR V +G+T T++ H AR+VLES C
Sbjct: 371 IEDLAKSVQDTGGMYFVPAFSGLFAPYWRDDARGVMVGLTHHTNRCHIARSVLESTCLQT 430
Query: 295 KDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTA 354
+VLD+ QKD+ K V LRVDGG NNLL+QIQ+DLLG PV++P +E+T
Sbjct: 431 FEVLDAMQKDSGNKLV--------ELRVDGGMAKNNLLLQIQSDLLGLPVVKPISLETTC 482
Query: 355 LGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
GAAFAAG+A GV+KE F K F P L+E + +K + +A+ ++ + D
Sbjct: 483 FGAAFAAGIATGVWKETMQF------KIGGKFTPQLDENHKTQKLKEWKKAISKSLDWID 536
|
Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 0 |
| >sp|O69664|GLPK_MYCTU Glycerol kinase OS=Mycobacterium tuberculosis GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 226/357 (63%), Gaps = 29/357 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T DTW++W+LTGG G +HVTDV+NASRTMLM+L+TLDWD L IP + P+I
Sbjct: 172 LFGTPDTWVLWNLTGGPRGGVHVTDVTNASRTMLMDLETLDWDDELLSLFSIPRAMLPEI 231
Query: 138 VSN--SEIIGKIGKGCPITG-IPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
S+ SE G P+ G +PI+G LG+QHAAM+GQ C GEAK+TYGTG F+ LNT
Sbjct: 232 ASSAPSEPYGVTLATGPVGGEVPITGVLGDQHAAMVGQVCLAPGEAKNTYGTGNFLLLNT 291
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE +V+S +GLL+T+ ++ G P YALE D LGIIS A++ E LA
Sbjct: 292 GETIVRSNNGLLTTVCYQFGNAKPV-YALEGSIAVTGSAVQWLRDQLGIISGAAQSEALA 350
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V GG+YFV AF+GL AP+WR DAR +G++RF + AH ARA LE++C+ +DV+D
Sbjct: 351 RQVPDNGGMYFVPAFSGLFAPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVD 410
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAF 359
+ + D+ GV VL+VDGG T N+L MQIQAD+LG V+RP E+TALG A+
Sbjct: 411 AMEADS---GVRLQ-----VLKVDGGITGNDLCMQIQADVLGVDVVRPVVAETTALGVAY 462
Query: 360 AAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLS 416
AAGLA+G + ++ R T P +++ R +AV+RT + D+S
Sbjct: 463 AAGLAVGFWAAPSDLRANWREDKRWT--PTWDDDERAAGYAGWRKAVQRTLDWVDVS 517
|
Key enzyme in the regulation of glycerol uptake and metabolism. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|A5U920|GLPK_MYCTA Glycerol kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 226/357 (63%), Gaps = 29/357 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T DTW++W+LTGG G +HVTDV+NASRTMLM+L+TLDWD L IP + P+I
Sbjct: 172 LFGTPDTWVLWNLTGGPRGGVHVTDVTNASRTMLMDLETLDWDDELLSLFSIPRAMLPEI 231
Query: 138 VSN--SEIIGKIGKGCPITG-IPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
S+ SE G P+ G +PI+G LG+QHAAM+GQ C GEAK+TYGTG F+ LNT
Sbjct: 232 ASSAPSEPYGVTLATGPVGGEVPITGVLGDQHAAMVGQVCLAPGEAKNTYGTGNFLLLNT 291
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE +V+S +GLL+T+ ++ G P YALE D LGIIS A++ E LA
Sbjct: 292 GETIVRSNNGLLTTVCYQFGNAKPV-YALEGSIAVTGSAVQWLRDQLGIISGAAQSEALA 350
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V GG+YFV AF+GL AP+WR DAR +G++RF + AH ARA LE++C+ +DV+D
Sbjct: 351 RQVPDNGGMYFVPAFSGLFAPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVD 410
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAF 359
+ + D+ GV VL+VDGG T N+L MQIQAD+LG V+RP E+TALG A+
Sbjct: 411 AMEADS---GVRLQ-----VLKVDGGITGNDLCMQIQADVLGVDVVRPVVAETTALGVAY 462
Query: 360 AAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLS 416
AAGLA+G + ++ R T P +++ R +AV+RT + D+S
Sbjct: 463 AAGLAVGFWAAPSDLRANWREDKRWT--PTWDDDERAAGYAGWRKAVQRTLDWVDVS 517
|
Key enzyme in the regulation of glycerol uptake and metabolism. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q9CB81|GLPK_MYCLE Glycerol kinase OS=Mycobacterium leprae (strain TN) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 226/358 (63%), Gaps = 31/358 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T DTWL+W+LTGG G +HVTDV+NASRTMLM+L+ LDWD L IP + P I
Sbjct: 163 LFGTPDTWLLWNLTGGPRGGVHVTDVTNASRTMLMDLEKLDWDDELLSFFSIPRAMLPAI 222
Query: 138 VSNSEI--IGKIGKGCPITG-IPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
S+S + G P+ G +PI+G LG+QHAAM+GQ C GEAK+TYGTG F+ LNT
Sbjct: 223 ASSSPLQPYGVTLADGPVGGEVPITGVLGDQHAAMVGQVCLDAGEAKNTYGTGNFLLLNT 282
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE +V+S +GLL+T+ ++ G P YALE D LGIIS A++ E LA
Sbjct: 283 GEAIVRSGNGLLTTVCYQFGDAKPV-YALEGSIAVTGSAVQWLRDQLGIISGAAQSESLA 341
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V GG+YFV AF+GL +P+WR DAR +G++RF + AH ARA LE++C+ +DV+D
Sbjct: 342 RQVVDNGGVYFVPAFSGLFSPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVD 401
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAF 359
+ A + GV D VL+VDGG T N+L MQIQAD+LG V+R E+TALG+A+
Sbjct: 402 AM---AADSGVRLD-----VLKVDGGITSNDLCMQIQADVLGVDVVRSVVAETTALGSAY 453
Query: 360 AAGLAIGVFK-EEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLS 416
AAGLA+G + ++ A+ + K T P E+ R +AV+RT + D+S
Sbjct: 454 AAGLAVGFWAGPSDLRANWQEDKRWT---PTWGEDQRAAAYAGWRKAVQRTLDWVDVS 508
|
Key enzyme in the regulation of glycerol uptake and metabolism. Mycobacterium leprae (taxid: 1769) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|C5C1C4|GLPK_BEUC1 Glycerol kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/353 (45%), Positives = 223/353 (63%), Gaps = 28/353 (7%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L DTW++W++TGGVNG +HVTDV+NASRTMLM+L TL W+ +GIP + P+I
Sbjct: 160 LFGNTDTWVLWNMTGGVNGGVHVTDVTNASRTMLMDLDTLSWNPDIAADMGIPVSMLPEI 219
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
S+SE+ GK + + G+PI+G LG+Q AA GQAC + G AK+TYGTG F+ +NTG E
Sbjct: 220 RSSSEVYGKDREEGLLAGVPIAGILGDQQAATFGQACFEIGMAKNTYGTGNFMLMNTGTE 279
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V S++GLL+T+ +K+G + P YALE D+L +IS A EIE LAL V
Sbjct: 280 QVASENGLLTTVCYKIGDQ-PQVYALEGSIAVTGSLVQWLRDNLKVISTAPEIENLALTV 338
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
GG YFV AF+GL AP+WR DAR +G+TR+ S H ARA LE+ F +VLD+ +
Sbjct: 339 EDNGGAYFVPAFSGLFAPYWRADARGALVGLTRYVSLGHIARAALEATAFQSAEVLDAMK 398
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362
D+ GV D L+VDGG N +LMQ QAD+LG V+RP E+TALGAA+AAG
Sbjct: 399 ADS---GV--DLTE---LKVDGGMVANEVLMQFQADILGVDVVRPKVAETTALGAAYAAG 450
Query: 363 LAIGVFK-EEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
+A+G + E+++ + K T P ++ R + + +AV +TF+ D
Sbjct: 451 IAVGFWNGEQDVIDNWAEDKRWT---PQMDRGDRDRLYRNWKKAVTKTFDWVD 500
|
Key enzyme in the regulation of glycerol uptake and metabolism. Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) (taxid: 471853) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|B8GC51|GLPK_CHLAD Glycerol kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 167/346 (48%), Positives = 231/346 (66%), Gaps = 30/346 (8%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNS 141
IDT+L W LTGG NG +HVTDV+NASRTMLMNL+TLDWD L +GIP ++ PKIV +S
Sbjct: 164 IDTFLTWWLTGGPNGGVHVTDVTNASRTMLMNLETLDWDDEILSVMGIPRQMLPKIVPSS 223
Query: 142 EIIG-KIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
+ G +G+ + G+P++G LG+Q AAM+GQ C GEAK+TYGTG+F+ LNTG ++V
Sbjct: 224 MVYGTAVGE---LAGVPVAGILGDQQAAMVGQTCFDVGEAKNTYGTGSFMLLNTGTKIVP 280
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
SK GLL+T+ +K G + P YALE D+LG+I+ ++E+E LA V
Sbjct: 281 SKSGLLTTVCYKFGDQ-PAVYALEGSIAITGALVQWLRDNLGLITTSAEVEALANLVEDN 339
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
GGIYFV AF+GL AP+WR DAR V +G+TR+ +K H ARAVLE+ + ++VLD+ ++D+
Sbjct: 340 GGIYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHLARAVLEATAYQTREVLDAMEQDS 399
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
GV A L+VDGG NN LMQ QAD+LG PV+RP E+T+LGAA+AAGLA+
Sbjct: 400 ---GVKLTA-----LKVDGGMVYNNTLMQFQADILGVPVIRPKVAETTSLGAAYAAGLAV 451
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
G + + ++ T+ P ++E R++ +AV RTF+
Sbjct: 452 GFWSNTDEMRAN--WGVDHTWTPQMDEATRERLYRGWKKAVTRTFD 495
|
Key enzyme in the regulation of glycerol uptake and metabolism. Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q9X1E4|GLPK2_THEMA Glycerol kinase 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=glpK2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 217/349 (62%), Gaps = 30/349 (8%)
Query: 77 TLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPK 136
L T+DTWLIW+LTGG +HVTD SNASRTM+ N+ LDWD LE L IP + P+
Sbjct: 158 VLFGTVDTWLIWNLTGG---RVHVTDYSNASRTMIFNIHKLDWDDEILELLNIPRAMLPQ 214
Query: 137 IVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGE 195
++ +S + G K IPI+G G+Q AA+ GQAC + G K+TYGTG F+ +NTGE
Sbjct: 215 VMPSSHVYGYTAKDIFGVEIPIAGDAGDQQAALFGQACFQPGMLKNTYGTGCFLLMNTGE 274
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALR 241
+ +SK GLL+T+A+ + K YALE D L IISNA+E EELA +
Sbjct: 275 KAFESKSGLLTTIAWGINGK--VYYALEGSIFITGAAVQWLRDGLKIISNAAETEELATK 332
Query: 242 VNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301
V GG++FV AF GL AP+W AR + IGITR T++ H RAVLES+ + +DV++
Sbjct: 333 VPDNGGVFFVPAFVGLGAPYWDMYARGLIIGITRGTTREHIVRAVLESIAYQTRDVVEVM 392
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
+KD+ D K E LRVDGGA VNN LMQ QAD+LG PV RP E+TALGAA+ A
Sbjct: 393 EKDS-------DIKVE-TLRVDGGAVVNNFLMQFQADILGVPVERPVVNETTALGAAYLA 444
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
GLA+G +K++E AS + F+P +N E R++ AV R+
Sbjct: 445 GLAVGYWKDQEEIAS--LWQLDRRFEPSMNSEERERLYSKWKEAVSRSL 491
|
Key enzyme in the regulation of glycerol uptake and metabolism. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q63060|GLPK_RAT Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 199/294 (67%), Gaps = 24/294 (8%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
+R L TID+WLIWSLTGG+NG +H TDV+NASRTML N+ +L+WDK E GIP EI
Sbjct: 171 NRALFGTIDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P + S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NT
Sbjct: 231 PNVRSSSEIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII ++ EIE+LA
Sbjct: 290 GHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+ L AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 KEVGTSYGCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIEST 353
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTSNKILMQLQADILYIPVVKPSMPETT 455
|
Key enzyme in the regulation of glycerol uptake and metabolism (By similarity). Increases the binding of activated glucocorticoid-receptor to nuclei in the presence of ATP. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|B9LD34|GLPK_CHLSY Glycerol kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glpK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 229/345 (66%), Gaps = 28/345 (8%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNS 141
IDT+L W LTGG NG +HVTDV+NASRTMLMNL+TLDWD L +GIP ++ PKIV +S
Sbjct: 164 IDTFLTWWLTGGPNGGVHVTDVTNASRTMLMNLETLDWDDEILGIMGIPRQMLPKIVPSS 223
Query: 142 EIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKS 200
+ G + G+P++G LG+Q AAM+GQ C GEAK+TYGTG+F+ LNTG ++V S
Sbjct: 224 MVYGT--ATGELAGVPVAGILGDQQAAMVGQTCFDVGEAKNTYGTGSFMLLNTGTKLVPS 281
Query: 201 KHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNSTG 246
K GLL+T+ +K G + P YALE D+LG+I++++E+E LA V G
Sbjct: 282 KSGLLTTVCYKFGDQ-PAVYALEGSIAITGALVQWLRDNLGLITSSAEVEALANLVEDNG 340
Query: 247 GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306
GIYFV AF+GL AP+WR DAR V +G+TR+ +K H ARAVLE+ + ++VLD+ ++D+
Sbjct: 341 GIYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHLARAVLEATAYQTREVLDAMEQDS- 399
Query: 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366
GV A L+VDGG NN LMQ QAD+LG PV+RP E+T+LGAA+AAGLA+G
Sbjct: 400 --GVKLTA-----LKVDGGMVYNNTLMQFQADILGVPVIRPKVAETTSLGAAYAAGLAVG 452
Query: 367 VFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
+ + ++ T+ P ++E R++ +AV RTF+
Sbjct: 453 FWSNTDEMRAN--WGVDHTWTPQMDEATRERLYRGWKKAVTRTFD 495
|
Key enzyme in the regulation of glycerol uptake and metabolism. Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
| >sp|Q14409|GLPK3_HUMAN Putative glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=5 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 194/293 (66%), Gaps = 24/293 (8%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R L TID+WLIWSLTGGVNG +H TDV+NASRTML N+ +L+WDK E GIP EI P
Sbjct: 172 RALFGTIDSWLIWSLTGGVNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILP 231
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTG 194
+ S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NTG
Sbjct: 232 HVRSSSEIYGLMKAG-ALEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTG 290
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
+ V S HGLL+T+A+KLG P YALE D+LGII + EIE+LA
Sbjct: 291 HKCVFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAK 350
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD+
Sbjct: 351 EVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDA 410
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIEST 353
+D P L+VDGG T N +LMQ+QAD+L PV++P E+T
Sbjct: 411 MNRDC--------GIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPLMPETT 455
|
Key enzyme in the regulation of glycerol uptake and metabolism. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 3 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| 449436162 | 523 | PREDICTED: glycerol kinase-like [Cucumis | 0.815 | 0.650 | 0.790 | 1e-153 | |
| 225463623 | 522 | PREDICTED: probable glycerol kinase isof | 0.815 | 0.651 | 0.754 | 1e-146 | |
| 147837886 | 522 | hypothetical protein VITISV_037711 [Viti | 0.815 | 0.651 | 0.754 | 1e-146 | |
| 117168061 | 522 | At1g80460 [Arabidopsis thaliana] | 0.815 | 0.651 | 0.714 | 1e-143 | |
| 224134466 | 519 | predicted protein [Populus trichocarpa] | 0.824 | 0.662 | 0.732 | 1e-141 | |
| 255553277 | 521 | glycerol kinase, putative [Ricinus commu | 0.810 | 0.648 | 0.734 | 1e-141 | |
| 297839893 | 522 | At1g80460 [Arabidopsis lyrata subsp. lyr | 0.815 | 0.651 | 0.720 | 1e-138 | |
| 15220142 | 522 | glycerol kinase [Arabidopsis thaliana] g | 0.815 | 0.651 | 0.717 | 1e-137 | |
| 351724137 | 519 | glycerol kinase [Glycine max] gi|4045726 | 0.808 | 0.649 | 0.714 | 1e-136 | |
| 90399127 | 529 | H0821G03.7 [Oryza sativa Indica Group] g | 0.812 | 0.640 | 0.685 | 1e-131 |
| >gi|449436162|ref|XP_004135863.1| PREDICTED: glycerol kinase-like [Cucumis sativus] gi|449509293|ref|XP_004163547.1| PREDICTED: glycerol kinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/354 (79%), Positives = 309/354 (87%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW+LTGGVNG LHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA+I PKI
Sbjct: 170 LFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAQILPKI 229
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSNSE+IGKI +G PITG+PISGCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGEEV
Sbjct: 230 VSNSEVIGKISQGWPITGVPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEV 289
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
V+SKHGLL+TLAFKLGP APTNYALE DSLGIIS+A EIE+LA +V
Sbjct: 290 VQSKHGLLTTLAFKLGPDAPTNYALEGSIAIAGAAVQWLRDSLGIISSAQEIEKLASQVQ 349
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWRDDAR VCIGITRFTSKAH ARAVLESMCF VKDVLDS K
Sbjct: 350 STGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQVKDVLDSMHK 409
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DAVEKG +K+ K EF+LRVDGGATVNNLLMQIQADLLGSPV+RPADIE+TALGAA+AAGL
Sbjct: 410 DAVEKGEVKNEKGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGL 469
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G++ ++EIF S ER K++TTF P+L EE RKKK ES C+AV RTF+LADLSL
Sbjct: 470 AVGIWSKDEIFDSGERVKSATTFYPVLEEELRKKKVESWCKAVSRTFDLADLSL 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463623|ref|XP_002273367.1| PREDICTED: probable glycerol kinase isoform 1 [Vitis vinifera] gi|297743524|emb|CBI36391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/354 (75%), Positives = 305/354 (86%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW++TGG+NG +HVTDVSNASRTMLMNLKTLDWDKPTL+TLGI AEI PKI
Sbjct: 169 LFGTIDTWLIWNMTGGLNGGVHVTDVSNASRTMLMNLKTLDWDKPTLDTLGISAEILPKI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSN+EIIG + KG PI+G+PISGCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGEEV
Sbjct: 229 VSNAEIIGTVAKGWPISGLPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEV 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
++SKHGLL+TLAFKLG +APTNYALE DSLGIIS ASEIEELA +V+
Sbjct: 289 IESKHGLLTTLAFKLGREAPTNYALEGSIAIAGAAVQWLRDSLGIISTASEIEELAAKVD 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
S+GG+YFV AFNGL APWWRDDAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS K
Sbjct: 349 SSGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMHK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DA EKG +K+ K EF+LRVDGGAT+NNLLMQIQADLLG+PV+RPADIE+TALGAA+AAGL
Sbjct: 409 DAGEKGEVKNEKGEFLLRVDGGATINNLLMQIQADLLGNPVVRPADIETTALGAAYAAGL 468
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G++ E+EIF S E+ K +TTF P L+EE R KK ES C+AV RTF+LADLSL
Sbjct: 469 AVGIWTEDEIFDSGEKVKLATTFYPALDEERRNKKVESWCKAVSRTFDLADLSL 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147837886|emb|CAN76048.1| hypothetical protein VITISV_037711 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/354 (75%), Positives = 305/354 (86%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW++TGG+NG +HVTDVSNASRTMLMNLKTLDWDKPTL+TLGI AEI PKI
Sbjct: 169 LFGTIDTWLIWNMTGGLNGGVHVTDVSNASRTMLMNLKTLDWDKPTLDTLGISAEILPKI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSN+EIIG + KG PI G+PISGCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGEEV
Sbjct: 229 VSNAEIIGTVAKGWPIPGLPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEV 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
++SKHGLL+TLAFKLG +APTNYALE DSLGIIS+ASEIEELA +V+
Sbjct: 289 IESKHGLLTTLAFKLGREAPTNYALEGSIAIAGAAVQWLRDSLGIISSASEIEELAAKVD 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
S+GG+YFV AFNGL APWWRDDAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS K
Sbjct: 349 SSGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMHK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DA EKG +K+ K EF+LRVDGGAT+NNLLMQIQADLLG+PV+RPADIE+TALGAA+AAGL
Sbjct: 409 DAGEKGEVKNEKGEFLLRVDGGATINNLLMQIQADLLGNPVVRPADIETTALGAAYAAGL 468
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G++ E+EIF S E+ K +TTF P L+EE R KK ES C+AV RTF+LADLSL
Sbjct: 469 AVGIWTEDEIFDSGEKVKLATTFYPALDEERRNKKVESWCKAVSRTFDLADLSL 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|117168061|gb|ABK32113.1| At1g80460 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/354 (71%), Positives = 292/354 (82%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
+ TIDTWLIW++TGG+NG LHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEI PKI
Sbjct: 169 IFGTIDTWLIWNMTGGINGGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSNSE+IG+I KG PI GI I+GCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGE
Sbjct: 229 VSNSEVIGEICKGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVP 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
+KS HGLL+TLA+KLGP+A TNYALE DSLGII +ASEIE+LA V+
Sbjct: 289 IKSGHGLLTTLAYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVD 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWR+DAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS K
Sbjct: 349 STGGVYFVPAFNGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DA EKG + + K EF+LRVDGGAT NNLLMQIQADL+GSPV+RP DIE+TALGAA+AA L
Sbjct: 409 DAGEKGSLNNGKGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAARL 468
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G +KE +IF S E+ K S F+P + E RKKK S C+AVERTF+LADLS+
Sbjct: 469 AVGFWKEADIFESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134466|ref|XP_002327412.1| predicted protein [Populus trichocarpa] gi|222835966|gb|EEE74387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 269/367 (73%), Positives = 301/367 (82%), Gaps = 23/367 (6%)
Query: 67 ASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLET 126
A EG L T+D+WLIW+LTGGV G LHVTDVSNASRTMLMNLKTL+WDKPTLET
Sbjct: 160 AVKEGIKKKDALFGTVDSWLIWNLTGGVKGGLHVTDVSNASRTMLMNLKTLEWDKPTLET 219
Query: 127 LGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTG 186
L IPAEI PKI+SNSEIIGKI +G P+ G PI+GCLG+QHAAM+GQACKKGEAKSTYGTG
Sbjct: 220 LKIPAEILPKIISNSEIIGKITEGWPLVGFPIAGCLGDQHAAMVGQACKKGEAKSTYGTG 279
Query: 187 AFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNA 232
AFI NTGEEVV S HGLL+TLAFKLG KAP NYALE DSLG+I +A
Sbjct: 280 AFILRNTGEEVVNSTHGLLTTLAFKLGSKAPANYALEGSIAIAGAAVQWLRDSLGVIKSA 339
Query: 233 SEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCF 292
EIEELA +V++TGG+YFV AFNGL APWWRDDAR VCIGITRFTSKAH ARAVLESMCF
Sbjct: 340 GEIEELASQVDTTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCF 399
Query: 293 LVKDVLDSKQKDAV--EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI 350
VKDVLDS KDA E+G EF+LRVDGGATVNNLLMQIQADLLGSPV+RPADI
Sbjct: 400 QVKDVLDSMHKDAAGSEEG-------EFLLRVDGGATVNNLLMQIQADLLGSPVVRPADI 452
Query: 351 ESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
E+TALGAA+AAGLA+GV+ EEEIFAS E++K+ TTF+P LNEE RKKK +S +AVERTF
Sbjct: 453 ETTALGAAYAAGLAVGVWTEEEIFASGEKSKSDTTFRPKLNEELRKKKVDSWFKAVERTF 512
Query: 411 NLADLSL 417
+LADLS+
Sbjct: 513 DLADLSI 519
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553277|ref|XP_002517681.1| glycerol kinase, putative [Ricinus communis] gi|223543313|gb|EEF44845.1| glycerol kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/354 (73%), Positives = 298/354 (84%), Gaps = 16/354 (4%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WLIW+LTGGV G LHVTDVSNASRTMLMN+KTL+WDKPTL TLGIPAEI PKI
Sbjct: 170 LFGTIDSWLIWNLTGGVKGGLHVTDVSNASRTMLMNIKTLEWDKPTLNTLGIPAEILPKI 229
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
+SNSE+IGKI KG P+TGIPI+GCLG+QHAAM+GQ CK+ EAKSTYGTGAFI LNTG+ +
Sbjct: 230 ISNSEVIGKIAKGWPVTGIPIAGCLGDQHAAMVGQGCKRDEAKSTYGTGAFILLNTGDHI 289
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
V SKHGLL+TLA+KLGPKAPTNYALE D L +IS+ASEIEELA +V+
Sbjct: 290 VPSKHGLLTTLAYKLGPKAPTNYALEGSIAIAGAAVQWLRDGLELISSASEIEELAKQVD 349
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWRDDAR VCIGITR+T+K+H ARAVLESMCF VKDVLDS K
Sbjct: 350 STGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKSHIARAVLESMCFQVKDVLDSMHK 409
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
D EK KD K EF+LRVDGGAT+NNLLMQIQADL+G PV+RP+DIE+TALGAA+AAGL
Sbjct: 410 DREEKH--KDTKREFLLRVDGGATINNLLMQIQADLVGHPVVRPSDIETTALGAAYAAGL 467
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G++ E+EIFAS E+ KT T F P L+EE RKKK ES C+AVERTF LADLS+
Sbjct: 468 AVGIWTEKEIFASGEKAKTDTIFCPKLDEELRKKKVESWCKAVERTFGLADLSI 521
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839893|ref|XP_002887828.1| At1g80460 [Arabidopsis lyrata subsp. lyrata] gi|297333669|gb|EFH64087.1| At1g80460 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/354 (72%), Positives = 295/354 (83%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
+ TIDTWLIW++TGGV+G LHVTDV+NASRTMLMNLKTL+WD+ TL+TLGIPAEI PKI
Sbjct: 169 IFGTIDTWLIWNMTGGVDGGLHVTDVTNASRTMLMNLKTLNWDQDTLKTLGIPAEILPKI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSNSE+IG+I KG PI GI I+GCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGE
Sbjct: 229 VSNSEVIGEICKGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVP 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
+KS HGLL+TLA+KLGP+A TNYALE DSLGII +ASEIE+LA V+
Sbjct: 289 IKSGHGLLTTLAYKLGPQAHTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVD 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWR+DAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS K
Sbjct: 349 STGGVYFVPAFNGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DA EKG + + K EF+LRVDGGAT NNLLMQIQADL+GSPV+RP DIE+TALGAA+AAGL
Sbjct: 409 DAGEKGSLDNEKGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGL 468
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G +KE +IF S E+ K S F+P + EE RKKK S C+AVERTF+LADLS+
Sbjct: 469 AVGFWKEADIFESGEKAKNSKVFRPAMEEETRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220142|ref|NP_178161.1| glycerol kinase [Arabidopsis thaliana] gi|6730733|gb|AAF27123.1|AC018849_11 putative glycerol kinase; 69575-71670 [Arabidopsis thaliana] gi|30314022|gb|AAO61418.1| glycerol kinase [Arabidopsis thaliana] gi|222423040|dbj|BAH19502.1| AT1G80460 [Arabidopsis thaliana] gi|332198286|gb|AEE36407.1| glycerol kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/354 (71%), Positives = 293/354 (82%), Gaps = 14/354 (3%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
+ TIDTWLIW++TGG+NG LHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEI PKI
Sbjct: 169 IFGTIDTWLIWNMTGGINGGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSNSE+IG+I KG PI GI I+GCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGE
Sbjct: 229 VSNSEVIGEICKGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVP 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
+KS HGLL+TLA+KLGP+A TNYALE DSLGII +ASEIE+LA V+
Sbjct: 289 IKSGHGLLTTLAYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVD 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWR+DAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS K
Sbjct: 349 STGGVYFVPAFNGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
DA EKG + + K EF+LRVDGGAT NNLLMQIQADL+GSPV+RP DIE+TALGAA+AAGL
Sbjct: 409 DAGEKGSLNNGKGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGL 468
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A+G +KE +IF S E+ K S F+P + E RKKK S C+AVERTF+LADLS+
Sbjct: 469 AVGFWKEADIFESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351724137|ref|NP_001237303.1| glycerol kinase [Glycine max] gi|40457263|gb|AAR86687.1| glycerol kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 253/354 (71%), Positives = 295/354 (83%), Gaps = 17/354 (4%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW+LTGGVNG LHVTDVSNASRTMLMNLKTLDWD TL+TL IPAEI P I
Sbjct: 169 LFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDASTLKTLNIPAEILPNI 228
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
VSN+EIIG++G G PI G+PI+GCLG+QHAAMLGQ+C+KGEAKSTYGTGAFI LNTGE +
Sbjct: 229 VSNAEIIGEVGSGWPIAGVPIAGCLGDQHAAMLGQSCRKGEAKSTYGTGAFILLNTGEGI 288
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVN 243
++SKHGLLST+AFKLGPKAPTNYALE D LGIIS+A+EIEE+AL+V
Sbjct: 289 IQSKHGLLSTIAFKLGPKAPTNYALEGSVAIAGAAVQWLRDGLGIISSAAEIEEMALQVE 348
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
STGG+YFV AFNGL APWWR+DAR VCIGITRFTSK H ARAVLESMCF VKDVLDS K
Sbjct: 349 STGGVYFVPAFNGLFAPWWREDARGVCIGITRFTSKGHIARAVLESMCFQVKDVLDSMHK 408
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
D+ E + K EF+LRVDGGATVNNLLMQIQADL+G PV+RPADIE+TALGAA+AAGL
Sbjct: 409 DSGES---ESQKTEFLLRVDGGATVNNLLMQIQADLVGCPVIRPADIETTALGAAYAAGL 465
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
A G++KE+ IF + E+ K + F+P++ EE RKKK +S C+AV +TF+LADL++
Sbjct: 466 ATGIWKEDFIFNTEEKLKNARVFRPVMTEEVRKKKVDSWCKAVSKTFDLADLAI 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90399127|emb|CAJ86056.1| H0821G03.7 [Oryza sativa Indica Group] gi|90399352|emb|CAH68428.1| H0811D08.16 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/363 (68%), Positives = 286/363 (78%), Gaps = 24/363 (6%)
Query: 78 LMTTIDTWLIWSLTGGVNG---------DLHVTDVSNASRTMLMNLKTLDWDKPTLETLG 128
L TIDTWLIW+LTGG+ G HVTD SNASRTMLMNLK LDWDKPTLETLG
Sbjct: 168 LFGTIDTWLIWNLTGGIGGTDRDGNKVFGHHVTDCSNASRTMLMNLKALDWDKPTLETLG 227
Query: 129 IPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAF 188
IPAEI PKI+SNSE IG + G P+ G+PI+GCLG+QHAAMLGQ C+KGEAKSTYGTGAF
Sbjct: 228 IPAEILPKIISNSERIGVVANGFPLAGVPIAGCLGDQHAAMLGQLCQKGEAKSTYGTGAF 287
Query: 189 IRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASE 234
I LNTGEE +S HGLLST+A+KLGP APTNYALE DSLGIIS A++
Sbjct: 288 ILLNTGEEPTQSSHGLLSTIAYKLGPSAPTNYALEGSIAIAGAAVQWLRDSLGIISTAAD 347
Query: 235 IEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLV 294
IE+LA V +GGIYFV AFNGL APWWRDDAR +CIGITRFT+K H ARAVLESMCF V
Sbjct: 348 IEKLADTVQDSGGIYFVPAFNGLFAPWWRDDARGICIGITRFTNKGHIARAVLESMCFQV 407
Query: 295 KDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTA 354
DVL S KDA E G +K A+ EF+LRVDGGATVNNLLMQIQADLLGSPV+RPADIE+TA
Sbjct: 408 NDVLSSMHKDAGEAGEVKSAEGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTA 467
Query: 355 LGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
LGAA+AAGLA+GV+ +E+IFA + T T F+P L+E R+K+A+S +AV R+F+LAD
Sbjct: 468 LGAAYAAGLAVGVWSKEQIFAGLHKENT-TVFRPKLDEAHRRKRADSWYKAVSRSFDLAD 526
Query: 415 LSL 417
LSL
Sbjct: 527 LSL 529
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| TAIR|locus:2198928 | 522 | NHO1 "nonhost resistance to P. | 0.808 | 0.645 | 0.695 | 1.4e-126 | |
| RGD|70893 | 524 | Gk "glycerol kinase" [Rattus n | 0.774 | 0.616 | 0.446 | 1.3e-70 | |
| UNIPROTKB|Q63060 | 524 | Gk "Glycerol kinase" [Rattus n | 0.774 | 0.616 | 0.446 | 1.3e-70 | |
| UNIPROTKB|E2QSE8 | 554 | E2QSE8 "Uncharacterized protei | 0.774 | 0.583 | 0.448 | 2.6e-70 | |
| UNIPROTKB|E2RNT9 | 524 | GK "Uncharacterized protein" [ | 0.774 | 0.616 | 0.448 | 2.6e-70 | |
| UNIPROTKB|Q14409 | 553 | GK3P "Putative glycerol kinase | 0.769 | 0.580 | 0.446 | 3.3e-70 | |
| ZFIN|ZDB-GENE-080204-72 | 534 | zgc:172295 "zgc:172295" [Danio | 0.781 | 0.610 | 0.438 | 2.4e-69 | |
| UNIPROTKB|Q2NKZ8 | 553 | LOC538702 "Uncharacterized pro | 0.784 | 0.591 | 0.438 | 4.9e-69 | |
| UNIPROTKB|F1NRQ6 | 552 | GK "Uncharacterized protein" [ | 0.731 | 0.552 | 0.449 | 1.7e-68 | |
| UNIPROTKB|Q14410 | 553 | GK2 "Glycerol kinase 2" [Homo | 0.695 | 0.524 | 0.468 | 2.1e-68 |
| TAIR|locus:2198928 NHO1 "nonhost resistance to P. s. phaseolicola 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 244/351 (69%), Positives = 281/351 (80%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TIDTWLIW++TGG+NG LHVTDV+NASRTMLMNLKTL WD+ TL+TLGIPAEI PKIVSN
Sbjct: 172 TIDTWLIWNMTGGINGGLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSN 231
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKS 200
SE+IG+I KG PI GI I+GCLG+QHAAMLGQAC+KGEAKSTYGTGAFI LNTGE +KS
Sbjct: 232 SEVIGEICKGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKS 291
Query: 201 KHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNSTG 246
HGLL+TLA+KLGP+A TNYALE DSLGII +ASEIE+LA V+STG
Sbjct: 292 GHGLLTTLAYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTG 351
Query: 247 GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306
G+YFV AFNGL APWWR+DAR VCIGITRFT+K+H ARAVLESMCF VKDVLDS KDA
Sbjct: 352 GVYFVPAFNGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAG 411
Query: 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXXXXXIG 366
EKG + + K EF+LRVDGGAT NNLLMQIQADL+GSPV+RP DIE+T +G
Sbjct: 412 EKGSLNNGKGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVG 471
Query: 367 VFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
+KE +IF S E+ K S F+P + E RKKK S C+AVERTF+LADLS+
Sbjct: 472 FWKEADIFESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
|
|
| RGD|70893 Gk "glycerol kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 157/352 (44%), Positives = 221/352 (62%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
+R L TID+WLIWSLTGG+NG +H TDV+NASRTML N+ +L+WDK E GIP EI
Sbjct: 171 NRALFGTIDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P + S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NT
Sbjct: 231 PNVRSSSEIYGLMKAGA-LEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII ++ EIE+LA
Sbjct: 290 GHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+ L AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 KEVGTSYGCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAM 461
Query: 360 XXXXX--IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+GV+ E S+ T F+P +N E + + + +AV ++
Sbjct: 462 AAGAAEGVGVWSLEPEDLSAV---TMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| UNIPROTKB|Q63060 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 157/352 (44%), Positives = 221/352 (62%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
+R L TID+WLIWSLTGG+NG +H TDV+NASRTML N+ +L+WDK E GIP EI
Sbjct: 171 NRALFGTIDSWLIWSLTGGINGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFGIPMEIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P + S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NT
Sbjct: 231 PNVRSSSEIYGLMKAGA-LEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII ++ EIE+LA
Sbjct: 290 GHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+ L AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 KEVGTSYGCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAM 461
Query: 360 XXXXX--IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+GV+ E S+ T F+P +N E + + + +AV ++
Sbjct: 462 AAGAAEGVGVWSLEPEDLSAV---TMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| UNIPROTKB|E2QSE8 E2QSE8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 158/352 (44%), Positives = 219/352 (62%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
DR L TID+WLIWSLTGG NG +H TDV+NASRTML N+ +L+WDK E IP +I
Sbjct: 171 DRALFGTIDSWLIWSLTGGANGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P + S+SEI G + G + G+PISGCLG+Q AA++GQ C + GEAK+TYGTG F+ NT
Sbjct: 231 PNVRSSSEIYGLMKAGA-LEGVPISGCLGDQSAALVGQMCFQDGEAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII + EIE+LA
Sbjct: 290 GRKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 KEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAM 461
Query: 360 XXXXX--IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+GV+ E S+ T F+P +N E + + + +AV ++
Sbjct: 462 AAGAAEGVGVWSLEPEDLSAV---TMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| UNIPROTKB|E2RNT9 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 158/352 (44%), Positives = 219/352 (62%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
DR L TID+WLIWSLTGG NG +H TDV+NASRTML N+ +L+WDK E IP +I
Sbjct: 171 DRALFGTIDSWLIWSLTGGANGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFEIPMKIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P + S+SEI G + G + G+PISGCLG+Q AA++GQ C + GEAK+TYGTG F+ NT
Sbjct: 231 PNVRSSSEIYGLMKAGA-LEGVPISGCLGDQSAALVGQMCFQDGEAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII + EIE+LA
Sbjct: 290 GRKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 KEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAM 461
Query: 360 XXXXX--IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+GV+ E S+ T F+P +N E + + + +AV ++
Sbjct: 462 AAGAAEGVGVWSLEPEDLSAV---TMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| UNIPROTKB|Q14409 GK3P "Putative glycerol kinase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 157/352 (44%), Positives = 219/352 (62%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R L TID+WLIWSLTGGVNG +H TDV+NASRTML N+ +L+WDK E GIP EI P
Sbjct: 172 RALFGTIDSWLIWSLTGGVNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILP 231
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKK-GEAKSTYGTGAFIRLNTG 194
+ S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NTG
Sbjct: 232 HVRSSSEIYGLMKAGA-LEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTG 290
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
+ V S HGLL+T+A+KLG P YALE D+LGII + EIE+LA
Sbjct: 291 HKCVFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAK 350
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD+
Sbjct: 351 EVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDA 410
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+D G+ P L+VDGG T N +LMQ+QAD+L PV++P E+T
Sbjct: 411 MNRDC---GI-----PLSHLQVDGGMTSNKILMQLQADILYIPVVKPLMPETTALGAAMA 462
Query: 361 XXXXIGVFKEEEIFASSERTKTSTT---FKPLLNEEFRKKKAESQCRAVERT 409
GV ++++ ++ T F+P +N E + + + +AV ++
Sbjct: 463 AGAAEGV----DVWSLEPEDLSAVTMERFEPQINAEESEIRYSTWKKAVMKS 510
|
|
| ZFIN|ZDB-GENE-080204-72 zgc:172295 "zgc:172295" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 154/351 (43%), Positives = 214/351 (60%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R + T+D+WLIW LTGG NG +H TDV+NASRTML N+ T+DWD IP I P
Sbjct: 178 RAMFGTVDSWLIWCLTGGKNGGVHCTDVTNASRTMLFNIHTMDWDPELCIYFDIPMGILP 237
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTG 194
K+ S+SEI G + G P+TG+PISGCLG+Q AA++GQ C K G+AK+TYGTG F+ N G
Sbjct: 238 KVRSSSEIYGLMKSG-PLTGVPISGCLGDQSAALVGQMCFKDGQAKNTYGTGCFLLKNVG 296
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
+ V S HGLL+T+A+KLG P YALE D+LGII ++E+E+LA
Sbjct: 297 TKPVMSDHGLLTTVAYKLGRDKPACYALEGSVAIAGAVVRWLKDNLGIIQTSTELEKLAA 356
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
V ++ G YFV AF+GL AP+W AR + G+T+FT+++H A A LE++CF +++LD+
Sbjct: 357 DVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNRSHLAFAALEAVCFQTREILDA 416
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+D+ G+ L+VDGG T N LLMQ+QAD+L PV++P+ E+T
Sbjct: 417 MNQDS---GINLSQ-----LQVDGGMTSNRLLMQLQADILCIPVVKPSMPETTALGAAMA 468
Query: 361 XXXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
GV + TS F+P +N E + + +AV+R N
Sbjct: 469 AGAAEGV-SVWSLNPEDLTEVTSEKFEPQINPEESELRYARWKKAVQRAMN 518
|
|
| UNIPROTKB|Q2NKZ8 LOC538702 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 156/356 (43%), Positives = 220/356 (61%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
DR L TID+WLIWSLTGG G +H TDV+NASRTML N+ +L+WDK E +P +I
Sbjct: 171 DRALFGTIDSWLIWSLTGGARGGVHCTDVTNASRTMLFNIHSLEWDKELCEFFKVPMKIL 230
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P I S+SEI G + G + G+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NT
Sbjct: 231 PNIRSSSEIYGLMKAGS-LEGVPISGCLGDQSAALVGQLCFQDGQAKNTYGTGCFLLCNT 289
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S+HGLL+T+A+KLG P YALE D+LGII + EIE+LA
Sbjct: 290 GHKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVVRWLRDNLGIIKTSEEIEKLA 349
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD
Sbjct: 350 NEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILD 409
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P+ E+T
Sbjct: 410 AMNRDC---GI-----PLSHLQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAM 461
Query: 360 XXXXX--IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLA 413
+GV+ E S+ T F+P +N + + + + +AV ++ + A
Sbjct: 462 AAGAAEGVGVWSLEPEDLSAV---TMERFEPQINAKESEIRYSTWKKAVMKSMDWA 514
|
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| UNIPROTKB|F1NRQ6 GK "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 151/336 (44%), Positives = 210/336 (62%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R + TID+WLIW LTGG NG +H TDV+NASRTML N+ +LDWD + IP EI P
Sbjct: 173 RAMFGTIDSWLIWCLTGGKNGGVHCTDVTNASRTMLFNIHSLDWDPELCQFFDIPMEILP 232
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTG 194
K+ S+SEI G + G +TG+PISGCLG+Q AA++GQ C + G+AK+TYGTG F+ NTG
Sbjct: 233 KVRSSSEIYGLMKSGA-LTGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTG 291
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
++ V S HGLL+T+A+KLG P YALE D+LGI+ + E+E+LA
Sbjct: 292 QKSVFSDHGLLTTIAYKLGRDKPVCYALEGSVAIAGAVVRWLRDNLGIVKTSQEVEKLAA 351
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE++CF +++LD+
Sbjct: 352 EAGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKNHIAFAALEAVCFQTREILDA 411
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
KD G+ P L+VDGG T N +LMQ+Q+D+L PV++P+ E+T
Sbjct: 412 MNKDC---GI-----PLSQLQVDGGMTNNKVLMQLQSDILCIPVVKPSMPETTALGAAMA 463
Query: 361 XXXXIGVFKEEEIFASSERTKTSTT---FKPLLNEE 393
GV I++ + T+ T F+P +N E
Sbjct: 464 AGAAEGV----GIWSLNPGDLTAVTCERFEPQINPE 495
|
|
| UNIPROTKB|Q14410 GK2 "Glycerol kinase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 149/318 (46%), Positives = 203/318 (63%)
Query: 65 QTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTL 124
Q A EG R L TID+WLIWSLTGGVNG +H TDV+NASRTML N+ +L+WDK
Sbjct: 165 QKAVEEG----RALFGTIDSWLIWSLTGGVNGGVHCTDVTNASRTMLFNIHSLEWDKELC 220
Query: 125 ETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTY 183
+ IP ++ P + S+SEI G I G + G+PISGCLG+Q AA++GQ C ++G+AK+TY
Sbjct: 221 DFFEIPMDLLPNVFSSSEIYGLIKTGA-LEGVPISGCLGDQCAALVGQMCFQEGQAKNTY 279
Query: 184 GTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGII 229
GTG F+ NTG + V S+HGLL+T+A+KLG + P YALE D+LGII
Sbjct: 280 GTGCFLLCNTGRKCVFSEHGLLTTVAYKLGREKPAYYALEGSVAIAGAVIRWLRDNLGII 339
Query: 230 SNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLES 289
+ +IE LA V ++ G YFV AF+GL AP+W AR + G+T+FT+K H A A LE+
Sbjct: 340 ETSGDIERLAKEVGTSYGCYFVPAFSGLYAPYWEPSARGILCGLTQFTNKCHIAFAALEA 399
Query: 290 MCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD 349
+CF +++L++ +D G+ P L+VDGG T N +LMQ+QAD+L PV++P
Sbjct: 400 VCFQTREILEAMNRDC---GI-----PLRHLQVDGGMTNNKVLMQLQADILHIPVIKPFM 451
Query: 350 IESTXXXXXXXXXXXIGV 367
E+T GV
Sbjct: 452 PETTALGAAMAAGAAEGV 469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00003297001 | SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (522 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00018147001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (616 aa) | • | • | • | • | • | 0.995 | ||||
| GSVIVG00007751001 | SubName- Full=Chromosome undetermined scaffold_200, whole genome shotgun sequence; (518 aa) | • | • | 0.931 | |||||||
| GSVIVG00036209001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (376 aa) | • | 0.915 | ||||||||
| GSVIVG00015673001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (332 aa) | • | • | 0.908 | |||||||
| GSVIVG00028143001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (523 aa) | • | 0.899 | ||||||||
| GSVIVG00026883001 | SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (469 aa) | • | 0.899 | ||||||||
| GSVIVG00021481001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (499 aa) | • | 0.899 | ||||||||
| GSVIVG00018448001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (487 aa) | • | 0.899 | ||||||||
| GSVIVG00000431001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa) | • | 0.792 | ||||||||
| GSVIVG00035815001 | SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (262 aa) | • | • | • | 0.783 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| PLN02295 | 512 | PLN02295, PLN02295, glycerol kinase | 0.0 | |
| cd07796 | 503 | cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel | 0.0 | |
| TIGR01311 | 493 | TIGR01311, glycerol_kin, glycerol kinase | 1e-160 | |
| PRK00047 | 498 | PRK00047, glpK, glycerol kinase; Provisional | 1e-147 | |
| cd07769 | 484 | cd07769, FGGY_GK, Glycerol kinases; a subfamily of | 1e-146 | |
| cd07786 | 486 | cd07786, FGGY_EcGK_like, Escherichia coli glycerol | 1e-143 | |
| cd07792 | 504 | cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin | 1e-141 | |
| PTZ00294 | 504 | PTZ00294, PTZ00294, glycerol kinase-like protein; | 1e-135 | |
| COG0554 | 499 | COG0554, GlpK, Glycerol kinase [Energy production | 1e-134 | |
| cd07789 | 495 | cd07789, FGGY_CsGK_like, Cellulomonas sp | 1e-132 | |
| cd07795 | 496 | cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi | 1e-123 | |
| cd10427 | 487 | cd10427, FGGY_GK_1, Uncharacterized subgroup; belo | 4e-99 | |
| cd07791 | 484 | cd07791, FGGY_GK2_bacteria, bacterial glycerol kin | 3e-74 | |
| cd07793 | 504 | cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas | 2e-72 | |
| cd00366 | 435 | cd00366, FGGY, FGGY family of carbohydrate kinases | 8e-50 | |
| cd07794 | 470 | cd07794, FGGY_GK_like_proteobact, Proteobacterial | 8e-39 | |
| COG1070 | 502 | COG1070, XylB, Sugar (pentulose and hexulose) kina | 9e-37 | |
| cd07803 | 482 | cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup | 5e-34 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 4e-33 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 3e-26 | |
| pfam02782 | 193 | pfam02782, FGGY_C, FGGY family of carbohydrate kin | 5e-26 | |
| cd07805 | 514 | cd07805, FGGY_XK_like_2, uncharacterized xylulose | 5e-25 | |
| cd07802 | 447 | cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil | 3e-22 | |
| cd07770 | 440 | cd07770, FGGY_GntK, Gluconate kinases; a subfamily | 8e-22 | |
| pfam00370 | 245 | pfam00370, FGGY_N, FGGY family of carbohydrate kin | 9e-22 | |
| TIGR01314 | 505 | TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | 2e-19 | |
| cd07774 | 430 | cd07774, FGGY_1, uncharacterized subgroup; belongs | 2e-19 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 3e-19 | |
| cd07779 | 488 | cd07779, FGGY_ygcE_like, uncharacterized ygcE-like | 4e-18 | |
| cd07811 | 493 | cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup | 8e-16 | |
| cd07773 | 448 | cd07773, FGGY_FK, L-fuculose kinases; a subfamily | 8e-14 | |
| cd07783 | 484 | cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase | 2e-12 | |
| TIGR02628 | 465 | TIGR02628, fuculo_kin_coli, L-fuculokinase | 5e-11 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 4e-10 | |
| cd07768 | 465 | cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd | 1e-09 | |
| COG1069 | 544 | COG1069, AraB, Ribulose kinase [Energy production | 3e-09 | |
| PRK10331 | 470 | PRK10331, PRK10331, L-fuculokinase; Provisional | 5e-09 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 3e-07 | |
| cd07771 | 440 | cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam | 4e-07 | |
| cd07782 | 536 | cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu | 8e-07 | |
| PRK15027 | 484 | PRK15027, PRK15027, xylulokinase; Provisional | 1e-06 | |
| cd07777 | 448 | cd07777, FGGY_SHK_like, sedoheptulokinase-like pro | 4e-06 | |
| cd07781 | 498 | cd07781, FGGY_RBK, Ribulokinases; belongs to the F | 5e-06 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 9e-06 | |
| PRK10939 | 520 | PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P | 1e-05 | |
| PRK10331 | 470 | PRK10331, PRK10331, L-fuculokinase; Provisional | 4e-05 | |
| TIGR01315 | 541 | TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki | 6e-05 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 1e-04 | |
| TIGR01234 | 536 | TIGR01234, L-ribulokinase, L-ribulokinase | 2e-04 | |
| cd07776 | 480 | cd07776, FGGY_D-XK_euk, eukaryotic D-xylulose kina | 9e-04 | |
| cd07771 | 440 | cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam | 0.003 | |
| TIGR02627 | 454 | TIGR02627, rhamnulo_kin, rhamnulokinase | 0.004 |
| >gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase | Back alignment and domain information |
|---|
Score = 583 bits (1505), Expect = 0.0
Identities = 252/351 (71%), Positives = 291/351 (82%), Gaps = 18/351 (5%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TID+WLIW+LTGG +G +HVTDV+NASRTMLMNLKTLDWDKPTLE LGIPAEI PKIVSN
Sbjct: 166 TIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSN 225
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKS 200
SE+IG I KG P+ G+PI+GCLG+QHAAMLGQ C+ GEAKSTYGTG FI LNTGEEVV S
Sbjct: 226 SEVIGTIAKGWPLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPS 285
Query: 201 KHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNSTG 246
KHGLL+T+A+KLGP APTNYALE D+LGII +ASEIE LA V+ TG
Sbjct: 286 KHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTG 345
Query: 247 GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306
G+YFV AF+GL AP WRDDAR VC+GITRFT+KAH ARAVLESMCF VKDVLD+ +KDA
Sbjct: 346 GVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDA- 404
Query: 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366
G K K F+LRVDGGAT NNLLMQIQADLLGSPV+RPADIE+TALGAA+AAGLA+G
Sbjct: 405 --GEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVG 462
Query: 367 VFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADLSL 417
++ EEEIFA SE+ K +TTF+P L+EE R K+ S C+AVER+F+LADLS+
Sbjct: 463 LWTEEEIFA-SEKWKNTTTFRPKLDEEERAKRYASWCKAVERSFDLADLSI 512
|
Length = 512 |
| >gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 523 bits (1348), Expect = 0.0
Identities = 222/342 (64%), Positives = 266/342 (77%), Gaps = 17/342 (4%)
Query: 78 LMTTIDTWLIWSLTGGVNGD--LHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
L TIDTWLIW+LTGG+NG+ +HVTD +NA+RTMLM+LKTL W +PTL+ LGIP I P
Sbjct: 163 LFGTIDTWLIWNLTGGINGEEGVHVTDCTNAARTMLMDLKTLQWHEPTLKDLGIPRSILP 222
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGE 195
KI+SN E+IG+I +G P GI ++GCLG+QHAAMLGQ C+KGEAKSTYGTG FI LNTGE
Sbjct: 223 KIISNVEVIGEISEGWPFAGIQLAGCLGDQHAAMLGQQCRKGEAKSTYGTGCFILLNTGE 282
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALR 241
+++ S HGLL+T+A+KLGP APTNYALE DSLGII +ASEIE LA
Sbjct: 283 QIIPSNHGLLTTIAYKLGPDAPTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIESLAKT 342
Query: 242 VNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301
VN+TGG+YFV AFNGL APWWRDDAR VCIGITR+T+KAH ARAVLESMCF VK+VL S
Sbjct: 343 VNNTGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHIARAVLESMCFQVKEVLTSM 402
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
+ DA EF+LRVDGGATVNNLLMQIQADL+GSPV+RP DIE+TALGAA+AA
Sbjct: 403 KADAGNIEANT-VGGEFLLRVDGGATVNNLLMQIQADLMGSPVVRPVDIETTALGAAYAA 461
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQC 403
GLA+GV+ EE+IF S + + T F P + ++ RKK+ S C
Sbjct: 462 GLAVGVWTEEQIFESGAKQEAPTVFHPQITDDERKKRCLSWC 503
|
This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503 |
| >gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase | Back alignment and domain information |
|---|
Score = 459 bits (1183), Expect = e-160
Identities = 181/350 (51%), Positives = 229/350 (65%), Gaps = 31/350 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW+LTGG +HVTDV+NASRTML N+ TLDWD LE GIP EI P++
Sbjct: 158 LFGTIDTWLIWNLTGG---KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEV 214
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
S+SE+ G G IPI+G LG+Q AA+ GQAC K G+AK+TYGTG F+ +NTGE+
Sbjct: 215 RSSSEVYGYTDPGLLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEK 274
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V SKHGLL+T+A++LG K P YALE D+L +I +A+E E LA V
Sbjct: 275 PVISKHGLLTTVAYQLGGKKP-VYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSV 333
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
GG+YFV AF GL AP+W DAR G+TR T+KAH ARA LE++ F +DVL++ +
Sbjct: 334 EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAME 393
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362
KDA + LRVDGG T NNLLMQ QAD+LG PV+RP E+TALGAA+AAG
Sbjct: 394 KDAGVEIT--------KLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAG 445
Query: 363 LAIGVFK-EEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
LA+G +K EEI A K TF+P ++EE R+ + AV+R+
Sbjct: 446 LAVGYWKSLEEIEALWRVEK---TFEPEMDEEEREARYAGWKEAVKRSLG 492
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493 |
| >gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional | Back alignment and domain information |
|---|
Score = 426 bits (1098), Expect = e-147
Identities = 164/348 (47%), Positives = 217/348 (62%), Gaps = 33/348 (9%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TIDTWL+W LTGG +HVTD +NASRTML N+ TLDWD LE L IP + P++ +
Sbjct: 165 TIDTWLVWKLTGG---KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPS 221
Query: 141 SEIIGKIGKGCPITG-IPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVV 198
SE+ GK G +PI+G G+Q AA+ GQ C + G AK+TYGTG F+ +NTGE+ V
Sbjct: 222 SEVYGKTNPYGFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAV 281
Query: 199 KSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNS 244
KS++GLL+T+A+ + K YALE D L IIS+AS+ E LA +V
Sbjct: 282 KSENGLLTTIAWGIDGKV--VYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVED 339
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
G+Y V AF GL AP+W DAR G+TR T+K H RA LES+ + +DVLD+ Q D
Sbjct: 340 NDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQAD 399
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLA 364
+ + +K LRVDGGA NN LMQ QAD+LG PV RP E+TALGAA+ AGLA
Sbjct: 400 SGIR--LK------ELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLA 451
Query: 365 IGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
+G +K+ +E+ E+ K F+P ++EE R+K +AV+RT
Sbjct: 452 VGFWKDLDEL---KEQWKIDRRFEPQMDEEEREKLYAGWKKAVKRTLA 496
|
Length = 498 |
| >gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 425 bits (1094), Expect = e-146
Identities = 174/337 (51%), Positives = 222/337 (65%), Gaps = 30/337 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW+LTGG HVTDV+NASRTMLMNL TL WD+ LE GIP+E P+I
Sbjct: 157 LFGTIDTWLIWNLTGGKV---HVTDVTNASRTMLMNLHTLQWDEELLELFGIPSECLPEI 213
Query: 138 VSNSEIIGKIGKG-CPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGE 195
S+SE+ G +G GIPI+GCLG+Q AA+ GQ C + G+AK TYGTG F+ +NTGE
Sbjct: 214 RSSSEVYGYTNEGGLLGEGIPIAGCLGDQQAALFGQGCFEAGDAKCTYGTGCFLLMNTGE 273
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALR 241
+ V S+HGLL+T+A+KLGP YALE D+L IIS+ASE+EELA
Sbjct: 274 KPVISEHGLLTTIAYKLGP-GKPVYALEGSIAVAGSAVQWLRDNLKIISSASEVEELAAS 332
Query: 242 VNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301
V TGG+YFV AF+GL AP+W DAR +G+TR T++AH RA LE++ F +DVLD+
Sbjct: 333 VEDTGGVYFVPAFSGLFAPYWDPDARGTILGLTRGTTRAHIVRAALEAIAFQTRDVLDAM 392
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
+KD+ VLRVDGG T NNLLMQ QAD+LG PV RP E+TALGAA+ A
Sbjct: 393 EKDS--------GIKLSVLRVDGGLTKNNLLMQFQADILGVPVERPETAETTALGAAYLA 444
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKK 398
GLA+G + + + K+ F P ++ R+K+
Sbjct: 445 GLAVGFWSDLDELQ--ALRKSDRVFSPTMDASEREKR 479
|
This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484 |
| >gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-143
Identities = 159/342 (46%), Positives = 215/342 (62%), Gaps = 30/342 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TID+WLIW LTGG +H TDV+NASRTML N+ TL+WD LE GIPA + P++ +
Sbjct: 160 TIDSWLIWKLTGG---KVHATDVTNASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPS 216
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
SE+ G IPI+G G+Q AA+ GQAC + G AK+TYGTG F+ +NTGE+ V+
Sbjct: 217 SEVFGYTDPDLLGAEIPIAGIAGDQQAALFGQACFEPGMAKNTYGTGCFMLMNTGEKPVR 276
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
SK+GLL+T+A++LG K YALE D LG+I +A+E E LA V
Sbjct: 277 SKNGLLTTIAWQLGGK--VTYALEGSIFIAGAAVQWLRDGLGLIESAAETEALARSVPDN 334
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
GG+YFV AF GL AP+W DAR G+TR T++AH ARA LES+ + +D+L++ + D+
Sbjct: 335 GGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTRAHIARAALESIAYQTRDLLEAMEADS 394
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
P LRVDGGA+ N+ LMQ QAD+LG PV RP E+TALGAA+ AGLA+
Sbjct: 395 G--------IPLKELRVDGGASANDFLMQFQADILGVPVERPKVTETTALGAAYLAGLAV 446
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVE 407
G++K + A + F+P ++EE R+ +AV+
Sbjct: 447 GLWKSLDELAK--LWQVDRRFEPSMSEEEREALYAGWKKAVK 486
|
This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486 |
| >gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-141
Identities = 180/352 (51%), Positives = 234/352 (66%), Gaps = 25/352 (7%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR 134
R L T+D+WLIW+LTGG NG +H+TDV+NASRTMLMN++TL+WD + GIP EI
Sbjct: 162 KRCLFGTVDSWLIWNLTGGPNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPMEIL 221
Query: 135 PKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
P+I S+SEI G I K P+ GIPISG LG+Q AA++GQ C KKG+AK+TYGTG F+ NT
Sbjct: 222 PEIRSSSEIYGYI-KEGPLEGIPISGILGDQQAALVGQMCFKKGQAKNTYGTGCFLLYNT 280
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
G + V S HGLL+T+A+KLGP PT YALE D+LGII +S+IE+LA
Sbjct: 281 GTKPVFSTHGLLTTVAYKLGPDKPTIYALEGSVAIAGAAIRWLRDNLGIIKTSSDIEKLA 340
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
V ++G +YFV AF+GL AP+WR DAR + G+T+FT+K H ARA LE++CF +++L+
Sbjct: 341 SEVGTSGDVYFVPAFSGLYAPYWRKDARGIICGLTQFTTKNHIARAALEAVCFQTREILE 400
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAF 359
+ KD G+ P L+VDGG T NNLLMQ+QAD+LG PV+RP+ E+TALGAA
Sbjct: 401 AMNKDC---GI-----PLSKLQVDGGMTSNNLLMQLQADILGIPVVRPSMPETTALGAAM 452
Query: 360 AAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
AAG A GV T TF P + EE R + AV+R+
Sbjct: 453 AAGAAKGVEVWSLEPEDLSAV-TFETFLPSITEEERNIRYAKWKMAVQRSLG 503
|
This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504 |
| >gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 396 bits (1019), Expect = e-135
Identities = 175/355 (49%), Positives = 229/355 (64%), Gaps = 29/355 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW+LTGG + HVTDV+NASRT LMN+KTL WD+ L GIP E P+I
Sbjct: 162 LFGTIDTWLIWNLTGGKS---HVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEI 218
Query: 138 VSNSEIIGKI--GKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTG 194
S+SE G I + G+PI+GC+G+Q AA++G C +KG+AK+TYGTG F+ +NTG
Sbjct: 219 KSSSENFGTISGEAVPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTG 278
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
E+V SKHGLL+T+ ++LGP PT YALE D++G+IS+ SEIE+LA
Sbjct: 279 TEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLAR 338
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
V TGG+ FV AF+GL AP+WR DAR +G+T T++AH RA LE++ DV++S
Sbjct: 339 SVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIES 398
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFA 360
+KDA G+ + LRVDGG T N LLMQ QAD+LG ++ P E+TALGAA
Sbjct: 399 MEKDA---GIELN-----SLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALL 450
Query: 361 AGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLADL 415
AGLA+GV+K E R S TF P ++ E RK + +AVER+ A L
Sbjct: 451 AGLAVGVWKSLEEVKKLIRRSNS-TFSPQMSAEERKAIYKEWNKAVERSLKWAKL 504
|
Length = 504 |
| >gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 395 bits (1016), Expect = e-134
Identities = 165/347 (47%), Positives = 220/347 (63%), Gaps = 30/347 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWLIW LTGG +HVTD SNASRTML N+ +L+WD LE LGIP + P++
Sbjct: 162 LFGTIDTWLIWKLTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEV 218
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
+SEI G G G +PI+G G+Q AA+ GQ C + G AK+TYGTG F+ +NTGE+
Sbjct: 219 RPSSEIYGVTGIGFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEK 278
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V+S++GLL+T+A+ L K YALE D LG+I +AS+ EELA V
Sbjct: 279 PVRSENGLLTTIAWGLDGK--VTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESV 336
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
GG+YFV AF GL AP+W DAR G+TR T+KAH ARA LES+ + +DVL++ +
Sbjct: 337 EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAME 396
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362
KD+ + LRVDGGA+ NN LMQ QAD+LG PV RP +E+TALGAA+ AG
Sbjct: 397 KDS--GIKLT------RLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAG 448
Query: 363 LAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
LA+G +K+ + A F+P ++EE R++ +AV+R+
Sbjct: 449 LAVGFWKDLDELAELWPLD--KEFEPGMDEEEREELYAGWKKAVKRS 493
|
Length = 499 |
| >gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-132
Identities = 169/349 (48%), Positives = 227/349 (65%), Gaps = 26/349 (7%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T+DTWL+W+LTGG G +HVTDV+NASRTMLM+L+TLDWD L GIP + P+I
Sbjct: 157 LFGTMDTWLLWNLTGGPRGGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRSMLPEI 216
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
+SE+ G + + G+PI+G LG+Q AA+ GQ C + GEAK+TYGTG F+ LNTG E
Sbjct: 217 RPSSEVYGTVRGRGILAGVPIAGVLGDQQAALFGQTCFEAGEAKNTYGTGCFLLLNTGTE 276
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V+SKHGLL+T+A++ G P YALE D+LG+I A+EIE LA V
Sbjct: 277 PVRSKHGLLTTVAYQFG-GQPAVYALEGSIAVTGSLVQWLRDNLGLIKTAAEIETLARTV 335
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
GG+YFV AF+GL AP+WR DAR V +G+TR+ +K H ARAVLE+ F ++V+D+
Sbjct: 336 EDNGGVYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHIARAVLEATAFQTREVVDAMN 395
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362
D+ E LRVDGG N LLMQ QAD+LG PV+RP E+TALGAA+AAG
Sbjct: 396 ADS-------GVALE-SLRVDGGMVANELLMQFQADILGVPVVRPKVAETTALGAAYAAG 447
Query: 363 LAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
LA+G +K+ + S+ T+ P ++ R++ + +AV RTF+
Sbjct: 448 LAVGFWKDTDELRSNWSED--KTWTPSMDPAERERLYDGWKKAVTRTFD 494
|
glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495 |
| >gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 364 bits (937), Expect = e-123
Identities = 165/339 (48%), Positives = 220/339 (64%), Gaps = 26/339 (7%)
Query: 75 DRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI-PAEI 133
T+D+WLI++LTGG +HVTDV+NASRTM MNL TL +D+ L+ GI I
Sbjct: 161 GDLAFGTVDSWLIYNLTGGPKTKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDKKII 220
Query: 134 RPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLN 192
P+IVS+SE+ G I G P+ G+PI+GCLG+Q AA++GQ GEAK+TYGTG F+ N
Sbjct: 221 LPEIVSSSEVYGNIAYG-PLEGVPIAGCLGDQSAALVGQKAFTPGEAKNTYGTGCFLLYN 279
Query: 193 TGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEEL 238
TGE+ V SKHGLL+T+A++ GP A YALE D+LG+IS A +I EL
Sbjct: 280 TGEKPVISKHGLLTTVAYQFGPGAKPVYALEGSIAVAGSAVKWLRDNLGLISKAEDIGEL 339
Query: 239 ALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298
A +V +GG+ FV AF+GL AP+W DDAR GIT++T+K+H ARA LE++CF + +L
Sbjct: 340 ASQVPDSGGVVFVTAFSGLFAPYWDDDARGTIFGITQYTTKSHIARAALEAVCFQTRAIL 399
Query: 299 DSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAA 358
D+ KD+ P L VDGG + +++ MQIQAD+LG PV RP ESTALGAA
Sbjct: 400 DAMSKDS--------GSPLKALAVDGGMSNSDVAMQIQADILGIPVERPEMRESTALGAA 451
Query: 359 FAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKK 397
AAG A+G+F + T+ +T FKP ++E R K
Sbjct: 452 IAAGFAVGLFGWDLTLKDIN-TEGNTVFKPKTDDEERAK 489
|
This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496 |
| >gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = 4e-99
Identities = 147/348 (42%), Positives = 203/348 (58%), Gaps = 33/348 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
TID+WLI+ LT NG TD SNASRT L N+ TLDWD+ E GIP +I P++
Sbjct: 157 AFGTIDSWLIYKLT---NGKSFKTDYSNASRTQLFNIHTLDWDEELCELFGIPRKILPEV 213
Query: 138 VSNSEIIGKIG-KGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGE 195
+ + + G G IPI G LG+ HAA+ GQ C + G K TYGTG+ + +N GE
Sbjct: 214 LDSDSVFGYTDLNGILPHPIPIHGVLGDSHAALFGQGCFEPGMIKVTYGTGSSVMMNIGE 273
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALR 241
+ V S HGL+++LA+ +G K Y LE D LG+I + +E EELAL
Sbjct: 274 KPVLSDHGLVTSLAWSVGGKV--TYVLEGNINYTGATITWLKDKLGLIQDPAETEELALS 331
Query: 242 VNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301
N G+Y V AF GL AP+W+ DA++ +G+TR T KA RA LES+ + + DV+D+
Sbjct: 332 ANPNDGVYLVPAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVRAALESIAYQINDVIDAM 391
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
++D+ I + LRVDGG T N LMQ QAD+L +PV E +ALGAA+AA
Sbjct: 392 EEDS--GIEISE------LRVDGGPTRNRYLMQFQADILNAPVKVSNIEELSALGAAYAA 443
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
GLA+G++ +E + A RTK ++P ++EE R +K AV +
Sbjct: 444 GLALGLYNQEFLEAKEYRTK----YEPCMDEEVRNRKYSGWKEAVRKV 487
|
This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487 |
| >gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 3e-74
Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 31/303 (10%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
T+D+WL+W+LTGG + TD SNA+RT L++L WD L+ GIP P ++++
Sbjct: 158 TVDSWLLWNLTGG---AVFATDASNAARTQLLDLHGGQWDPQLLDLFGIPRAALPDVLAS 214
Query: 141 SEIIGKIGKGCPI-TGIPISGCLGNQHAAMLGQACKK-GEAKSTYGTGAFIRLNTGEEVV 198
+ G + G+PI +G+ HAA+ G GE K+TYGTG+ + + + +
Sbjct: 215 AGDFGHTRGLGGLPDGVPILAMIGDSHAALFGHGAFAPGEVKATYGTGSSV-MTPLRQAI 273
Query: 199 KSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNS 244
HGL +T+A+ G + YALE D LG+ + + + ELA +
Sbjct: 274 APSHGLSTTIAWHDGGE--PTYALEGNITVTGAAVAWMADLLGL-PDPAALSELAATASD 330
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
GG+YFV A GL APWW DAR + G+T T +AH ARA LES+ F + DV ++ Q+
Sbjct: 331 NGGVYFVPALTGLGAPWWDRDARGLISGLTLGTGRAHLARAALESIAFQIADVFEAMQQA 390
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLA 364
A P L VDGGAT N LMQ+QADLLG PV+R E +ALGAA AG A
Sbjct: 391 A--------GGPLERLSVDGGATRNRFLMQLQADLLGRPVIRSDTPEVSALGAALLAGKA 442
Query: 365 IGV 367
+G
Sbjct: 443 LGW 445
|
This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484 |
| >gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-72
Identities = 137/377 (36%), Positives = 195/377 (51%), Gaps = 51/377 (13%)
Query: 54 QRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMN 113
Q PEL + A EG L TIDTWL++ LTGG HVTDVSNAS T L +
Sbjct: 158 QNNPEL-----KKALKEGNVL----FGTIDTWLLYKLTGG---KEHVTDVSNASATGLFD 205
Query: 114 LKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK---GCPITGIPISGCLGNQHAAML 170
T++W L GIP+ I PK+V S G G PI PI +G+Q AA+
Sbjct: 206 PFTMEWSSWALSLFGIPSSILPKVVDTSGDFGSTDPELFGVPI---PIRASVGDQQAALF 262
Query: 171 GQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE------ 223
G C ++G+ K T GTGAF+ +NTG + S GL + +K+G + Y E
Sbjct: 263 GSCCFERGDVKITMGTGAFVNINTGPKPHASVKGLYPLVGWKIGNE--VVYLAEGASNDT 320
Query: 224 -------DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRF 276
S+G+ ++ +E ++A V + G+YF+ AF+GL P A + IG+
Sbjct: 321 GTAIDWAQSIGLFTDPAETSDMANSVPDSEGVYFIPAFSGLQPPINDPRACAGFIGLKPS 380
Query: 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQ 336
T+K H RA+LES+ F +K + ++ +K+ + IK +RVDGG + N+ + Q+
Sbjct: 381 TTKEHLVRALLESIAFRIKQLYETIKKETGQP--IKK------IRVDGGVSNNDFICQLL 432
Query: 337 ADLLGSPVLRPADIESTALGAAFAAGLAIGVFKE-EEIFASSERTKTSTTFKPLLNEEFR 395
ADL G PV R E +ALGAA+ AGLA+G++K EE+ + K F+P R
Sbjct: 433 ADLTGLPVERADSTEMSALGAAYLAGLAVGLWKNKEELK---KLRKVEKIFEP--KPNIR 487
Query: 396 KKKAESQ---CRAVERT 409
KK RAV+R
Sbjct: 488 KKYLPIMKKWERAVKRF 504
|
This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504 |
| >gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 8e-50
Identities = 97/313 (30%), Positives = 141/313 (45%), Gaps = 43/313 (13%)
Query: 72 ETLDRTLM-TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 130
E + T+ +L + LTG V D SNASRTML +++T DWD LE GIP
Sbjct: 143 EIYSKADKILTVADYLAYRLTG-----EFVIDYSNASRTMLFDIQTRDWDPELLEAAGIP 197
Query: 131 AEIRPKIVSNSEIIGKI----GKGCPI-TGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYG 184
E+ P++V E+ G I + G P+ +Q A LG A +G+A + G
Sbjct: 198 RELLPEVVPPGEVAGAISAEAAALLGLPPGTPVVAGGHDQQCAALGAGAVDEGDAALSAG 257
Query: 185 TGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIIS 230
T I + E + LL A P Y E D G+
Sbjct: 258 TSEVITAVSEPEPATDEG-LLCYPA-----AIPGKYVTEASFFTGGALLRWFRDEFGLRE 311
Query: 231 NASEIEELALRV--NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLE 288
+ S+ E A + G+ + F+G P+W AR G+T T++A RA+LE
Sbjct: 312 DGSDYEAAAQEAPNSGPNGLLILPHFSGSGTPYWDPAARGAIFGLTLGTTRADIYRALLE 371
Query: 289 SMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA 348
+ + ++D L DA+E IK + +RV GG + ++L +QI AD+ G PV P
Sbjct: 372 GIAYELRDNL-----DALEAAGIKIDR----IRVTGGGSRSDLWLQILADIFGLPVETPE 422
Query: 349 DIESTALGAAFAA 361
E+ ALGAA A
Sbjct: 423 VREAGALGAALLA 435
|
This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435 |
| >gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 8e-39
Identities = 98/306 (32%), Positives = 148/306 (48%), Gaps = 37/306 (12%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R + T D + + LTG VTDV+ ASRT LMNL+TL WD G+P E P
Sbjct: 148 RLRLGTTDAFFLDRLTG-----TFVTDVTTASRTSLMNLETLQWDPELCRLFGVPIECLP 202
Query: 136 KIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQACKK-GEAKSTYGTGAFIRLNTG 194
+I +G G I P++ + +Q A++ G C++ G+AK T+GTGAF TG
Sbjct: 203 EIRPT---VGDFGD---IGCTPLTASIVDQQASLYGHGCRQPGDAKITFGTGAFALAITG 256
Query: 195 EEVVKS-KHGLLSTLAFKLGPKAPTNYALEDSLGIISNA----------SEIEELALRVN 243
E + ++ GLL T+A+++G P YAL+ + + A S+ EELA
Sbjct: 257 EVIPRAPGSGLLPTVAWQIG--EPPVYALDGGVYDAAAAVEWAKRLGLFSDFEELAAFPA 314
Query: 244 STG---GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
G+ FV A +GL P W A + +G++ T++ +A+LE + +V+
Sbjct: 315 PPAIARGLAFVPALSGLACPHWDRSAAGLWLGMSLATTRQDMCQALLEGVAMRSAEVI-- 372
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFA 360
A++ L +DGG T N Q AD+L ++ P+ E TALG A
Sbjct: 373 ---YAMDGVR----PVGDRLSIDGGLTRNPYFCQFLADVLQREIVTPSFDELTALGCAAL 425
Query: 361 AGLAIG 366
A +G
Sbjct: 426 AARGLG 431
|
This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470 |
| >gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 9e-37
Identities = 93/320 (29%), Positives = 144/320 (45%), Gaps = 34/320 (10%)
Query: 79 MTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EIRPKI 137
+ I +L + LTG T++S+AS T L++++T WD L LG+P ++ P +
Sbjct: 158 ILLIKDYLRYRLTGEF-----ATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPV 212
Query: 138 VSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLG-QACKKGEAKSTYGTGAFIR 190
V E++G + G P G P+ G+ AA LG A G+ S+ GT +R
Sbjct: 213 VEPGEVLGTLTPEAAEELGLP-AGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVR 271
Query: 191 LNTGEEVVKSKHGLLSTLA-----FKLGPKAPTNYA----LEDSLGIISNASEIEELALR 241
T + + + + + F + T L + G+ + E+ E AL
Sbjct: 272 AATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALA 331
Query: 242 VN---STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298
V G+ F+ +G P AR +G+T ++AH ARAVLE + F + D L
Sbjct: 332 VPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGL 391
Query: 299 DSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAA 358
+ A+E+ KP +RV GG + L +QI AD LG PV+ P E+ ALG A
Sbjct: 392 E-----ALEE---LGGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGA 443
Query: 359 FAAGLAIGVFKEEEIFASSE 378
A A+G + A
Sbjct: 444 ALAAAALGGIYDSAEGALKA 463
|
Length = 502 |
| >gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-34
Identities = 89/326 (27%), Positives = 138/326 (42%), Gaps = 36/326 (11%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
++ D ++ LTG TD S+AS T+L + + +W GIP ++ P
Sbjct: 150 ARVLLPKD-YIRLRLTG-----ELATDRSDASGTLLFDAASREWSDDLCALYGIPEDLLP 203
Query: 136 KIVSNSEIIGKI-----GKGCPITGIPISGCLGNQHAAMLG-QACKKGEAKSTYGTGAFI 189
+ SEI G + K G P+ G+ AA LG G+A + GT +
Sbjct: 204 PLHEPSEIAGAVTPEAARKTGLKAGTPVVAGAGDNAAAALGAGVVDPGQASLSLGTSGVV 263
Query: 190 RLNTGEEVVKSK---HGLLSTLAFKLGPKAPTNYA------LEDSLG-IISNASEIEELA 239
+ + V K + + TN A D LG + +E+ ELA
Sbjct: 264 AVVSEGPVPDPKGAVITFAHAVPGRWYQVTCTNSAGSALRWARDLLGPADVSYAEMAELA 323
Query: 240 LRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298
+V G+ F+ NG P+ +AR G+T ++ H ARAVLE + F ++D L
Sbjct: 324 AQVPVGANGLLFLPYLNGERTPYNDPNARGAFFGLTLSHTRGHLARAVLEGVAFSLRDCL 383
Query: 299 DSKQKDAVEKGVIKD--AKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALG 356
+ V+ P+ + + GGA + L QI AD+LG PV PA+ E ++G
Sbjct: 384 E----------VLHGMGTAPQRIKLIGGGAK-SELWRQILADVLGVPVELPANAEGASVG 432
Query: 357 AAFAAGLAIGVFKEEEIFASSERTKT 382
AA A + G F + A + R
Sbjct: 433 AALLAAVGAGDFADLNEAARTVRQLP 458
|
This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-33
Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 36/314 (11%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
++++++ LTG + D S+AS + L +++ +W + L+ LGIP ++ PK+V
Sbjct: 155 QSNSYIVYKLTGEL-----AVDHSSASGSGLYDIRKGEWSEELLDLLGIPEDLLPKLVRP 209
Query: 141 SEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNT 193
+I+G + + G P G P+ + AA LG + G+A GT I + T
Sbjct: 210 GDIVGTVTEEAAEETGLP-AGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIVVT 268
Query: 194 GEEVVKSK----HGLLSTLAFKLGPKAP---------TNYALEDSLGIISNASEIEELAL 240
+ ++ G + N+ E++ G + E+EE A
Sbjct: 269 DRPKFDPRLISSPHVVPGTYLLNGGMSTGGAALRWFRDNFGPEETEGGLDAYDELEEEAE 328
Query: 241 RVNS-TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V G+ F+ G P W DAR V G+T ++AH RAVLE + + ++ +L+
Sbjct: 329 KVPPGADGLLFLPYLAGERTPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYALRHILE 388
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAF 359
E+ +K ++ + GG + L MQI+AD+LG PV+ P + +LG A
Sbjct: 389 I-----AEEAGVKVSR----VVAVGGGAKSRLWMQIKADVLGLPVVTPENTVGASLGDAL 439
Query: 360 AAGLAIGVFKEEEI 373
A +A+GV+ + E
Sbjct: 440 LAAVAVGVYDDLEE 453
|
This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492 |
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 3e-26
Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 45/327 (13%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEII 144
+L + LTG TDVS+AS T+L+++ DW L+ LGI I P++ +SE+
Sbjct: 158 YLRYRLTGE-----IATDVSDASGTLLLDVAKRDWSDELLDALGIDRAILPELYESSEVT 212
Query: 145 GKIGK------GCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTGEEV 197
G + G P G P+ G+ A +G + G+A + GT + +
Sbjct: 213 GTLTAEAAAELGLP-AGTPVVAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVV-FAVSDSP 270
Query: 198 VKSKHGLLSTLAFKLGPKAPTNY-----------ALE---DSLGIISNASEIEELALRVN 243
G + T + P + +L+ D+ G + E+ A +V
Sbjct: 271 APDPEGRVHTFCHAV----PGRWYLMGVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQVP 326
Query: 244 S-TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
+ G+ F+ +G P +AR IG+T ++AH RAVLE + F ++D L+
Sbjct: 327 PGSEGLLFLPYLSGERTPHNDPNARGAFIGLTLSHTRAHLTRAVLEGVAFSLRDSLE--- 383
Query: 303 KDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
++++ + GG + L +QIQAD+LG PV E ALGAA A
Sbjct: 384 -------ILRELGVPIDRIIAIGGGARSPLWLQIQADVLGLPVDTLKGEEGPALGAAILA 436
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKP 388
+ G + E A+ K T +P
Sbjct: 437 AVGAGWYPSVEE-AALAVPKVEETIEP 462
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-26
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 179 AKSTYGTGAFIRLNTGEEVVKSKHGLLSTLA-----------FKLG-------PKAPTNY 220
A + GT +F+ + T E V+ S HG+ G
Sbjct: 1 AAVSLGTSSFVLVETSEPVL-SVHGVWGPYTNEGGWGLEGGQSAAGSLLGWLLQTLRARE 59
Query: 221 ALEDSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKA 280
L D+ G++ + + + LA + GG+ F+ F+G AP AR G++ T+ A
Sbjct: 60 ELRDA-GLVESLALLLALAADAPA-GGLLFLPDFSGERAPGADPHARGAITGLSSPTTLA 117
Query: 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL 340
+ RA+LE + ++ +L++ + I GG + N LL+Q+ AD L
Sbjct: 118 NLYRALLEGLALALRQILEALAELGAPIDRI---------IASGGGSRNPLLLQLLADAL 168
Query: 341 GSPVLRPADIESTALGAAFAAGLA 364
G PV P E+TALGAA A +A
Sbjct: 169 GRPVEVPETAEATALGAALLAAVA 192
|
This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193 |
| >gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-25
Identities = 84/334 (25%), Positives = 134/334 (40%), Gaps = 46/334 (13%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLD--WDKPTLETLGIPAEIRPKIVSNSE 142
+L LTG TD +AS T L + + W + L GI E P++V +++
Sbjct: 168 YLNLRLTGR-----FATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTD 222
Query: 143 IIGKIGK------GCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTGE 195
++G + G P G P+ G+ AA +G A G+A GT ++I +
Sbjct: 223 VVGTVLPEAARELGLP-EGTPVVAGGGDASAAAVGAGAVADGDAHLYLGTSSWIATHVPF 281
Query: 196 EVVKSKHGLLS--------TLAFKLGPKAPTNYA--------LEDSLGIISNASEIEELA 239
+H + S L A ED L S E L
Sbjct: 282 PKTDVRHRIFSLPHAIPGKYLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERLD 341
Query: 240 LRVNST----GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVK 295
S G+ F+ +G +P +AR ++ T++A RAVLE + ++
Sbjct: 342 ELAASAPPGSNGLIFLPWLHGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNLR 401
Query: 296 DVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTA 354
+L +AVE+ + + LR GG ++L QI AD+LG P+ R D E+ A
Sbjct: 402 WLL-----EAVERFLGRRLGE---LRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGA 453
Query: 355 LGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388
GAA A + +G+ + + TF+P
Sbjct: 454 RGAAAIAAVGLGLLSFFDAAGQ--LVRVDRTFEP 485
|
This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514 |
| >gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-22
Identities = 91/348 (26%), Positives = 139/348 (39%), Gaps = 54/348 (15%)
Query: 55 RIPELTRSRQQTASS----------EGETLDR--TLMTTIDTWLIWSLTGGVNGDLHVTD 102
I ELT E E L R T++ D W+ + LTG TD
Sbjct: 118 AIFELTGQGLWAGQPSSLLAWLKEHEPERLARAGTVLFCKD-WIRFRLTGEA-----ATD 171
Query: 103 VSNASRTMLMNLKTLDWDKPTLETLGIPAEIR--PKIVSNSEIIGKIGK------GCPIT 154
++AS + L++L+T +D L+ LG+ P IV +++I+G + G P
Sbjct: 172 PTDASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGTLTAEAAALTGLPA- 230
Query: 155 GIPISGCLGNQHAAMLG-QACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG 213
G P+ G L + A LG +G+ S GT + I ++ V +L G
Sbjct: 231 GTPVVGGLFDVVACALGSGLVDEGDLCSIAGTWS-INEVLSDDPVPEAEPFGYSLYLPPG 289
Query: 214 --------PKAPTNY------ALEDSLGIISNASEIEELALRVNSTGGIYF-VRAFNGLL 258
P + +N LED S S L V + Y L
Sbjct: 290 YYLVEESSPTSASNLDWFLRTLLEDEAAKASGGSLYALLNRLVAAAPPEYHPYLFEPFLR 349
Query: 259 APWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF 318
+AR+ G++ + ++A RAV E + F +D L+ + P
Sbjct: 350 GSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHRDHLE---------ALRATGLPG- 399
Query: 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366
+R+ GGA + + Q+ AD+LG PV E ALGAA AA +A+G
Sbjct: 400 EIRLTGGAARSPVWAQMFADVLGLPVEVVEGEELGALGAAIAAAVALG 447
|
This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447 |
| >gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 8e-22
Identities = 81/320 (25%), Positives = 121/320 (37%), Gaps = 66/320 (20%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
+I ++++ L G V D S AS T L+N+ TLDWD+ LE GI E P++V
Sbjct: 153 SIKEYVLYRLFG-----ELVVDYSIASGTGLLNIHTLDWDEEALEIAGISEEQLPELVPT 207
Query: 141 SEIIG--------KIG--KGCPITGIPIS-GCLGNQHAAMLG-QACKKGEAKSTYGTGAF 188
+E + K+G + P + S G L N LG A G A T GT
Sbjct: 208 TEQLRGLKAERAPKLGLPEDTPFV-LGASDGALSN-----LGVGAVDPGVAAITIGTSGA 261
Query: 189 IRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSL----GIISNA------------ 232
IR+ + V L Y L+ G ++N
Sbjct: 262 IRVVLDQPVTDPPGRL-------------FCYRLDKGRWVLGGAVNNGGIVLRWLRDTLA 308
Query: 233 ----SEIEELALRVNS--TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAV 286
E EEL + T G+ F+ A G P W R+ G+TR + A
Sbjct: 309 LPEEEEAEELGIDPYDGLTRGLEFLPAGAGERFPPWLSGERAPLWGLTRAARGSFIGLAA 368
Query: 287 LESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR 346
+E + ++ +L+ + + A ++ GGAT + AD L +L
Sbjct: 369 MEGVAHRLRAILEG----IIFNLSVGLA----LVEASGGATESRAWGGFLADALWRQILA 420
Query: 347 PADIESTALGAAFAAGLAIG 366
E+ GAA A A+G
Sbjct: 421 DIFEEAPLRGAALLALSALG 440
|
This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440 |
| >gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 9e-22
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
I +L W LTG TD S+AS TM+ N+KTL+WD+ L LGIP ++ P +V +
Sbjct: 155 LIHDYLRWRLTG-----QFTTDYSDASGTMMFNIKTLEWDEELLAILGIPPDLLPPLVES 209
Query: 141 SEIIGKI------GKGCPITGIPISGCLGNQHAAMLG 171
SEI G + G GIP+ G G+ AA LG
Sbjct: 210 SEIYGTLNPEHAALFGLD-EGIPVVGGGGDNQAAALG 245
|
This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245 |
| >gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 2e-19
Identities = 98/377 (25%), Positives = 140/377 (37%), Gaps = 70/377 (18%)
Query: 50 MVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRT 109
M P+ +I L + L+ I ++ L + D S AS T
Sbjct: 129 MAPLSKIIWLEAEHPDIYQKAAKYLE------IKGYIFQRLF-----GTYKIDYSTASAT 177
Query: 110 MLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCP-----ITGIPIS----- 159
+ NL LDWDK LE GI PK+V +EI + P GI S
Sbjct: 178 GMFNLFELDWDKEALELTGIKESQLPKLVPTTEIE----ENLPHEYAKKMGIQSSTPFVI 233
Query: 160 ----GCLGNQHAAMLG-QACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP 214
G L N LG A KKGEA T GT IR + K + L
Sbjct: 234 GASDGVLSN-----LGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKG---RIFCYALTK 285
Query: 215 K-----APTNYA------LEDSL--GIISNAS--------EIEELALRVN-STGGIYFVR 252
+ P N D + I A+ + E+A RV+ G+ F
Sbjct: 286 EHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHP 345
Query: 253 AFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIK 312
G AP W +AR G+T K H RA LE + + + V + VE V+
Sbjct: 346 YLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALA----LVE--VMG 399
Query: 313 DAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEE 372
D P +++ GG + + Q+ +D+ ++ P ES+ LGA A+G E+
Sbjct: 400 D--PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLKALG--LIED 455
Query: 373 IFASSERTKTSTTFKPL 389
S T+ T P+
Sbjct: 456 FSEVSTMVGTTETHTPI 472
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505 |
| >gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 77/303 (25%), Positives = 122/303 (40%), Gaps = 47/303 (15%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNS 141
I ++++ LTG VTD + ASRT+L +++ +W + LE GIP + P++V +
Sbjct: 152 IPDYILFRLTGRP-----VTDFTLASRTLLFDIRAREWSEELLEMFGIPPDALPELVPSG 206
Query: 142 EIIGKIGKG-CPITGIPIS---GCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEV 197
IIG++ K G+ G+ H +G A + T E +
Sbjct: 207 TIIGEVSKDAAESLGLSTGTPVVLGGHDH--PVGSYA----AGVIDPGDILDSMGTAEAL 260
Query: 198 VKSKHGLLSTLAFKLG-----PKAPTNYALEDSLGIISNASEIEELALRVNSTGGIYFVR 252
+ L + G P Y L G+ S IE LR G R
Sbjct: 261 LAIASAKLKETLTREGVAFGVYAEPDRYYLIA--GLPSGGFAIE--WLRNILGGEASSKR 316
Query: 253 A--------------FNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298
A G +P + A G+T TS+ R+VLE + F + L
Sbjct: 317 AQEKLLDSAALFYPYSRGSGSPIRSEIAGGAFYGLTDTTSQEDITRSVLEGLTFEARSTL 376
Query: 299 DSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAA 358
+ +EK + ++ + V GG + N L +Q++A +LG P+ + E ALGAA
Sbjct: 377 EC-----LEKLGFEGSR----IVVIGGGSRNKLWLQLKASVLGKPIEVLDEAELVALGAA 427
Query: 359 FAA 361
A
Sbjct: 428 LLA 430
|
This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-19
Identities = 86/321 (26%), Positives = 134/321 (41%), Gaps = 33/321 (10%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEII 144
+L + LTG +VT+ S+AS T ++ W K L+ L +P P+++ +SE
Sbjct: 157 YLRYRLTGE-----YVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKA 211
Query: 145 GKIGK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEV 197
G + G G+P++ G+ A +G G+A + GT + T + +
Sbjct: 212 GTVRPEVAARLGLS-AGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPL 270
Query: 198 VKSK---HGLLSTLA---FKLGPKAPTNYALE---DSLGIISNASEIEELALRVN-STGG 247
HG L +G +LE + G + + ELA + G
Sbjct: 271 PDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGKE-DVEALNELAEQSPPGAEG 329
Query: 248 IYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307
+ F+ NG P AR IG+T T++A RAVLE + F ++D LD E
Sbjct: 330 VTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDI----LRE 385
Query: 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGV 367
G I +R+ GG + Q+ AD+ G+PV P E ALGAA A A+G
Sbjct: 386 AGGIPIQS----IRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGE 441
Query: 368 FKEEEIFASSERTKTSTTFKP 388
+ S K + + P
Sbjct: 442 KDLAAL-CSEAVVKQTESVLP 461
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 85/364 (23%), Positives = 138/364 (37%), Gaps = 70/364 (19%)
Query: 67 ASSEGETLDRT-LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTL- 124
+E E +T + +L + LTG V V++ + + K W K
Sbjct: 141 RENEPEIWAKTAKFLLLSGYLTYKLTG-----RFVDSVASQVGYIPFDYKKRRWAKKEDL 195
Query: 125 --ETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQAC-K 175
+ I E P++V ++IG I G P G P+ ++ LG +
Sbjct: 196 KWQGFPIEPEQLPELVPPGKLIGTITAEAAEATGLP-EGTPVIAGGSDKACETLGAGALE 254
Query: 176 KGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPK----APTNYALEDSL--G-- 227
G A + GT A + + + P P Y E + G
Sbjct: 255 PGIACLSLGTTATVNGTSSRYF----------EPDRFFPAYPAVIPGGYNPEIEIFRGYW 304
Query: 228 IISNASEIEELA---LRVNSTGGIYFVRAFNGLLA-------------------PWWRDD 265
++S EE ++ GI + L P W +
Sbjct: 305 LVSWF--KEEFGQKEVQEAEELGIAPEALLDEALKEIPPGSDGLMLQPYWGPGMPHWDPE 362
Query: 266 ARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325
AR IG ++AH RA++E + + +++ L+ +K K IK LRV GG
Sbjct: 363 ARGAIIGFGDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVK--IK------KLRVSGG 414
Query: 326 ATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKE-EEIFASSERTKTST 384
+ ++L+ QI AD+ G PV RP E++ LGAA AA + G + + E A + +
Sbjct: 415 GSQSDLICQITADIFGLPVERPHTYEASGLGAAIAAAVGAGWYPDFAE--AVAAMVRVGK 472
Query: 385 TFKP 388
TF+P
Sbjct: 473 TFEP 476
|
This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488 |
| >gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 78/304 (25%), Positives = 125/304 (41%), Gaps = 41/304 (13%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEII 144
++ + LTG + TD + AS + LM+ T W ET+G+ ++ P + +II
Sbjct: 160 YINFMLTGAM-----ATDRTEASCSFLMDPATRSWSSQACETMGLDVDLLPPLRLPLDII 214
Query: 145 GKIGK------GCPITGIPISGCLGNQHAAMLGQA-CKKGEAKSTYGTGAFIRLNTGEEV 197
G++ + G P GIP+ + A+LG C+ G + GT + L +
Sbjct: 215 GQVTQPAADLTGLP-AGIPVLVGASDYAMALLGSGVCEPGMGSDSTGTSTIVTLVADRPL 273
Query: 198 VKSKHGLLSTLAFKLGPKAP-------------TNYALEDSLGIISNASEIEELALRVNS 244
+ H +S L G AL D +S A + E A
Sbjct: 274 L---HPEVSNLHTAEGAWGAFTLLDAGGDAVRWARRALHD--NQLSYAQLVAEAAAAPAG 328
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
+ G+ F+ G R ++R+ G+ + H RAVLE + F V L QK
Sbjct: 329 SEGLLFLPYLTGERLGEHR-NSRAQFFGLGAKHGRGHLHRAVLEGVAFAVWRHLRQLQKC 387
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLA 364
+PE ++ GGA L ++I+A + G P+L P + E +G A A +A
Sbjct: 388 Q--------GRPERMIASGGGAR-TALWLKIKASVYGLPILVPREQECGVVGCAAMAAVA 438
Query: 365 IGVF 368
G F
Sbjct: 439 TGRF 442
|
This subgroup is composed of proteobacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 493 |
| >gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 8e-14
Identities = 76/323 (23%), Positives = 127/323 (39%), Gaps = 55/323 (17%)
Query: 78 LMTTIDTWLIWS--LTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
L+ + ++ S LT + G+ TD + A +M+ +L + +W L LG+ E+ P
Sbjct: 146 LLEKMHKFVFISSMLTHRLTGEF-TTDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFP 204
Query: 136 KIVSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFI 189
+V E IG + G P GIP+ + A+ G ++ + + GT +
Sbjct: 205 PLVDAGEKIGLLTTEAAQLLGLPA-GIPVISAGHDTQFALFGSGAEQNQPVLSSGTWEIL 263
Query: 190 RLNTGEEVVKSKHGLLSTLAFKLGPKAPT-------NYALE-DSLGIIS----------- 230
+ +S L + + G N A++ G+I
Sbjct: 264 -------MARSAQAELDRESLEQGLTVELDAQSGLYNPAIQWLGSGVIEWVGKLFFSAEY 316
Query: 231 NASE-----IEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARA 285
+ E IEE G+ F F L D G++ T++ H RA
Sbjct: 317 GSGELYQTMIEEAEKAGPGADGVNFEPDFLQL------GDGNGSIEGLSLHTTRGHIYRA 370
Query: 286 VLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVL 345
LE + +K LD ++ + K + ++ V GG + N L QI+AD L P+
Sbjct: 371 ALEGLTNQLKRNLDYLEQ-------VGQFKAKPLILV-GGGSKNTLWNQIRADALQIPLK 422
Query: 346 RPADIESTALGAAFAAGLAIGVF 368
EST LGAA A +G++
Sbjct: 423 VVDQAESTVLGAAMFAFAGVGIY 445
|
This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 254 FNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE-KGVIK 312
F G P+ AR G+T ++AH RA+LE + + + + D+ + E ++
Sbjct: 345 FQGNRTPYTDPLARGAIWGLTLGHTRAHVYRAILEGVAYGTRHIFDAMEAAGYEVSEIV- 403
Query: 313 DAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFK 369
GGAT + L +QI AD++G P + ++ LG A A + G+F
Sbjct: 404 ---------AAGGATRSRLWLQIHADVIGVPFELTEETDAPLLGCAILAAVGAGIFA 451
|
This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484 |
| >gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 5e-11
Identities = 67/298 (22%), Positives = 115/298 (38%), Gaps = 45/298 (15%)
Query: 101 TDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPIT 154
TD++ A +M+ +L +W L+ LG+ + P +V E IG + G P+
Sbjct: 171 TDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLGLPV- 229
Query: 155 GIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGE---EVVKSKHGLLSTLAFK 211
G+P+ + A+ G ++ + + GT + + + ++ G L +
Sbjct: 230 GVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQ 289
Query: 212 LGPKAPTNYALEDSLGIIS----------NASE------IEELALRVN-STGGIYFVRAF 254
G P L + G++ S+ IEE L N + G + F
Sbjct: 290 AGLYNPAMQWL--ASGVLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDL 347
Query: 255 NGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDA 314
+ G+T T++ H RA LE + +K L +E+ A
Sbjct: 348 LSCGQGGIQ--------GLTLNTTRGHIYRAALEGLTAQLKRNLQ-----MLEQIGQFKA 394
Query: 315 KPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEE 372
L + GG + N L QI+A++L PV D E+T GAA +G + E
Sbjct: 395 SE---LLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPE 449
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 40/298 (13%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLG---IPAEIRPKIVSNS 141
+L + LTG +VT+ +AS T +++T +W + L+ + A+ P ++S
Sbjct: 161 YLNFWLTGR-----YVTEYGDASGTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPD 215
Query: 142 EIIGKI------GKGCPITGIPISGCLGNQHAAMLGQA-CKKGEAKSTYGTGAFIRLNTG 194
E G + G + ++ G+ +G K G + GT + +
Sbjct: 216 EPAGTVRPEAAEALGLS-GDVLVASGGGDNMMGAIGTGNVKPGVVTMSLGTSGTLYAYSD 274
Query: 195 EEVVKSKHGLLSTLAFKLG---PKAPT------NYALEDSLGIISNASEIEELALRVN-S 244
+ VV G ++ G P T + + LG+ + E+ LA +
Sbjct: 275 KPVV-DPQGEVAGFCSSTGGWLPLICTMNVTVATEQVRNLLGL--DIEELNALAAQAPPG 331
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGIT-RFTSKAHFARAVLESMCFLVKDVLDSKQK 303
G+ + FNG P +AR G+T T++A+ ARA +E F ++ LD +
Sbjct: 332 AEGLTLLPFFNGERTPN-LPNARGSLHGLTSANTTRANLARAAVEGATFGLRYGLDLLRA 390
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
++ I R+ GG + QI AD++ + V+ P E+ ALGAA A
Sbjct: 391 LGLKSTEI---------RLIGGGAKSPAWRQIIADIMNAEVVVPDTEEAAALGAAIQA 439
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 236 EELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVK 295
A R G+ + FNG +P+ + R +G+T T +A RA+LE++ F +
Sbjct: 331 AAAAERGPQLRGLLALDRFNGNRSPFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTR 390
Query: 296 DVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355
++++ + L GG ++L MQI AD+ G PV A+ E+ AL
Sbjct: 391 LIVEAFHGLGYPE--------VGPLYAAGGGARSHLWMQIHADVTGRPVRLAAEKEAPAL 442
Query: 356 GAAFAAGLAIGVF 368
GAA A +A G +
Sbjct: 443 GAALLAAVAAGHY 455
|
This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465 |
| >gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 19/169 (11%)
Query: 210 FKLGPKAPTNYALEDSLGIISNASEIEELALRVNS-------TGGIYFVRAFNGLLAPWW 262
+ P A G S + L L + G++ + FNG +P
Sbjct: 324 VRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLA 383
Query: 263 RDDARSVCIGITRFTSKAHFA---RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV 319
+ V G+T TS A RA+LE+ F + ++++ + + I
Sbjct: 384 DPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDT------ 434
Query: 320 LRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVF 368
L GG N LLMQ+ AD+ G PV+ PA ++ LGAA A +A GV
Sbjct: 435 LFASGGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVH 483
|
Length = 544 |
| >gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 272 GITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNL 331
G+T T++ HF RA LE + +K L +K I K +L V GG + N L
Sbjct: 353 GVTLNTTRGHFYRAALEGLTAQLKRNLQVLEK-------IGHFKASELLLV-GGGSRNAL 404
Query: 332 LMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEE 372
QI+A++L P+ D E+T GAA +G F E
Sbjct: 405 WNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPE 445
|
Length = 470 |
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF--VLRVDGGATVNNLLMQIQ 336
+A RA+ E+ + LD I D L GGA+ + L QI
Sbjct: 377 RATLFRALEENAAIVSAWNLDI----------ITDFTGFEPDYLVFAGGASKSKLWSQIL 426
Query: 337 ADLLGSPVLRPADIESTALGAAFAAG 362
AD+ G PV+ P E+TALGAA AAG
Sbjct: 427 ADVTGKPVVVPVVKEATALGAAIAAG 452
|
This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452 |
| >gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 100 VTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKI 147
V + +NAS T L++ +T DWD LE LGIP E+ P +V ++G +
Sbjct: 167 VNEYTNASTTQLLDPRTRDWDTELLEKLGIPEELFPPLVEPGTVLGPL 214
|
This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440 |
| >gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 235 IEELALRVNS----TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESM 290
+EELA S T ++ + F+G +P + R V G+T TS AR L ++
Sbjct: 360 LEELAAEKGSVAYLTRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATL 419
Query: 291 CFL---VKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRP 347
+ + ++++ + I L GG + N L +Q+ AD G PV+ P
Sbjct: 420 QAIAYGTRHIIEAMNAAGHK---ID------TLFACGGLSKNPLFVQLHADATGLPVVLP 470
Query: 348 ADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388
+ E+ LGAA +A G F + A + ++ T KP
Sbjct: 471 KEEEAVLLGAAMLGAVAAGDFPSLK-EAMAAMSRPGRTVKP 510
|
This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536 |
| >gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 69/297 (23%), Positives = 123/297 (41%), Gaps = 43/297 (14%)
Query: 94 VNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIG----KIGK 149
+ G+ +D+S+A+ TM +++ DW L+ + + P + SEI G ++ K
Sbjct: 160 MTGEF-ASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAK 218
Query: 150 GCPITGIPISGCLGNQHAAMLGQA-CKKGEAKSTYGT-GAFIRLNTG-----EEVVKS-- 200
+ +P+ G+ A +G +A + GT G + ++ G E V S
Sbjct: 219 AWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFC 278
Query: 201 -----KHGLLSTLAFKLGPKAPTNYA-----LEDSLGIISNASEIEELALRVNSTGGIYF 250
+ L+S + L + ++A L + +I+ A + +E S ++F
Sbjct: 279 HALPQRWHLMSVM---LSAASCLDWAAKLTGLSNVPALIAAAQQADE------SAEPVWF 329
Query: 251 VRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310
+ +G P A+ V G+T ARAVLE + + + D +D +
Sbjct: 330 LPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGI---- 385
Query: 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPV-LRPADIESTALGAAFAAGLAIG 366
KP+ V + GGA + Q+ AD+ G + R ALGAA A +A
Sbjct: 386 ----KPQSVTLIGGGAR-SEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437
|
Length = 484 |
| >gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 100 VTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK--GCPITGIP 157
V NA+ +L+T W+ L+ G P + P++V I G +G G P
Sbjct: 177 VMSPHNAASWGYFDLETNAWNSEILQAAGFPVHLLPEVVPPGTIAGTLGGDWYGIPKGTP 236
Query: 158 ISGCLGNQHAAMLGQACKKGEAKSTYGTGA 187
+ LG+ ++L ++ +A GT A
Sbjct: 237 VGVALGDLQCSVLACLQEETDAVLNIGTSA 266
|
This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 256 GLLAPWWRDDARSV---------CIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306
GLLA W + R+V +G+T T RA++E+ F + +++ ++ V
Sbjct: 375 GLLALDWWNGNRTVLVDQRLTGLILGLTLQTKAEEIYRALIEATAFGARAIIERFEEQGV 434
Query: 307 EKGVIKDAKPEFVLRVDGG-ATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
++ + GG A N LLMQI AD+L P+ A ++ ALGAA A +A
Sbjct: 435 P---VER------VIAAGGIAQKNPLLMQIYADVLNRPIKVVASEQTCALGAAIFAAVAA 485
Query: 366 GVFK 369
GV+
Sbjct: 486 GVYP 489
|
This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498 |
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 79 MTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIV 138
+T I W+ + L+G + D SNA T L++L T DWD LE G+ A+I P +
Sbjct: 158 ITMISDWIAYMLSGEL-----AVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVK 212
Query: 139 SNSEIIGKIGKGCP-----ITGIPI--------SGCLG 163
++G + G P+ GCLG
Sbjct: 213 ETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLG 250
|
Length = 520 |
| >gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 324 GGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFK 369
GG + L QI AD+ G PV P E+TALG A AAG+ G++
Sbjct: 417 GGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYS 462
|
Length = 520 |
| >gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 77 TLMTTIDTWLIWS------LTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 130
L+ WL S LTG TD++ A + +++++ D+ L+ G+
Sbjct: 147 QLLEQAHAWLFISSLINHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLS 201
Query: 131 AEIRPKIVSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYG 184
+ P++V E IG + G P GIP+ + A+ G + + + G
Sbjct: 202 RRLFPRLVEAGEQIGTLQPSAAALLGLP-VGIPVISAGHDTQFALFGSGAGQNQPVLSSG 260
Query: 185 T 185
T
Sbjct: 261 T 261
|
Length = 470 |
| >gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFL---VKDVLDSK 301
+ G +P + R V IG++ SK A +M F+ + ++++
Sbjct: 378 VRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAM 437
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361
IK + + GG N LLMQ+ AD PVL P E+ GAA
Sbjct: 438 NTAGH---TIKS------IFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLG 488
Query: 362 GLAIGVFKEEEIFASSERTKTSTTFKP 388
A G + A +K T P
Sbjct: 489 AKAAGTTESLWD-AMDRMSKPGKTVWP 514
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541 |
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVS 139
T I W+++ L+G + + SNA T L +LKT DW L+ +G+ +I P +V
Sbjct: 156 TMISDWILYKLSGVL-----AVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRDDIFPPVVE 210
Query: 140 NSEIIGKIGKGC 151
+IG +
Sbjct: 211 TGTVIGTVTNEA 222
|
This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452 |
| >gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 254 FNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKD 313
FNG +P + V G+T T RA++E+ F + ++++ V
Sbjct: 382 FNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTDSGV------- 434
Query: 314 AKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEI 373
E ++ G A N ++MQI AD+ P+ A ++ ALGAA A +A GV+ +
Sbjct: 435 -PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPS 493
Query: 374 FASSERTKTSTTFKP 388
+ + T P
Sbjct: 494 AQAKMGSAVEKTLTP 508
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli [Energy metabolism, Sugars]. Length = 536 |
| >gnl|CDD|212660 cd07776, FGGY_D-XK_euk, eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 9e-04
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 272 GITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNL 331
G+ +F ARA++E SK+ A + G P ++ GGA+ N
Sbjct: 397 GVDQFFDPEIEARAIIEGQFL-------SKRARAEKLGFGIG-PPTRIIAT-GGASRNKS 447
Query: 332 LMQIQADLLGSPVLRPA-DIESTALGAAFAA 361
++Q+ AD+ G+PV + + ALGAA+ A
Sbjct: 448 ILQVIADVFGAPVYTIKEESNAAALGAAYRA 478
|
This subfamily is composed of eukaryotic D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. They belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily are similar to bacterial D-XKs, which exist as dimers with active sites that lie at the interface between two large domains. The presence of Mg2+ or Mn2+ is required for catalytic activity. Length = 480 |
| >gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQA 337
+ AR + ES+ + L+ ++ + K E V+ + GG + N LL Q+ A
Sbjct: 366 TPGEIARCIYESLALKYRRTLEELEE-------LTGKKIE-VIHIVGGGSRNELLNQLTA 417
Query: 338 DLLGSPVLR-PADIESTALG 356
D G PV+ P +E+TALG
Sbjct: 418 DATGIPVVAGP--VEATALG 435
|
This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440 |
| >gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNS 141
I +L + LTG + +NA+ T L+N+ T DWD+ L LG+PA +
Sbjct: 154 IPDYLNYRLTGKKV-----WEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPG 208
Query: 142 EIIG 145
+IG
Sbjct: 209 NVIG 212
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. Length = 454 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| PLN02295 | 512 | glycerol kinase | 100.0 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 100.0 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 100.0 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 100.0 | |
| PRK15027 | 484 | xylulokinase; Provisional | 100.0 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 100.0 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 100.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 100.0 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 100.0 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 100.0 | |
| PRK04123 | 548 | ribulokinase; Provisional | 100.0 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 100.0 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 100.0 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 100.0 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 100.0 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 100.0 | |
| PLN02669 | 556 | xylulokinase | 100.0 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 100.0 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 100.0 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 100.0 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 100.0 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 99.97 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 99.96 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.48 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.44 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.85 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.64 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.62 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.56 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.4 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.31 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 97.23 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 97.15 | |
| PLN02920 | 398 | pantothenate kinase 1 | 96.94 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 96.77 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 96.71 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 96.68 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 96.68 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 96.61 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 96.53 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 96.45 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 96.41 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 96.38 | |
| PRK11678 | 450 | putative chaperone; Provisional | 96.36 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 96.35 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 96.32 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 96.22 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 96.17 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 96.1 | |
| PF03630 | 341 | Fumble: Fumble ; InterPro: IPR004567 Pantothenate | 95.88 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 95.77 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 95.68 | |
| PLN02902 | 876 | pantothenate kinase | 95.64 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 95.64 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 95.62 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 95.22 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 95.21 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 95.2 | |
| PRK09604 | 332 | UGMP family protein; Validated | 95.04 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 94.7 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 94.67 | |
| COG2377 | 371 | Predicted molecular chaperone distantly related to | 94.54 | |
| TIGR00143 | 711 | hypF [NiFe] hydrogenase maturation protein HypF. A | 94.53 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 94.37 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 94.02 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 93.95 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 93.87 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 93.75 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 93.68 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 93.54 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 93.52 | |
| KOG1794 | 336 | consensus N-Acetylglucosamine kinase [Carbohydrate | 93.48 | |
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 93.41 | |
| TIGR03722 | 322 | arch_KAE1 universal archaeal protein Kae1. This fa | 93.18 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 92.82 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 92.26 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 91.63 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 91.11 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 91.0 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 90.83 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 90.62 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 90.51 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 90.02 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 89.89 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 88.21 | |
| COG0068 | 750 | HypF Hydrogenase maturation factor [Posttranslatio | 87.4 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 86.72 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 86.54 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 84.37 | |
| KOG2201 | 371 | consensus Pantothenate kinase PanK and related pro | 83.99 | |
| PF03727 | 243 | Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexo | 80.12 |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=585.08 Aligned_cols=387 Identities=65% Similarity=0.986 Sum_probs=326.9
Q ss_pred cc-ccCCcccccccccCCcccHHHHHhh------------hhhccccccccchHHHHhhhhcCCCccccc----ccceEE
Q 046958 17 NL-GFIFFPLGPSEHWAGFRLVVENRTV------------QWRSNKMVPVQRIPELTRSRQQTASSEGET----LDRTLM 79 (417)
Q Consensus 17 ~~-~~~g~pl~p~i~W~D~R~~~~~~~~------------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~----~~~~~~ 79 (417)
.+ |.+|+||+|+|+|+|.|+.++++++ +++|+++++.++++||+|+++|+|+ ++ +++.+|
T Consensus 88 ~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~~~~~ 164 (512)
T PLN02295 88 AWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDA---VKEAVKSGDALF 164 (512)
T ss_pred EEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHH---HHHhhhcCceEE
Confidence 46 5789999999999999999886443 3578899999999999999999997 67 556689
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCC-CCcE
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPIT-GIPI 158 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~-g~pV 158 (417)
++++|||.|+|||..+..++++|+|+||+|++||+++++||+++++.+||+.++||+|+++++++|+|+.+ +.. |+||
T Consensus 165 ~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~-~a~~g~pV 243 (512)
T PLN02295 165 GTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKG-WPLAGVPI 243 (512)
T ss_pred EcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceeccccc-cccCCCcE
Confidence 99999999999993000047999999999999999999999999999999999999999999999999987 444 9999
Q ss_pred EeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchh-----------hhh---h
Q 046958 159 SGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNY-----------ALE---D 224 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-----------~l~---~ 224 (417)
++|++|++|+++|+|+++|++.+++|||+++.+.++..+..++.+....++|..+...++.| +++ +
T Consensus 244 ~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~ 323 (512)
T PLN02295 244 AGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRD 323 (512)
T ss_pred EEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHH
Confidence 99999999999999997899999999998876655433344444444334433211012222 222 4
Q ss_pred hcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 225 SLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 225 ~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
.|+...++++++++++++++++|++|+|||.|+|+|+||+++||.|+||+..|+++||+||++|||||++|++++.|++.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 324 NLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45433457788888877777789999999999999999999999999999999999999999999999999999999863
Q ss_pred -----ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccc
Q 046958 305 -----AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSER 379 (417)
Q Consensus 305 -----~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~ 379 (417)
.+.+ +++|+++||+++|++|+||+|||+|+||++++..|++++|||++|++++|.+++.+++.+++
T Consensus 404 ~~~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~- 474 (512)
T PLN02295 404 AGEEKSHKG--------LFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEK- 474 (512)
T ss_pred hcccccCCC--------cceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhc-
Confidence 1335 78999999999999999999999999999999999999999999999999999988765466
Q ss_pred cCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhccccccC
Q 046958 380 TKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNLADLSL 417 (417)
Q Consensus 380 ~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~~~ 417 (417)
....++|+|++++.+ | ++|++|+++|++.+.|.++++
T Consensus 475 ~~~~~~~~P~~~~~~-y~~~y~~~~~~~~~~~~~~~~~~ 512 (512)
T PLN02295 475 WKNTTTFRPKLDEEE-RAKRYASWCKAVERSFDLADLSI 512 (512)
T ss_pred cCCCeEECCCCCHHH-HHHHHHHHHHHHHHHhcchhcCC
Confidence 367899999999999 7 579999999999999988874
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=584.26 Aligned_cols=381 Identities=45% Similarity=0.711 Sum_probs=327.9
Q ss_pred ccc-CCcccccccccCCcccHHHHHhh-----------hhhccccccccchHHHHhhhhcCCCcccccc----cceEEec
Q 046958 18 LGF-IFFPLGPSEHWAGFRLVVENRTV-----------QWRSNKMVPVQRIPELTRSRQQTASSEGETL----DRTLMTT 81 (417)
Q Consensus 18 ~~~-~g~pl~p~i~W~D~R~~~~~~~~-----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~----~~~~~~~ 81 (417)
+|. +|+||+|+|+|+|+|+.++++++ +++|+++++.++++|++|+++|+|+ +++ ++.++++
T Consensus 89 ~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~---~~~~~~~~~~~~~~ 165 (504)
T PTZ00294 89 WDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPA---VKDAVKEGTLLFGT 165 (504)
T ss_pred EECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHH---HHHhhhcCCeEEEc
Confidence 444 59999999999999999986543 3579999999999999999999997 677 4556999
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc---CCCCCCCcE
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK---GCPITGIPI 158 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~---g~l~~g~pV 158 (417)
++|||.|+|||+ ++.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|.|+. + +++|+||
T Consensus 166 ~~dyl~~~LTG~---~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~~-~~~g~pV 241 (504)
T PTZ00294 166 IDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVP-LLEGVPI 241 (504)
T ss_pred HHHHHHHHhcCC---ceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhcC-CCCCCcE
Confidence 999999999984 36899999999999999999999999999999999999999999999999974 4 7889999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCC-----------chhhhh---
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAP-----------TNYALE--- 223 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~-----------~~~~l~--- 223 (417)
++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.+..++.+.+..++|..+...+ ++..++
T Consensus 242 ~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~ 321 (504)
T PTZ00294 242 TGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLR 321 (504)
T ss_pred EEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHH
Confidence 9999999999999999 9999999999998865555434444545554444443311111 222222
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 303 (417)
+.|+...+++++++++++++++++++|+|||.|+|+|+||+++||.|+||+.+|+++||+||++|||||.+|++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~ 401 (504)
T PTZ00294 322 DNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEK 401 (504)
T ss_pred HHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554456888888888888888999999999999999999999999999999999999999999999999999999987
Q ss_pred hccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCC
Q 046958 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTS 383 (417)
Q Consensus 304 ~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~ 383 (417)
..|.+ +++|+++||+++|+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+ ....
T Consensus 402 ~~g~~--------~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~~~~-~~~~ 472 (504)
T PTZ00294 402 DAGIE--------LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVKKLI-RRSN 472 (504)
T ss_pred hhCCC--------cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHHHhc-cCCC
Confidence 45776 89999999999999999999999999999999999999999999999999999999885433 2357
Q ss_pred cEEeCCCCHHHHHH-HHHHHHHHHHHHhccccc
Q 046958 384 TTFKPLLNEEFRKK-KAESQCRAVERTFNLADL 415 (417)
Q Consensus 384 ~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~~~~ 415 (417)
++|+|++++++ |+ +|++|+++|+...+|.++
T Consensus 473 ~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~~~~ 504 (504)
T PTZ00294 473 STFSPQMSAEE-RKAIYKEWNKAVERSLKWAKL 504 (504)
T ss_pred cEECCCCCHHH-HHHHHHHHHHHHHHHhccccC
Confidence 89999999999 95 699999999999999864
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-72 Score=579.83 Aligned_cols=379 Identities=42% Similarity=0.631 Sum_probs=323.0
Q ss_pred ccccC-CcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCccccccc----ceEEec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLD----RTLMTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~----~~~~~~ 81 (417)
.+|.+ |+||+|+|+|+|+|+.++++++ +++|+++++.++++||+|+++|+|+ ++++ ..+|++
T Consensus 89 ~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~---~~~~~~~~~~~~~~ 165 (498)
T PRK00047 89 VWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEG---ARERAEKGELLFGT 165 (498)
T ss_pred EEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHh---HHHHHhcCCeEEeC
Confidence 36644 9999999999999999986554 2578999999999999999999997 5433 455889
Q ss_pred hhhHHHHHHhCCCCCce-EEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCC-CCCCCcEE
Q 046958 82 IDTWLIWSLTGGVNGDL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGC-PITGIPIS 159 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~-l~~g~pV~ 159 (417)
++|||.|+|||+ + .++|+|+||+|++||+++++||+++|+.+||+.++||+|+++++++|.|++.. +.+||||+
T Consensus 166 ~~dyl~~~LTG~----~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~~l~~g~pV~ 241 (498)
T PRK00047 166 IDTWLVWKLTGG----KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVPIA 241 (498)
T ss_pred hHHhHhhhhcCC----CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccccCCCCceEE
Confidence 999999999973 5 89999999999999999999999999999999999999999999999997522 67899999
Q ss_pred eccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC---------CCCCchhhhh---hhc
Q 046958 160 GCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG---------PKAPTNYALE---DSL 226 (417)
Q Consensus 160 ~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g---------~~~~~~~~l~---~~~ 226 (417)
+|++|++|+++|+|+ ++|++++++|||+++.+.+.+.|..++.+....+++... ....++..++ +.|
T Consensus 242 ~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~l~W~~~~~ 321 (498)
T PRK00047 242 GIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAGSAIQWLRDGL 321 (498)
T ss_pred EEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHHHHHHHHHHHh
Confidence 999999999999999 999999999999987666644455554444333333221 0111222232 445
Q ss_pred CCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046958 227 GIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306 (417)
Q Consensus 227 ~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g 306 (417)
+....++++++++++++++++++|+|||.|+|+|+||+++||.|+||+.+|+++||+||++|||||.+|++++.|++..|
T Consensus 322 ~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g 401 (498)
T PRK00047 322 KIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSG 401 (498)
T ss_pred cCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43345677788887778888999999999999999999999999999999999999999999999999999999986457
Q ss_pred ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEE
Q 046958 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTF 386 (417)
Q Consensus 307 ~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~ 386 (417)
.+ +++|+++||++||++|+||+|||+|+||+++...|++++|||++|++++|.+++++++ ..+. +..++|
T Consensus 402 ~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~-~~~~~~ 471 (498)
T PRK00047 402 IR--------LKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQW-KIDRRF 471 (498)
T ss_pred CC--------CceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-Hhhc-CCCeEE
Confidence 77 8999999999999999999999999999999999999999999999999999999887 5553 678999
Q ss_pred eCCCCHHHHH-HHHHHHHHHHHHHhccc
Q 046958 387 KPLLNEEFRK-KKAESQCRAVERTFNLA 413 (417)
Q Consensus 387 ~P~~~~~~~y-~~y~~~~~~~~~~~~~~ 413 (417)
+|++++++ | ++|++|+++|++.+.|.
T Consensus 472 ~P~~~~~~-y~~~~~~~~~~~~~~~~~~ 498 (498)
T PRK00047 472 EPQMDEEE-REKLYAGWKKAVKRTLAWA 498 (498)
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHhccC
Confidence 99999988 8 57999999999988773
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=580.51 Aligned_cols=374 Identities=24% Similarity=0.307 Sum_probs=326.7
Q ss_pred ccccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|.|+.++++++ +++|+++++.++++||+|+++|+|+ .++++.+|++++|||
T Consensus 83 ~~D~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~---~~~~~~~~l~~~dyl 159 (505)
T TIGR01314 83 AFDENWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPD---IYQKAAKYLEIKGYI 159 (505)
T ss_pred EECCCcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChh---HHHhhcEEECHHHHH
Confidence 578899999999999999999886654 3679999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 160 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~G-L~~g~pV~~ 233 (505)
T TIGR01314 160 FQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMG-IQSSTPFVI 233 (505)
T ss_pred HHHHcC-----CceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhC-CCCCCeEEE
Confidence 999999 8999999999999999999999999999999999999999999999999974 6 899999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeece-------ecC-CCCCchhhhh---hhcCC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF-------KLG-PKAPTNYALE---DSLGI 228 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~-------~~g-~~~~~~~~l~---~~~~~ 228 (417)
|++|++|+++|+|+ ++|++++++|||+++..+++ +|..++.+.. ++| ..+ ....++.+++ +.+..
T Consensus 234 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~ 310 (505)
T TIGR01314 234 GASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVID-KPKTDEKGRI--FCYALTKEHWVIGGPVNNGGDVLRWARDEIFD 310 (505)
T ss_pred eccHHHHHHhcCCCCCCCcEEEEechhheeeeccC-cCccCCCCce--EEEEecCCcEEEEeeecchHhHHHHHHHHhhh
Confidence 99999999999999 99999999999999877664 4544444421 222 111 1112222222 22210
Q ss_pred ----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 046958 229 ----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDV 297 (417)
Q Consensus 229 ----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~ 297 (417)
.+.|+.|+++++++| ++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.++++
T Consensus 311 ~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~ 390 (505)
T TIGR01314 311 SEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTV 390 (505)
T ss_pred hhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 135888999988875 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhc
Q 046958 298 LDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASS 377 (417)
Q Consensus 298 ~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~ 377 (417)
++.+.+..|.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.++|++++ ..
T Consensus 391 ~~~~~~~~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~ 461 (505)
T TIGR01314 391 ALALVEVMGDP--------LNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-ST 461 (505)
T ss_pred HHHHHHhcCCC--------CcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HH
Confidence 99997755766 8999999999999999999999999999999999999999999999999999999887 66
Q ss_pred cccCCCcEEeCCCCHHHHHH-HHHHHHHHHHHHhcc
Q 046958 378 ERTKTSTTFKPLLNEEFRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 378 ~~~~~~~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~ 412 (417)
+ .+..++|+|++++++.|+ +|++|+++|+++...
T Consensus 462 ~-~~~~~~~~P~~~~~~~Y~~~y~~y~~~~~~~~~~ 496 (505)
T TIGR01314 462 M-VGTTETHTPIEKNFEIYREISPIFINLSRSLLAE 496 (505)
T ss_pred h-cCCCceECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 367899999999999995 799999999988763
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=577.34 Aligned_cols=373 Identities=20% Similarity=0.237 Sum_probs=321.1
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIW 88 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~ 88 (417)
.+|.+|+||+|+|+|+|+|+.+++++++ .+|+++++.++++||+|+++|+|+ .++++.+|++++|||.|
T Consensus 82 ~~D~~g~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~~~~~~~dyl~~ 158 (484)
T PRK15027 82 LLDAQQRVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPE---IFRQIDKVLLPKDYLRL 158 (484)
T ss_pred EECCCcCCccccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHH---HHHHhhhhcChHHHHHh
Confidence 4788999999999999999999987663 578999999999999999999997 89999999999999999
Q ss_pred HHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEecc
Q 046958 89 SLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISGCL 162 (417)
Q Consensus 89 ~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~g~ 162 (417)
+||| +.++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |+ ++||++|+
T Consensus 159 ~LTG-----~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~G-L~-~~pV~~g~ 231 (484)
T PRK15027 159 RMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWG-MA-TVPVVAGG 231 (484)
T ss_pred hhcC-----CccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhC-CC-CCeEEecc
Confidence 9999 8999999999999999999999999999999999999999999999999974 6 76 69999999
Q ss_pred chHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh---hhcCCCCc
Q 046958 163 GNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE---DSLGIISN 231 (417)
Q Consensus 163 ~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~---~~~~~~~~ 231 (417)
+|++|+++|+|+ ++|++++++|||+++..+++ .+..++.+....+++..+. ...++..++ +.++. +.
T Consensus 232 ~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-~~ 309 (484)
T PRK15027 232 GDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSE-GFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-SN 309 (484)
T ss_pred cHHHHHHhccCcccCCcEEEEecCceEEEEecC-CcccCchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-cc
Confidence 999999999999 99999999999998876654 3443333322223332210 011111122 34443 45
Q ss_pred HHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 232 ASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 232 ~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
++++.++++++ |++++++|+|||.|||+|+||+++||+|+||+.+|+++||+||++|||||.++++++.|++ .|.+
T Consensus 310 ~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~-- 386 (484)
T PRK15027 310 VPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIK-- 386 (484)
T ss_pred HHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--
Confidence 77787777776 4888999999999999999999999999999999999999999999999999999999987 5776
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPL 389 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~ 389 (417)
+++|+++||++||++|+||+|||+|+||++... .+++++|||++|++++|.++|++++.+.+ +..++|+|+
T Consensus 387 ------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~~~~--~~~~~~~P~ 458 (484)
T PRK15027 387 ------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQL--PLEQSHLPD 458 (484)
T ss_pred ------ccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHHhhc--CCCceECCC
Confidence 899999999999999999999999999977654 45889999999999999999999875333 678899999
Q ss_pred CCHHHHHH-HHHHHHHHHHHHhcc
Q 046958 390 LNEEFRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 390 ~~~~~~y~-~y~~~~~~~~~~~~~ 412 (417)
+++++.|+ +|++|+++|++++++
T Consensus 459 ~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 459 AQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999995 799999999987754
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=571.03 Aligned_cols=379 Identities=47% Similarity=0.699 Sum_probs=325.8
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccc----eEEec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDR----TLMTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~----~~~~~ 81 (417)
.+|.+ |+||+|+|+|+|+|+.+++++++ ++|.++++.++++||+|+++|+|+ +++++ .+|++
T Consensus 85 ~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe---~~~~~~~~~~~~~~ 161 (493)
T TIGR01311 85 VWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPG---VREAAERGELLFGT 161 (493)
T ss_pred EEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHH---HHHHhhcCCeEEEC
Confidence 36655 99999999999999999876552 579999999999999999999997 67755 45889
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEec
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGC 161 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g 161 (417)
++|||.|+|||+ ++.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|.|++..+.+|+||++|
T Consensus 162 ~~dyl~~~LtG~---~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~g~pV~~g 238 (493)
T TIGR01311 162 IDTWLIWNLTGG---KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEIPITGV 238 (493)
T ss_pred HhHhhhhhccCC---ceEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCCCceEEEe
Confidence 999999999992 27899999999999999999999999999999999999999999999999986327799999999
Q ss_pred cchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC----------CCCCchhhhh---hhcC
Q 046958 162 LGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG----------PKAPTNYALE---DSLG 227 (417)
Q Consensus 162 ~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g----------~~~~~~~~l~---~~~~ 227 (417)
++|++|+++|+|+ ++|++++++|||+++.+.+...+..++.+....++|..+ ....++..++ +.|+
T Consensus 239 ~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~ 318 (493)
T TIGR01311 239 LGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQWLRDNLK 318 (493)
T ss_pred cccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHHHHHHHHhC
Confidence 9999999999999 999999999999886655543344444443333333221 0111222332 4555
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
....++++++++++++++++++|+|||.|||+|+||+++||+|+|++.+|+++||+||++|||||.+|++++.|++..|.
T Consensus 319 ~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 398 (493)
T TIGR01311 319 LIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGV 398 (493)
T ss_pred CCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44567888888877788889999999999999999999999999999999999999999999999999999999864476
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEe
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFK 387 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~ 387 (417)
. +++|+++||++||++|+||+|||+|+||++++..|++++|||++|+.++|.|+|++++ +++. +..++|+
T Consensus 399 ~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~-~~~~~~~ 468 (493)
T TIGR01311 399 E--------ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALW-RVEKTFE 468 (493)
T ss_pred C--------CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhc-CCCcEEC
Confidence 6 8999999999999999999999999999999999999999999999999999999987 6663 6789999
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 388 PLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 388 P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
|++++++ | +.|++|+++|+++++|
T Consensus 469 P~~~~~~-y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 469 PEMDEEE-REARYAGWKEAVKRSLGW 493 (493)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHHhcC
Confidence 9999988 8 5799999999999876
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=539.74 Aligned_cols=379 Identities=45% Similarity=0.699 Sum_probs=345.2
Q ss_pred CCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCccccc-ccceEEechhhHHHHH
Q 046958 21 IFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGET-LDRTLMTTIDTWLIWS 89 (417)
Q Consensus 21 ~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~-~~~~~~~~~~dyi~~~ 89 (417)
.|+|+.|+|.|+|+|+.+.+++++ +||..+.|.|+..|+.|+.+|.|...+.. ++-.+|.++..||.|+
T Consensus 94 tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~ 173 (499)
T COG0554 94 TGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWK 173 (499)
T ss_pred CCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheee
Confidence 489999999999999999988773 67999999999999999999999532122 3447899999999999
Q ss_pred HhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEeccchHHHhH
Q 046958 90 LTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAM 169 (417)
Q Consensus 90 LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g~~D~~aa~ 169 (417)
|||+ ..++||+||||+|+|||+++.+||+++|+.+|||.++||+|.++.++.|.+..+.+...+||..-.||++||+
T Consensus 174 LTgg---~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g~~vPI~g~~GDQQAAL 250 (499)
T COG0554 174 LTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAEVPITGVAGDQQAAL 250 (499)
T ss_pred ccCC---ceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccCCceeeccccchhHHHH
Confidence 9996 5889999999999999999999999999999999999999999999999987653567899999999999999
Q ss_pred hcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh--------------hhcCCCCcHHH
Q 046958 170 LGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASE 234 (417)
Q Consensus 170 lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~--------------~~~~~~~~~~~ 234 (417)
+|.+| ++|++..+.||+++++++++.+++.++.+++.+.+|.++ +...|+|| +.++++++..+
T Consensus 251 fGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~--gk~~YALEGsif~aGaavqWLrd~L~~i~~a~~ 328 (499)
T COG0554 251 FGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLD--GKVTYALEGSIFVAGAAVQWLRDGLGLIDDASD 328 (499)
T ss_pred hhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccC--CeEEEEEecceeehhhHHHHHHHhcCccCchhH
Confidence 99999 999999999999999999998888888889888887664 24455554 55777788888
Q ss_pred HHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Q 046958 235 IEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDA 314 (417)
Q Consensus 235 l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~ 314 (417)
.+.+|.+++.++|++|+|.|.|..+||||+++||.|+||+..++++|++||++|+|||+.+++++.|++..|.+
T Consensus 329 ~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~------ 402 (499)
T COG0554 329 SEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIK------ 402 (499)
T ss_pred HHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------
Confidence 99999998888999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHH
Q 046958 315 KPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEF 394 (417)
Q Consensus 315 ~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 394 (417)
+++++|.||.++|+++||++||++|.||+++...|.+|+|||++|+.++|.++|+++..+.+ ...++|+|..+..+
T Consensus 403 --~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~~~~--~~~~~f~p~m~~~~ 478 (499)
T COG0554 403 --LTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELW--PLDKEFEPGMDEEE 478 (499)
T ss_pred --ceeEEEcCccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHHhhh--cccceeCCCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999996555 67899999999888
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 046958 395 RKKKAESQCRAVERTFNLAD 414 (417)
Q Consensus 395 ~y~~y~~~~~~~~~~~~~~~ 414 (417)
+-++|..|++++++.+.|..
T Consensus 479 r~~~y~~W~~AV~rs~~~~~ 498 (499)
T COG0554 479 REELYAGWKKAVKRSLGWRK 498 (499)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 88999999999999998864
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-69 Score=556.81 Aligned_cols=375 Identities=24% Similarity=0.337 Sum_probs=325.7
Q ss_pred Ccccccc--ccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEE
Q 046958 12 PKVNTNL--GFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLM 79 (417)
Q Consensus 12 ~~~~~~~--~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 79 (417)
+++...+ |.+|+|+.|+++|+|.|..++++++ +.+|+...+.++++||+|+++|+|+ .++++.+|
T Consensus 75 ~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~ 151 (481)
T TIGR01312 75 GQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPE---VFARIAKV 151 (481)
T ss_pred cCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChH---HHHHhhee
Confidence 3444555 7789999999999999997765544 2568888899999999999999997 78999999
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCC
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPI 153 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~ 153 (417)
++++|||.|+||| +.++|+|+||+|||||+++++|++++|+.+||++++||+|+++++++|++++ | |+
T Consensus 152 ~~~~~yi~~~LtG-----~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~G-l~ 225 (481)
T TIGR01312 152 MLPKDYLRYRLTG-----EYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLG-LS 225 (481)
T ss_pred eCchHHHhhhhcC-----CeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhC-CC
Confidence 9999999999999 8999999999999999999999999999999999999999999999999973 6 88
Q ss_pred CCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh--
Q 046958 154 TGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE-- 223 (417)
Q Consensus 154 ~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~-- 223 (417)
+|+||++|++|++|+++|+|+ ++|++++++|||+++..+++ .+..++.+....++|.... ...++..++
T Consensus 226 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~ 304 (481)
T TIGR01312 226 AGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTD-KPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWF 304 (481)
T ss_pred CCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecC-CcccCcccceeeeeeecCCceEEEeEehhhHHHHHHH
Confidence 999999999999999999999 99999999999999877664 4455444433334443210 111222232
Q ss_pred -hhcCCCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046958 224 -DSLGIISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301 (417)
Q Consensus 224 -~~~~~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l 301 (417)
+.|+. .+|++|++++++++ ++++++|+|||.|+|.|+||+.+||+|+|++.+|+++|++||++||+||.+|++++.|
T Consensus 305 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l 383 (481)
T TIGR01312 305 RELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDIL 383 (481)
T ss_pred HHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442 46888999888875 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccC
Q 046958 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTK 381 (417)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~ 381 (417)
++..|.+ +++|+++||++||+.|+|++|||+|+||++++..|++++|||++|+.++|.+++++++.+.+ .+
T Consensus 384 ~~~~~~~--------~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~-~~ 454 (481)
T TIGR01312 384 REAGGIP--------IQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAV-VK 454 (481)
T ss_pred HHhcCCC--------cceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhc-cC
Confidence 8744566 89999999999999999999999999999999999999999999999999999999987777 47
Q ss_pred CCcEEeCCCCHHHHH-HHHHHHHHHH
Q 046958 382 TSTTFKPLLNEEFRK-KKAESQCRAV 406 (417)
Q Consensus 382 ~~~~~~P~~~~~~~y-~~y~~~~~~~ 406 (417)
..++|+|++++++.| ++|++|+++|
T Consensus 455 ~~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 455 QTESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred CCceECCCHHHHHHHHHHHHHHHHHh
Confidence 788999999999999 5799999875
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=560.23 Aligned_cols=375 Identities=20% Similarity=0.213 Sum_probs=312.9
Q ss_pred ccccCCccc---------ccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEE
Q 046958 17 NLGFIFFPL---------GPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLM 79 (417)
Q Consensus 17 ~~~~~g~pl---------~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 79 (417)
.+|.+|+|| +|+|+|+|.|+.+++++++ ++|+++++.++++||+|+++|+|+ +++++.+|
T Consensus 83 ~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~~~ 159 (541)
T TIGR01315 83 VLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPP---ELFARCKF 159 (541)
T ss_pred EEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChH---HHHHhhhh
Confidence 367788888 8999999999999976653 679999999999999999999997 89999999
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhccccc---CCCCCCCHHHHHhcCCCC---CCC----CCccccCcceee-ec
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMN---LKTLDWDKPTLETLGIPA---EIR----PKIVSNSEIIGK-IG 148 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~gi~~---~~L----P~i~~~~~~~G~-v~ 148 (417)
++++|||.|+||| +.++|+++++.+++|| +++++||+++++.+||+. ++| |+++++++++|. |+
T Consensus 160 l~~~dyl~~~LTG-----~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~~v~ 234 (541)
T TIGR01315 160 FDLTDFLTWRATG-----KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLT 234 (541)
T ss_pred cchhhhheeeeec-----chhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccccccC
Confidence 9999999999999 8999999999999998 699999999999999984 234 999999999999 87
Q ss_pred c------CCCCCCCcEEeccchHHHhHhcCc---C-CCC-------ceEEeccCcceeeeecCcceeccCCCceeee-ce
Q 046958 149 K------GCPITGIPISGCLGNQHAAMLGQA---C-KKG-------EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-AF 210 (417)
Q Consensus 149 ~------g~l~~g~pV~~g~~D~~aa~lg~g---~-~~g-------~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-~~ 210 (417)
+ | |++|+||++|++|++|+++|+| . ++| ++.+++|||+++..+.+ .+..++ +.+..+ ++
T Consensus 235 ~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~-~~~~~~-~~~~~~~~~ 311 (541)
T TIGR01315 235 AEAAQELG-LPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTK-GPVFVP-GVWGPYRDA 311 (541)
T ss_pred HHHHHHhC-CCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecC-CCccCC-ceeecccCc
Confidence 3 6 8999999999999999999995 3 555 88999999998776553 343333 232111 11
Q ss_pred ------ec-CCCCCchhhhh---hhcCC------------CCcHHHHHHH----HHhcC-C-----CCCeEEccccCCCC
Q 046958 211 ------KL-GPKAPTNYALE---DSLGI------------ISNASEIEEL----ALRVN-S-----TGGIYFVRAFNGLL 258 (417)
Q Consensus 211 ------~~-g~~~~~~~~l~---~~~~~------------~~~~~~l~~~----a~~~~-~-----~~gl~flP~l~Ger 258 (417)
.. +....++.+++ +.++. .+.|+.|++. +++.+ + ++|++|+|||.|||
T Consensus 312 ~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r 391 (541)
T TIGR01315 312 LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNR 391 (541)
T ss_pred cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCc
Confidence 11 11112222232 22221 1236545443 44443 3 37999999999999
Q ss_pred CCCCCCCCceEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHH
Q 046958 259 APWWRDDARSVCIGITRFTSK---AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQI 335 (417)
Q Consensus 259 ~P~~~~~~rg~~~Gl~~~~~~---~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~ 335 (417)
+|+|||++||+|+||+.+|++ +||+||++|||||++|++++.|++ .|.+ +++|+++||++||+.|+||
T Consensus 392 ~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~--------~~~i~~~GGga~s~~w~Qi 462 (541)
T TIGR01315 392 SPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHT--------IKSIFMSGGQCQNPLLMQL 462 (541)
T ss_pred CCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------ccEEEEecCcccCHHHHHH
Confidence 999999999999999999999 899999999999999999999987 5777 8999999999999999999
Q ss_pred HHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHH-HHHH-HHHHHHHHHHHHhcc
Q 046958 336 QADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEE-FRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 336 ~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~y~-~y~~~~~~~~~~~~~ 412 (417)
+|||+|+||++++..|++++|||++|++++|.++|++++.+.+. +..++|+|+++++ +.|+ +|++|+++|++++.|
T Consensus 463 ~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 463 IADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMS-KPGKTVWPRGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhc-cCCcEEcCCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998877773 6788999999998 9895 799999999888766
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=542.33 Aligned_cols=375 Identities=23% Similarity=0.236 Sum_probs=315.9
Q ss_pred ccccCCcccccccccCCcccHHHHHhh------------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhh
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV------------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDT 84 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~------------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~d 84 (417)
.+|.+|+||.+ ++|+|.|+.++++++ +++|.++ +.++++||+|+++|+|+ +++++.+|++++|
T Consensus 89 ~~D~~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe---~~~~~~~~~~~~d 163 (520)
T PRK10939 89 LYDRNGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPD---IYRQAHTITMISD 163 (520)
T ss_pred EECCCCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcH---HHHHhheEechhH
Confidence 47789999976 689999999997654 2567654 67899999999999997 8999999999999
Q ss_pred HHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcE
Q 046958 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPI 158 (417)
Q Consensus 85 yi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV 158 (417)
||.|+||| ++++|+|+||+|||||+++++|++++++.+||+.++||+|+++++++|.|++ | |++|+||
T Consensus 164 yl~~~LTG-----~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~~G-L~~g~pV 237 (520)
T PRK10939 164 WIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAETG-LRAGTPV 237 (520)
T ss_pred hhhheeeC-----ceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHhhC-CCCCCcE
Confidence 99999999 8999999999999999999999999999999999999999999999999973 6 8999999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceec------CC-CC----Cchhhhhhhc
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKL------GP-KA----PTNYALEDSL 226 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~------g~-~~----~~~~~l~~~~ 226 (417)
++|++|++|+++|+|+ ++|++++++|||+++..+++. +..++......+++.. +. .. ...|.. +.|
T Consensus 238 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~-~~~ 315 (520)
T PRK10939 238 VMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPA-PVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFR-DAF 315 (520)
T ss_pred EEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccc-cccCccccceeceeeeCCcceEeeeeccceeeeehHH-hhh
Confidence 9999999999999999 999999999999987666643 3333322111122211 00 00 111222 223
Q ss_pred CC----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCC---CHHHHHHHHHHHHHH
Q 046958 227 GI----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFT---SKAHFARAVLESMCF 292 (417)
Q Consensus 227 ~~----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~---~~~~l~rAvlEgia~ 292 (417)
.. .+.|++|+++++++| +++++ +|||.|+|.|.+++++||+|+||+.+| +++||+||++|||||
T Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvlEgia~ 393 (520)
T PRK10939 316 CAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALEENAAI 393 (520)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHHHHHHH
Confidence 21 135888999888875 77777 699999987655568999999999987 899999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHH
Q 046958 293 LVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEE 372 (417)
Q Consensus 293 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~ 372 (417)
.+|++++.|++..|.+ +++|+++||+++|+.|+||+|||+|+||++++..|++++|||++|++++|.++|++
T Consensus 394 ~~~~~l~~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~ 465 (520)
T PRK10939 394 VSACNLQQIAAFSGVF--------PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLA 465 (520)
T ss_pred HHHHHHHHHHHhcCCC--------CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHH
Confidence 9999999998744766 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhccccc
Q 046958 373 IFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNLADL 415 (417)
Q Consensus 373 ~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~ 415 (417)
++.+.+. +..++|+|++++++.| ++|++|+++|++++.+.+.
T Consensus 466 ~a~~~~~-~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~~~ 508 (520)
T PRK10939 466 ETGERLV-RWERTFEPNPENHELYQEAKEKWQAVYADQLGLVDH 508 (520)
T ss_pred HHHHHHc-ccCceECcCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9877774 6789999999999999 5799999999988777653
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-66 Score=541.19 Aligned_cols=378 Identities=17% Similarity=0.150 Sum_probs=315.6
Q ss_pred ccccCCcccc-----------cccccCCcccHHHHHhhh------------hh-ccccccccchHHHHhhhhcCCCcccc
Q 046958 17 NLGFIFFPLG-----------PSEHWAGFRLVVENRTVQ------------WR-SNKMVPVQRIPELTRSRQQTASSEGE 72 (417)
Q Consensus 17 ~~~~~g~pl~-----------p~i~W~D~R~~~~~~~~~------------~~-G~~~~~~~~~~kl~wl~~~~p~~~~~ 72 (417)
.+|.+|+||+ |+|+|+|.|+.+++++++ ++ |+.+++.++++||+|+++|+|+ .
T Consensus 94 ~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~---~ 170 (548)
T PRK04123 94 PVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPA---V 170 (548)
T ss_pred EECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHHHHhhCHH---H
Confidence 4667788887 999999999999976552 23 7788888999999999999997 7
Q ss_pred cccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCC-CCCCCHHHHHhcC------CCCCCCCCccccCccee
Q 046958 73 TLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLK-TLDWDKPTLETLG------IPAEIRPKIVSNSEIIG 145 (417)
Q Consensus 73 ~~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g------i~~~~LP~i~~~~~~~G 145 (417)
++++.+|++++|||.|+|||.....+.++|.|+++.+++||.+ ++.||+++|+.+| |+.++||+|+++++++|
T Consensus 171 ~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP~l~~~g~~~G 250 (548)
T PRK04123 171 YEAAASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKLFTETWTAGEPAG 250 (548)
T ss_pred HHHHhHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhcCCccccCCCccc
Confidence 8999999999999999999932222456899999999999999 5666999999996 88899999999999999
Q ss_pred eecc------CCCCCCCcEEeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeee-------ceec
Q 046958 146 KIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-------AFKL 212 (417)
Q Consensus 146 ~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 212 (417)
.|++ | |++|+||++|++|++|+++|+|+++|++++++|||+++..+++ ++.. ..++...+ .|..
T Consensus 251 ~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 327 (548)
T PRK04123 251 TLTAEWAQRLG-LPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLAD-KQRA-VPGICGQVDGSIVPGLIGY 327 (548)
T ss_pred ccCHHHHHHhC-CCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecC-Cccc-cCceeecccCcccCCeeee
Confidence 9974 6 8999999999999999999999978999999999998876664 3322 11221110 0111
Q ss_pred -CCCCCchhhhh---hhcCC-----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCC
Q 046958 213 -GPKAPTNYALE---DSLGI-----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRF 276 (417)
Q Consensus 213 -g~~~~~~~~l~---~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~ 276 (417)
+....++.+++ +.++. ...|++|+++++++| ++++++|+|||.|||+|+|||++||.|+||+.+
T Consensus 328 ~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~ 407 (548)
T PRK04123 328 EAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLG 407 (548)
T ss_pred cccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCCCCCCCCCCceEEECCCCC
Confidence 11111222221 23321 135788998888874 889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-cccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA-TVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
|+++||+||++||++|.++++++.|++ .|.+ +++|+++||+ +||++|+||+|||||+||++++..|++++
T Consensus 408 ~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~--------~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~al 478 (548)
T PRK04123 408 TDAPDIYRALIEATAFGTRAIMECFED-QGVP--------VEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPAL 478 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchH
Confidence 999999999999999999999999997 5766 8999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHH
Q 046958 356 GAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERT 409 (417)
Q Consensus 356 GaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~ 409 (417)
|||++|++++|.++|++++.+.+.....++|+|+++.++.| ++|++|+++++..
T Consensus 479 GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 479 GAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887766334567899999999999 5799999998876
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=538.51 Aligned_cols=376 Identities=16% Similarity=0.136 Sum_probs=318.0
Q ss_pred ccccCCccccc-----------ccccCCcccHHHHHhhh------------hhccccccccchHHHHhhhhcCCCccccc
Q 046958 17 NLGFIFFPLGP-----------SEHWAGFRLVVENRTVQ------------WRSNKMVPVQRIPELTRSRQQTASSEGET 73 (417)
Q Consensus 17 ~~~~~g~pl~p-----------~i~W~D~R~~~~~~~~~------------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~ 73 (417)
.+|.+|+||+| +|+|+|+|+.+++++++ ++|+++++.++++||+|+++|+|+ .+
T Consensus 97 ~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe---~~ 173 (536)
T TIGR01234 97 PIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPA---IY 173 (536)
T ss_pred EECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHHHHHHHhhChH---HH
Confidence 46788999983 99999999999986552 468889999999999999999997 88
Q ss_pred ccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCC------CCCCCCCccccCcceeee
Q 046958 74 LDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI------PAEIRPKIVSNSEIIGKI 147 (417)
Q Consensus 74 ~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi------~~~~LP~i~~~~~~~G~v 147 (417)
+++.+|++++|||.|+||| +.++|+|+|+.++++|.+.+.|++++++.+|+ +.++||+|+++++++|.|
T Consensus 174 ~~~~~~l~~~dyl~~~LTG-----~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i~~~g~~~G~v 248 (536)
T TIGR01234 174 QAADRWIELADWIVAQLSG-----DIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTDIWTAGEPAGTL 248 (536)
T ss_pred HHHhhhcCHHHHHHHHHhC-----CccccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCceecCCCccccc
Confidence 9999999999999999999 89999999999998877666669999999985 788999999999999999
Q ss_pred cc------CCCCCCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeee-------ceec-
Q 046958 148 GK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-------AFKL- 212 (417)
Q Consensus 148 ~~------g~l~~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-------~~~~- 212 (417)
++ | |++|+||++|++|++|+++|+|+ ++|++++++|||+++..+.+ ++.. ..++...+ .|..
T Consensus 249 ~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 325 (536)
T TIGR01234 249 TPEWAQRTG-LPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGD-KQRA-VPGMCGVVDGGIVPGFIGYE 325 (536)
T ss_pred CHHHHHHhC-CCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecC-cccc-CCceeeeccCcccCCeeEEe
Confidence 74 6 89999999999999999999999 99999999999998776553 3322 22221100 0111
Q ss_pred CCCCCchhhhh---hhcCC-----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCC
Q 046958 213 GPKAPTNYALE---DSLGI-----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFT 277 (417)
Q Consensus 213 g~~~~~~~~l~---~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~ 277 (417)
+....++.+++ +.+.. .+.|+.|++.+++.| ++++|+|+|||.|||+|+||+++||.|+||+.+|
T Consensus 326 ~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~ 405 (536)
T TIGR01234 326 AGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLAT 405 (536)
T ss_pred ccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCCCCCcceEEEECCCCCC
Confidence 11111222221 22311 124788888887775 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-cccHHHHHHHHHhhCCcEEccCCCChhHHH
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA-TVNNLLMQIQADLLGSPVLRPADIESTALG 356 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~pv~~~~~~e~salG 356 (417)
+++||+|||+|||||.+|++++.|++ .|.+ +++|+++||+ ++|++|+||+|||+|+||+++...|++++|
T Consensus 406 ~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~--------~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~G 476 (536)
T TIGR01234 406 DAPLLYRALIEATAFGTRMIMETFTD-SGVP--------VEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALG 476 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--------cceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHH
Confidence 99999999999999999999999987 5777 8999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 357 AAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 357 aAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
||++|++++|.+++++++...+.....++|+|++++++.| ++|++|+++|++.-+|
T Consensus 477 aA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~ 533 (536)
T TIGR01234 477 AAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYARYQELAMSFGQY 533 (536)
T ss_pred HHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999886776324588999999999989 5799999999887554
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=533.82 Aligned_cols=352 Identities=21% Similarity=0.232 Sum_probs=298.9
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|+|+.+++++++ ++|+++.+.++++||+|+++|+|+ +++++.+|++++|||
T Consensus 86 ~~D~~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~---~~~~~~~~l~~~dyl 162 (470)
T PRK10331 86 LVDKQGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQ---LLEQAHAWLFISSLI 162 (470)
T ss_pred EECCCcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHH---HHHHhhhhcCHHHHH
Confidence 5788999999999999999999876552 568888888999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| ++++|+|+||.|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 163 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~~G-L~~g~pV~~ 236 (470)
T PRK10331 163 NHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAALLG-LPVGIPVIS 236 (470)
T ss_pred HHhhcC-----ccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHHhC-CCCCCeEEE
Confidence 999999 8999999999999999999999999999999999999999999999999973 6 899999999
Q ss_pred ccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCC----Cceeeec-----eecCC-CCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKH----GLLSTLA-----FKLGP-KAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~----g~~~~~~-----~~~g~-~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+.+|++++++|||.++..+++ +|..+.. +....+. |..+. ...+. +++ +.|+
T Consensus 237 g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~ 314 (470)
T PRK10331 237 AGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSA-QVDTSLLSQYAGSTCELDSQSGLYNPGMQWLASG-VLEWVRKLFW 314 (470)
T ss_pred ccccHHHHHhCCCCCCCCEEEecchhhhheeecC-CCcccccccccccceeccccCceeeechhhHHHH-HHHHHHHHhc
Confidence 9999999999999977899999999998776554 3333221 2111110 10000 00000 111 3343
Q ss_pred C-CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046958 228 I-ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305 (417)
Q Consensus 228 ~-~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 305 (417)
. ...|+.|+++++++| ++++++|+|+|.|+| ||+|+||+.+|+++||+||++|||||++|++++.|++..
T Consensus 315 ~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 386 (470)
T PRK10331 315 TAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVLEKIG 386 (470)
T ss_pred ccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 246899999888774 889999999999888 899999999999999999999999999999999998743
Q ss_pred cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcE
Q 046958 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTT 385 (417)
Q Consensus 306 g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~ 385 (417)
+.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+. +..++
T Consensus 387 ~~~--------~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~-~~~~~ 457 (470)
T PRK10331 387 HFK--------ASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMK-YQYRY 457 (470)
T ss_pred CCC--------CceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHh-hccee
Confidence 456 899999999999999999999999999999999999999999999999999999999877773 56789
Q ss_pred EeCCCCHHHHHH
Q 046958 386 FKPLLNEEFRKK 397 (417)
Q Consensus 386 ~~P~~~~~~~y~ 397 (417)
|+|+ .+.+.|+
T Consensus 458 ~~P~-~~~~~y~ 468 (470)
T PRK10331 458 FYPQ-TEPEFIE 468 (470)
T ss_pred ECCC-ccHhhhh
Confidence 9999 5566664
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=523.05 Aligned_cols=378 Identities=27% Similarity=0.372 Sum_probs=323.6
Q ss_pred cccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhH
Q 046958 16 TNLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTW 85 (417)
Q Consensus 16 ~~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dy 85 (417)
..||.+|+||+|+|+|+|.|+.++++++. .+|.++.+.++++||+|+++|+|+ .++++.+|++++||
T Consensus 88 vllD~~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~---~~~k~~~il~~~dy 164 (502)
T COG1070 88 VLLDANGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPD---LFAKAAKILLIKDY 164 (502)
T ss_pred EEECCCCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcH---HHHhhhheechHHH
Confidence 46899999999999999999999988764 468889999999999999999997 89999999999999
Q ss_pred HHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCC-CCCCCccccCcceeeecc------CCCCCCCcE
Q 046958 86 LIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EIRPKIVSNSEIIGKIGK------GCPITGIPI 158 (417)
Q Consensus 86 i~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~-~~LP~i~~~~~~~G~v~~------g~l~~g~pV 158 (417)
|.|+||| ++++|+|+||+|+|||++++.|+.++|+.+|+++ ++||+|+++++++|.|++ | |++++||
T Consensus 165 l~~rLTG-----~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A~~~G-l~~~~pV 238 (502)
T COG1070 165 LRYRLTG-----EFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELG-LPAGTPV 238 (502)
T ss_pred HHHHHhC-----CcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHHHHhC-CCCCCeE
Confidence 9999999 9999999999999999999999999999999995 999999999999999984 6 9999999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeecee-------cCCCCCchhhhh---hhcC
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFK-------LGPKAPTNYALE---DSLG 227 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~~~~~~~l~---~~~~ 227 (417)
++|+||++++++|+|+ ++|++..++||+.++...++. +..++.+...++++. .+....+.+.++ +.++
T Consensus 239 ~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~ 317 (502)
T COG1070 239 VVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDK-PLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFG 317 (502)
T ss_pred EECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccc-cccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhc
Confidence 9999999999999999 999999999999998876653 566555554444432 222223445554 4444
Q ss_pred CCCcHHHHHHHHHhc---CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 228 IISNASEIEELALRV---NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~---~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
...++.++...+... +++.++.|+|||.|||.|++++..||.|+|++..|+++|++||++||++|.+++.++.|++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~ 397 (502)
T COG1070 318 LAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEEL 397 (502)
T ss_pred cccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432444443333322 36789999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCC-CCHHHHHhccccCCC
Q 046958 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVF-KEEEIFASSERTKTS 383 (417)
Q Consensus 305 ~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~-~~~~~~~~~~~~~~~ 383 (417)
.|.+ +++|+++||++||++|+||+||++|+||+++...|++++|+|++++.+.+.+ ++.+++.+.+ ...
T Consensus 398 ~g~~--------~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~--~~~ 467 (502)
T COG1070 398 GGKP--------PSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAV--VDA 467 (502)
T ss_pred cCCC--------ccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcc--ccc
Confidence 6877 8899999999999999999999999999999889999899999888887654 4456665554 237
Q ss_pred cEEeCCCCHHHHHH-HHHHHHHHHHHHhccc
Q 046958 384 TTFKPLLNEEFRKK-KAESQCRAVERTFNLA 413 (417)
Q Consensus 384 ~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~~ 413 (417)
+++.|+++..+.|+ +|++|++.|++++...
T Consensus 468 ~~~~p~~~~~~~y~~~~~~~~~~y~~~~~~~ 498 (502)
T COG1070 468 RRIIPDPERAAAYQELYERYRALYQALLALY 498 (502)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 6799999999988754
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=522.56 Aligned_cols=365 Identities=18% Similarity=0.158 Sum_probs=303.0
Q ss_pred ccccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.||.+|+||+|+|+|+|.|+.++++++ +++|+++.+.++++||+|+++|+|+ .++++.+|++++|||
T Consensus 70 ~lD~~G~pL~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~l~~~dyl 146 (471)
T PRK10640 70 LLDKQGQRVGLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPE---LIAQVAHALLIPDYF 146 (471)
T ss_pred EECCCCCCcCCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChH---HHHHhhHeecHHHHH
Confidence 478899999999999999999987654 3679999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEe-ccchH
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISG-CLGNQ 165 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~-g~~D~ 165 (417)
.|+||| +.++|+|+||+|+|||+++++||+++++.+||+.++||+|+++++++|.++.. +..|+||++ |++|+
T Consensus 147 ~~~LTG-----~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~-~g~g~pVv~~g~~D~ 220 (471)
T PRK10640 147 SYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDT 220 (471)
T ss_pred HHHHhC-----CcceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecc-cCCCCCEEEeCCCcH
Confidence 999999 89999999999999999999999999999999999999999999999999765 447999998 68999
Q ss_pred HHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeece--------ecCCCCCchhhhhhhcC---CCCcHH
Q 046958 166 HAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF--------KLGPKAPTNYALEDSLG---IISNAS 233 (417)
Q Consensus 166 ~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~--------~~g~~~~~~~~l~~~~~---~~~~~~ 233 (417)
+|+++|+|+ ++|++++|+|||+++...++ .|..++.++...+.+ ..-....+.|..+ .++ ....|+
T Consensus 221 ~aa~~g~g~~~~g~~~~s~GT~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~W~~~-~~~~~~~~~~~~ 298 (471)
T PRK10640 221 ASAVIASPLNDSDAAYLSSGTWSLMGFESQ-TPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQ-RVLQERQITDLP 298 (471)
T ss_pred HHHhhccCCCCCCeEEEEeccHhhhheecC-CCcCCHHHHHhccCccCCCCceEEEecchhHHHHHH-HHHHHhccCCHH
Confidence 999999999 99999999999998776664 444433221111111 0000012245443 221 124688
Q ss_pred HHHHHHHhcCCCCCeEEccccCCCCCCCCCC-CCceEEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046958 234 EIEELALRVNSTGGIYFVRAFNGLLAPWWRD-DARSVCIGITRFT------SKAHFARAVLESMCFLVKDVLDSKQKDAV 306 (417)
Q Consensus 234 ~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~-~~rg~~~Gl~~~~------~~~~l~rAvlEgia~~~~~~~~~l~~~~g 306 (417)
++.++++++|++++++ +| .|+|. +|| ++||+|+|++..| +++||+|||+||+||.+|++++.|++..+
T Consensus 299 ~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g 373 (471)
T PRK10640 299 ALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELAQLRG 373 (471)
T ss_pred HHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888888888887 58 79994 675 8999997766655 99999999999999999999999987446
Q ss_pred ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccC--CCc
Q 046958 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTK--TST 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~--~~~ 384 (417)
.+ +++|+++||++||++|+||+|||+|+||+..+. |++++|||++|++++|.+++++++ +++... ..+
T Consensus 374 ~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~ 443 (471)
T PRK10640 374 EP--------FSQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLT 443 (471)
T ss_pred CC--------cceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCce
Confidence 66 799999999999999999999999999988764 899999999999999999999988 555321 578
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHH
Q 046958 385 TFKPLLNEEFRKKKAESQCRAVER 408 (417)
Q Consensus 385 ~~~P~~~~~~~y~~y~~~~~~~~~ 408 (417)
+|+|+++ .+..++|.+|+++++.
T Consensus 444 ~~~P~~~-~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 444 TFTPNPD-SEIARHVAQFQSLRQT 466 (471)
T ss_pred EEcCCCh-HHHHHHHHHHHHHhcc
Confidence 9999988 2344578888888765
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=511.64 Aligned_cols=345 Identities=20% Similarity=0.223 Sum_probs=291.5
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|+|+.++++++. ++|+++.+.++++|++|+++|+|+ +++++.+|++++|||
T Consensus 85 ~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe---~~~~~~~~l~~~dyl 161 (465)
T TIGR02628 85 PFDKQGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQ---LFERMHKFVFISSMI 161 (465)
T ss_pred EECCCCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChH---HHHHHHHhhCcHHHH
Confidence 5788999999999999999999876552 678888888999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.|++ | |++|+||++
T Consensus 162 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~G-l~~g~pV~~ 235 (465)
T TIGR02628 162 THRLTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLG-LPVGVPVIS 235 (465)
T ss_pred HHHHhC-----CcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHhC-CCCCCCEEe
Confidence 999999 8999999999999999999999999999999999999999999999999973 6 889999999
Q ss_pred ccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeece---------ecCC-CCCc---hhhhhhhcC
Q 046958 161 CLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF---------KLGP-KAPT---NYALEDSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~---------~~g~-~~~~---~~~l~~~~~ 227 (417)
|++|++|+++|+|+.+|++++++|||+++...++ +|..+..+.+..+.+ ..+. ...+ .|.. +.|.
T Consensus 236 g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~W~~-~~~~ 313 (465)
T TIGR02628 236 AGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQ-QVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASGVLEWVR-KLFF 313 (465)
T ss_pred cCccHHHHHhccCCCCCcEEEeccchhhheeccC-cCCCCccccccccccccccCCceeeehhhhhhhhHHHHHH-HHhc
Confidence 9999999999999977899999999998765553 444443332211111 0000 0001 1211 2332
Q ss_pred C-----CCcHHHHHHHHHhc-CCCCCeE-EccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046958 228 I-----ISNASEIEELALRV-NSTGGIY-FVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300 (417)
Q Consensus 228 ~-----~~~~~~l~~~a~~~-~~~~gl~-flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~ 300 (417)
. .+.|++|++.++++ |++++++ |+|++. |.+||+|+||+.+|+++||+||++|||||.+|++++.
T Consensus 314 ~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~ 385 (465)
T TIGR02628 314 TAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQM 385 (465)
T ss_pred chhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01268889888887 4788998 888862 5689999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhcccc
Q 046958 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERT 380 (417)
Q Consensus 301 l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~ 380 (417)
|++..+.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+.
T Consensus 386 l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~- 456 (465)
T TIGR02628 386 LEQIGQFK--------ASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMH- 456 (465)
T ss_pred HHHhcCCC--------cceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhh-
Confidence 98732456 899999999999999999999999999999999999999999999999999999999877773
Q ss_pred CCCcEEeCC
Q 046958 381 KTSTTFKPL 389 (417)
Q Consensus 381 ~~~~~~~P~ 389 (417)
+..++|+|+
T Consensus 457 ~~~~~~~P~ 465 (465)
T TIGR02628 457 PQYRYFYPQ 465 (465)
T ss_pred ccceeeCCC
Confidence 568889996
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=484.81 Aligned_cols=381 Identities=15% Similarity=0.119 Sum_probs=306.7
Q ss_pred ccccCCCCccccccccCCccc---------ccccccCCcccHHHHHhhh-----------hhccccccccchHHHHhhhh
Q 046958 5 WTWNLDSPKVNTNLGFIFFPL---------GPSEHWAGFRLVVENRTVQ-----------WRSNKMVPVQRIPELTRSRQ 64 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~g~pl---------~p~i~W~D~R~~~~~~~~~-----------~~G~~~~~~~~~~kl~wl~~ 64 (417)
+-|++++++.-.+||.+|+++ +|+++|+|+|+.+++++++ +||.+.++.++.+||+|+++
T Consensus 103 v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG~~~~~~~t~~ki~wl~~ 182 (556)
T PLN02669 103 VYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTGSRAYERFTGPQIRKIYE 182 (556)
T ss_pred EEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHCCcccccccHHHHHHHHH
Confidence 468888899989999999754 6999999999999986552 57889999999999999999
Q ss_pred cCCCcccccccceEEechhhHHHHHHhCCCCCceE-EechhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCc
Q 046958 65 QTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLH-VTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSE 142 (417)
Q Consensus 65 ~~p~~~~~~~~~~~~~~~~dyi~~~LTG~~~~~~~-~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~ 142 (417)
|+|+ +++++.+|+.++|||.|+||| +. .+|+|+||+|+|||+++++||+++|+.++++ .++||+++++++
T Consensus 183 ~~Pe---~y~~t~~i~~~~dyl~~~LtG-----~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~~~Lp~~~~~~~ 254 (556)
T PLN02669 183 TQPE---VYHDTERISLVSSFMASLLVG-----DYASIDETDGAGMNLMDIEKRCWSKAALEATAPGLEEKLGKLAPAHA 254 (556)
T ss_pred hChH---HHHHHHhhccHHHHHHHhhcC-----CCccccchhhhhhhhhccccCCcCHHHHHhhCccHHHHCcCCCCCCc
Confidence 9997 899999999999999999999 74 6999999999999999999999999999654 379999999999
Q ss_pred ceeeecc------CCCCCCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC--
Q 046958 143 IIGKIGK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG-- 213 (417)
Q Consensus 143 ~~G~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g-- 213 (417)
++|+|++ | |++||||++|++|++|+++|+|+ ++|++.+|+|||+++.++++ .+.+++.+.. ++|...
T Consensus 255 ~~G~v~~~~a~~~G-l~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 330 (556)
T PLN02669 255 VAGKIHPYFVQRFG-FSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITR-EPQPSLEGHV--FPNPVDPE 330 (556)
T ss_pred ceeeeCHHHHHHhC-CCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecC-CCCCCCCcce--eeCccCCC
Confidence 9999974 6 99999999999999999999999 99999999999998877664 3444443322 332210
Q ss_pred ------CCCCchhhhh---hhcCCCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCC----CCCCCceEEEcCCCC---
Q 046958 214 ------PKAPTNYALE---DSLGIISNASEIEELALRVN-STGGIYFVRAFNGLLAPW----WRDDARSVCIGITRF--- 276 (417)
Q Consensus 214 ------~~~~~~~~l~---~~~~~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~----~~~~~rg~~~Gl~~~--- 276 (417)
....+..+++ +.++ ..+|+.+++++++.| +++|++++||+.||+.|+ +++.++|.|+|++..
T Consensus 331 ~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~ 409 (556)
T PLN02669 331 SYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLV 409 (556)
T ss_pred CeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCccchhhhccccCccccccc
Confidence 0012223333 3443 246888999888774 788999899999999996 567788999999887
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCC
Q 046958 277 ------TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI 350 (417)
Q Consensus 277 ------~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~ 350 (417)
|+++|++||++||++|++|.+++.|.. +.+ +++|+++||+++|+.|+||+|||||+||++++..
T Consensus 410 ~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~~--~~~--------~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ 479 (556)
T PLN02669 410 EEEVGEFDPPSEVRAIIEGQFLSMRAHAERFGM--PVP--------PKRIIATGGASANQSILKLIASIFGCDVYTVQRP 479 (556)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhC--CCC--------CcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC
Confidence 799999999999999999999999963 455 7999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCC-------HHHHHhcccc--CCCcEE--eCCC-CHHHHH-HHHHHHHHHHHHHh
Q 046958 351 ESTALGAAFAAGLAIGVFKE-------EEIFASSERT--KTSTTF--KPLL-NEEFRK-KKAESQCRAVERTF 410 (417)
Q Consensus 351 e~salGaAllA~~~~G~~~~-------~~~~~~~~~~--~~~~~~--~P~~-~~~~~y-~~y~~~~~~~~~~~ 410 (417)
|++++|||++|+++. +.+ +++..+.... .....+ +|.+ +..+.| .+.++|.++-+.+.
T Consensus 480 ea~alGAA~~A~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 550 (556)
T PLN02669 480 DSASLGAALRAAHGW--LCNEQGSFVPISCLYEGKLEATSLSCKLAVKAGDQELLSQYGLLMKKRMEIEQQLV 550 (556)
T ss_pred CchHHHHHHHHHHHH--hhhhhcccCChhhhcccccccCcccceeeccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999954 322 2221111100 112223 5555 455666 45666766665554
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-60 Score=484.51 Aligned_cols=334 Identities=20% Similarity=0.229 Sum_probs=277.0
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|.|+.+++++++ ++|+++.+.++++||+|+++|+|+ .++++++|+.++|||
T Consensus 82 ~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~l~~~dyl 158 (454)
T TIGR02627 82 LLDQNGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPD---LLEKVAHFLLIPDYL 158 (454)
T ss_pred EEcCCCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChh---HHHHHHHhCCHHHHH
Confidence 4677899999999999999999976652 579999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc-CCCCCCCcEEe-ccch
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK-GCPITGIPISG-CLGN 164 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-g~l~~g~pV~~-g~~D 164 (417)
.|+||| +.++|+|+||+|+|||+++++|++++++.+||+.++||+|+++++++|.+.. + + +|+||++ |++|
T Consensus 159 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~g-l-~g~pVv~~g~~D 231 (454)
T TIGR02627 159 NYRLTG-----KKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQ-G-NQIPVVAVATHD 231 (454)
T ss_pred HHheeC-----CceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeeccc-C-CCCCEEEECCch
Confidence 999999 8999999999999999999999999999999999999999999999999864 5 5 8999998 8899
Q ss_pred HHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeec--------eecCCCCCchhhhhhhcCC---CCcH
Q 046958 165 QHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLA--------FKLGPKAPTNYALEDSLGI---ISNA 232 (417)
Q Consensus 165 ~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~--------~~~g~~~~~~~~l~~~~~~---~~~~ 232 (417)
++|+++|+|+ ++|++++++|||.++...++ .|..++.+....+. |..-....+.|.++ .+.. ...|
T Consensus 232 ~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~-~~~~~~~~~~~ 309 (454)
T TIGR02627 232 TASAVVAAPLQGENAAYLSSGTWSLMGFESQ-TPITNEQALAANITNEGGADGRYRVLKNIMGLWLLQ-RVCRERDINDL 309 (454)
T ss_pred HHHHHhcCCCCCCCcEEEEEcHHHHhcccCC-CCCCCHHHHHhccccccccccEEEeecchhhhHHHH-HHHhhhccccH
Confidence 9999999999 99999999999988765553 44443322111111 10000012335443 2211 2356
Q ss_pred HHHHHHHHhcCCCCCeEEccccCCCCCCCCCCC-Cce------EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046958 233 SEIEELALRVNSTGGIYFVRAFNGLLAPWWRDD-ARS------VCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305 (417)
Q Consensus 233 ~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~-~rg------~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 305 (417)
+++.+.+..+|- +.|++.|++.|+|||. +++ .|+||+.+|+++||+||++|||||.+|++++.|++..
T Consensus 310 ~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~ 384 (454)
T TIGR02627 310 PALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYRQVLLELAELR 384 (454)
T ss_pred HHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667666654432 3366688999999995 544 4599999999999999999999999999999998744
Q ss_pred cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHh
Q 046958 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFAS 376 (417)
Q Consensus 306 g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~ 376 (417)
+.+ +++|+++||+++|++|+||+||++|+||+... .|++++|||++|++++|.+++++++.+
T Consensus 385 ~~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~ 446 (454)
T TIGR02627 385 GKP--------ISQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQ 446 (454)
T ss_pred CCC--------cCEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 666 89999999999999999999999999998765 779999999999999999999988833
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=463.61 Aligned_cols=382 Identities=38% Similarity=0.547 Sum_probs=327.6
Q ss_pred CCcccccccccCCcccHHHHHhhh------------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHH
Q 046958 21 IFFPLGPSEHWAGFRLVVENRTVQ------------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIW 88 (417)
Q Consensus 21 ~g~pl~p~i~W~D~R~~~~~~~~~------------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~ 88 (417)
.|+|+.++|.|+|+|+..++++++ .+|.++++.|..+||+|+++|.|+. ........+.+++|+.|
T Consensus 99 tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~--~~~~~~~~~~~~~~~tw 176 (516)
T KOG2517|consen 99 TGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEV--LKAKEEGGFDLGTFDTW 176 (516)
T ss_pred CCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHH--HHHHHhcccchhhhhhh
Confidence 367999999999999999998873 4689999999999999999999973 24555566666777766
Q ss_pred HHhCCCCCce-EEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccC-C-CCCCCcEEeccchH
Q 046958 89 SLTGGVNGDL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKG-C-PITGIPISGCLGNQ 165 (417)
Q Consensus 89 ~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g-~-l~~g~pV~~g~~D~ 165 (417)
++++...... +++|.+|||++++||..++.||..+++.+|+|.+.||++..+++++|.+..+ + +.+|+||.++.+|+
T Consensus 177 l~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~~~~~~~g~~vs~~lgDq 256 (516)
T KOG2517|consen 177 LATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAGDLGLLEGTPVSSCLGDQ 256 (516)
T ss_pred eeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccccccccccCcceeechhhH
Confidence 6665332233 6899999999999999999999999999999999999999999999999765 2 78999999999999
Q ss_pred HHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh--------------hhcCCCC
Q 046958 166 HAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIIS 230 (417)
Q Consensus 166 ~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~--------------~~~~~~~ 230 (417)
+|+++|..+ ++|+...++||+.++..+++..+.....|++.+..+..|..-+..|++| +.+++++
T Consensus 257 ~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~ 336 (516)
T KOG2517|consen 257 QASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIE 336 (516)
T ss_pred HHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHH
Confidence 999999999 9999999999999999888877777777888766666543222234444 3344445
Q ss_pred cHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 231 NASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 231 ~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
...++++++.++..+.+++|.|.|.|.|+|+|||++||.|+|++.+++..||.||++|+|||++|++|+.|++..+.+
T Consensus 337 ~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~-- 414 (516)
T KOG2517|consen 337 ELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHP-- 414 (516)
T ss_pred HHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 556677777777778999999999999999999999999999999999999999999999999999999999865467
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCC--CCCHHHHHhccccCCCcEEeC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGV--FKEEEIFASSERTKTSTTFKP 388 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~--~~~~~~~~~~~~~~~~~~~~P 388 (417)
+++++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|. +.+.+++. + ....++|.|
T Consensus 415 ------i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~-~~~~~~~~P 485 (516)
T KOG2517|consen 415 ------ISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--L-TGVGKVFRP 485 (516)
T ss_pred ------cceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--c-CCCcceecC
Confidence 999999999999999999999999999999999999999999999999998 66677764 2 378999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccccc
Q 046958 389 LLNEEFRKKKAESQCRAVERTFNLADL 415 (417)
Q Consensus 389 ~~~~~~~y~~y~~~~~~~~~~~~~~~~ 415 (417)
+.+...+..+|+.|+++++++++|...
T Consensus 486 ~~~~~~~~~ky~~w~~ave~~~~~~~~ 512 (516)
T KOG2517|consen 486 NIDDKLLDKKYQIWLKAVERQLGYRRI 512 (516)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhHHhh
Confidence 998733336899999999999998764
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=431.01 Aligned_cols=373 Identities=21% Similarity=0.235 Sum_probs=307.5
Q ss_pred cccCCcccccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHHH
Q 046958 18 LGFIFFPLGPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIWS 89 (417)
Q Consensus 18 ~~~~g~pl~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~~ 89 (417)
|..++..-.++|+|+|+|+.+|+++++ ..|+.+++++..|||+|+++|.|+ +++++.+|+.+.|||.|+
T Consensus 97 v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~---~~~~a~~~fdl~D~l~~~ 173 (544)
T COG1069 97 VLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPA---VWERAAHIFDLADWLTWK 173 (544)
T ss_pred cCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChH---HHHHhhhhhhHHHHHHHH
Confidence 333333333799999999999999986 458999999999999999999997 899999999999999999
Q ss_pred HhCCCCCceEEechhhhhhcccccC-CCCCCCHHHHHhcCCCC-----CCCC-CccccCcceeeecc------CCCCCCC
Q 046958 90 LTGGVNGDLHVTDVSNASRTMLMNL-KTLDWDKPTLETLGIPA-----EIRP-KIVSNSEIIGKIGK------GCPITGI 156 (417)
Q Consensus 90 LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~gi~~-----~~LP-~i~~~~~~~G~v~~------g~l~~g~ 156 (417)
||| ...-..+++..-..|.. +.+.|++++++.+|++. +.|| ++++.|+.+|.+++ | |++|+
T Consensus 174 ltG-----~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lG-L~~~~ 247 (544)
T COG1069 174 LTG-----SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELG-LPEGT 247 (544)
T ss_pred hhc-----chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCccccccCHHHHHHhC-CCCCc
Confidence 999 66666666665667777 55669999999999862 4466 68999999999985 6 99999
Q ss_pred cEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh------------
Q 046958 157 PISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE------------ 223 (417)
Q Consensus 157 pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~------------ 223 (417)
-|..|..|..|+++|++. .++.++..+|||+|.+..++ ++. .-.|+|.++.. ...|+.|..|
T Consensus 248 ~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~-~~~-~v~GvwGpy~~---ai~Pg~~~~EgGQSatG~l~dh 322 (544)
T COG1069 248 VVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE-KPR-FVPGVWGPYDG---AVLPGLWLYEGGQSATGDLLDH 322 (544)
T ss_pred EEeccceeccccccccccCCCCeEEEEeccceEEEEecC-Cce-ecCcccccccc---ccCcchhhhcccchhhhHHHHH
Confidence 999999999999999998 99999999999999887664 342 23577765432 2245555444
Q ss_pred --hhcC-------C-CC----cH-------HHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHH-
Q 046958 224 --DSLG-------I-IS----NA-------SEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKA- 280 (417)
Q Consensus 224 --~~~~-------~-~~----~~-------~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~- 280 (417)
+... . .. -| +.|.+...+. |..++++++|+|+|+|+|+.||++||+|+|++++|++.
T Consensus 323 l~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~ 402 (544)
T COG1069 323 LVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPES 402 (544)
T ss_pred HHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCCccceeEEeccccCCCcHH
Confidence 1110 0 01 11 2233333333 57899999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHH
Q 046958 281 --HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAA 358 (417)
Q Consensus 281 --~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaA 358 (417)
.+|+|.+|+++|..|+++|.|++ .|.. |++|+++||..||++|||+.|||+|+||+++...++.++|+|
T Consensus 403 l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~--------Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~s~~a~llGsA 473 (544)
T COG1069 403 LALLYRALLEATAFGTRAIIETFED-QGIA--------IDTLFASGGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAA 473 (544)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-cCCe--------eeEEEecCCcccCHHHHHHHHHhcCCeEEeecccchhhhHHH
Confidence 88999999999999999999998 7998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHhccccCCCcEEeCCC-CHHHHH-HHHHHHHHHHHHHhcccc
Q 046958 359 FAAGLAIGVFKEEEIFASSERTKTSTTFKPLL-NEEFRK-KKAESQCRAVERTFNLAD 414 (417)
Q Consensus 359 llA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~y-~~y~~~~~~~~~~~~~~~ 414 (417)
|+++++.|.+.|+..+...|. ...+...|++ +.+++| ++|++|++++......++
T Consensus 474 m~~avAag~~~dl~~A~~aMs-~~~~~~~~~~~~~~~~y~~lyr~y~~l~~~~~~~~~ 530 (544)
T COG1069 474 MFAAVAAGVHPDLPAAAQAMS-SAVEKTLPPPPERAARYERLYRRYLQLHDDAEKHYA 530 (544)
T ss_pred HHHHHHhccCcchHHHHHHhh-cccceecCChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999985 4444455555 788888 489999999887766443
|
|
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=279.81 Aligned_cols=381 Identities=19% Similarity=0.197 Sum_probs=286.9
Q ss_pred ccccCCCCccccccccCC---------cccccccccCCcccHHHHHhhh-----------hhccccccccchHHHHhhhh
Q 046958 5 WTWNLDSPKVNTNLGFIF---------FPLGPSEHWAGFRLVVENRTVQ-----------WRSNKMVPVQRIPELTRSRQ 64 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~g---------~pl~p~i~W~D~R~~~~~~~~~-----------~~G~~~~~~~~~~kl~wl~~ 64 (417)
.-|.+++-++-++|+.+- -.+...-.|+|+.+..++++++ +||...+..|+.++|+-+.+
T Consensus 103 VyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSRAy~RFTGpQIrKi~~ 182 (545)
T KOG2531|consen 103 VYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSRAYERFTGPQIRKIYQ 182 (545)
T ss_pred eeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcchhhhhcccHHHHHHHH
Confidence 458888888888888852 3556677899999999998874 78999999999999999999
Q ss_pred cCCCcccccccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCcc
Q 046958 65 QTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSEI 143 (417)
Q Consensus 65 ~~p~~~~~~~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~~ 143 (417)
.+|| .|+++.++-.+++|++..|-|. ....|+|.+|++.|||++++.||.++|+.+.-+ +++|-..+++..+
T Consensus 183 ~~pe---~Ye~TerISLVSsFlaSlllG~----~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~KL~~pv~~~~~ 255 (545)
T KOG2531|consen 183 QEPE---AYEKTERISLVSSFLASLLLGS----YAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEEKLGKPVPPMSI 255 (545)
T ss_pred hChH---hhhccceeehHHHHHHHHHhcc----ccceecccccCchHHHHhhhhhhHHHHhhhChhHHHHhCCCCCcccc
Confidence 9997 8999999999999999999994 778999999999999999999999999988644 3577788999999
Q ss_pred eeeecc------CCCCCCCcEEeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCC
Q 046958 144 IGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAP 217 (417)
Q Consensus 144 ~G~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 217 (417)
.|+|.. | +++++.|++-.||++++..|...+++++.+|+|||..+.+.+. ++.+.+.|.+ ||+... +
T Consensus 256 ~G~I~~Yfv~r~g-F~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~-~~~p~~egHv--f~hP~~---~ 328 (545)
T KOG2531|consen 256 AGTISKYFVKRYG-FPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTK-EYHPSPEGHV--FCHPTD---P 328 (545)
T ss_pred ccchhhhhHhhcC-CCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcC-CCCCCCCcce--eccCCC---c
Confidence 999975 6 9999999999999999999988877999999999999888885 4555555533 454331 2
Q ss_pred chhhh----------hhhcC---CCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCC-------CCCCc-eE--EEcC
Q 046958 218 TNYAL----------EDSLG---IISNASEIEELALRVN-STGGIYFVRAFNGLLAPWW-------RDDAR-SV--CIGI 273 (417)
Q Consensus 218 ~~~~l----------~~~~~---~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~-------~~~~r-g~--~~Gl 273 (417)
..|+. .+.+. ...+|+.+++...+.| +++|.+-+=|--+|-.|.. +.+.. +. -.++
T Consensus 329 ~~YM~mlCfkNgSL~RE~ir~~~~~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v 408 (545)
T KOG2531|consen 329 NHYMGMLCFKNGSLTRERIRNESANGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEV 408 (545)
T ss_pred cceEEEEEecCChHHHHHHhhcccCCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccceEEEecCCccchhhccc
Confidence 22221 11111 1358999999887765 6665532222235666621 11100 00 0133
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChh
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIEST 353 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~s 353 (417)
-...++..-+||++||-++..|...+.|.- ... +..+|+++||.++|+.+.|++|||||.||+..+..+++
T Consensus 409 ~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~-------~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa 479 (545)
T KOG2531|consen 409 AKFSDPEIEARALVEGQFLSKRARAEPLGF--KSN-------PPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSA 479 (545)
T ss_pred ccCCCchHHHHHHHHHhHhHhhhhhccccC--CCC-------CCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchh
Confidence 344568889999999999999999888753 221 17899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCHH-HHH------hccccCCCcEEeCCCCHHHHHH-HHHHHHHHHHH
Q 046958 354 ALGAAFAAGLAIGVF-KEEE-IFA------SSERTKTSTTFKPLLNEEFRKK-KAESQCRAVER 408 (417)
Q Consensus 354 alGaAllA~~~~G~~-~~~~-~~~------~~~~~~~~~~~~P~~~~~~~y~-~y~~~~~~~~~ 408 (417)
++|+|+-|+++.-.. .... ... +....+..-..+|.+.+.+.|. +.++|+++.+.
T Consensus 480 ~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~~~~e~e~~ 543 (545)
T KOG2531|consen 480 ALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSANWEIYGPLLKRLSELEDT 543 (545)
T ss_pred hHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcchHHHHHHHHHHHHHHHHh
Confidence 999999998885211 0000 000 0000123345578888888884 67788777654
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=236.77 Aligned_cols=178 Identities=36% Similarity=0.576 Sum_probs=140.3
Q ss_pred eEEeccCcceeeeecCcceeccCCCceeeec-------eecC-CCCCchhhhh---hhcCC---C---Cc-HHHHHH--H
Q 046958 179 AKSTYGTGAFIRLNTGEEVVKSKHGLLSTLA-------FKLG-PKAPTNYALE---DSLGI---I---SN-ASEIEE--L 238 (417)
Q Consensus 179 ~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~-------~~~g-~~~~~~~~l~---~~~~~---~---~~-~~~l~~--~ 238 (417)
+++|+|||+++...+ ++|..+..+++.++. |... ....++..++ +.++. . .. ++.+.. .
T Consensus 1 a~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVS-SEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEA 79 (198)
T ss_dssp EEEEESSSEEEEEEE-TSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHH
T ss_pred CEEEehhhhHHhhEe-CccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHh
Confidence 478999999998866 456666667765554 1111 0011121221 34332 1 11 233332 2
Q ss_pred HHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc
Q 046958 239 ALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF 318 (417)
Q Consensus 239 a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~ 318 (417)
....+++++++|+|+|.|+|+|+||+++||.|+|++.+|++.|++||++||++|.++++++.|++.++.+ ++
T Consensus 80 ~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~--------~~ 151 (198)
T PF02782_consen 80 AASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP--------IR 151 (198)
T ss_dssp HHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--------ES
T ss_pred hhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc--------ce
Confidence 2233578899999999999999999999999999999999999999999999999999999999865877 99
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhc
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+|+++||+++|++|+|++||++|+||++++..|++++|||++|++++
T Consensus 152 ~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 152 RIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred eeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-31 Score=248.62 Aligned_cols=146 Identities=34% Similarity=0.454 Sum_probs=132.8
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+|++|+|+|+|+|+.+++++++ .+|.++++.++++|++|+++|+|+ .++++.+|++++|||
T Consensus 84 ~~D~~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~dyl 160 (245)
T PF00370_consen 84 LLDKDGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPE---IFEKAAKFLTLSDYL 160 (245)
T ss_dssp EEETTSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHH---HHHHHHEEEEHHHHH
T ss_pred eeccccccccccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCch---hhhhhhhcccHHHHH
Confidence 5788999999999999999999987663 568999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|++++ | |++|+||++
T Consensus 161 ~~~LtG-----~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~G-l~~~~pV~~ 234 (245)
T PF00370_consen 161 AYKLTG-----RAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKELG-LPEGTPVIA 234 (245)
T ss_dssp HHHHHS-----C-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHHT-STTTEEEEE
T ss_pred Hhhccc-----cccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHhC-CCCCCEEEE
Confidence 999999 9999999999999999999999999999999999999999999999999984 7 999999999
Q ss_pred ccchHHHhHhc
Q 046958 161 CLGNQHAAMLG 171 (417)
Q Consensus 161 g~~D~~aa~lg 171 (417)
|++|++||++|
T Consensus 235 g~~D~~aa~lG 245 (245)
T PF00370_consen 235 GGGDQAAAALG 245 (245)
T ss_dssp EEEHHHHHHHH
T ss_pred EchHHHHhhcC
Confidence 99999999987
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=87.14 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=64.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccCCC
Q 046958 272 GITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADI 350 (417)
Q Consensus 272 Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~ 350 (417)
.++...+++++++++++++++.+...+..+ + ++ .|+++||+++|+.|+|.+++.++.||.+++..
T Consensus 172 ~l~~g~~~~di~~~~~~~va~~i~~~~~~~------~--------~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~ 237 (248)
T TIGR00241 172 LLAAGVKKEDILAGVYESIAERVAEMLQRL------K--------IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEP 237 (248)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHhhc------C--------CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCc
Confidence 345567899999999999999999866432 2 44 79999999999999999999999999999887
Q ss_pred C-hhHHHHHHH
Q 046958 351 E-STALGAAFA 360 (417)
Q Consensus 351 e-~salGaAll 360 (417)
+ .+|+|||++
T Consensus 238 ~~~~AlGaAl~ 248 (248)
T TIGR00241 238 QIVGAVGAALL 248 (248)
T ss_pred cHHHHHHHHhC
Confidence 5 999999984
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=77.38 Aligned_cols=165 Identities=18% Similarity=0.068 Sum_probs=105.7
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhh--hhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYA--LEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+.+++||...+..+.+. . +-...|....++.. +.+.+-...+++++.+++.+-....-=+.+-.+
T Consensus 97 ~~~i~~iG~g~si~~~~g~-~----------~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dI 165 (277)
T PRK13317 97 DYIFTNIGTGTSIHYVDGN-S----------QRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDI 165 (277)
T ss_pred cEEEEEecCceEEEEEeCC-c----------eEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccc
Confidence 4578899998776554321 1 00111111112222 223442236899999999863211111223444
Q ss_pred CCCCCCCCCCCCceEEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEec-Cccc
Q 046958 255 NGLLAPWWRDDARSVCIG-----ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDG-GATV 328 (417)
Q Consensus 255 ~Ger~P~~~~~~rg~~~G-----l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~ 328 (417)
+|...+....+.+++.|| ++...+++|++++++..++..+..+.-.+.+. .. +++|+++| |.++
T Consensus 166 y~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~--~~--------~~~Ivf~G~gla~ 235 (277)
T PRK13317 166 YKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILAGVIGLVGEVITTLSIQAARE--KN--------IENIVYIGSTLTN 235 (277)
T ss_pred cCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--------CCeEEEECccccc
Confidence 443223334567777766 34467899999999999988887764443332 23 67999999 5799
Q ss_pred cHHHHHHHHHhh---CCcEEccCCC-ChhHHHHHHHHH
Q 046958 329 NNLLMQIQADLL---GSPVLRPADI-ESTALGAAFAAG 362 (417)
Q Consensus 329 s~~~~q~~Adv~---g~pv~~~~~~-e~salGaAllA~ 362 (417)
|+.+++.+++.+ +.++.+++.+ -.+|+|||++|.
T Consensus 236 n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 236 NPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 999999999999 7888888755 499999999874
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-05 Score=73.13 Aligned_cols=78 Identities=22% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEE-ccCC-CC
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVL-RPAD-IE 351 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~-~~~~-~e 351 (417)
....+++|++++++++++-++..++..+ +. -+.|+++||.++|+.+.+.+.+.++++|. ++.. ..
T Consensus 210 ~~G~~~edI~aGl~~sia~rv~~~~~~~----~i---------~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~ 276 (293)
T TIGR03192 210 KAGYTKNMVIAAYCQAMAERVVSLLERI----GV---------EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQI 276 (293)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHhccc----CC---------CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccH
Confidence 3467899999999999998765554432 33 25699999999999999999999999998 4443 45
Q ss_pred hhHHHHHHHHHHh
Q 046958 352 STALGAAFAAGLA 364 (417)
Q Consensus 352 ~salGaAllA~~~ 364 (417)
.+|+|||++|...
T Consensus 277 ~GAlGAAL~A~~~ 289 (293)
T TIGR03192 277 AGALGAALFGYTL 289 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999643
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=72.53 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-----CCcEEcc
Q 046958 273 ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-----GSPVLRP 347 (417)
Q Consensus 273 l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-----g~pv~~~ 347 (417)
+....+++|++.+++++|+-++...+..+. +. .+.|+++||.++|+.+.+.+.+.+ +.+|.++
T Consensus 350 la~G~~reDIaAGL~~SIA~Rv~s~l~r~~---~i---------~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp 417 (432)
T TIGR02259 350 LALGDKREDILAGLHRAIILRAISIISRSG---GI---------TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINID 417 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHhccc---CC---------CCCEEEECCccccHHHHHHHHHHHccccCCCeEecC
Confidence 344678999999999999998877766543 22 357999999999999999999999 5788887
Q ss_pred CCCC-hhHHHHHHHH
Q 046958 348 ADIE-STALGAAFAA 361 (417)
Q Consensus 348 ~~~e-~salGaAllA 361 (417)
+..+ .+|+|||+.|
T Consensus 418 ~~pq~~GALGAAL~a 432 (432)
T TIGR02259 418 PDSIYTGALGASEFA 432 (432)
T ss_pred CCccHHHHHHHHHhC
Confidence 7654 8899999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=60.71 Aligned_cols=161 Identities=18% Similarity=0.059 Sum_probs=98.1
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC-Cch-hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA-PTN-YALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~-~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+++++||+.-+..+..+ . . -..-|... .+. +-|-..+....+++++.+++++-...+-=+.+..++
T Consensus 103 ~llvnIGsGvSi~~v~~~-~-~---------~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIY 171 (279)
T TIGR00555 103 YLLVNIGTGTSILYVDGD-N-Y---------ERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIY 171 (279)
T ss_pred eEEEEecCCeEEEEEcCc-c-E---------EEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccccccccc
Confidence 388999999776654421 1 0 01111111 122 223244433478999999998642111112244555
Q ss_pred CCC--CCCCCCCCceEEEc-C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-
Q 046958 256 GLL--APWWRDDARSVCIG-I-----TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA- 326 (417)
Q Consensus 256 Ger--~P~~~~~~rg~~~G-l-----~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~- 326 (417)
|.. .+.-..+.-++-+| + ....+++|++++++..|+.++-++--..... .. +++|++.||.
T Consensus 172 g~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~--~~--------~~~IvF~Gg~L 241 (279)
T TIGR00555 172 GGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALR--YN--------IDRIVFIGSFL 241 (279)
T ss_pred CCCCCCCCCCcceeeeccchhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCeEEEECCcc
Confidence 521 11223455566667 3 3456799999999999999886654332221 23 7899999995
Q ss_pred cccHHHHHHHHHhhC---CcEEccCC-CChhHHHHHH
Q 046958 327 TVNNLLMQIQADLLG---SPVLRPAD-IESTALGAAF 359 (417)
Q Consensus 327 a~s~~~~q~~Adv~g---~pv~~~~~-~e~salGaAl 359 (417)
..|+.+++.++..+. ..+..++. .-.+|+|||+
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 242 RNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 568999999999886 44566664 4489999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=70.75 Aligned_cols=75 Identities=27% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCC-hh
Q 046958 275 RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-ST 353 (417)
Q Consensus 275 ~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e-~s 353 (417)
...+++|++++++.+|+-++... .+++ .+. -+.|+++||.++|+.+.+.+.+.+|.++.+++.++ .+
T Consensus 326 ~G~~~eDIaAGl~~SIa~rv~~~--l~~~-~~i---------~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~G 393 (404)
T TIGR03286 326 EGASPEDVAAAACHSVAEQVYEQ--QLQE-IDV---------REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIG 393 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--Hhhc-CCC---------CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHH
Confidence 35789999999999999888642 1222 232 25699999999999999999999999999988766 89
Q ss_pred HHHHHHHH
Q 046958 354 ALGAAFAA 361 (417)
Q Consensus 354 alGaAllA 361 (417)
|+|||++|
T Consensus 394 AiGAAL~A 401 (404)
T TIGR03286 394 AVGAALLA 401 (404)
T ss_pred HHHHHHHh
Confidence 99999987
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00044 Score=67.94 Aligned_cols=108 Identities=23% Similarity=0.347 Sum_probs=77.4
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEc-------CCCCCCHHHHHHHHHHHHHHHHHH
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIG-------ITRFTSKAHFARAVLESMCFLVKD 296 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~G-------l~~~~~~~~l~rAvlEgia~~~~~ 296 (417)
+.|+. +.+++.+++..... | .+-+.++..|+ +....+++++..++.++++-++..
T Consensus 273 ~~Lgv--~v~E~~~~A~~~~~---------------~-v~i~S~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 273 RRLGV--DVEELGKLALKATP---------------P-VKINSRCAVFAESEVISALAEGASPEDILAGLAYSVAENVAE 334 (396)
T ss_pred HHhCC--CHHHHHHHHhcCCC---------------C-cccCCeeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 55664 67888887765311 1 01223344443 234578999999999999877654
Q ss_pred HHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccCCCC-hhHHHHHHHHH
Q 046958 297 VLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-STALGAAFAAG 362 (417)
Q Consensus 297 ~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e-~salGaAllA~ 362 (417)
- .+++ .+ ++ .|++.||.+.|..+...+.+.++++|.+++..+ ..|+|||++|-
T Consensus 335 ~--~~~~---~~--------i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 335 K--VIKR---VD--------IEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred H--Hhhc---cC--------CCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 1 2322 22 33 399999999999999999999999999988655 89999999885
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00069 Score=64.43 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-Cc----EEccC
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SP----VLRPA 348 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~p----v~~~~ 348 (417)
....++++++.++.++++-++...+..+ +.. -++|+++||.++|+.+.+.+.+.++ .+ |.+++
T Consensus 181 ~~G~~~edI~aGl~~sia~r~~~~~~~~----~~~--------~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~ 248 (262)
T TIGR02261 181 SRGISAPNILKGIHESMADRLAKLLKSL----GAL--------DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHP 248 (262)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHhcc----CCC--------CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCC
Confidence 3467899999999999999876665544 222 2469999999999999999999994 23 33333
Q ss_pred C-CChhHHHHHHHH
Q 046958 349 D-IESTALGAAFAA 361 (417)
Q Consensus 349 ~-~e~salGaAllA 361 (417)
. ....|+|||++|
T Consensus 249 ~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 249 DAIYAGAIGAALWG 262 (262)
T ss_pred cchHHHHHHHHHcC
Confidence 3 348899999974
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00083 Score=72.28 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=46.2
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVFK 369 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~~ 369 (417)
++.|+++||.+|.|.+.++++++||.++.. .+..|+.|+|||+.|+...|.++
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 889999999999999999999999987655 34567999999999998877543
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=70.09 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=45.5
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~ 368 (417)
++.|+++||++|.|.+.+++.++|+.++.. .+..|+.|+|||+.|+...+..
T Consensus 329 Id~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~ 381 (668)
T PRK13410 329 IDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL 381 (668)
T ss_pred CcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc
Confidence 889999999999999999999999986554 4567899999999999876643
|
|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.034 Score=55.63 Aligned_cols=165 Identities=15% Similarity=0.022 Sum_probs=99.5
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC--CchhhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA--PTNYALEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~--~~~~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+++++||+.-+..+..+. . +-.+-|... ...|-|-..+-...+|+++.++|++-...+-=+.+-.+
T Consensus 166 PyLLVNIGSGVSilkV~~~~-------~---~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDI 235 (398)
T PLN02920 166 PYLLVNIGSGVSMIKVDGDG-------K---FERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDI 235 (398)
T ss_pred ceEEEEcCCCEEEEEEeCCC-------c---EEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccc
Confidence 35889999997665544311 0 111112111 12233434443357899999998853211111335666
Q ss_pred CCCC---CCCCCCCCceEEEc--CCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEec
Q 046958 255 NGLL---APWWRDDARSVCIG--ITR-----FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDG 324 (417)
Q Consensus 255 ~Ger---~P~~~~~~rg~~~G--l~~-----~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~G 324 (417)
.|.. .+.-..+.-++-+| ... +.+++|++|+++--|..++-++--...+. .. +++|++.|
T Consensus 236 YGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~--~~--------ik~Ivf~G 305 (398)
T PLN02920 236 YGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALR--FG--------LKRIFFGG 305 (398)
T ss_pred cCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEEe
Confidence 6532 22234555566666 321 35699999999999999998775443332 33 88999999
Q ss_pred CccccH-HHHHHHHHhhC------CcEEccC-CCChhHHHHHHHH
Q 046958 325 GATVNN-LLMQIQADLLG------SPVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 325 G~a~s~-~~~q~~Adv~g------~pv~~~~-~~e~salGaAllA 361 (417)
+..+++ ..++.++-... +....+. ..-.+|+||++..
T Consensus 306 ~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 306 FFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred ecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 999976 77776666553 3333444 4558999997754
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0027 Score=60.05 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhHHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTALGAAF 359 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~salGaAl 359 (417)
++....++.+.-.++..++ + .+ ++.|+++||+++.+.+.+.+.+.|+.||.++.. .+++|+|+|+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~--------~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QG--------VKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CC--------CCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4455555555555554443 2 23 689999999999999999999999999998664 5699999986
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0051 Score=59.09 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=40.9
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaAllA 361 (417)
++.|+++||+++.+.+.+++++.||.||+++..+ ..+++|+|+.+
T Consensus 222 ~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 7899999999999999999999999999997765 59999999853
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0052 Score=66.26 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sal 355 (417)
-+|.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+
T Consensus 293 itR~~f-e~l~~~l~~~~~~~i~~~l~~a~~~-----~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~ 366 (627)
T PRK00290 293 LTRAKF-EELTEDLVERTIEPCKQALKDAGLS-----VSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAI 366 (627)
T ss_pred ECHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----hhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHH
Confidence 466665 3334444444444443322223432 123889999999999999999999999987665 456789999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.|+.-.|.
T Consensus 367 GAa~~aa~l~~~ 378 (627)
T PRK00290 367 GAAIQGGVLAGD 378 (627)
T ss_pred hHHHHHHHhcCC
Confidence 999999876654
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.006 Score=65.95 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCceEEEecCccccHHHHHHHHHhhCC-cEEccCCCChhHHHHHHHHHHhcCC
Q 046958 316 PEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 316 ~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~~e~salGaAllA~~~~G~ 367 (417)
.++.|+++||.+|-|.+.+++.+.|+. |+...+..|+.|+|||+.|+.-.+.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc
Confidence 388999999999999999999999997 4555667899999999999876653
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0055 Score=65.60 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=43.3
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G 366 (417)
++.|.++||++|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 329 i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcc
Confidence 789999999999999999999999987766 45678999999999987665
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0071 Score=64.84 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sal 355 (417)
-++.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+
T Consensus 291 itr~~f-e~l~~~l~~~~~~~i~~~l~~a~~~-----~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~ 364 (595)
T TIGR02350 291 LTRAKF-EELTADLVERTKEPVRQALKDAGLS-----ASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAI 364 (595)
T ss_pred EeHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----HhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHH
Confidence 456665 3444444444444444332223432 123789999999999999999999999977665 456789999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.|+.-.+.
T Consensus 365 GAa~~aa~l~~~ 376 (595)
T TIGR02350 365 GAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHhcCC
Confidence 999999876554
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0089 Score=64.29 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=44.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.+|.|.+.+++++.||.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999976544 456789999999999876553
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=63.74 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=45.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 899999999999999999999999987655 567889999999999876654
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=63.35 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDS-KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~-l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sa 354 (417)
-|+.+| ..+++.+.-.+...++. |++ .+.. ...++.|+++||+++.|.+.+++.+.|+.++.. .+..++.|
T Consensus 279 itr~ef-e~l~~~ll~~i~~~i~~~L~~-a~~~-----~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA 351 (599)
T TIGR01991 279 LTRDEF-EALIQPLVQKTLSICRRALRD-AGLS-----VEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVA 351 (599)
T ss_pred EeHHHH-HHHHHHHHHHHHHHHHHHHHH-cCCC-----hhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHH
Confidence 466665 33344444444443333 332 3432 123889999999999999999999999976554 45678999
Q ss_pred HHHHHHHHHhcC
Q 046958 355 LGAAFAAGLAIG 366 (417)
Q Consensus 355 lGaAllA~~~~G 366 (417)
+|||+.|+.-.+
T Consensus 352 ~GAai~a~~l~~ 363 (599)
T TIGR01991 352 LGAAIQADLLAG 363 (599)
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=59.06 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEEccCCCC
Q 046958 273 ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVLRPADIE 351 (417)
Q Consensus 273 l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~~~~~e 351 (417)
+...-++.++ ..+++.+.-.+...++..-+..+.. ++.|+++||.++.|.+.+++.+.|+ .|+...+.-+
T Consensus 365 ~~~~ItR~ef-e~ii~~~l~ri~~~i~~~L~~a~~~--------~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~ 435 (450)
T PRK11678 365 LATEISQQGL-EEAISQPLARILELVQLALDQAQVK--------PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFG 435 (450)
T ss_pred cceeeCHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC--------CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcc
Confidence 3444567766 3445556666666655544335666 7899999999999999999999996 6888888889
Q ss_pred hhHHHHHHHHHH
Q 046958 352 STALGAAFAAGL 363 (417)
Q Consensus 352 ~salGaAllA~~ 363 (417)
+.|.|+|+.|..
T Consensus 436 sVa~Gla~~a~~ 447 (450)
T PRK11678 436 SVTAGLARWAQV 447 (450)
T ss_pred hHHHHHHHHHHh
Confidence 999999998854
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=61.63 Aligned_cols=50 Identities=22% Similarity=0.101 Sum_probs=44.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G 366 (417)
++.|+++||.+|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999987665 45678999999999987544
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0087 Score=59.42 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAA 358 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaA 358 (417)
+++...++.+.-.++..++........+ .++ .|+++||+++-+.+.+++++.|+.||.+.. ..++.|+|||
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~-------~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa 318 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSAD-------IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTG 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHh-------hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHH
Confidence 3344455555555555554432100011 144 699999999999999999999999999876 5679999999
Q ss_pred HHHHH
Q 046958 359 FAAGL 363 (417)
Q Consensus 359 llA~~ 363 (417)
+++..
T Consensus 319 ~~~~~ 323 (336)
T PRK13928 319 KMLEN 323 (336)
T ss_pred HHHhc
Confidence 99754
|
|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.048 Score=54.57 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC-cEEccCC-----CC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPAD-----IE 351 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~-----~e 351 (417)
+++|+++.+.|-.|.++.+.++.+.. + +++|+++|||++|+.+++.+...+.. +|...+. .-
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~----~--------~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~ 325 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPP----Q--------PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDA 325 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-T----T---------EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC----C--------CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHH
Confidence 69999999999999998888877643 3 68999999999999999999998865 7876431 22
Q ss_pred hhHHHHHHHHHHhc-CCCCCHHH
Q 046958 352 STALGAAFAAGLAI-GVFKEEEI 373 (417)
Q Consensus 352 ~salGaAllA~~~~-G~~~~~~~ 373 (417)
--|+.-|+||...+ |.-.++..
T Consensus 326 ~EA~aFA~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 326 KEAMAFAWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp HHHHHHHHHHHHHHCT---S-HH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCc
Confidence 34666677776654 33333433
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=57.03 Aligned_cols=76 Identities=24% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC--CChh-
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD--IEST- 353 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~--~e~s- 353 (417)
.+++|+++-+.|-.|.++.+.+..+. .. .++|+++|||++|+.+++.+...+..+|...+. -..-
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~--------~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da 326 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PG--------PDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDA 326 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhH
Confidence 48999999999999988888876543 22 568999999999999999999999756665443 2223
Q ss_pred --HHHHHHHHHHh
Q 046958 354 --ALGAAFAAGLA 364 (417)
Q Consensus 354 --alGaAllA~~~ 364 (417)
|+.-|++|...
T Consensus 327 ~EA~aFA~La~~~ 339 (365)
T PRK09585 327 KEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 44445555444
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=63.86 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=44.7
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 368 i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 368 LNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC
Confidence 799999999999999999999999987654 456789999999999876553
|
|
| >PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.053 Score=53.86 Aligned_cols=164 Identities=18% Similarity=0.063 Sum_probs=91.9
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCch--hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTN--YALEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+++++||+..+..+.++.. +..+-|....++ |-|-..+--..+|+++.++|++-...+-=+.+..+
T Consensus 157 PyllvniGsGvSi~~v~~~~~----------~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DI 226 (341)
T PF03630_consen 157 PYLLVNIGSGVSILKVEGPNQ----------FERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDI 226 (341)
T ss_dssp SEEEEEESSSEEEEEEEETTE----------EEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHH
T ss_pred cEEEEEcCCceEEEEEeCCCc----------eEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeec
Confidence 468899999876655442111 111111111122 33333332246899999998763211111334455
Q ss_pred CCCC--CCCCCCCCceEEEcC-C------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 255 NGLL--APWWRDDARSVCIGI-T------RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 255 ~Ger--~P~~~~~~rg~~~Gl-~------~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
.|.. .+.-..+.-++-+|- . ...+++|++++++.-|+.++-++.-...+..+ +++|+++|.
T Consensus 227 yg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~----------~~~I~f~G~ 296 (341)
T PF03630_consen 227 YGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHG----------VKRIVFGGS 296 (341)
T ss_dssp HSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT------------EEEEESG
T ss_pred cCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEEec
Confidence 5544 222234555555552 1 13468999999999999999887655444333 789999999
Q ss_pred ccc-cHHHHHHHH---HhhC---CcEEccC-CCChhHHHHHHH
Q 046958 326 ATV-NNLLMQIQA---DLLG---SPVLRPA-DIESTALGAAFA 360 (417)
Q Consensus 326 ~a~-s~~~~q~~A---dv~g---~pv~~~~-~~e~salGaAll 360 (417)
..+ ++..++.++ +-+. .....+. ..-.+|+||.+.
T Consensus 297 ~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 297 FIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp GGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 987 578889998 4442 3344444 556999999874
|
CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.023 Score=56.23 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAA 358 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaA 358 (417)
+++...++++.-.++..++......... .++ .|+++||+++-+.+.+.+.+.++.||.+.. ..++.|+|||
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~-------~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~ 319 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELAAD-------IVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTG 319 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhhhh-------hhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHH
Confidence 3444455555555555554432100011 023 499999999999999999999999999875 5668999999
Q ss_pred HHHHH
Q 046958 359 FAAGL 363 (417)
Q Consensus 359 llA~~ 363 (417)
+++..
T Consensus 320 ~~~~~ 324 (334)
T PRK13927 320 KALEN 324 (334)
T ss_pred HHHhh
Confidence 99865
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.029 Score=60.78 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=43.4
Q ss_pred CceEEEecCccccHHHHHHHHHhhC-CcE-EccCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLG-SPV-LRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g-~pv-~~~~~~e~salGaAllA~~~~G 366 (417)
++.|.++||.+|.|.+.+++.+.|+ .++ ...+..|+.|+|||+.|+.-.+
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 7899999999999999999999996 455 4456788999999999987655
|
|
| >PLN02902 pantothenate kinase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.35 Score=53.05 Aligned_cols=164 Identities=13% Similarity=0.034 Sum_probs=99.4
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCc--hhhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPT--NYALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~--~~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+++++||+.-+..+.+.. . +-.+-|....+ .|-|-..+--..+|+++-++|++-...+-=+.+-.++
T Consensus 216 yLLVNIGSGVSilkV~~~~-------~---~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIY 285 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDGDG-------K---FERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIY 285 (876)
T ss_pred eEEEEcCCceEEEEEecCC-------c---EEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeecccc
Confidence 4889999997665544211 1 11221211112 2333344433578999999987632222113446666
Q ss_pred CCC---CCCCCCCCceEEEc--CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 256 GLL---APWWRDDARSVCIG--IT-----RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 256 Ger---~P~~~~~~rg~~~G--l~-----~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
|.. .+.-..+.-++-+| .. .+.+++|++++++--|.+++-++--...+. .. +++|++.|.
T Consensus 286 Gg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~--~~--------ikrIvF~G~ 355 (876)
T PLN02902 286 GGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALR--FG--------LKRIFFGGF 355 (876)
T ss_pred CCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecc
Confidence 632 11223444455555 21 135699999999999999998875444442 33 889999999
Q ss_pred ccc-cHHHHHHHHHhhC------CcEEccC-CCChhHHHHHHHH
Q 046958 326 ATV-NNLLMQIQADLLG------SPVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 326 ~a~-s~~~~q~~Adv~g------~pv~~~~-~~e~salGaAllA 361 (417)
..+ ++.-|+.++-.+. +....+. ....+|+||.+..
T Consensus 356 fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 356 FIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred eecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 987 6788888887664 3344444 4558999998654
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.025 Score=55.99 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHHHH
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAAGL 363 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA~~ 363 (417)
.|+++||+++-|.+.+.+++.|+.||.+.. ..++.|+|||+++..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 699999999999999999999999999876 567899999998643
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.03 Score=60.68 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEEc-cCCCChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVLR-PADIESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~-~~~~e~sa 354 (417)
-+|.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.|+ .++.. .+..++.|
T Consensus 294 itR~~f-e~l~~~l~~~~~~~i~~~L~~a~~~-----~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA 367 (653)
T PRK13411 294 LTRAKF-EELTKDLVEATIEPMQQALKDAGLK-----PEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVA 367 (653)
T ss_pred EcHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----HHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHH
Confidence 466665 3344444444333333322223432 1227899999999999999999999997 55544 46678999
Q ss_pred HHHHHHHHHhcCC
Q 046958 355 LGAAFAAGLAIGV 367 (417)
Q Consensus 355 lGaAllA~~~~G~ 367 (417)
+|||+.|+.-.+.
T Consensus 368 ~GAAi~aa~l~~~ 380 (653)
T PRK13411 368 LGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876554
|
|
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.046 Score=57.75 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAA 358 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaA 358 (417)
+++...+++=+-.-+...+.... +...+ +..|=++||.+|.|...+++++.||++..+ ++..|+.|+|||
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~-l~~ed--------i~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~A 376 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAK-LKVED--------IHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAA 376 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-Ccccc--------ceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHH
Confidence 44455666666555555555422 12334 788999999999999999999999999987 457899999999
Q ss_pred HHHHHhc
Q 046958 359 FAAGLAI 365 (417)
Q Consensus 359 llA~~~~ 365 (417)
|.+|.-.
T Consensus 377 LqcAIlS 383 (727)
T KOG0103|consen 377 LQCAILS 383 (727)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=51.58 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCCCChh
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPADIEST 353 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~~e~s 353 (417)
.++.++.+++.+.++-.+-+..+...+..| +++|+++||.++|..+++.+.+.+ |.+|.+++..-++
T Consensus 212 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~ 281 (323)
T PRK14878 212 ERLEDVCYSLRETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAG 281 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 457899999999998888888777765444 678999999999999999999988 8888887643333
Q ss_pred HHHHHH
Q 046958 354 ALGAAF 359 (417)
Q Consensus 354 alGaAl 359 (417)
--|+++
T Consensus 282 D~GimI 287 (323)
T PRK14878 282 DNGAMI 287 (323)
T ss_pred hHHHHH
Confidence 333333
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.035 Score=54.89 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=39.9
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHHHH
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAAGL 363 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA~~ 363 (417)
.|+++||+++-+.+.+.+++.++.|+.+.. ..++.++|||+.+..
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 399999999999999999999999999875 456889999998753
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=51.53 Aligned_cols=82 Identities=24% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC----
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD---- 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~---- 349 (417)
.++.++.+++.+.++-.+.+.++...+.++ +++|+++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 225 ~~~~~iA~s~q~~l~~~l~~~~~~~~~~~~----------~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~ 294 (332)
T PRK09604 225 QTKADIAASFQAAVVDVLVIKTKRALKQTG----------VKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCT 294 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 347899999999999888888877755344 678999999999999999999998 788888653
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 046958 350 IESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~~ 368 (417)
..+.++|+|-+-..-.|..
T Consensus 295 D~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 295 DNAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3455666665544445543
|
|
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.16 Score=51.04 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCc-EEccC--CC
Q 046958 277 TSKAHFA---RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSP-VLRPA--DI 350 (417)
Q Consensus 277 ~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~p-v~~~~--~~ 350 (417)
....|++ +..+|-+.. +.++.+.+.+|.+ +.|.++||.+-|-..++.+++-.+.. |.+++ ..
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~---~~~~~~~~~~g~~---------~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD 200 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVL---HLVRHLLERTGID---------NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGD 200 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHH---HHHHHHHHHHT-----------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSG
T ss_pred chHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCC---------CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCC
Confidence 3566675 555555554 4444444445632 34999999999999999999997754 77755 35
Q ss_pred ChhHHHHHHHHHHhcCC
Q 046958 351 ESTALGAAFAAGLAIGV 367 (417)
Q Consensus 351 e~salGaAllA~~~~G~ 367 (417)
++.++|||+.+....+.
T Consensus 201 ~G~aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 201 AGLAIGAALYAWHELGG 217 (360)
T ss_dssp GGHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHhcC
Confidence 69999999999877654
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.18 Score=48.34 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHH-----HHhhCCcEEccC-CCChhH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQ-----ADLLGSPVLRPA-DIESTA 354 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~-----Adv~g~pv~~~~-~~e~sa 354 (417)
.....|++..+..+...+..+.+..+.. -..|+++||.++|..+.+-+ ..+...|+.++. ....++
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~--------~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a 264 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPE--------KEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPA 264 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCC--------CCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHH
Confidence 3456677777777777666665433322 22399999999997776655 555566666654 456899
Q ss_pred HHHHHHH
Q 046958 355 LGAAFAA 361 (417)
Q Consensus 355 lGaAllA 361 (417)
+|||++|
T Consensus 265 ~GAallA 271 (271)
T PF01869_consen 265 YGAALLA 271 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999987
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.18 Score=49.84 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEE
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVL 345 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~ 345 (417)
.+.+|+.+.+.|-.+-.+-..+..+ ... .+++++||||.+|+++|+.+|..+ |.+|.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~~~----~~~--------p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVATL----QGD--------PRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc----cCC--------CceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 4789999999998888776666522 234 689999999999999999999999 54555
|
|
| >TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.096 Score=57.13 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC---CcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG---SPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g---~pv~~~~----~ 349 (417)
.+++++.+++.+.++-.+...++.+.+..+ ++.|+++||.++|..+++.+.+.+. ..|..+. .
T Consensus 629 ~~~~~IAa~fh~tla~~L~~~a~~~~~~~g----------~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~n 698 (711)
T TIGR00143 629 EDRSKIAHIAHKFVASGLVEIATAIAVPFG----------IHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPG 698 (711)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCC
Confidence 457788888888888888777777655344 6789999999999999999998875 6776643 3
Q ss_pred CChhHHHHHHHHH
Q 046958 350 IESTALGAAFAAG 362 (417)
Q Consensus 350 ~e~salGaAllA~ 362 (417)
..+.++|.|++|+
T Consensus 699 DgGislGQa~~a~ 711 (711)
T TIGR00143 699 DGGISLGQAVAAA 711 (711)
T ss_pred HHHHHHHHHHHhC
Confidence 4578888887763
|
A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.12 Score=51.43 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=38.9
Q ss_pred Cc-eEEEecCccccHHHHHHHHHhhCCcEEcc-CCCChhHHHHHHH
Q 046958 317 EF-VLRVDGGATVNNLLMQIQADLLGSPVLRP-ADIESTALGAAFA 360 (417)
Q Consensus 317 ~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~-~~~e~salGaAll 360 (417)
++ .|+++||+|+-+.+.+.+++.++.||.+. +..++.++||++.
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 45 59999999999999999999999999986 4556889999887
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.21 Score=51.17 Aligned_cols=79 Identities=19% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC-------
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKD---AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA------- 348 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~---~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~------- 348 (417)
..+++++-+|.+.-.+++.++.+.+. .|.. ...+..|+++||+|+-+.+.++++++|+.||.+..
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~-----~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~ 367 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVK-----HHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGL 367 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----ccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCC
Confidence 45567777777777777766554332 1211 11267799999999999999999999999999732
Q ss_pred ------CCChhHHHHHHHHH
Q 046958 349 ------DIESTALGAAFAAG 362 (417)
Q Consensus 349 ------~~e~salGaAllA~ 362 (417)
...++++|.++.+.
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhh
Confidence 23356666666543
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.16 Score=50.49 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAV-EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
.++++..++-++-+++..++-+....+ .. ++.|+++||+++-+-+...++..||.||++.+.
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~--------i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNS--------LDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcc--------cceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 356889999999999888877653222 23 899999999999999999999999999998653
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.22 Score=53.24 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCCC
Q 046958 315 KPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVFK 369 (417)
Q Consensus 315 ~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~~ 369 (417)
..++.|.++||.+|-|...+.+++.|+++... ++..|+.|+|||+.|+.-.|...
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc
Confidence 44899999999999999999999999966665 56788999999999998777543
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.18 Score=50.10 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKD-AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA 348 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~ 348 (417)
..+.++..++-++-+++..++-+... .+.+ +++|+++||+++-+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~--------i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGES--------IERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 45778999999999999999976542 2444 99999999999999999999999999999865
|
|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.4 Score=47.18 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
++.++.+++.+.++..+.+.++...+.++ +++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~----------~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTG----------LKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 46899999999999998888877765344 678999999999999999999998 888888654
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.087 Score=52.03 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=35.8
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHHHHH
Q 046958 318 FVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 318 ~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaAllA 361 (417)
+-|+++||+|+-+-+-+.+++-++.||.+.+.+ .+.+.|+..+.
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 349999999999999999999999999998854 58888887643
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.5 Score=47.01 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
+.++.+++.|.++-.+...++..-+..+ +++|+++||.+.|..+++.+.+.. +.+++.++.
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~~----------~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~ 299 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHCG----------SNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDE 299 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCCh
Confidence 5689999999988887666655443233 678999999999999999999887 778888764
|
|
| >KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.74 Score=44.19 Aligned_cols=193 Identities=18% Similarity=0.120 Sum_probs=97.2
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh----------hhcC
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE----------DSLG 227 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~----------~~~~ 227 (417)
+.-..|...++.+.-. +.+-+++..||++.-+..-++ -.....|-| .+.+|..+...|.-. +-+.
T Consensus 102 ~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~D-Gs~~~~ggw---g~~iGd~GSaywia~~Avq~vfda~dg~e 177 (336)
T KOG1794|consen 102 FYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPD-GSEKGAGGW---GHMIGDGGSAYWIARQAVQMVFDAEDGFE 177 (336)
T ss_pred eeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCC-CCccCCCCC---CCccCCCcchhhhhhhhhhheeehhcCcc
Confidence 4455788777766555 677788999999865543321 111222223 344554333334321 1111
Q ss_pred CC-CcHHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCC-------CCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046958 228 II-SNASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRD-------DARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298 (417)
Q Consensus 228 ~~-~~~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~-------~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~ 298 (417)
.. ...+.+.+.+-+. .-.+-+-.+++++ +-|.|.. -++..-.| +.-.+.++|-.=|-++..++..+
T Consensus 178 ~~~~~i~~v~~tif~~~~l~d~l~ml~~~Y--s~f~k~riA~f~~kla~~ae~G---d~~~~~ifr~Ag~~Lg~~V~aVl 252 (336)
T KOG1794|consen 178 NMMDKIKDVKQTIFKHFNLRDRLQMLEHLY--SDFDKHRIALFTEKLAEHAEIG---DPLSAEIFRNAGETLGRHVVAVL 252 (336)
T ss_pred cccchHHHHHHHHHHHcCCCCHHHHHHHHH--hcchHHHHHHHHHHHHhhhhcc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1122333333322 2233444556653 1121100 01111122 11124455555566666666665
Q ss_pred HHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHH-hhCC----cEEccCCCChhHHHHHHHHHHhcCC
Q 046958 299 DSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQAD-LLGS----PVLRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 299 ~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Ad-v~g~----pv~~~~~~e~salGaAllA~~~~G~ 367 (417)
..+.. ...+ . ..-.|+..||..+ ++.|++=+-+ +.+. .++....++++|+|||++|+.-.+.
T Consensus 253 ~~l~~-~~k~-----g-~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 253 PQLPP-TLKK-----G-KTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred hhcCc-hhcc-----c-CcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhccc
Confidence 55433 1111 1 1346899999976 6888774433 3332 2666667899999999999987764
|
|
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.22 Score=49.76 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCCceEEEecCccccHHHHHHHHHhh-CCcE-EccCCCChhHHHHHHHHHHhcCC
Q 046958 314 AKPEFVLRVDGGATVNNLLMQIQADLL-GSPV-LRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 314 ~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv-~~~~~~e~salGaAllA~~~~G~ 367 (417)
.+++..|+++||.+|-|-..|++-+.| |+.- .=....|+.|.|||..|++-.|.
T Consensus 360 KsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 360 KSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred cccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 345899999999999999999999999 4443 33567899999999999987765
|
|
| >TIGR03722 arch_KAE1 universal archaeal protein Kae1 | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.41 Score=47.28 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHh---hCCcEEccCC
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADL---LGSPVLRPAD 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv---~g~pv~~~~~ 349 (417)
.++.++.+++.+.++-.+.+..+...+.+| +++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 213 ~~~~diAasfq~~l~~~l~~~a~~~~~~~g----------~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 213 ARLEDVCYSLQETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 347899999999999888888877766444 67899999999999999999995 4677887554
|
This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. |
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.55 Score=49.66 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----CC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----DI 350 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~~ 350 (417)
+..++.+++.+.++..+.+.++...+.+| +++|+++||.+.|..+++.+.+.+ +.+|.+++ ..
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g----------~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D 286 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG----------KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGD 286 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccc
Confidence 46789999999999888888777655444 678999999999999999999766 77888865 24
Q ss_pred ChhHHHHHHHHHH
Q 046958 351 ESTALGAAFAAGL 363 (417)
Q Consensus 351 e~salGaAllA~~ 363 (417)
.+.++|+|.....
T Consensus 287 ~g~~ia~a~~~~~ 299 (535)
T PRK09605 287 NGAMIAWLGLLMY 299 (535)
T ss_pred hHHHHHHHHHHHH
Confidence 5777777765443
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.6 Score=47.81 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhhC------CcEEccC-
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLLG------SPVLRPA- 348 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~g------~pv~~~~- 348 (417)
.+.+|++|+++--|..++-++--...+. .. +++|++.|+..+ |+..|+.++..+. +....+.
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~--~~--------~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~h 1431 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRV--QG--------VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEH 1431 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecC
Confidence 3589999999999999998775433332 34 889999999654 8999999998874 4445554
Q ss_pred CCChhHHHHHHHH
Q 046958 349 DIESTALGAAFAA 361 (417)
Q Consensus 349 ~~e~salGaAllA 361 (417)
....+|+||++..
T Consensus 1432 egy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1432 DGYLGALGCATLD 1444 (1452)
T ss_pred ccccHHhhhhhcC
Confidence 4568999999864
|
|
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.49 Score=49.22 Aligned_cols=76 Identities=24% Similarity=0.191 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHH-HHHHHhhCCcEEccC--CCChhHH
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLM-QIQADLLGSPVLRPA--DIESTAL 355 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~-q~~Adv~g~pv~~~~--~~e~sal 355 (417)
.+..+++.+|.+...+...+.. .+| ..+|..+||.+.|-.++ +++...+...|.+.+ ...+.|+
T Consensus 261 iAasaQ~~lE~l~l~~~~~~~~---~~g----------~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~Av 327 (555)
T COG2192 261 IAASAQAYLEELVLEMLRYLRE---ETG----------EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAV 327 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhC----------ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHH
Confidence 3444678899988876555433 244 46899999999999999 899999999998865 3568999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.+..-.+.
T Consensus 328 GAAl~~~~~~~~ 339 (555)
T COG2192 328 GAALAVKRELGG 339 (555)
T ss_pred HHHHHHHHHhcC
Confidence 999998776543
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.42 Score=48.07 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=29.7
Q ss_pred Cce-EEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 317 EFV-LRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 317 ~~~-i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
+.. |+++||+++-+.+.+++.+.|+.||++...
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 555 999999999999999999999999988653
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.78 Score=44.93 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA 348 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~ 348 (417)
++.++.+++.+.++..+-+.++...+.+| +++|.++||.+.|..+++.+.+.+ +.++.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTG----------PKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 47889999999998888888777665444 678999999999999999998888 66777765
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.56 Score=46.29 Aligned_cols=79 Identities=25% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh----CCcEEccCC----CChh
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL----GSPVLRPAD----IEST 353 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~----g~pv~~~~~----~e~s 353 (417)
-+.+.+|+++-.++..+-. .. + ++.|+++|-.++++.+...+.+.| +.++..... ...+
T Consensus 239 a~ea~~E~i~k~V~~l~~~----~~-~--------~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKea 305 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLAS----VP-D--------PDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEA 305 (343)
T ss_pred HHHHHHHHHHHHHHHHhcc----cC-C--------CCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhh
Confidence 4677888887776644322 22 3 678999999999988776555555 445554432 2449
Q ss_pred HHHHHHHHH-HhcCCCCCHHH
Q 046958 354 ALGAAFAAG-LAIGVFKEEEI 373 (417)
Q Consensus 354 alGaAllA~-~~~G~~~~~~~ 373 (417)
|.|+|++|- .+-|.|+++=+
T Consensus 306 A~GaAiIA~glaGG~~~~lv~ 326 (343)
T PF07318_consen 306 AQGAAIIANGLAGGRYKELVD 326 (343)
T ss_pred hhhHHHHhhhhhcccHHHHHH
Confidence 999999984 34455554433
|
The function of this family is unknown. |
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=13 Score=37.21 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC--CcEEccCC-C--ChhHHH
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG--SPVLRPAD-I--ESTALG 356 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~pv~~~~~-~--e~salG 356 (417)
.++.+++-+++.+...+-.+....+-+ ++.|+++||.++++.+++.+.+-+. .||.+... . ++.++|
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~G 340 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHH
Confidence 456788888888888887776544224 7899999999999888877766665 36666432 2 355666
Q ss_pred HHH
Q 046958 357 AAF 359 (417)
Q Consensus 357 aAl 359 (417)
|+.
T Consensus 341 A~r 343 (358)
T PRK03011 341 ALR 343 (358)
T ss_pred HHH
Confidence 443
|
|
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.3 Score=42.03 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
+++++..+.-|.+.-.+....++.-+..+ .++++++||.+.|..+++++.... |..++.++.
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~rAl~~~~----------~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~ 297 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTERALKHTG----------KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL 297 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh
Confidence 46778888888887777666655444344 678999999999999999998866 445777653
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.77 Score=44.47 Aligned_cols=70 Identities=19% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC--ccccH-HHHHHHHHhhCCcEEccCCCChhHHHHHH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG--ATVNN-LLMQIQADLLGSPVLRPADIESTALGAAF 359 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG--~a~s~-~~~q~~Adv~g~pv~~~~~~e~salGaAl 359 (417)
++++.++++.++..++-. + .+ ...|+++|. .++++ .+...+.+.|+.+|.+... +.+|.|+|+
T Consensus 242 ~dal~~~vameIasLl~l--~---~~--------~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~Ai 307 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D---CK--------EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLAL 307 (326)
T ss_pred HHHHHHHHHHHHHhheec--c---CC--------CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHH
Confidence 567777777777655422 1 12 457999997 78898 9999999999999999865 779999999
Q ss_pred HHHHhcC
Q 046958 360 AAGLAIG 366 (417)
Q Consensus 360 lA~~~~G 366 (417)
+|---.|
T Consensus 308 IA~dI~g 314 (326)
T TIGR03281 308 IAEDIFS 314 (326)
T ss_pred HHHHHhC
Confidence 9964433
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.62 Score=49.51 Aligned_cols=75 Identities=25% Similarity=0.226 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc--cCCCChhHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR--PADIESTALGA 357 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~--~~~~e~salGa 357 (417)
.++++..+|-+.-.+++.. + +.+++..|+++||.++-|.+.+++.|.|+..-.. ....|+.|+||
T Consensus 311 ~dlf~~~~~~v~~~L~da~--~-----------dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GA 377 (620)
T KOG0101|consen 311 ADLFRSTLEPVEKALKDAK--L-----------DKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGA 377 (620)
T ss_pred hHHHHHHHHHHHHHHHhhc--c-----------CccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhH
Confidence 5666777776663332221 1 1234899999999999999999999999853332 34578999999
Q ss_pred HHHHHHhcCC
Q 046958 358 AFAAGLAIGV 367 (417)
Q Consensus 358 AllA~~~~G~ 367 (417)
|+.|+.-.|.
T Consensus 378 avqaa~~~g~ 387 (620)
T KOG0101|consen 378 AVQAAILSGD 387 (620)
T ss_pred HHHhhhccCC
Confidence 9999988774
|
|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.8 Score=41.43 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC--CcEEccC
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG--SPVLRPA 348 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~pv~~~~ 348 (417)
.-++-++++++|++..-|-.+.....-+ ++.|+++||.++++.++..+.+-+. .||.+.+
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~--------vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P 330 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGK--------VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP 330 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC--------CCEEEEecchhhHHHHHHHHHHHHhhhcceEecC
Confidence 3456678889999888777766544445 8999999999999999999999887 6777744
|
|
| >COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.40 E-value=2.7 Score=45.18 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC---cEE----ccC
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS---PVL----RPA 348 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~---pv~----~~~ 348 (417)
..+++.++.+...++|-.+..++..+.+..| +++|.++||..+|+.+++-+++.+.. .+. ++.
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~g----------i~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~ 732 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYG----------INKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPA 732 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCC
Confidence 3567778778788888877778777776445 78999999999999999999999974 233 344
Q ss_pred CCChhHHHHHHHHH
Q 046958 349 DIESTALGAAFAAG 362 (417)
Q Consensus 349 ~~e~salGaAllA~ 362 (417)
...+-++|=|++|+
T Consensus 733 ~DggIslGQ~v~~~ 746 (750)
T COG0068 733 GDGGISLGQAVAAA 746 (750)
T ss_pred CCCceeHHHHHHHH
Confidence 45577899888873
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.7 Score=47.90 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC-cEEccCCCChhH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPADIESTA 354 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~~e~sa 354 (417)
..|++.+=.-+--=|+-.+..+...|.. .+.. .+++++|.+.||++|-|-..+.+.++||+ |-.-+...|++|
T Consensus 319 ~~tr~efe~~v~~lI~Rti~p~~~aL~d-A~~~-----~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava 392 (640)
T KOG0102|consen 319 ELTRGEFEELVPSLIARTIEPCKKALRD-ASLS-----SSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVA 392 (640)
T ss_pred eecHHHHHHhhHHHHHhhhhHHHHHHHh-ccCC-----hhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhc
Confidence 3455554333333333444455555553 2321 23489999999999999999999999985 444566789999
Q ss_pred HHHHHHHHHhcCCCCC
Q 046958 355 LGAAFAAGLAIGVFKE 370 (417)
Q Consensus 355 lGaAllA~~~~G~~~~ 370 (417)
+|||+.+++-.|..+|
T Consensus 393 ~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 393 GGAAIQGGVLSGEVKD 408 (640)
T ss_pred cchhhccchhhccccc
Confidence 9999999887776654
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.4 Score=39.94 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=35.0
Q ss_pred CceEEEecCccccH--HHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNN--LLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~--~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G 366 (417)
++.|++.||.++.+ .+.+.+.+.+..++... ..+++++|||++|..-.+
T Consensus 264 Pe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 264 EDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGLALIARDIFN 314 (326)
T ss_pred CCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHHHHHHHHHhC
Confidence 67899999999876 56666666665443222 468999999999976543
|
|
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.5 Score=36.56 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred chHHHhHhcCcC--CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHH
Q 046958 163 GNQHAAMLGQAC--KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELAL 240 (417)
Q Consensus 163 ~D~~aa~lg~g~--~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~ 240 (417)
.|-.++++|+.- ...-+++..||+..+..+... +. |.-|.-.||... +.+.|.+.+.
T Consensus 107 ~DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~v~~~-------~~-----~lGG~I~PGi~l---------~~~aL~~~aa 165 (251)
T COG1521 107 ADRIANAVAAYHKYGKAVVVVDFGTATTIDLVDEG-------GR-----YLGGAILPGITL---------SFEALFARAA 165 (251)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCeEEEEEEcCC-------Cc-----EeeeEeccCHHH---------HHHHHHHHHh
Confidence 499999999877 333688999999877654421 21 111111244322 1222323333
Q ss_pred hcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceE
Q 046958 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320 (417)
Q Consensus 241 ~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 320 (417)
+.| .+.-.+.+ .+.| ..|.+.+...++-|.++.++..++.+++..+. -..+
T Consensus 166 ~lp---------~~~~~~~~--------~~~g---k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~---------~~~~ 216 (251)
T COG1521 166 KLP---------RVEIARPE--------SVPG---KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKG---------GDAV 216 (251)
T ss_pred cCC---------cccccCcc--------ccCC---cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCC---------CCeE
Confidence 333 22111111 2233 46899999999999999999999999876543 4689
Q ss_pred EEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHH
Q 046958 321 RVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362 (417)
Q Consensus 321 ~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~ 362 (417)
+++||.++ ++.+.+. .+ +.+ ..-+..|-+.++.
T Consensus 217 vltGg~~~------~~~~~~~-~~-~~d-~~Ltl~Gl~~i~~ 249 (251)
T COG1521 217 VLTGGLAK------LLLDELD-ID-IFD-PNLTLLGLALLLA 249 (251)
T ss_pred EEeCCchH------hhhhhcc-cc-eeC-cchhHHHHHHHhh
Confidence 99999885 3444444 22 222 3347777776653
|
|
| >KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.99 E-value=9.7 Score=37.38 Aligned_cols=160 Identities=18% Similarity=0.057 Sum_probs=89.5
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC-Cch-hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA-PTN-YALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~-~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+.+++||+--+..+.++.. |-.+-|... .+. |-|...+---++|+|+-++|.+-...+-=+++-...
T Consensus 176 yLLVNIGSGVSIlkV~~~~~----------feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIY 245 (371)
T KOG2201|consen 176 YLLVNIGSGVSILKVDGPDN----------FERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIY 245 (371)
T ss_pred eEEEEcCCCeEEEEEecCCc----------eeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhcc
Confidence 47889999865555443111 111112111 122 333333322368898888887632111113344444
Q ss_pred CCCCCCCCCCCceE----EEc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 256 GLLAPWWRDDARSV----CIG------ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 256 Ger~P~~~~~~rg~----~~G------l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
|-. |......|. =+| -....+++|++||+|--|..++-++.-.... ... +++|+..|-
T Consensus 246 Gg~--y~~fGL~~~~iASSFGk~~~~eK~~~~s~eDia~SlL~mIsnNIGqiAyl~A~--~~n--------i~rV~FgG~ 313 (371)
T KOG2201|consen 246 GGD--YSRFGLKGDLIASSFGKVIRKEKELSVSKEDIARSLLRMISNNIGQIAYLCAL--NEN--------IKRVYFGGF 313 (371)
T ss_pred Ccc--HhhcCCChhHHHHHHHHHhhcccccccChHHHHHHHHHHHHhhHHHHHHHHHH--HhC--------ccEEEEeee
Confidence 433 222222211 111 1234789999999999999999887543332 344 899999999
Q ss_pred ccc-cHHHHHHHHHhhCC----cEE--cc-CCCChhHHHHHH
Q 046958 326 ATV-NNLLMQIQADLLGS----PVL--RP-ADIESTALGAAF 359 (417)
Q Consensus 326 ~a~-s~~~~q~~Adv~g~----pv~--~~-~~~e~salGaAl 359 (417)
..| ++.-|..+|=..+- .++ .. .+..-+|+||-+
T Consensus 314 fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAfL 355 (371)
T KOG2201|consen 314 FIRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAFL 355 (371)
T ss_pred EEecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHHh
Confidence 988 78888988877652 111 12 234467777766
|
|
| >PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P) | Back alignment and domain information |
|---|
Probab=80.12 E-value=5 Score=37.89 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=50.2
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHHHHHhh-
Q 046958 271 IGITRFTSKAHFARAVLESMCFLVKD--------VLDSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLL- 340 (417)
Q Consensus 271 ~Gl~~~~~~~~l~rAvlEgia~~~~~--------~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~- 340 (417)
+|+..+.....++|.|.+.|.-.... ++..+.+..+.+ ...-.|-+.|+.- +.|.+.+.+.+.+
T Consensus 138 ~~~~~t~~d~~~lr~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~------~~~v~VavDGSv~~~~p~f~~~l~~~l~ 211 (243)
T PF03727_consen 138 FGLPPTEEDRQILRRICEAVSTRAARLVAAAIAAILNKIRENKGRP------RREVTVAVDGSVYEKYPNFRERLQEALD 211 (243)
T ss_dssp TTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCS------SEEEEEEEESHHHHHSTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccccc------CCceEEEEeCcceeeCHHHHHHHHHHHH
Confidence 34544333445567777776554332 333333211211 0012355567764 5677666655544
Q ss_pred ---C---CcEEccCCCChhHHHHHHHHHHhc
Q 046958 341 ---G---SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 341 ---g---~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+ .+|+.....|++.+|||++|+.+.
T Consensus 212 ~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 212 ELLPEEGCKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp HHSTT-CEEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred HhcccccceEEEEEecCchHHHHHHHHHHhc
Confidence 3 477777788999999999999863
|
The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 417 | ||||
| 2d4w_A | 504 | Crystal Structure Of Glycerol Kinase From Cellulomo | 5e-69 | ||
| 1gla_G | 501 | Structure Of The Regulatory Complex Of Escherichia | 7e-65 | ||
| 1bu6_O | 501 | Crystal Structures Of Escherichia Coli Glycerol Kin | 8e-65 | ||
| 3ezw_A | 526 | Crystal Structure Of A Hyperactive Escherichia Coli | 8e-65 | ||
| 1bwf_Y | 501 | Escherichia Coli Glycerol Kinase Mutant With Bound | 8e-65 | ||
| 2dpn_A | 495 | Crystal Structure Of The Glycerol Kinase From Therm | 1e-62 | ||
| 3g25_A | 501 | 1.9 Angstrom Crystal Structure Of Glycerol Kinase ( | 4e-61 | ||
| 2zf5_O | 497 | Crystal Structure Of Highly Thermostable Glycerol K | 3e-60 | ||
| 3h45_X | 506 | Glycerol Kinase H232e With Ethylene Glycol Length = | 1e-58 | ||
| 3d7e_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Mutant H | 1e-58 | ||
| 1r59_O | 505 | Enterococcus Casseliflavus Glycerol Kinase Length = | 2e-58 | ||
| 3h3n_X | 506 | Glycerol Kinase H232r With Glycerol Length = 506 | 2e-58 | ||
| 3flc_O | 518 | Crystal Structure Of The His-Tagged H232r Mutant Of | 2e-58 | ||
| 1xup_O | 487 | Enterococcus Casseliflavus Glycerol Kinase Complexe | 3e-58 | ||
| 4e1j_A | 520 | Crystal Structure Of Glycerol Kinase In Complex Wit | 1e-53 | ||
| 2w41_A | 507 | Crystal Structure Of Plasmodium Falciparum Glycerol | 1e-46 | ||
| 2w40_A | 503 | Crystal Structure Of Plasmodium Falciparum Glycerol | 2e-46 | ||
| 3gbt_A | 504 | Crystal Structure Of Gluconate Kinase From Lactobac | 5e-11 | ||
| 3hz6_A | 511 | Crystal Structure Of Xylulokinase From Chromobacter | 8e-04 |
| >pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504 | Back alignment and structure |
|
| >pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501 | Back alignment and structure |
|
| >pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501 | Back alignment and structure |
|
| >pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526 | Back alignment and structure |
|
| >pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501 | Back alignment and structure |
|
| >pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495 | Back alignment and structure |
|
| >pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501 | Back alignment and structure |
|
| >pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497 | Back alignment and structure |
|
| >pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506 | Back alignment and structure |
|
| >pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505 | Back alignment and structure |
|
| >pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505 | Back alignment and structure |
|
| >pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506 | Back alignment and structure |
|
| >pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518 | Back alignment and structure |
|
| >pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487 | Back alignment and structure |
|
| >pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520 | Back alignment and structure |
|
| >pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507 | Back alignment and structure |
|
| >pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503 | Back alignment and structure |
|
| >pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504 | Back alignment and structure |
|
| >pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium Violaceum Length = 511 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 1e-160 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 1e-159 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 1e-153 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 1e-152 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 1e-151 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 1e-150 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 1e-150 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 1e-148 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 3e-78 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 1e-74 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 2e-45 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 6e-44 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 8e-44 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 2e-35 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 1e-34 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 1e-32 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 1e-25 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504 | Back alignment and structure |
|---|
Score = 460 bits (1186), Expect = e-160
Identities = 154/349 (44%), Positives = 212/349 (60%), Gaps = 26/349 (7%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
DTW++W++TGG G +HVTDV+NASRTMLM+L TL W + +GIP + P I S+
Sbjct: 162 NTDTWVLWNMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSS 221
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
SE+ G + G+PI+G LG+Q AA GQAC + G+AK+TYGTG F+ LNTG E V
Sbjct: 222 SEVYGHGRPRGLVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVM 281
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
SK+GLL+T+ +K+G AP YALE D+LG+ +A ++E LA +V
Sbjct: 282 SKNGLLTTVCYKIG-DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDN 340
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
GG YFV AF+GL AP+WR DAR +G+TR+ ++ H ARA LE+ F ++V+D+ D+
Sbjct: 341 GGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADS 400
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
GV LRVDGG N LLMQ QAD LG V+RP E+TALGAA+AAG+A+
Sbjct: 401 ---GV-----DLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAV 452
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
G +K E+ + P + R++ + +AV +T D
Sbjct: 453 GFWKGEQDVID--NWAEDKRWSPSMESGERERLYRNWKKAVTKTMEWVD 499
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503 | Back alignment and structure |
|---|
Score = 458 bits (1181), Expect = e-159
Identities = 128/347 (36%), Positives = 191/347 (55%), Gaps = 29/347 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVS 139
I+TWLI++LT G TDV+NASRT+LM++ TL WD+ + I + P+I S
Sbjct: 166 NINTWLIFNLTKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKS 221
Query: 140 NSEIIGKIGKGC--PITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
N G + IPI+GC+G+Q +A +GQA +GEAK TYGTG F+ +NTGE+
Sbjct: 222 NCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEK 281
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALEDSL-------------GIISNASEIEELALRVN 243
VV S GL++T+ +K YALE S+ +I + SE ++ +
Sbjct: 282 VVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCE 341
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
+T G+ FV AF+GL AP WR DAR+ G+T T ++H RA+LE + F + +++DS
Sbjct: 342 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363
D G+ + VLR DGG T N MQ +D++ + + E T+LGAA AGL
Sbjct: 402 DM---GI----EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGL 454
Query: 364 AIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
+ ++ + S R ++ F ++++ RKKK +AVERT
Sbjct: 455 EVKIWDSLDSVKSLLR-RSDAVFHSKMDDKKRKKKTSEWNKAVERTL 500
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495 | Back alignment and structure |
|---|
Score = 441 bits (1137), Expect = e-153
Identities = 150/348 (43%), Positives = 199/348 (57%), Gaps = 30/348 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
T+DTWLIW+LTGG +H TD +NASRT+L NL TL WD LE LGIPA + P++ +
Sbjct: 162 TVDTWLIWNLTGG---KVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPS 218
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
G+ +PI G LG+Q AA+ GQA GE K TYGTGAF+ LNTG+ V
Sbjct: 219 DGDFGETLPELLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVL 278
Query: 200 SKHGLLSTLAFKLGPKAPTNYALEDS-------------LGIISNASEIEELALRVNSTG 246
S+ GLL+T+A+ LG + YALE S +G+I ++E+E LA V TG
Sbjct: 279 SEKGLLATVAWSLGGR--ATYALEGSLFVAGAAVGWLKEVGLIRESAEVEALAASVEDTG 336
Query: 247 GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306
+YFV AF GL AP+W AR +G+TR TS+AH ARA LE + F V+DV+ + +++A
Sbjct: 337 DVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEA- 395
Query: 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366
VL+ DGG N L ++IQADLLG PV P E+TALGAA AG+ G
Sbjct: 396 -------GVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAG 448
Query: 367 VFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
E++ + R + + F P + E R+ AVER A
Sbjct: 449 ALSPEDV---AGRFREAERFLPTMPEGRREALYRRWREAVERAKGWAR 493
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520 | Back alignment and structure |
|---|
Score = 440 bits (1133), Expect = e-152
Identities = 142/348 (40%), Positives = 191/348 (54%), Gaps = 28/348 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TIDT+LIW LTGG + TD +NASRT+L N+ WD E L +P E+ P++
Sbjct: 186 TIDTFLIWRLTGG---ECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDC 242
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
+ G IPI G G+Q AA +GQAC K G KSTYGTG F LNTG+++V+
Sbjct: 243 AADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVR 302
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
SK+ LL+T+A++L + T YALE D L +I A + LA + +
Sbjct: 303 SKNRLLTTIAYRLDGE--TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPS 360
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
+Y V AF GL AP W DAR G+TR T A FARA LE++C+ +D+L++ KD
Sbjct: 361 QEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDW 420
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
G VLRVDGG ++ MQ +DLL +PV RP +E+TALG A+ AG
Sbjct: 421 RRNGNDT------VLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRA 474
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLA 413
GV+ +E FA F+P ++E RK K + AV+RT A
Sbjct: 475 GVWPNQEAFAK--SWARDRRFEPHMDEATRKVKLKGWRSAVKRTLIAA 520
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-150
Identities = 147/350 (42%), Positives = 209/350 (59%), Gaps = 31/350 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TIDTWL+W L+G H+TD SNASRT++ N+ L+WD LE L +P + P++ ++
Sbjct: 166 TIDTWLVWKLSGK---AAHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKAS 222
Query: 141 SEIIGKIGKGCPI-TGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVV 198
SE+ GK +PI+G G+Q AA+ GQAC ++G+ K+TYGTG F+ +NTG++ V
Sbjct: 223 SEVYGKTIDYHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAV 282
Query: 199 KSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNS 244
KS+ GLL+T+A+ + K NYALE D L +I++A + E A RV+S
Sbjct: 283 KSESGLLTTIAYGIDGK--VNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDS 340
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
T G+Y V AF GL P+W +AR G+TR T K HF RA LES+C+ +DV+++ KD
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKD 400
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLA 364
+ G+ LRVDGGA NN +MQ QAD++ + V RP E+TALGAAF AGLA
Sbjct: 401 S---GI-----DVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLA 452
Query: 365 IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
+G ++ ++ A K F P ++E R+K +AVE T
Sbjct: 453 VGFWESKDDIAK--NWKLEEKFDPKMDEGEREKLYRGWKKAVEATQVFKT 500
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506 | Back alignment and structure |
|---|
Score = 435 bits (1120), Expect = e-150
Identities = 143/347 (41%), Positives = 201/347 (57%), Gaps = 31/347 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TID+WL+W LT G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++ SN
Sbjct: 165 TIDSWLVWKLTDG---QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSN 221
Query: 141 SEIIGKIGKGCPI-TGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVV 198
SE+ G + +PI+G G+Q AA+ GQ +KG K+TYGTGAFI +NTGEE
Sbjct: 222 SEVYGHTRSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQ 281
Query: 199 KSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNS 244
S + LL+T+ + + K YALE D L +I + + EELA +
Sbjct: 282 LSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKG 339
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
+Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+ +KD
Sbjct: 340 DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKD 399
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLA 364
+ G+ +L+VDGGA N+LLMQ QAD+L V R A++E+TALGAA+ AGLA
Sbjct: 400 S---GI-----DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLA 451
Query: 365 IGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFN 411
+G +K+ + S + F P + E R E +AV T
Sbjct: 452 VGFWKDLDELKS--MAEEGQMFTPEMPAEERDNLYEGWKQAVAATQT 496
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-148
Identities = 151/349 (43%), Positives = 204/349 (58%), Gaps = 35/349 (10%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
T+DT+LI+ LTG HVTD SNASRTML N+K LDWD LE IP + P++ +
Sbjct: 161 TVDTFLIYRLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRES 215
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
SE+ G K IP+SG G+Q AA+ GQA + G K+TYGTG+FI +NT + V+
Sbjct: 216 SEVYGYTKKELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLY 275
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
S LL+T+A+ L + +YALE D + II +ASE EELA ++ S
Sbjct: 276 S-DNLLTTIAWGLNGR--VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESN 332
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
G+YFV AF GL AP+W AR + IGITR T + H ARA LE++ +L +DV+ D
Sbjct: 333 EGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVV-----DE 387
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
+EK V LRVDGGAT N+ LMQ QAD+L V+RP E+TALGAA+ AGLA+
Sbjct: 388 MEKLV-----QIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAV 442
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
+ + A K F+P ++E+ R++ + AV+R A
Sbjct: 443 DYWADTREIAE--LWKAERIFEPKMDEKTRERLYKGWKEAVKRAMGWAK 489
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 3e-78
Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 46/331 (13%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
I ++I+ LTG VTD + A+ T ++NLKTL WD+ L+ L I E PKI
Sbjct: 156 GIKEYIIFRLTGK-----LVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQP 210
Query: 141 SEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
+++I I G + I + + + +G GT IR
Sbjct: 211 TKVIFPIKTEYVKKLGID-SDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIV 269
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNAS-EIEEL 238
+ + A T+Y L +L + ++
Sbjct: 270 DQPKIDPSASYFCYPA------DKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDV 323
Query: 239 ALRVNS-TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDV 297
A + + + F+ G AP W +AR +G+TR K ARAV+E + F + D
Sbjct: 324 AQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDA 383
Query: 298 LDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGA 357
+ K+ + + GG ++ + Q+ A++ P++ + +S L A
Sbjct: 384 ASNLIKNTKK---PVA------INATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAA 434
Query: 358 AFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388
F A A+G+ ++ + + + P
Sbjct: 435 MFLARQALGLNQDLSEIG--QFAQADKVYFP 463
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 1e-74
Identities = 58/349 (16%), Positives = 112/349 (32%), Gaps = 35/349 (10%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
+ + + LTG + +NA+ T L+N+ + DWD+ L G +
Sbjct: 159 LMPDYFSYRLTGK-----MNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHP 213
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
+IG ++ + +A++ A + GT + + + +
Sbjct: 214 GNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFES-QTPFT 272
Query: 200 SKHGLLSTLAFKLGPKAPTNYALEDSLGI------------ISNASEIEELALRVNSTGG 247
+ L + + + G A Y + ++ I++ + + +
Sbjct: 273 NDTALAANITNEGG--AEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRF 330
Query: 248 IYFVR--AFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
I F A + S A AR + +S+ L DVL +
Sbjct: 331 IINPNDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLR 390
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365
L + GG N LL Q+ AD G V+ +E++ LG + +
Sbjct: 391 -------GEDFS-QLHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTL 441
Query: 366 GVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLA 413
++ T TTF P N + + + +T L
Sbjct: 442 DELNNVDDFRQVVSTTANLTTFTP--NPDSEIAHYVALIHSTRQTKELC 488
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-45
Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 37/322 (11%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEII 144
+L +TG +D+S+A+ TM +++ DW L+ + + P + SEI
Sbjct: 155 YLRLRMTGE-----FASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEIT 209
Query: 145 G----KIGKGCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTGEEVVK 199
G ++ K + +P+ G+ A +G +A + GT + E +
Sbjct: 210 GALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS-EGFLS 268
Query: 200 SKHGLLSTLAFKLG----PKAPTNYA------LEDSLGIISNASEIEELALRVNS-TGGI 248
+ + L + A G +SN + A + + +
Sbjct: 269 KPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPV 327
Query: 249 YFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEK 308
+F+ +G P A+ V G+T ARAVLE + + + D +D
Sbjct: 328 WFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMD--------- 378
Query: 309 GVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-STALGAAFAAGLAIG 366
V+ + + + GG + Q+ AD+ G + + ALGAA A +A
Sbjct: 379 -VVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437
Query: 367 VFKEEEIFASSERTKTSTTFKP 388
K + + P
Sbjct: 438 PEKSLI--ELLPQLPLEQSHLP 457
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 6e-44
Identities = 59/337 (17%), Positives = 112/337 (33%), Gaps = 65/337 (19%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEII 144
++ LTG V D + A ++L + + + IP P ++
Sbjct: 166 YINMLLTGE-----RVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVL 220
Query: 145 GKIGK------GCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTGEEV 197
G + G P TG+P+ G + A+ L + G+ +G I + +
Sbjct: 221 GAVTAEAAALTGLP-TGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASAT-- 277
Query: 198 VKSKHGLLSTLAFKLGPKAPT-NYALED---SLGIISNA--------------------S 233
K P+ + + G ++ +
Sbjct: 278 ------------AKSDPRLYLDYHLVPGLYAPNGCMAATGSALNWLAKLLAPEAGEAAHA 325
Query: 234 EIEELALRVNS-TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCF 292
+++ LA V + G+ + F G P A G++ ++ H RA+LE++
Sbjct: 326 QLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALLEAVAL 385
Query: 293 LVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADIE 351
+ + V+ D G T + + M I AD+L PV A+
Sbjct: 386 AFRHHVA----------VLDDIGHAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPL 435
Query: 352 STALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388
+A+GAA+ A + G + + +T P
Sbjct: 436 GSAVGAAWVAAIGGGDDLGWD--DVTALVRTGEKITP 470
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 8e-44
Identities = 74/340 (21%), Positives = 119/340 (35%), Gaps = 44/340 (12%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRP 135
R ++ +++ LTG H TD +NAS T L K W L G ++ P
Sbjct: 155 RHVVLGAKDYVVLRLTGR-----HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMP 209
Query: 136 KIVSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQ-ACKKGEAKSTYGT-GA 187
+++ E +G + G +G P+ LG+ AA LG +A GT G
Sbjct: 210 RLLEPGEQVGGVSALAARQTGFV-SGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGW 268
Query: 188 FIRLNTGEEVVKSKHGLLSTLAFKLG----PKAPTNYA------LEDSLG---IISNASE 234
RL + V G + LA + AP A +G A
Sbjct: 269 LARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEY 328
Query: 235 IEELALRVNST---GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMC 291
A V G+ FV + P R +G+T T++A AVLE
Sbjct: 329 FHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAA 388
Query: 292 FLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIE 351
++ + ++ K +L+V GG + +++ AD L +L D
Sbjct: 389 LSLRWCAE----------LLGMEKVG-LLKVVGGGARSEAWLRMIADNLNVSLLVKPDAH 437
Query: 352 -STALGAAFAAGLAIGVFK--EEEIFASSERTKTSTTFKP 388
G A A + + ++ + + R S P
Sbjct: 438 LHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHP 477
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-35
Identities = 67/348 (19%), Positives = 112/348 (32%), Gaps = 67/348 (19%)
Query: 85 WLIWSLTGGVNGDLH--------VTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIR-- 134
WL W + G TD S+AS T+ + + ++ + + + AE
Sbjct: 170 WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEAAEGAKA 229
Query: 135 ----------PKIVSNSEIIGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGE 178
P ++ + G ++ G+ A LG G+
Sbjct: 230 AQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVE-GGCLLAPGGGDNAMASLGLGMAVGD 288
Query: 179 AKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNAS----- 233
+ GT + E G +S A +Y L N S
Sbjct: 289 VSISLGTSGVAAAIS-ENPTYDLTGAVSGFAD-----CTGHYLP---LACTINGSRILDA 339
Query: 234 ----------EIEELALRVNS-TGGIYFVRAFNGLLAPWWRDDARSVCIGITRF-TSKAH 281
E+ +LA GI V F+G P +A + G+T T++ +
Sbjct: 340 GRAALGVDYDELAKLAFASKPGANGITLVPYFDGERTPNR-PNATATFSGMTLANTTREN 398
Query: 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLL 340
ARA +E + +D L+ +I+ + + GG + + + +L
Sbjct: 399 LARAFVEGLLCSQRDCLE----------LIRSLGASITRILLIGGGAKSEAIRTLAPSIL 448
Query: 341 GSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388
G V RPA E A+GAA A + E A T +P
Sbjct: 449 GMDVTRPATDEYVAIGAARQAAWVLSGETEPP--AWQLTIDGVETGEP 494
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-32
Identities = 55/367 (14%), Positives = 107/367 (29%), Gaps = 86/367 (23%)
Query: 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP---AEIRPKIVSNS 141
+L W T + + WD + +G+ KI +
Sbjct: 170 FLTWRATKD-----ETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATV 224
Query: 142 EIIGKIGKGCPIT-----------GIPISGCLGNQHAAMLG----------QACKKGEAK 180
+ +G G ++ G +S + + HA +G A
Sbjct: 225 KPMGAP-LGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIA 283
Query: 181 STYGTGAFIRLNTGEEV---------------------------------VKSKHGLLST 207
GT + + H
Sbjct: 284 LIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343
Query: 208 LAFKLGPKAPTNYALEDSL--GIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDD 265
L + K T Y + + + I L I+ + F+G +P +
Sbjct: 344 LLEQAKNKGETIYEALNYILRQMAGEPENIAFLT------NDIHMLPYFHGNRSPRANPN 397
Query: 266 ARSVCIGITRFTSKAHFA---RAVLESMCFLVKDVLDSKQKDAVEKGV-IKDAKPEFVLR 321
+ G+ T+ A A ++++ + ++++ + G I +
Sbjct: 398 LTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIET----MNQNGYNIDT------MM 447
Query: 322 VDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTK 381
GG T N + +Q A+ G +L P + E+ LG+A +A GVF+ A + ++
Sbjct: 448 ASGGGTKNPIFVQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPE-AMAAMSR 506
Query: 382 TSTTFKP 388
T P
Sbjct: 507 IGKTVTP 513
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 44/328 (13%), Positives = 84/328 (25%), Gaps = 52/328 (15%)
Query: 72 ETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNAS-RTMLMNLKTLDWDKPTLETLGIP 130
+ + + + W LTG V++V++ + L + + D+ P + LG
Sbjct: 142 DVMANATLLPWAQYWAWFLTG-----RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRLGWA 195
Query: 131 AEIRPKIVSNSEIIGKIGKG-CPITG----IPISGCLGNQHAAMLGQAC-----KKGEAK 180
A IV + +G + TG + + L + +AA+L
Sbjct: 196 ARF-APIVRAGDTVGALLPAIAERTGLSPDVQVLAGLHDSNAALLAARGFAEIADNEATV 254
Query: 181 STYGTGAFIRLNTGEEVVKSKH----GLLSTLAFKLGPKAPTNYA-----------LEDS 225
+ GT V + L + P +
Sbjct: 255 LSTGTWFIAMRLPATPVDTATLPEARDCLVNVDVHGRPVPSARFMGGREIETLIEIDTRR 314
Query: 226 LGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARA 285
+ I + + V G + P+ I R A
Sbjct: 315 VDIKPDQPALLAAVPEVLR-HGRMILPTLMRGFGPYPHGRFA----WINRPEDWFERRAA 369
Query: 286 VLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPV 344
+ LD +I + V+G ++ ++ A L V
Sbjct: 370 ACLYAALVADTALD----------LIGSTGR---ILVEGRFAEADVFVRALASLRPDCAV 416
Query: 345 LRPADIESTALGAAFAAGLAIGVFKEEE 372
+ GA + E
Sbjct: 417 YTANAHNDVSFGALRLIDPGLRPQGELV 444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 47/355 (13%), Positives = 108/355 (30%), Gaps = 113/355 (31%)
Query: 76 RTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRT----MLMNLKTLDWDKPTLETLGIPA 131
+ L+TT VTD +A+ T + + TL D E +
Sbjct: 267 KILLTT--------------RFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLL 308
Query: 132 EIRPKIVSNSEIIGKIGKGCPITGIPISGCLGN-QHAAMLGQACKKGEAKSTYGTGAFIR 190
K + C +P N + +++ ++ + G A +
Sbjct: 309 ----KYL-----------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKH 349
Query: 191 LNTG--EEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELALRVNSTGGI 248
+N +++S +L ++ + D L + ++ I
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR------KMF---DRLSVFPPSAHIPT----------- 389
Query: 249 YFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEK 308
LL+ W D +S V+ + L K L
Sbjct: 390 -------ILLSLIWFDVIKSD----------------VMVVVNKLHKYSL---------- 416
Query: 309 GVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVF 368
V K K + ++ ++ ++++ L L + ++ + F + I +
Sbjct: 417 -VEKQPKESTI-------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 369 KEEEIF-------ASSERTKTSTTFKPL-LNEEFRKKKAESQCRAVERTFNLADL 415
++ + + E + T F+ + L+ F ++K A + ++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 100.0 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 100.0 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 100.0 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 100.0 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 100.0 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 100.0 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 100.0 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 100.0 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 100.0 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 100.0 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 100.0 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 100.0 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 100.0 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 100.0 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 100.0 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 100.0 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 100.0 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 99.24 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 98.0 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.93 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.87 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 97.3 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 97.22 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 97.2 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 97.18 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 97.14 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 96.69 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 96.6 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.58 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 96.54 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.49 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 96.41 | |
| 3vth_A | 761 | Hydrogenase maturation factor; carbamoyltransfer, | 96.05 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 95.97 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 95.86 | |
| 3ttc_A | 657 | HYPF, transcriptional regulatory protein; Zn finge | 95.82 | |
| 4g9i_A | 772 | Hydrogenase maturation protein HYPF; zinc finger, | 95.64 | |
| 3cqy_A | 370 | Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1 | 95.59 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 95.28 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 95.1 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 95.03 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 93.59 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 93.55 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 92.7 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 88.15 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 85.77 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 85.61 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 83.65 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 81.87 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 81.86 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 80.32 | |
| 2aa4_A | 289 | Mannac kinase, putative N-acetylmannosamine kinase | 80.15 |
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=601.90 Aligned_cols=376 Identities=22% Similarity=0.250 Sum_probs=332.3
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEec-hhhH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTT-IDTW 85 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~-~~dy 85 (417)
.+|.+|+||+|+|+|+|+|+.++++++. +||+++++.++++||+|+++|+|+ +++++.+|++ ++||
T Consensus 88 ~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~l~~~~dy 164 (511)
T 3hz6_A 88 PLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQ---AFGRLRHVVLGAKDY 164 (511)
T ss_dssp EECTTSCBSSCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHH---HHTTCCEEECSHHHH
T ss_pred EECCCcCCCcCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChH---HHHHHHHHhcCcHHH
Confidence 5688899999999999999999877652 579999999999999999999996 7899999999 9999
Q ss_pred HHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEE
Q 046958 86 LIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPIS 159 (417)
Q Consensus 86 i~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~ 159 (417)
|.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+|++ | |++|+||+
T Consensus 165 l~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~~~G-l~~g~pV~ 238 (511)
T 3hz6_A 165 VVLRLTG-----RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTG-FVSGTPVL 238 (511)
T ss_dssp HHHHHHS-----CCEECHHHHHHTTCEETTTTEECHHHHHHTTCCGGGSCEECCTTSEEEECCHHHHHHHC-CCTTCEEE
T ss_pred HHHHHhC-----CceeeHhHhhcccceeCCCCCcCHHHHHHhCCCHHHCCCCcCCCCcccccCHHHHHhhC-CCCCCeEE
Confidence 9999999 8999999999999999999999999999999999999999999999999974 7 89999999
Q ss_pred eccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceecc-CCCceeeeceecCC-------CCCchhhhh---hhcC
Q 046958 160 GCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKS-KHGLLSTLAFKLGP-------KAPTNYALE---DSLG 227 (417)
Q Consensus 160 ~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~-~~g~~~~~~~~~g~-------~~~~~~~l~---~~~~ 227 (417)
+|++|++|+++|+|+ ++|++++++|||+++.++++.+|..+ +.+...+++|.+++ ...++..++ +.|+
T Consensus 239 ~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~ 318 (511)
T 3hz6_A 239 CGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVG 318 (511)
T ss_dssp CCEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHHHHHGGGGT
T ss_pred EECchHHHHHHhCCCCCCCcEEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEEeehhhHHHHHHHHHHHhc
Confidence 999999999999999 99999999999999988775256666 66666556553311 112222232 5565
Q ss_pred --CCCcHHHHHHHHHhc-CC---CCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046958 228 --IISNASEIEELALRV-NS---TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301 (417)
Q Consensus 228 --~~~~~~~l~~~a~~~-~~---~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l 301 (417)
...+|++++++++++ |+ ++|++|+|||.|||+|+||+++||+|+||+..|+++||+||++|||||++|++++.|
T Consensus 319 ~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l 398 (511)
T 3hz6_A 319 HRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL 398 (511)
T ss_dssp CCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999887 58 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcE-EccCCCChhHHHHHHHHHHhcCCCCCHHHHHhcc--
Q 046958 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPV-LRPADIESTALGAAFAAGLAIGVFKEEEIFASSE-- 378 (417)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv-~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~-- 378 (417)
++ |. +++|+++||++||++|+|++||++|+|| +++...|++|+|||++|+.++|.++|++++.+++
T Consensus 399 ~~--g~---------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~~~~~~ 467 (511)
T 3hz6_A 399 GM--EK---------VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADL 467 (511)
T ss_dssp TG--GG---------CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHHHTTSCSCHHHHHHHHHT
T ss_pred hc--CC---------CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHHHhCCcCCHHHHHHHhhc
Confidence 86 43 4789999999999999999999999999 9988999999999999999999999997776776
Q ss_pred -ccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhccc
Q 046958 379 -RTKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNLA 413 (417)
Q Consensus 379 -~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~ 413 (417)
. +..++|+|++++++.| ++|++|+++|+.++++.
T Consensus 468 ~~-~~~~~~~P~~~~~~~y~~~y~~~~~~~~~l~~~~ 503 (511)
T 3hz6_A 468 RE-PASNILHPQPCDEGRRRRKFERFKQCVETLGRLD 503 (511)
T ss_dssp C----CCCBCCCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred cC-CCCeEECcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 5678999999999988 58999999999988765
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-74 Score=600.29 Aligned_cols=381 Identities=37% Similarity=0.557 Sum_probs=334.4
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|.+ |+|++|+|+|+|+|+.++++++. +||.++++.++++||+|+++|+|+ +++++.+ |++
T Consensus 89 ~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe---~~~~~~~~~~~~~~ 165 (506)
T 3h3n_X 89 VWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG---AQEKADNGELLFGT 165 (506)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTT---HHHHHHTTCEEEEC
T ss_pred EEeCCCCeECCCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHH---HHHHHhcCCeEEec
Confidence 47776 99999999999999999877653 579999999999999999999997 6777654 888
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCC-CCCCCcEEe
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGC-PITGIPISG 160 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~-l~~g~pV~~ 160 (417)
++|||.|+|||+ .++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.+++.. +.+|+||++
T Consensus 166 ~~dyl~~~LTG~---~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~lg~g~pV~~ 242 (506)
T 3h3n_X 166 IDSWLVWKLTDG---QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIAG 242 (506)
T ss_dssp HHHHHHHHHTTT---SCCEEEHHHHHTTTSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCGGGTTTCCCEEEE
T ss_pred HHHHHHHHhcCC---ceeeeEHHHhhhhhCeecCCCCcCHHHHHHcCcCHHHCCceecCCCcceeeChHHhcCCCCeEEE
Confidence 999999999993 1479999999999999999999999999999999999999999999999998643 448999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC---------CCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP---------KAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+ ++|++++++|||+++.++++..|..++.+++.+++|..++ ...++..++ +.|+
T Consensus 243 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~~~~W~~~~~~ 322 (506)
T 3h3n_X 243 MAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGLR 322 (506)
T ss_dssp EEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCSSHHHHHHHHTSC
T ss_pred ECCcHHHHHHhCCCCCCCcEEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhHHHHHHHHHHHcC
Confidence 99999999999999 9999999999999887777555665666776656554321 011222222 4566
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
...+|++++++++++|..++++|+|||.|||+|+||+++||+|+|++..|+++||+||++|||||++|++++.|++..|.
T Consensus 323 ~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~ 402 (506)
T 3h3n_X 323 MIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGI 402 (506)
T ss_dssp CCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55678999999988876699999999999999999999999999999999999999999999999999999999986687
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEe
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFK 387 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~ 387 (417)
+ +++|+++||++||++|+||+||++|+||+++...|++|+|||++|+.++|.++|++++ .++ .+..++|+
T Consensus 403 ~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~-~~~-~~~~~~~~ 472 (506)
T 3h3n_X 403 D--------IPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSM-AEEGQMFT 472 (506)
T ss_dssp C--------CCEEEEESGGGGCHHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHHTTSSCSHHHH-HTT-CCCCCEEC
T ss_pred C--------CCEEEEecccccCHHHHHHHHHHhCCeEEecCCCcchhHHHHHHHHHHhCccCCHHHH-HHh-cCCCeEEC
Confidence 7 8999999999999999999999999999999999999999999999999999999997 445 36789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccc
Q 046958 388 PLLNEEFRKKKAESQCRAVERTFNLA 413 (417)
Q Consensus 388 P~~~~~~~y~~y~~~~~~~~~~~~~~ 413 (417)
|+++.+++.++|++|++++++.++|.
T Consensus 473 P~~~~~~~~~~y~~~~~~~~~~~~~~ 498 (506)
T 3h3n_X 473 PEMPAEERDNLYEGWKQAVAATQTFK 498 (506)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99998765579999999999999875
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=600.87 Aligned_cols=382 Identities=37% Similarity=0.586 Sum_probs=335.6
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|.+ |+|++|+|+|+|+|+.+++++++ ++|.++++.++++||+|+++|+|+ +++++.+ |++
T Consensus 90 ~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~l~~~ 166 (501)
T 3g25_A 90 VWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEG---AREKAENGDLLFGT 166 (501)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTT---HHHHHHTTCEEEEE
T ss_pred EEECCCCeECCCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHH---HHHHHhcCCeEEec
Confidence 46777 99999999999999999877653 579999999999999999999997 6777765 888
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccC-CCCCCCcEEe
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKG-CPITGIPISG 160 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g-~l~~g~pV~~ 160 (417)
++|||.|+|||+ .++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|++++. .+.+|+||++
T Consensus 167 ~~dyl~~~LTG~---~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~~g~g~pV~~ 243 (501)
T 3g25_A 167 IDTWLVWKLSGK---AAHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDYHFYGQEVPIAG 243 (501)
T ss_dssp HHHHHHHHHTTT---SCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEECCGGGTTTCCCEEEE
T ss_pred HHHHHHHHhcCC---CeeeeeHHHhhcccCeeCCCCCCCHHHHHHhCcCHHHCCceecCCCceeccchHHhCCCCCeEEE
Confidence 999999999993 248899999999999999999999999999999999999999999999999852 1458999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC---------CCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP---------KAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+ ++|++++++|||+++.+.+++.|..++.+++.+++|..++ ...++..++ +.|+
T Consensus 244 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~ 323 (501)
T 3g25_A 244 VAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGIDGKVNYALEGSIFVSGSAIQWLRDGLR 323 (501)
T ss_dssp EEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSTHHHHHHHHTSC
T ss_pred ECccHHHHHHhCCCCCCCcEEEEccchhheeeecCCccccCCCCeEEEeeEecCCccEEEEecccccHHHHHHHHHHHcC
Confidence 99999999999999 9999999999999887777656666666776666554321 011222222 4566
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
...+|++++++++++|..++++|+|||.|||+|+||+++||+|+|++..|+++||+||++|||||++|++++.|++..|.
T Consensus 324 ~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l~~~~g~ 403 (501)
T 3g25_A 324 MINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKDSGI 403 (501)
T ss_dssp CCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55678999999988876799999999999999999999999999999999999999999999999999999999876687
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEe
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFK 387 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~ 387 (417)
+ +++|+++||++||++|+|++||++|+||+++...|++|+|||++|+.++|.++|++++ +++ .+..++|+
T Consensus 404 ~--------~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~~~~~~~-~~~-~~~~~~~~ 473 (501)
T 3g25_A 404 D--------VQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKDDI-AKN-WKLEEKFD 473 (501)
T ss_dssp C--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCTHHH-HHH-CCEEEEEC
T ss_pred C--------CcEEEEecchhcCHHHHHHHHHHhCCceEecCCCcchHHHHHHHHHHHhCccCCHHHH-HHh-ccCCeEEC
Confidence 7 8999999999999999999999999999999999999999999999999999999997 455 36789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccc
Q 046958 388 PLLNEEFRKKKAESQCRAVERTFNLAD 414 (417)
Q Consensus 388 P~~~~~~~y~~y~~~~~~~~~~~~~~~ 414 (417)
|+++++++.++|++|++++++.++|.-
T Consensus 474 P~~~~~~~~~~y~~~~~~~~~~~~~~~ 500 (501)
T 3g25_A 474 PKMDEGEREKLYRGWKKAVEATQVFKT 500 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 999987655799999999999998853
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-75 Score=602.43 Aligned_cols=374 Identities=18% Similarity=0.149 Sum_probs=327.3
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+|++|+|+|+|+|+.+++++++ +||+++++.++++||+|+++|+|+ +++++.+|++++|||
T Consensus 91 ~~D~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~l~~~dyl 167 (508)
T 3ifr_A 91 LLDDRGAVLRPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPA---VFGAIATVCGSYDYI 167 (508)
T ss_dssp EECTTSCBCSCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHH---HHHTCSEEECHHHHH
T ss_pred EECCCCCCcccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHH---HHHHHhhhcCchHHH
Confidence 5788899999999999999999877652 679999999999999999999997 789999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 168 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~~~G-l~~g~pV~~ 241 (508)
T 3ifr_A 168 NMLLTG-----ERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTG-LPTGLPVYG 241 (508)
T ss_dssp HHHHHC-----CCCEEHHHHHHHTCEETTTTEECHHHHHTTTSCGGGSCCEECTTSEEEECCHHHHHHHC-CCTTCEEEC
T ss_pred HHHhcC-----CccccHhHhhcccCccCccCCCCHHHHHHcCCCHHHCCCCcCCCCeeeccCHHHHHHhC-CCCCCeEEE
Confidence 999999 8899999999999999999999999999999999999999999999999984 7 999999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh---hhcCCC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE---DSLGII 229 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~---~~~~~~ 229 (417)
|++|++|+++|+|+ ++|++++++|||+++.++++ +|..++. ..++++...+ ...++..++ +.|+..
T Consensus 242 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~~ 318 (508)
T 3ifr_A 242 GAADHIASALAAGITRPGDVLLKFGGAGDIIVASA-TAKSDPR--LYLDYHLVPGLYAPNGCMAATGSALNWLAKLLAPE 318 (508)
T ss_dssp CEEHHHHHHHHTTCCSTTEEEEEESSSEEEEECBS-CCCCBTT--BBCCBCSSTTCBCCEEEESSSHHHHHHHHHHHSTT
T ss_pred ECchHHHHHHhCCCCCCCcEEEEechhhhheeeCC-CcccCCC--cceeeeecCCceEEechhhhhHHHHHHHHHHHhhc
Confidence 99999999999999 99999999999999988875 4555443 3345543211 011222222 445311
Q ss_pred -C--cHHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046958 230 -S--NASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305 (417)
Q Consensus 230 -~--~~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 305 (417)
. +|+++++++++. ++++|++|+|||.|||+|+|||++||+|+|++..|+++||+||++|||||++|++++.|++ .
T Consensus 319 ~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~ 397 (508)
T 3ifr_A 319 AGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVLDD-I 397 (508)
T ss_dssp CTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 2 699999998876 5899999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcE
Q 046958 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTT 385 (417)
Q Consensus 306 g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~ 385 (417)
|.+ +++|+++||++||++|+|++||++|+||++++..|++|+|||++|+.++|.++|++++. ++ .+..++
T Consensus 398 g~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~-~~-~~~~~~ 467 (508)
T 3ifr_A 398 GHA--------PQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGDDLGWDDVT-AL-VRTGEK 467 (508)
T ss_dssp TCC--------CCEEEEESGGGGCHHHHHHHHHHHTSCEEEEECCSTHHHHHHHHHHHHTCSSCCGGGGG-GG-SEEEEE
T ss_pred CCC--------CCEEEEeCCcccCHHHHHHHHHHhCCeEEecCCCCchHHHHHHHHHHHhCCCCCHHHHH-hh-cCCCeE
Confidence 877 89999999999999999999999999999999899999999999999999999999874 45 367889
Q ss_pred EeCCCCHHHHH-HHHHHHHHHHHHHhccc
Q 046958 386 FKPLLNEEFRK-KKAESQCRAVERTFNLA 413 (417)
Q Consensus 386 ~~P~~~~~~~y-~~y~~~~~~~~~~~~~~ 413 (417)
|+|++++++.| ++|++|+++|++++++.
T Consensus 468 ~~P~~~~~~~y~~~y~~~~~~~~~~~~~~ 496 (508)
T 3ifr_A 468 ITPDPAKAEVYDRLYRDFSALYATLHPFF 496 (508)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 58999999999988743
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-74 Score=599.63 Aligned_cols=373 Identities=22% Similarity=0.274 Sum_probs=328.3
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|+|+.++++++. +||+++++.++++||+|+++|+|+ +++++.+|++++|||
T Consensus 85 ~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe---~~~~~~~~~~~~dyl 161 (504)
T 3ll3_A 85 GLGSDDELLTNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTE---VFSQAQKWIGIKEYI 161 (504)
T ss_dssp EECTTSCBSSCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHH---HHHHCCEEECHHHHH
T ss_pred EECCCCCCcccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChH---HHHHHhheeCHHHHH
Confidence 4678899999999999999999877653 679999999999999999999997 789999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 162 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~l~~~~a~~~G-l~~g~pV~~ 235 (504)
T 3ll3_A 162 IFRLTG-----KLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLG-IDSDTKIIL 235 (504)
T ss_dssp HHHHHS-----CCEEEHHHHTTTTCBCTTTSSBCHHHHHHHTCCGGGSCEEECTTCEECCCCHHHHHHHT-CCTTCEEEE
T ss_pred HHHHhC-----CcccchhHhhcccCeeCCCCCcCHHHHHHcCCCHHHCCCeeCCcceeeccCHHHHHhcC-CCcCCCEEE
Confidence 999999 8999999999999999999999999999999999999999999999999974 7 899999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC--------CCCCchhhhh---hhcCC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG--------PKAPTNYALE---DSLGI 228 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g--------~~~~~~~~l~---~~~~~ 228 (417)
|++|++|+++|+|+ ++|++++++|||+++.++++ +|..++.+.+ ++|... ....++..++ +.|+.
T Consensus 236 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~ 312 (504)
T 3ll3_A 236 GASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVD-QPKIDPSASY--FCYPADKTHYLLGGPVNNGGIVFNWARQTLFD 312 (504)
T ss_dssp EEEHHHHHHHTTTCCSTTEEEEEESSSEEEEEEES-SCCCCTTCCS--EEEEEETTEEEEEEEESCSHHHHHHHHHHHTC
T ss_pred EccHHHHHHHhCCCCCCCcEEEEechhhhheeeCC-CcccCCCCce--EEEEeCCCeEEEEeehhhHHHHHHHHHHHhcc
Confidence 99999999999999 99999999999999988875 5555555543 333221 1112222222 34432
Q ss_pred -CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046958 229 -ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306 (417)
Q Consensus 229 -~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g 306 (417)
...++++.++++++| +++|++|+|||.|||+|+||+++||+|+||+..|+++||+||++|||||++|++++.|++. |
T Consensus 313 ~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~-g 391 (504)
T 3ll3_A 313 ADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASNLIKN-T 391 (504)
T ss_dssp TTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred chhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 234555555777775 7899999999999999999999999999999999999999999999999999999999874 6
Q ss_pred ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEE
Q 046958 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTF 386 (417)
Q Consensus 307 ~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~ 386 (417)
.+ +++|+++||++||++|+||+||++|+||++++..|++|+|||++|+.++|.++|++++ +++ .+..++|
T Consensus 392 ~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~-~~~-~~~~~~~ 461 (504)
T 3ll3_A 392 KK--------PVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQDLSEI-GQF-AQADKVY 461 (504)
T ss_dssp CC--------CSEEEEESGGGCSHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSCCSGGGG-GGT-SCEEEEE
T ss_pred CC--------CCEEEEeCchhcCHHHHHHHHHhhCCeEEecCCCCchhHHHHHHHHHHcCccCCHHHH-HHh-cCCCeEE
Confidence 66 8999999999999999999999999999999999999999999999999999999875 666 3678999
Q ss_pred eCCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 387 KPLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 387 ~P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
+|++++++.| ++|++|+++|++++++
T Consensus 462 ~P~~~~~~~Y~~~y~~y~~l~~~l~~~ 488 (504)
T 3ll3_A 462 FPNPKEAATYQKLFPLYCEIRNALAAS 488 (504)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 5899999999998874
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=601.01 Aligned_cols=377 Identities=37% Similarity=0.553 Sum_probs=325.1
Q ss_pred ccc-cCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccce----EEec
Q 046958 17 NLG-FIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRT----LMTT 81 (417)
Q Consensus 17 ~~~-~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~----~~~~ 81 (417)
.+| .+|+|++|+|+|+|+|+.+++++++ +||.++++.++++||+|+++|+|+ +++++. .|++
T Consensus 110 ~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~~~~~~~~~ 186 (520)
T 4e1j_A 110 VWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKG---AQVRAAKGELCFGT 186 (520)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTT---HHHHHHTTCEEEEE
T ss_pred EEECCCCeECccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChH---HHHHHhcCCeEecC
Confidence 477 5899999999999999999887653 579999999999999999999997 677765 4778
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc-CCCCCCCcEEe
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK-GCPITGIPISG 160 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-g~l~~g~pV~~ 160 (417)
++|||.|+|||. ...++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.++. + |++|+||++
T Consensus 187 ~~dyl~~~LTG~---~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~-l~~g~pV~~ 262 (520)
T 4e1j_A 187 IDTFLIWRLTGG---ECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSL-FGAAIPILG 262 (520)
T ss_dssp HHHHHHHHHTTT---CCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGSCEEECSBSCCCBCCHHH-HTSCCBEEE
T ss_pred HHHHHHHHhcCC---CeeeecHHHhhhhcccccccCCCCHHHHHHcCCCHHHCCceecCCCceeeeChhh-CCCCCeEEE
Confidence 999999999992 02799999999999999999999999999999999999999999999999975 5 778999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC---------CCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP---------KAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+ ++|++++++|||+++.++++++|..++.+++.+++|..+. ...++..++ +.|+
T Consensus 263 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~ 342 (520)
T 4e1j_A 263 VAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLK 342 (520)
T ss_dssp ECCHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTTC
T ss_pred ECCcHHHHHHhCCCCCCCcEEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHHHHHHHHcC
Confidence 99999999999999 9999999999999887777556666666776555554321 011222222 4566
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD--- 304 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~--- 304 (417)
...+|++++++++++|++++++|+|||.|||+|+||+++||+|+||+..|+++||+||++|||||++|++++.|++.
T Consensus 343 ~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~ 422 (520)
T 4e1j_A 343 VIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRR 422 (520)
T ss_dssp CC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55678899999998889999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCc
Q 046958 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTST 384 (417)
Q Consensus 305 ~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~ 384 (417)
.| + +++|+++||++||++|+||+|||+|+||++++..|++|+|||++|+.++|.|+|++++. ++ .+..+
T Consensus 423 ~g-~--------~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~~~-~~-~~~~~ 491 (520)
T 4e1j_A 423 NG-N--------DTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFA-KS-WARDR 491 (520)
T ss_dssp -------------CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCCCHHHHHHHHHHHHHHTSSCCHHHHH-HT-CCEEE
T ss_pred CC-C--------cceEEEeCccccCHHHHHHHHHHhCCeEEecCCCccHHHHHHHHHHHHcCCcCCHHHHH-hh-cCCCe
Confidence 47 6 89999999999999999999999999999999999999999999999999999999985 44 36788
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHhc
Q 046958 385 TFKPLLNEEFRKKKAESQCRAVERTFN 411 (417)
Q Consensus 385 ~~~P~~~~~~~y~~y~~~~~~~~~~~~ 411 (417)
+|+|+++++++.++|++|++++++.++
T Consensus 492 ~~~P~~~~~~~~~~y~~~~~~~~~~~~ 518 (520)
T 4e1j_A 492 RFEPHMDEATRKVKLKGWRSAVKRTLI 518 (520)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999988865799999999999764
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-74 Score=600.60 Aligned_cols=384 Identities=38% Similarity=0.577 Sum_probs=329.1
Q ss_pred cccc-CCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGF-IFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~-~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|. +|+||+|+|+|+|+|+.++++++. +||.++++.++++||+|+++|.|+ +++++.+ +..
T Consensus 88 ~~D~~~G~pl~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~---~~~~~~~~~~~~~~ 164 (526)
T 3ezw_A 88 VWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEG---SRERARRGELLFGT 164 (526)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTT---HHHHHHTTCEEEEC
T ss_pred EEECCCCeEcccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCch---HHHHHHHhhhhccc
Confidence 3554 499999999999999999987663 579999999999999999999997 5666654 677
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCC-CCCCCcEEe
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGC-PITGIPISG 160 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~-l~~g~pV~~ 160 (417)
+++||.|+|||+ ...++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.++..+ +..|+||++
T Consensus 165 i~~~L~~~Lt~g---~~~~td~s~As~t~l~d~~~~~w~~~ll~~~gi~~~~LP~i~~~~~~~G~~~~~~~~~~gipV~~ 241 (526)
T 3ezw_A 165 VDTWLIWKMTQG---RVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGGTRIPISG 241 (526)
T ss_dssp HHHHHHHHHTTT---SCCEEEHHHHTTSSSEETTTTEECHHHHHHHTCCGGGCCEEECSEEEEEEECTTCTTSCCEEEEE
T ss_pred hhHHHhhhhcCC---CceEEEchhhccccCcCccccCcCHHHHHHcCCCHHHCCCccccccccCccchhhhcCCCCcEEE
Confidence 899999999974 2578999999999999999999999999999999999999999999999998653 567999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceec---------CCCCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKL---------GPKAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~---------g~~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+ ++|++.+++|||+++.++++..+..+..+......+.. |....++..++ +.|+
T Consensus 242 g~gD~~aa~~G~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~ 321 (526)
T 3ezw_A 242 IAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMK 321 (526)
T ss_dssp EEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSC
T ss_pred EcchHHHHhhhccccccceeEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 99999999999999888886555445555443322211 10011222222 4565
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
......+.+.++...++++|++|+|||.|+|+|+|||++||+|+||+..|+++||+||++|||||++|++++.|++.+|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~ 401 (526)
T 3ezw_A 322 LINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGI 401 (526)
T ss_dssp CCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54333334455556678999999999999999999999999999999999999999999999999999999999877788
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEe
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFK 387 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~ 387 (417)
+ +++|+++||++||++|+||+|||+|+||++++..|++|+|||++|++++|.|+|++++.+.+ ...++|+
T Consensus 402 ~--------~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~alGAA~lA~~a~G~~~~~~e~~~~~--~~~~~~~ 471 (526)
T 3ezw_A 402 R--------LHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKA--VIEREFR 471 (526)
T ss_dssp C--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCGGGSTTCC--CEEEEEC
T ss_pred C--------CCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCCchHHHHHHHHHHHHhCCCCCHHHHHHhc--CCCeEEc
Confidence 8 99999999999999999999999999999999999999999999999999999999985554 5688999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccccc
Q 046958 388 PLLNEEFRKKKAESQCRAVERTFNLADLS 416 (417)
Q Consensus 388 P~~~~~~~y~~y~~~~~~~~~~~~~~~~~ 416 (417)
|+++++++|++|++|++++++.++|...+
T Consensus 472 P~~~~~~~~~~y~~w~~av~r~~~w~~~~ 500 (526)
T 3ezw_A 472 PGIETTERNYRYAGWKKAVKRAMAWEEHD 500 (526)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 99999998999999999999999887653
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-72 Score=583.30 Aligned_cols=378 Identities=33% Similarity=0.508 Sum_probs=332.8
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|.+ |+|++|+|+|+|.|+.++++++. +||.++++.++++||+|+++|+|+ +++++.+ |++
T Consensus 90 ~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~~~ 166 (503)
T 2w40_A 90 IWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPE---IKQKIDDGTAVIGN 166 (503)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHH---HHHHHHTTCEEEEE
T ss_pred EEECCCCcCCccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChH---HHHHHhcCCeEEEC
Confidence 46776 99999999999999999877653 579999999999999999999997 7888776 999
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCcceeeeccCCCCC--CCcE
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSEIIGKIGKGCPIT--GIPI 158 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~g~l~~--g~pV 158 (417)
++|||.|+|||+ ++++|+|+||+|++||+++++||+++|+.+||+ .++||+|+++++++|++++..+.+ |+||
T Consensus 167 ~~d~l~~~LTG~----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~~lP~i~~~~~~~G~~~~~~~g~~~g~pV 242 (503)
T 2w40_A 167 INTWLIFNLTKG----NCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPI 242 (503)
T ss_dssp HHHHHHHHHHTS----CCEEEHHHHTTTTCBCTTTCSBCHHHHHHTTCCCGGGSCEEECSEEEEEECCCTTSGGGTTCEE
T ss_pred HHHHHHHHHcCC----CccccHHHhhhhcCccCCCCccCHHHHHHcCCChHHHCCCccCCcCceeeccHHHcCCCCCceE
Confidence 999999999992 499999999999999999999999999999999 999999999999999998642235 8999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-----------CCCchhhhh---
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-----------KAPTNYALE--- 223 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-----------~~~~~~~l~--- 223 (417)
++|++|++|+++|+++ ++|++++++|||+++.++++++|..++.+.+..++|..++ ...++..++
T Consensus 243 ~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~g~~~~w~~ 322 (503)
T 2w40_A 243 TGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLL 322 (503)
T ss_dssp EEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEEESCSHHHHHHHH
T ss_pred EEECchHHHHHHhCCCCCCCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEechhhhhHhHHHHHH
Confidence 9999999999999999 9999999999999998877545666656666666665421 001122222
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 303 (417)
+ ++..++|++++++++++++++|++|+|||.|+|+|+||+++||+|+||+..|+++|++||++|||||++|++++.|++
T Consensus 323 ~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 401 (503)
T 2w40_A 323 K-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401 (503)
T ss_dssp H-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 665567899999998888889999999999999999999999999999999999999999999999999999999987
Q ss_pred hccccccccCCCCC-ceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCC
Q 046958 304 DAVEKGVIKDAKPE-FVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKT 382 (417)
Q Consensus 304 ~~g~~~~~~~~~~~-~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~ 382 (417)
..|.+ + ++|+++||++||++|+|++||++|+||+++...|++|+|||++|+.++|.++|++++.+.+. +.
T Consensus 402 ~~g~~--------~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e~~alGaA~la~~~~G~~~~~~~~~~~~~-~~ 472 (503)
T 2w40_A 402 DMGIE--------MLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLR-RS 472 (503)
T ss_dssp HHTCS--------CCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTCSSCHHHHHHHHT-CE
T ss_pred hcCCC--------ccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCcchHHHHHHHHHHHhCccCCHHHHHHhcc-CC
Confidence 56776 7 89999999999999999999999999999999999999999999999999999999877653 56
Q ss_pred CcEEeCCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 383 STTFKPLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 383 ~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
.++|+|++++ +.| ++|++|+++|++.++|
T Consensus 473 ~~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~ 502 (503)
T 2w40_A 473 DAVFHSKMDD-KKRKKKTSEWNKAVERTLIQ 502 (503)
T ss_dssp EEEECCCSCH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CcEEccCCCH-HHHHHHHHHHHHHHHHHhhc
Confidence 7899999998 878 5899999999998765
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=583.07 Aligned_cols=382 Identities=39% Similarity=0.621 Sum_probs=334.8
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|.+ |+|++|+|+|+|.|+.++++++. +||.++++.++++||+|+++|+|+ +++++.+ |++
T Consensus 86 ~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~~~ 162 (504)
T 2d4w_A 86 VWDKTTGKPVYNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEG---AREKAEKGDLLFGN 162 (504)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTT---HHHHHHHTCEEEEC
T ss_pred EEECCCCCCccccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChh---HHHHHhcCCeEEec
Confidence 46776 99999999999999999877653 469999999999999999999997 7788776 999
Q ss_pred hhhHHHHHHhCCCCCce---EEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc-CCCCCCCc
Q 046958 82 IDTWLIWSLTGGVNGDL---HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK-GCPITGIP 157 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~---~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-g~l~~g~p 157 (417)
++|||.|+|||+ .+ +++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.+++ ..+.+ +|
T Consensus 163 ~~d~l~~~LTG~---~~~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~~G~-~p 238 (504)
T 2d4w_A 163 TDTWVLWNMTGG---TEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPG-VP 238 (504)
T ss_dssp HHHHHHHHHTTT---TTTCCCEEEHHHHTTTTCEETTTTEECHHHHHHTTCCGGGSCEEECSEEEEEECCTTSSSTT-CE
T ss_pred HHHHHHHHhcCC---CcCCceeeehhhhhhhcCccCCCCccCHHHHHHhCCCHHHCCCccCCccceeccchHHhCCC-Ce
Confidence 999999999993 14 899999999999999999999999999999999999999999999999986 32335 99
Q ss_pred EEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC----------CCCchhhhh---
Q 046958 158 ISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP----------KAPTNYALE--- 223 (417)
Q Consensus 158 V~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~----------~~~~~~~l~--- 223 (417)
|++|++|++|+++|+++ ++|++++++|||+++.++++++|..++.+.+.+++|..++ ...++..++
T Consensus 239 V~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~ 318 (504)
T 2d4w_A 239 IAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLR 318 (504)
T ss_dssp EEEEEEHHHHHHHHTTCCSTTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSCCEEEEEEEESCSHHHHHHHH
T ss_pred EEEECCcHHHHHhhCCCCCCCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCCceEEEcchhhhHHHHHHHHH
Confidence 99999999999999999 9999999999999998877545666666776666665421 011112222
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 303 (417)
+.++...+|++++++++++++++|++|+|||.|+|+|+||+++||.|+||+..|+++||+||++||+||++|++++.|++
T Consensus 319 ~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 398 (504)
T 2d4w_A 319 DNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNA 398 (504)
T ss_dssp HTTCTTTTCSCTHHHHTTSSSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556788999888888889999999999999999999999999999999999999999999999999999999987
Q ss_pred hccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCC
Q 046958 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTS 383 (417)
Q Consensus 304 ~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~ 383 (417)
..|.+ +++|+++||++||++|+|++||++|+||+++...|++|+|||++|+.++|.++|++++. ++. +..
T Consensus 399 ~~g~~--------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~-~~~-~~~ 468 (504)
T 2d4w_A 399 DSGVD--------LTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVI-DNW-AED 468 (504)
T ss_dssp HHSCC--------CCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSSCSHHHHH-HHC-CEE
T ss_pred hcCCC--------cceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcchHHHHHHHHHhhcCccCCHHHHH-hhc-CCC
Confidence 66877 89999999999999999999999999999999999999999999999999999999985 442 567
Q ss_pred cEEeCCCCHHHHH-HHHHHHHHHHHHHhcccccc
Q 046958 384 TTFKPLLNEEFRK-KKAESQCRAVERTFNLADLS 416 (417)
Q Consensus 384 ~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~~ 416 (417)
++|+|++++ +.| ++|++|+++|++.++|.+++
T Consensus 469 ~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~~~~~ 501 (504)
T 2d4w_A 469 KRWSPSMES-GERERLYRNWKKAVTKTMEWVDED 501 (504)
T ss_dssp EEECCCSCH-HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEccCCCH-HHHHHHHHHHHHHHHHHhccchhh
Confidence 899999998 778 58999999999999987765
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-72 Score=578.71 Aligned_cols=380 Identities=40% Similarity=0.576 Sum_probs=332.7
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+|.+ |+|++|+|+|+|.|+.++++++. +||.++++.++++||+|+++|+|+ +++++.+ |++
T Consensus 86 ~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~~~ 162 (495)
T 2dpn_A 86 LWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPG---LKARAEGGGVAFGT 162 (495)
T ss_dssp EEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSS---HHHHHHHTCEEEEC
T ss_pred EEECCCCcCCccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHH---HHHHHhcCCcEEEC
Confidence 46766 99999999999999999877653 479999999999999999999997 7788766 999
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEec
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGC 161 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g 161 (417)
++|||.|+|||+ .++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|++++..+.+|+||++|
T Consensus 163 ~~d~l~~~LTG~---~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~G~g~pV~~g 239 (495)
T 2dpn_A 163 VDTWLIWNLTGG---KVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPIRGV 239 (495)
T ss_dssp HHHHHHHHHTTT---SCCEECHHHHTTSSSEETTTTEECHHHHHHTTCCSTTCCEECCTTSCCCBCCHHHHSSCCBEEEE
T ss_pred HHHHHHHHhcCC---CeEEEehHHhHhhcCccCccCCcCHHHHHHcCCCHHHCCCccCCCCeeEeccHHHcCCCCeEEEE
Confidence 999999999994 25899999999999999999999999999999999999999999999999974212279999999
Q ss_pred cchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC---------CCCchhhhh---hhcCC
Q 046958 162 LGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP---------KAPTNYALE---DSLGI 228 (417)
Q Consensus 162 ~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~~~~~l~---~~~~~ 228 (417)
++|++|+++|+++ ++|++++++|||+++.+.++++|..++.+.+..++|..+. ...++..++ + ++.
T Consensus 240 ~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~w~~~-~~~ 318 (495)
T 2dpn_A 240 LGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAVGWLKE-VGL 318 (495)
T ss_dssp EEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHH-TTS
T ss_pred CcHHHHHHHhCCCCCCCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEEEechHHhHHHHHHHHHH-cCC
Confidence 9999999999999 9999999999999998877545666656666556655421 011122222 4 665
Q ss_pred CCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 046958 229 ISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEK 308 (417)
Q Consensus 229 ~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~ 308 (417)
.++|++++++++++++++|++|+|||.|+|+|+||+++||.|+||+..|+++||+||++||+||+++++++.|++..|.+
T Consensus 319 ~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~~~g~~ 398 (495)
T 2dpn_A 319 IRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEAGVR 398 (495)
T ss_dssp SSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred ccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56788999999888888999999999999999999999999999999999999999999999999999999998756777
Q ss_pred ccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeC
Q 046958 309 GVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP 388 (417)
Q Consensus 309 ~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P 388 (417)
+++|+++||++||++|+|++||++|+||+++...|++|+|||++|+.++|.+ |++++. ++ ....++|+|
T Consensus 399 --------~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~-~~~~~~-~~-~~~~~~~~P 467 (495)
T 2dpn_A 399 --------LKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGAL-SPEDVA-GR-FREAERFLP 467 (495)
T ss_dssp --------CCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSC-CHHHHH-HH-CCEEEEECC
T ss_pred --------CcEEEEecccccCHHHHHHHHHHhCCeeEecCCcccHHHHHHHHHHhhcCcC-CHHHHH-Hh-cCCCeEEcc
Confidence 8899999999999999999999999999999999999999999999999999 999984 44 256789999
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHhccccc
Q 046958 389 LLNEEFRK-KKAESQCRAVERTFNLADL 415 (417)
Q Consensus 389 ~~~~~~~y-~~y~~~~~~~~~~~~~~~~ 415 (417)
+++. +.| ++|++|++++++.++|..+
T Consensus 468 ~~~~-~~y~~~~~~~~~~~~~~~~~~~~ 494 (495)
T 2dpn_A 468 TMPE-GRREALYRRWREAVERAKGWARE 494 (495)
T ss_dssp CSCH-HHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCH-HHHHHHHHHHHHHHHHHhhhhhc
Confidence 9998 777 5899999999999998654
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-71 Score=576.68 Aligned_cols=376 Identities=40% Similarity=0.552 Sum_probs=330.5
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh---------hhccccccccchHHHHhhhhcCCCcccccccceE----Eechh
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ---------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTTID 83 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~---------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~~~ 83 (417)
.+|.+|+|++|+|+|+|.|+.++++++. ++|.++++.++++||+|+++|+|+ +++++.+ |++++
T Consensus 87 ~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~~~~~ 163 (497)
T 2zf5_O 87 VWDKDGKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPG---LREKAEKGEVMFGTVD 163 (497)
T ss_dssp EECTTCCBSSCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTT---HHHHHHTTCCEEEEHH
T ss_pred EECCCCCCcccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHH---HHHHHhcCCCEEEcHH
Confidence 4677899999999999999999876552 479999999999999999999997 6777766 89999
Q ss_pred hHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEeccc
Q 046958 84 TWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLG 163 (417)
Q Consensus 84 dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g~~ 163 (417)
|||.|+||| ++++|+|+||+|++||+++++||+++|+.+||+.++||+|+++++++|++++..+.+|+||++|++
T Consensus 164 d~l~~~LTG-----~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~~~g~g~pV~~g~~ 238 (497)
T 2zf5_O 164 TFLIYRLTG-----EHVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAEIPVSGDAG 238 (497)
T ss_dssp HHHHHHHHS-----CCEEEHHHHTTSSSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCHHHHSSCCEEEEEEE
T ss_pred HHHHHHHhC-----CeeeeHHHhhhhcCccCCCCCcCHHHHHHcCcCHHHCCCcCCCCCeeeecCHHHcCCCCeEEEEcc
Confidence 999999999 999999999999999999999999999999999999999999999999997521227999999999
Q ss_pred hHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC---------CCCchhhhh---hhcCCCC
Q 046958 164 NQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP---------KAPTNYALE---DSLGIIS 230 (417)
Q Consensus 164 D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~~~~~l~---~~~~~~~ 230 (417)
|++|+++|+++ ++|++++++|||+++.+.++ +|..++.+.+..++|..+. ...++..++ +.++...
T Consensus 239 D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w~~~~~~~~~ 317 (497)
T 2zf5_O 239 DQQAALFGQAAFEAGMVKATYGTGSFILVNTD-KMVLYSDNLLTTIAWGLNGRVSYALEGSIFVTGAAVQWLRDGIKIIK 317 (497)
T ss_dssp HHHHHHHHTTCCSTTCEEEEESSSEEEEEEEE-TCCCCCTTSEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTSCCCS
T ss_pred HHHHHHHhCCCCCCCcEEEEcchhheeeEECC-CCccCCCCcEEEEEEEcCCCCEEEEechhhhHHHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999988775 4665555666556655421 011122222 4565556
Q ss_pred cHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 231 NASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 231 ~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
+|++++++++++|++++++|+|||.|+|+|+||+++||.|+||+..|+++|++||++||+||+++++++.|++. + +
T Consensus 318 ~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~l~~l~~~-~-~-- 393 (497)
T 2zf5_O 318 HASETEELATKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKL-V-Q-- 393 (497)
T ss_dssp CGGGHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT-S-C--
T ss_pred cHHHHHHHHhhCCCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-C-C--
Confidence 78899998888888899999999999999999999999999999999999999999999999999999999873 5 6
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLL 390 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~ 390 (417)
+++|+++||++||++|+|++||++|+||+++...|++|+|||++|+.++|.++|++++. ++ .+..++|+|++
T Consensus 394 ------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~g~~~~~~~~~-~~-~~~~~~~~P~~ 465 (497)
T 2zf5_O 394 ------IKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREIA-EL-WKAERIFEPKM 465 (497)
T ss_dssp ------CCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSSCCHHHHH-TT-CCEEEEECCCC
T ss_pred ------cceEEEeCccccCHHHHHHHHhhcCCeEEEcCCCcchHHHHHHHHHHHhCccCCHHHHH-Hh-cCCCeEECCCc
Confidence 89999999999999999999999999999999999999999999999999999999984 44 25678999999
Q ss_pred CHHHHH-HHHHHHHHHHHHHhcccc
Q 046958 391 NEEFRK-KKAESQCRAVERTFNLAD 414 (417)
Q Consensus 391 ~~~~~y-~~y~~~~~~~~~~~~~~~ 414 (417)
+. +.| ++|++|+++|+++++|..
T Consensus 466 ~~-~~y~~~y~~~~~~~~~~~~~~~ 489 (497)
T 2zf5_O 466 DE-KTRERLYKGWKEAVKRAMGWAK 489 (497)
T ss_dssp CH-HHHHHHHHHHHHHHHTTTTGGG
T ss_pred cH-HHHHHHHHHHHHHHHHHHhHhh
Confidence 98 777 589999999999998854
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-71 Score=572.81 Aligned_cols=373 Identities=20% Similarity=0.239 Sum_probs=318.0
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIW 88 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~ 88 (417)
.+|.+|+|++|+|+|+|.|+.++++++. +||.++++.++++||+|+++|+|+ +++++.+++.++|||.|
T Consensus 82 ~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~---~~~~~~~~l~~~d~l~~ 158 (484)
T 2itm_A 82 LLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPE---IFRQIDKVLLPKDYLRL 158 (484)
T ss_dssp EECTTCCBCSCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHH---HHTTCCEEECHHHHHHH
T ss_pred EECCCcCCCcccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChH---HHHHHhheeCcHHHHHH
Confidence 5677899999999999999999987763 479999999999999999999997 78999999999999999
Q ss_pred HHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEecc
Q 046958 89 SLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISGCL 162 (417)
Q Consensus 89 ~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~g~ 162 (417)
+||| ++++|+|+||+|++||+++++||+++|+.+||+.++||+|+++++++|++++ | |+ |+||++|+
T Consensus 159 ~LTG-----~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lp~i~~~~~~~G~~~~~~a~~~G-l~-g~pV~~g~ 231 (484)
T 2itm_A 159 RMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWG-MA-TVPVVAGG 231 (484)
T ss_dssp HHHS-----CCEEEHHHHHTTTCEETTTTEECHHHHHTTTCCGGGSCEEECTTSEEEECCHHHHHHHT-SC-CCEEECCE
T ss_pred HHhC-----CceeeHHHhhccccccCCCCCcCHHHHHHcCCCHHHCCCccCCcceeeccCHHHHHHhC-CC-CCeEEEEc
Confidence 9999 8999999999999999999999999999999999999999999999999974 6 88 99999999
Q ss_pred chHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh---hhcCCCCc
Q 046958 163 GNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE---DSLGIISN 231 (417)
Q Consensus 163 ~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~---~~~~~~~~ 231 (417)
||++|+++|+++ ++|++++++|||+++.+.++ .+..++.+....+++.+++ ...++..++ +.++. .+
T Consensus 232 ~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-~~ 309 (484)
T 2itm_A 232 GDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSE-GFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-SN 309 (484)
T ss_dssp EHHHHHHHHHTCCSTTCEEEEESSSEEEEEECS-SCCCCCSSSCEEEECSSTTCEEEEEEECCHHHHHHHHHHHTTC-CS
T ss_pred hHHHHHHHhCCCCCCCcEEEEccchheeEEecC-CCccCcccceEEeecccCCeeeeeehhhhHHHHHHHHHHhcCc-cc
Confidence 999999999999 99999999999998877664 4444333333334332210 011111222 44543 46
Q ss_pred HHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 232 ASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 232 ~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
|+++++++.+. +++++++|+|||.|||+|+||+++||.|+|++..|+++|++||++||+||++|++++.|++ .|.+
T Consensus 310 ~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~-~g~~-- 386 (484)
T 2itm_A 310 VPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIK-- 386 (484)
T ss_dssp HHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TTCC--
T ss_pred HHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--
Confidence 88888887776 5899999999999999999999999999999999999999999999999999999999987 5777
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCCh-hHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIES-TALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPL 389 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~-salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~ 389 (417)
+++|+++||++||++|+|++||++|+||++++..|. +|+|||++|+.++|.++|++++.+.+ ...++|+|+
T Consensus 387 ------~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~~~~~~~~~~~~--~~~~~~~P~ 458 (484)
T 2itm_A 387 ------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQL--PLEQSHLPD 458 (484)
T ss_dssp ------CSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCTTSCHHHHSCCC--CEEEEECCC
T ss_pred ------cceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCCcCCHHHHHHhc--CCCeEECCC
Confidence 899999999999999999999999999999998885 89999999999999999999986554 467889999
Q ss_pred CCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 390 LNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 390 ~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
+++++.| ++|++|++++++++++
T Consensus 459 ~~~~~~y~~~y~~~~~~~~~~~~~ 482 (484)
T 2itm_A 459 AQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888 5899999999998765
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=568.42 Aligned_cols=374 Identities=16% Similarity=0.202 Sum_probs=315.9
Q ss_pred cccCCccc---------ccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEe
Q 046958 18 LGFIFFPL---------GPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMT 80 (417)
Q Consensus 18 ~~~~g~pl---------~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~ 80 (417)
+|.+|+|| +|+|+|+|+|+.+++++++ ++|+++++.++++||+|+++|+|+ +++++.+|+
T Consensus 89 ~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe---~~~~~~~~~ 165 (554)
T 3l0q_A 89 LDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPN---TWSNVGHLF 165 (554)
T ss_dssp EETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHH---HHHHEEEEE
T ss_pred ECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChH---HHHHhceEE
Confidence 55566666 8999999999999987763 579999999999999999999997 789999999
Q ss_pred chhhHHHHHHhCCCCCceEEechhhhhhccc--ccCCCCCCCHHHHHhcCCCC------CCCC-CccccCccee-eec--
Q 046958 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTML--MNLKTLDWDKPTLETLGIPA------EIRP-KIVSNSEIIG-KIG-- 148 (417)
Q Consensus 81 ~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl--~d~~~~~W~~~ll~~~gi~~------~~LP-~i~~~~~~~G-~v~-- 148 (417)
+++|||.|+||| +. +.|+||.+++ ||+++++||+++|+.+||+. ++|| +|+++++++| +|+
T Consensus 166 ~~~dyl~~~LTG-----~~--~~s~as~t~~~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~i~~~~~~~G~~lt~~ 238 (554)
T 3l0q_A 166 DLPDFLTWRATK-----DE--TRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMGAPLGHGLSQR 238 (554)
T ss_dssp EHHHHHHHHHHS-----CC--CEEHHHHHHHSCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCSCEECTTCBCTTSSCHH
T ss_pred cHHHHHHHHHhC-----Cc--cccccchhhccccccccCCCCHHHHHHcCCccccchhHHhCCCcccCCcCeeCcccCHH
Confidence 999999999999 54 3566766654 78899999999999999986 2899 6999999999 887
Q ss_pred ----cCCCCCCCcEEeccchHHHhHhcC-cC--CCC-------ceEEeccCcceeeeecCcceeccCCCceeee-cee--
Q 046958 149 ----KGCPITGIPISGCLGNQHAAMLGQ-AC--KKG-------EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-AFK-- 211 (417)
Q Consensus 149 ----~g~l~~g~pV~~g~~D~~aa~lg~-g~--~~g-------~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-~~~-- 211 (417)
.| |++|+||++|++|++|+++|+ |+ ++| ++++++|||++++.+++ +|..++ +.+..+ ++.
T Consensus 239 ~A~~~G-L~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~~~~~~~~~~~~GTs~~~~~~~~-~~~~~~-~~~~~~~~~~~~ 315 (554)
T 3l0q_A 239 AASEMG-LIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSR-SAHFIS-GIWGPYYSAILP 315 (554)
T ss_dssp HHHHHT-CCTTCEEBCCEEHHHHHHHHHTTCCCTTSCCCCTTTEEEEECSSSEEEEEEES-SCCCCT-TSEEEEETSSST
T ss_pred HHHHhC-CCCCCeEEEeChHHHhHHhhccccccCCCccccccceEEEEecchheeeeecC-CccccC-CcceeecccccC
Confidence 37 999999999999999999986 55 577 78899999999887775 455543 444322 111
Q ss_pred ----c-CCCCCchhhhh---hhcCC------------CCcHHHHHHHHHhc-CC-------CCCeEEccccCCCCCCCCC
Q 046958 212 ----L-GPKAPTNYALE---DSLGI------------ISNASEIEELALRV-NS-------TGGIYFVRAFNGLLAPWWR 263 (417)
Q Consensus 212 ----~-g~~~~~~~~l~---~~~~~------------~~~~~~l~~~a~~~-~~-------~~gl~flP~l~Ger~P~~~ 263 (417)
. +....++..++ +.++. .+.|+.|++++++. ++ ++|++|+|||.|||+|+||
T Consensus 316 ~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~flP~~~Ger~P~~d 395 (554)
T 3l0q_A 316 EYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSPRAN 395 (554)
T ss_dssp TCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEECCTTCBCSSSCB
T ss_pred CceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccccCceEEcccccCCCCCCCC
Confidence 1 10011222222 23321 24588888777765 33 6899999999999999999
Q ss_pred CCCceEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh
Q 046958 264 DDARSVCIGITRFTSKAHF---ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL 340 (417)
Q Consensus 264 ~~~rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~ 340 (417)
|++||+|+||+..|+++|| +||++|||||++|++++.|++ .|.+ +++|+++||++||++|+||+|||+
T Consensus 396 ~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~-~g~~--------~~~i~~~GG~aks~~~~Qi~ADv~ 466 (554)
T 3l0q_A 396 PNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQ-NGYN--------IDTMMASGGGTKNPIFVQEHANAT 466 (554)
T ss_dssp TTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCC--------CCEEEEESGGGGCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------CCEEEEeCccccCHHHHHHHHHhh
Confidence 9999999999999999999 899999999999999999988 5877 899999999999999999999999
Q ss_pred CCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeC-CCCHHHHH-HHHHHHHHHHHHHhcccc
Q 046958 341 GSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKP-LLNEEFRK-KKAESQCRAVERTFNLAD 414 (417)
Q Consensus 341 g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P-~~~~~~~y-~~y~~~~~~~~~~~~~~~ 414 (417)
|+||++++..|++|+|||++|++++|.++|++++++++. +..++|+| ++++++.| ++|++|+++|+.++++..
T Consensus 467 g~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~~~y~~y~~l~~~~~~~~~ 541 (554)
T 3l0q_A 467 GCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMS-RIGKTVTPQTNKIKAYYDRKYRVFHQMYHDHMRYQA 541 (554)
T ss_dssp CCEEEEESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhc-CCCcEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877874 67889999 99999999 589999999999988754
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=559.65 Aligned_cols=366 Identities=14% Similarity=0.115 Sum_probs=315.3
Q ss_pred CcccccccccCCcccHHHHHhhh-----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHHHH
Q 046958 22 FFPLGPSEHWAGFRLVVENRTVQ-----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIWSL 90 (417)
Q Consensus 22 g~pl~p~i~W~D~R~~~~~~~~~-----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~~L 90 (417)
++||+|+|+|+|+|+.++++++. +||+++++.++++||+|+++|+|+ +++++.+|++++|||.|+|
T Consensus 130 ~~pl~~ai~W~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe---~~~~~~~~~~~~d~l~~~L 206 (538)
T 4bc3_A 130 CFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPE---AYSHTERISLVSSFAASLF 206 (538)
T ss_dssp CBSCSEEECTTCCCCHHHHHHHHHHHTSHHHHHHHHSSCCCTTSHHHHHHHHHHHCHH---HHHTEEEEEEHHHHHHHHH
T ss_pred cccccCCcccccCcHHHHHHHHHHhhCcHHHHHHHHCCCCccccHHHHHHHHHHcCHH---HHHHhheEEcHHHHHHHHH
Confidence 35999999999999999876552 579999999999999999999996 8999999999999999999
Q ss_pred hCCCCCceEE-echhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCcceeeecc------CCCCCCCcEEecc
Q 046958 91 TGGVNGDLHV-TDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSEIIGKIGK------GCPITGIPISGCL 162 (417)
Q Consensus 91 TG~~~~~~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~g~ 162 (417)
|| +.+ +|+|+||+|+|||+++++||+++|+.+|++ .++||+|+++++++|+|++ | |++|+||++|+
T Consensus 207 TG-----~~~~td~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~~LP~i~~~~~~~G~l~~~~a~~~G-l~~g~pV~~g~ 280 (538)
T 4bc3_A 207 LG-----SYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYG-FPPGCKVVAFT 280 (538)
T ss_dssp HT-----SCCCCBHHHHTTSSCEETTTTEECHHHHHHHCTTHHHHHCCCBCSSCEEEECCHHHHHHHC-CCTTCEEECCE
T ss_pred hC-----CCcccccchhhcccccccccCCCCHHHHHHhCccHHHHCCCcccccccccccCHHHHHHhC-CCCCCeEEEec
Confidence 99 776 999999999999999999999999999998 7899999999999999985 7 99999999999
Q ss_pred chHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceec--------CCCCCchhhhh---hhcCCCCc
Q 046958 163 GNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKL--------GPKAPTNYALE---DSLGIISN 231 (417)
Q Consensus 163 ~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~--------g~~~~~~~~l~---~~~~~~~~ 231 (417)
+|++|+++|++.++|++++++|||+++.++++ +|..++.+. .+++.. +....+...++ +.++ ..+
T Consensus 281 ~D~~aa~~g~~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~-~~~ 356 (538)
T 4bc3_A 281 GDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQ-EPMPALEGH--IFCNPVDSQHYMALLCFKNGSLMREKIRNESV-SRS 356 (538)
T ss_dssp EHHHHHHHHTTCCTTCEEEEESSSEEEEEEES-SCCCCSSSE--EEEETTEEEEEEEEEEESSSHHHHHHHHHHHS-TTC
T ss_pred ccHHhhhhccccCCCcEEEEeccchheEEecC-CCCCCCCcc--eEEeecCCCCEEEeehhhccchHHHHHHHHhc-CCC
Confidence 99999999993399999999999999988875 455555442 233321 10112222222 4454 357
Q ss_pred HHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEE------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 232 ASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCI------GITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 232 ~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~------Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
|++|++++++++ +++|++|+|||.|||+|+ +||.|+ |++. |+++||+||++|||||++|++++.|++
T Consensus 357 ~~~l~~~a~~~~~g~~gl~~lp~~~Ger~P~----~~G~~~~~~~~~g~~~-~~~~~l~RAvlEgia~~~r~~~~~l~~- 430 (538)
T 4bc3_A 357 WSDFSKALQSTEMGNGGNLGFYFDVMEITPE----IIGRHRFNTENHKVAA-FPGDVEVRALIEGQFMAKRIHAEGLGY- 430 (538)
T ss_dssp HHHHHHHHHTSCTTGGGCEEEEESSCCSSSC----CCEEEEECTTSCEESC-CCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCCCCCCCeEEeecCCCCcCCC----CCceeeeccccccccC-CCHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999885 889999999999999997 456665 2443 899999999999999999999999876
Q ss_pred ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCC--CCCHHHHHhccccCC
Q 046958 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGV--FKEEEIFASSERTKT 382 (417)
Q Consensus 305 ~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~--~~~~~~~~~~~~~~~ 382 (417)
.+.+ +++|+++||++||++|+||+|||+|+||+++...|++|+|||++|++++|. ++|++++++.+. +.
T Consensus 431 ~g~~--------~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~ea~~~~~-~~ 501 (538)
T 4bc3_A 431 RVMS--------KTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAP-NP 501 (538)
T ss_dssp CCCT--------TCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTTHHHHHHHHHHHHHHHTGGGSCHHHHHTTSC-CC
T ss_pred cCCC--------CCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCCchHHHHHHHHHHHhCcccCCCHHHHHHhhc-CC
Confidence 5666 899999999999999999999999999999999999999999999999998 899999988773 67
Q ss_pred CcEEeCCCCHHHHH-HHHHHHHHHHHHHhccccc
Q 046958 383 STTFKPLLNEEFRK-KKAESQCRAVERTFNLADL 415 (417)
Q Consensus 383 ~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~ 415 (417)
.++|+|++++++.| ++|++|+++|+++....++
T Consensus 502 ~~~~~P~~~~~~~Y~~~y~~y~~l~~~~~~~~~~ 535 (538)
T 4bc3_A 502 RLAATPSPGASQVYEALLPQYAKLEQRILSQTRG 535 (538)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CeeECCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999 5899999999998876554
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-67 Score=544.55 Aligned_cols=364 Identities=18% Similarity=0.191 Sum_probs=310.3
Q ss_pred ccccCCcccccccccCCcccHHHHHhh--------------------------hhhccccccccchHHHHhhhhcCCCcc
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV--------------------------QWRSNKMVPVQRIPELTRSRQQTASSE 70 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~--------------------------~~~G~~~~~~~~~~kl~wl~~~~p~~~ 70 (417)
.+|.+|+|++|+|+|+|+|+.++++++ ++||+++++.++++||+|+++|+|+
T Consensus 79 ~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe-- 156 (515)
T 3i8b_A 79 ILDNQGNVIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPE-- 156 (515)
T ss_dssp EECTTSCBCSCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHCHH--
T ss_pred EECCCCCCcCCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHHHHHHHHcChH--
Confidence 567889999999999999999875543 2468899999999999999999997
Q ss_pred cccccceEEechhhHHHHHHhCCC--------CCceEEechhhhhhcccccCCCCCCCHHHHHhc-CCC-----------
Q 046958 71 GETLDRTLMTTIDTWLIWSLTGGV--------NGDLHVTDVSNASRTMLMNLKTLDWDKPTLETL-GIP----------- 130 (417)
Q Consensus 71 ~~~~~~~~~~~~~dyi~~~LTG~~--------~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~-gi~----------- 130 (417)
+++++.+|++++|||.|+|||.. ++..+++|+|+||+|+|||+++++||+++|+.+ ||+
T Consensus 157 -~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~~gi~~~~~~~~~~~~ 235 (515)
T 3i8b_A 157 -NVKKIAAICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEAAEGAKAAQSHAE 235 (515)
T ss_dssp -HHTTCSEEECHHHHHHHHHTTCCCCCTTSCCCGGGCEEEHHHHTTSSSEETTTTEECHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHheecCHHHHHHHHhcCCCcccccccccccceeecHHHhhcccCeeCCcCccCHHHHHhhcCCCcccccccccch
Confidence 78999999999999999999920 000168999999999999999999999999998 998
Q ss_pred CCCCCCccccCcceeeeccCC-----CCCCCcEEeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCce
Q 046958 131 AEIRPKIVSNSEIIGKIGKGC-----PITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLL 205 (417)
Q Consensus 131 ~~~LP~i~~~~~~~G~v~~g~-----l~~g~pV~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~ 205 (417)
.++||+|+++++++|.|++.+ |++|+||++|++|++|+++|+|.++|++++++|||+++..+++ +|..++.+.+
T Consensus 236 ~~~LP~i~~~~~~~G~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~ 314 (515)
T 3i8b_A 236 AIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLGMAVGDVSISLGTSGVAAAISE-NPTYDLTGAV 314 (515)
T ss_dssp HSBCCEEECTTCCCSSCCCTTTTTTTSTTCCEECCCEEHHHHHHHHTTCCTTEEEEEESSSEEEEECBS-SCCCCTTSCS
T ss_pred HHHCCCCcCCcCcccCcCHHHHHHhCCCCCCeEEEECchHHHHHhhCCCCCCcEEEEechhhhhhcccC-ccccCCCCcE
Confidence 789999999999999998521 8899999999999999999998888999999999999987664 5666666665
Q ss_pred eeeceecC------CCCCchhhhh---hhcCCCCcHHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCC
Q 046958 206 STLAFKLG------PKAPTNYALE---DSLGIISNASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITR 275 (417)
Q Consensus 206 ~~~~~~~g------~~~~~~~~l~---~~~~~~~~~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~ 275 (417)
.++++..| ....+++.++ +.++. +|++++++++++ |+++|++|+|||.|||+|+| +++||.|+||+.
T Consensus 315 ~~~~~~~g~~~~~~~~~~gg~~l~w~~~~~~~--~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~-~~arg~~~Gl~~ 391 (515)
T 3i8b_A 315 SGFADCTGHYLPLACTINGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-PNATATFSGMTL 391 (515)
T ss_dssp EEEECSSSSEEEEEEESCSTHHHHHHHHHHTC--CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTTB-TTCCCEEESCCT
T ss_pred EeeecCCCCEEEeeecccHHHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCCC-cCcceEEecCCC
Confidence 55543311 1122344443 45664 699999999988 58899999999999999977 999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhH
Q 046958 276 FT-SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTA 354 (417)
Q Consensus 276 ~~-~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sa 354 (417)
.| +++||+||++|||||++|++++.|++ .|.+ +++|+++||++||++|+||+|||+|+||+++...|++|
T Consensus 392 ~~~~~~~l~RAvlEgia~~~r~~l~~l~~-~g~~--------~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~a 462 (515)
T 3i8b_A 392 ANTTRENLARAFVEGLLCSQRDCLELIRS-LGAS--------ITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVA 462 (515)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCC--------CCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------CCEEEEECchhcCHHHHHHHHHHhCCceEecCCcccHH
Confidence 99 99999999999999999999999998 6877 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHHHHHHH
Q 046958 355 LGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAES 401 (417)
Q Consensus 355 lGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~y~~ 401 (417)
+|||++|++++|.++++++ +......+|+|+++. +..++|++
T Consensus 463 lGAA~lA~~a~G~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~ 504 (515)
T 3i8b_A 463 IGAARQAAWVLSGETEPPA----WQLTIDGVETGEPTE-AVYEAYAK 504 (515)
T ss_dssp HHHHHHHHHHHHCCSSCCC----CCCCEEEEECCCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCChhH----hhhhccccCCCCccH-HHHHHHHH
Confidence 9999999999999877653 322457788999873 44444443
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-62 Score=506.35 Aligned_cols=365 Identities=18% Similarity=0.183 Sum_probs=290.5
Q ss_pred ccccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+|++|+|+|+|.|+.++++++ +++|+++++.++++||+|+++|+|+ +++++.+++.++|||
T Consensus 88 ~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~l~~~dyl 164 (489)
T 2uyt_A 88 LLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPE---LIPHIAHALLMPDYF 164 (489)
T ss_dssp EECTTSCEESCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHCGG---GGGGCCEEEEHHHHH
T ss_pred EECCCCCCccCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcCch---HHHHhhhccCcHHHH
Confidence 357789999999999999999887655 2579999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEe-ccchH
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISG-CLGNQ 165 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~-g~~D~ 165 (417)
.|+||| ++++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|+++.. ..+|+||++ |++|+
T Consensus 165 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~i~~~~~~~G~~~~~-~~~g~pV~~~g~~D~ 238 (489)
T 2uyt_A 165 SYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDT 238 (489)
T ss_dssp HHHHHS-----CCCCBHHHHGGGTCEETTTTEECHHHHHHHTCCGGGSCCCBCTTCEEEEEECT-TCCEEEEECCCCBHH
T ss_pred HHHHhC-----CccceehhhhhhcccccCcCccCHHHHHHcCCCHHHCCCccCCCcceeeeecc-cCCCCcEEEECchHH
Confidence 999999 89999999999999999999999999999999999999999999999998643 347899997 88999
Q ss_pred HHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCcee--eec------eecCCCCCchhhhhhhcC--CCCcHHH
Q 046958 166 HAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLS--TLA------FKLGPKAPTNYALEDSLG--IISNASE 234 (417)
Q Consensus 166 ~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~--~~~------~~~g~~~~~~~~l~~~~~--~~~~~~~ 234 (417)
+|+++|+|+ ++|++++++|||+++.+.++ .+..++.+... .++ |.......+.|..++.+. ..+.|++
T Consensus 239 ~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~ 317 (489)
T 2uyt_A 239 ASAVIASPLNGSRAAYLSSGTWSLMGFESQ-TPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPA 317 (489)
T ss_dssp HHHHHHSCCCSTTEEEEEESSSEEEEEEES-SCCCSHHHHHHTCEEECCGGGCEEEEEEECTTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCCCCCCcEEEEEchHhhcccccC-CCccCHHHHhhcceeecCCCCeEEEehhHhHHHHHHHhhcccchhhHHH
Confidence 999999999 99999999999999877664 33322111110 000 100000113454432111 1346777
Q ss_pred HHHHHHhcCCCCCeEEccccCCCCCCCCCCC-----CceEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 235 IEELALRVNSTGGIYFVRAFNGLLAPWWRDD-----ARSVCIGI--TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 235 l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~-----~rg~~~Gl--~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
+.+.++..|+.+ ++|+| ++.|+++|+ .||.|.|+ +..|+++||+||++|||||++|++++.|++..|.
T Consensus 318 l~~~a~~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~ 392 (489)
T 2uyt_A 318 LIAATQALPACR-FIINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLRGE 392 (489)
T ss_dssp HHHHHTTSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhccCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 776664446655 45788 477788887 57889888 4789999999999999999999999999876677
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCC---HHHHHhccccCCCc
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKE---EEIFASSERTKTST 384 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~---~~~~~~~~~~~~~~ 384 (417)
+ +++|+++||++||++|+||+|||+|+||+++. .|++++|||++|+.+.+...+ ++++++.+. . .+
T Consensus 393 ~--------~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~e~~alGaa~~A~~a~~~~~~~~~~~~~~~~~~-~-~~ 461 (489)
T 2uyt_A 393 D--------FSQLHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTLDELNNVDDFRQVVSTTA-N-LT 461 (489)
T ss_dssp C--------CSEEEEESGGGGCHHHHHHHHHHHTSEEEECC-TTHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHS-C-CE
T ss_pred C--------CCEEEEeCChhhhHHHHHHHHHHHCCeeecCC-ccHhHHHHHHHHHHHcCccccHHHHHHHHHhhC-C-Ce
Confidence 7 89999999999999999999999999999876 799999998888887765544 445555552 3 58
Q ss_pred EEeCCCCHH-HHH-HHHHHHHHHHH
Q 046958 385 TFKPLLNEE-FRK-KKAESQCRAVE 407 (417)
Q Consensus 385 ~~~P~~~~~-~~y-~~y~~~~~~~~ 407 (417)
+|+|+++++ +.| ++|++|+++.+
T Consensus 462 ~~~P~~~~~~~~Y~~~~~~y~~~~~ 486 (489)
T 2uyt_A 462 TFTPNPDSEIAHYVALIHSTRQTKE 486 (489)
T ss_dssp EECCCTTSHHHHHHHHTTC------
T ss_pred EECCCcchHHHHHHHHHHHhhchhh
Confidence 999999998 888 46777776643
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-59 Score=483.09 Aligned_cols=313 Identities=15% Similarity=0.121 Sum_probs=257.8
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh-------hhccccccc--cchHHHHhhhhcCCCcccccccceEEechhhHHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ-------WRSNKMVPV--QRIPELTRSRQQTASSEGETLDRTLMTTIDTWLI 87 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~-------~~G~~~~~~--~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~ 87 (417)
.+| +|+||+|+|+|+|+|+.+++++++ +||+++++. ++++||+|+++|+|+ +++++. |++++|||.
T Consensus 83 ~~D-~G~pl~~ai~w~D~R~~~~~~~l~~~~~~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~-~l~~~dyl~ 157 (482)
T 3h6e_A 83 ALT-DGRLAFPPLDYEQSIPEAVMADYRSQRDPFARTGSPALPDGLNIGSQLWWLDQLHPD---VMANAT-LLPWAQYWA 157 (482)
T ss_dssp EEE-TTEECSCCBCTTSCCCHHHHHHHHTTCCCHHHHCCCCCSTTSSHHHHHHHHHHHSHH---HHHSCE-EEEHHHHHH
T ss_pred EEC-CCCEeccccccCCcccHHHHHHHHhhChHHHHhCCCCCCCchhHHHHHHHHHHcCch---hhhcCE-EEccHHHHH
Confidence 478 999999999999999999987663 579999987 899999999999997 789998 999999999
Q ss_pred HHHhCCCCCceEEechhh-hhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 88 WSLTGGVNGDLHVTDVSN-ASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 88 ~~LTG~~~~~~~~~d~s~-As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
|+||| +.++|+|+ ||+|+|||+++++|+ ++|+.+||+ ++||+|+++++++|+|++ | |++|+||++
T Consensus 158 ~~LTG-----~~~td~s~~As~t~l~d~~~~~W~-~ll~~~gi~-~~LP~v~~~~~~~G~l~~~~A~~~G-L~~g~pV~~ 229 (482)
T 3h6e_A 158 WFLTG-----RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRLGWA-ARFAPIVRAGDTVGALLPAIAERTG-LSPDVQVLA 229 (482)
T ss_dssp HHTTS-----CCCEEHHHHTTTCSSEETTTTEEC-HHHHHTTCG-GGBCCEECTTSEEEECCHHHHHHHT-CCTTCEEEC
T ss_pred HHHhC-----CeeeecchhhhccCCccCCcCcHH-HHHHHcCCH-HhCCCCcCCCceeeeeCHHHHHHhC-CCCCCEEEE
Confidence 99999 89999998 899999999999999 599999999 999999999999999974 7 999999999
Q ss_pred ccchHHHhHhc---CcC-CCCc-eEEeccCcceeeeecCc---c-eecc-CCCceeee---ceecCC-CCCchhhhh---
Q 046958 161 CLGNQHAAMLG---QAC-KKGE-AKSTYGTGAFIRLNTGE---E-VVKS-KHGLLSTL---AFKLGP-KAPTNYALE--- 223 (417)
Q Consensus 161 g~~D~~aa~lg---~g~-~~g~-~~~s~GTs~~~~~~~~~---~-~~~~-~~g~~~~~---~~~~g~-~~~~~~~l~--- 223 (417)
|++|++|+++| +|+ ++|+ +++++|||.+++. +.+ + |..+ ..+++.++ +|..+. ...++..++
T Consensus 230 g~~D~~aa~lG~~g~g~~~~g~~~~~s~GT~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w~~ 308 (482)
T 3h6e_A 230 GLHDSNAALLAARGFAEIADNEATVLSTGTWFIAMR-LPATPVDTATLPEARDCLVNVDVHGRPVPSARFMGGREIETLI 308 (482)
T ss_dssp CEEHHHHHHHHHTTSTTTTTSSEEEEECSSSEEEEE-ECSSCCCGGGCCGGGTEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred eCcHHHHHHhhhhccCCcCCCCEEEEECCceeEEEE-ecCccCCccccchhhceeeccccccccccchhhhhHHHHHHHH
Confidence 99999999999 999 9987 5899999987643 333 2 3222 23333221 121110 001122222
Q ss_pred hhcCCC----CcHHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHH--HHHHHHH
Q 046958 224 DSLGII----SNASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLES--MCFLVKD 296 (417)
Q Consensus 224 ~~~~~~----~~~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEg--ia~~~~~ 296 (417)
+..+.. .++.++ ++... ++++|++|+|||.|||+|+||+ ||+|+||+. +|++||++|+ |||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~--~a~~~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~l~RA~lE~~Gia~~~r~ 380 (482)
T 3h6e_A 309 EIDTRRVDIKPDQPAL--LAAVPEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DWFERRAAACLYAALVADT 380 (482)
T ss_dssp CSGGGCTTCGGGHHHH--HHTHHHHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccccchhhH--HHhccccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HHHHHHHHHHHhHHHHHHH
Confidence 111211 223333 22222 4789999999999999999987 999999998 7999999995 9999999
Q ss_pred HHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHh-hCCcEEccCCCChhHHHHHHHHHHh
Q 046958 297 VLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADL-LGSPVLRPADIESTALGAAFAAGLA 364 (417)
Q Consensus 297 ~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv-~g~pv~~~~~~e~salGaAllA~~~ 364 (417)
+++.|++ .++|+++||++||++|+||+||| +|+||++++..|++++|||++|+.+
T Consensus 381 ~l~~~~~-------------~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 381 ALDLIGS-------------TGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPG 436 (482)
T ss_dssp HHHHTTC-------------CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHHHHCTT
T ss_pred HHHHhcC-------------CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHHHhCcc
Confidence 9998864 36899999999999999999999 9999999999999999999999887
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-12 Score=123.10 Aligned_cols=116 Identities=20% Similarity=0.144 Sum_probs=92.3
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGIT-RFTSKAHFARAVLESMCFLVKDVLDSKQ 302 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~-~~~~~~~l~rAvlEgia~~~~~~~~~l~ 302 (417)
+.|+. +++++++++.+.+ .|+..|+|++.+ +++.++++. ..++++|++|+++|+|++++..+ ++
T Consensus 140 ~~lg~--~~~el~~la~~~~-------~p~~~~~~c~vf---a~s~v~~l~~~g~~~~di~~av~e~Va~~i~~~---~~ 204 (270)
T 1hux_A 140 NILEV--KVSDLAELGAKST-------KRVAISSTCTVF---AESEVISQLSKGTDKIDIIAGIHRSVASRVIGL---AN 204 (270)
T ss_dssp HHHTC--CTTTHHHHHTTCC-------SCCCCCCCSHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHhCC--CHHHHHHHHhhCC-------CCCCcccccchh---HhHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH---Hh
Confidence 45664 5778888876532 567778888743 677777765 68899999999999999998544 33
Q ss_pred hhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCC-hhHHHHHHHHHHh
Q 046958 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-STALGAAFAAGLA 364 (417)
Q Consensus 303 ~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e-~salGaAllA~~~ 364 (417)
. .+. .++|+++||+++|+.|+|+++|++++||.+++..+ .+|+|||++|+..
T Consensus 205 ~-~~~---------~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 205 R-VGI---------VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp T-TCC---------CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred c-CCC---------CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 3 222 36799999999999999999999999999988777 6999999999765
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=75.19 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTA 354 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~sa 354 (417)
...++++++++++.++-.+....... . . +++|+++||.++|+.+++.+++.+|+++.+++. .+.+|
T Consensus 179 ~~~~~di~a~~~~~v~~~l~~~~~~~----~-~--------~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A 245 (276)
T 4ehu_A 179 NAKIEDIVAGIHTSVAKRVSSLVKRI----G-V--------QRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGA 245 (276)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH----C-C--------CSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhc----c-c--------CCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHH
Confidence 46789999999999987765543322 1 2 678999999999999999999999999999874 56889
Q ss_pred HHHHHHHHHhc
Q 046958 355 LGAAFAAGLAI 365 (417)
Q Consensus 355 lGaAllA~~~~ 365 (417)
+|||++|....
T Consensus 246 ~GAAl~A~~~~ 256 (276)
T 4ehu_A 246 LGAALYAFDEA 256 (276)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999996553
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=71.31 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 230 SNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIG-----ITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 230 ~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~G-----l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
.+++++.+++.+-...+-=+.+-.++|...+....+..++.+| +....+++|++++++.+|+.++..+.....+
T Consensus 155 ~~~~el~~lA~~g~~~~vDl~v~DIy~~~~~~l~~~s~as~Fgk~~~l~~~g~~~eDIaasl~~sV~~~I~~la~~~a~- 233 (287)
T 2ews_A 155 TDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAR- 233 (287)
T ss_dssp CCHHHHHHHHTTCCCTTTCEETTTC-------CCTTSEEETTTTGGGCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCccccccchhhhcCCCCCCcCcchhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4899999998643211111122222221111111233333333 2345789999999999999888776544332
Q ss_pred ccccccccCCCCCceEEEecC-ccccHHHHHHHHHh---hCCcEEccCCCC-hhHHHHHHHH
Q 046958 305 AVEKGVIKDAKPEFVLRVDGG-ATVNNLLMQIQADL---LGSPVLRPADIE-STALGAAFAA 361 (417)
Q Consensus 305 ~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~q~~Adv---~g~pv~~~~~~e-~salGaAllA 361 (417)
..+ +++|+++|| .+.|+.+++.+.+. .+.++.+++..+ .+|+|||+.|
T Consensus 234 -~~~--------i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 234 -EFK--------TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp -HTT--------CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred -hCC--------CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 233 678999999 79999999999998 488899887654 8999999864
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=71.74 Aligned_cols=121 Identities=18% Similarity=0.076 Sum_probs=82.4
Q ss_pred CcHHHHHHHHHhcCC-CCCeEEccccCCCCCC--CCCCCCceEEEcCC------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046958 230 SNASEIEELALRVNS-TGGIYFVRAFNGLLAP--WWRDDARSVCIGIT------RFTSKAHFARAVLESMCFLVKDVLDS 300 (417)
Q Consensus 230 ~~~~~l~~~a~~~~~-~~gl~flP~l~Ger~P--~~~~~~rg~~~Gl~------~~~~~~~l~rAvlEgia~~~~~~~~~ 300 (417)
.+|+++.++|.+-.. .-. +.+-.+.|..-+ ....+..++-+|-. ...+++|++++++..|+.++.++.-.
T Consensus 221 ~~~dEl~~lA~~Gd~~~vD-llV~DIYg~~y~~~gL~~~~~ASsFGk~~~~~~~~~~~~eDIa~gll~sVa~~I~~lA~l 299 (360)
T 2i7n_A 221 ETFEEALEMAAKGDSTNVD-KLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARM 299 (360)
T ss_dssp CSHHHHHHHHHHCCGGGTS-EEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCccc-ceeeecccCcccccCCCccceeehhhhHhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999876321 111 222333332111 11234444545533 25689999999999999998877533
Q ss_pred HHhhccccccccCCCCCceEEEecC-ccccHHHHHHHHHhhC------CcEEccCCC-ChhHHHHHHHH
Q 046958 301 KQKDAVEKGVIKDAKPEFVLRVDGG-ATVNNLLMQIQADLLG------SPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 301 l~~~~g~~~~~~~~~~~~~i~~~GG-~a~s~~~~q~~Adv~g------~pv~~~~~~-e~salGaAllA 361 (417)
..+..+ +++|+++|| .++|+..+++++..++ +++.+++.. -.+|+|||+.+
T Consensus 300 ~A~~~~----------i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 300 CALNEN----------IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHHHHT----------CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred HHHHcC----------CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 322223 668999999 8999999999999985 678877654 49999999976
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00039 Score=73.13 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEcc-CCCChhHHHH
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRP-ADIESTALGA 357 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~-~~~e~salGa 357 (417)
..++++.+++.+...++..++...- ...+ ++.|+++||+++.|.+.+++.+.||+++... +..++.|+||
T Consensus 305 ~e~l~~~~~~~i~~~v~~~L~~a~~-~~~~--------i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GA 375 (605)
T 4b9q_A 305 LESLVEDLVNRSIEPLKVALQDAGL-SVSD--------IDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGA 375 (605)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTTC-CGGG--------CSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CHHH--------CcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhH
Confidence 3455666677666666666554321 1223 8899999999999999999999999998774 4678999999
Q ss_pred HHHHHHhcCCCC
Q 046958 358 AFAAGLAIGVFK 369 (417)
Q Consensus 358 AllA~~~~G~~~ 369 (417)
|+.|+.-.|..+
T Consensus 376 ai~a~~l~~~~~ 387 (605)
T 4b9q_A 376 AVQGGVLTGDVK 387 (605)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHHHHHhcCCCC
Confidence 999998776543
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00079 Score=66.77 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEEcc-CCCChhHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVLRP-ADIESTALGA 357 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~~~-~~~e~salGa 357 (417)
.++++.+++.+.-.++..++.... .... ++.|+++||+++.|.+.+++.+.| +.+|... +..++.|+||
T Consensus 324 ~~~~~~~~~~i~~~i~~~l~~~~~-~~~~--------i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Ga 394 (404)
T 3i33_A 324 EELNADLFRGTLEPVEKALRDAKL-DKGQ--------IQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGA 394 (404)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHHTC-CGGG--------CCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CHhh--------CCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHH
Confidence 344555566666555555554321 1223 789999999999999999999999 8888775 5678999999
Q ss_pred HHHHHHhcC
Q 046958 358 AFAAGLAIG 366 (417)
Q Consensus 358 AllA~~~~G 366 (417)
|+.|+.-.|
T Consensus 395 a~~a~~l~~ 403 (404)
T 3i33_A 395 AVQAAILIG 403 (404)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999986544
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00018 Score=67.42 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHH
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALG 356 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salG 356 (417)
...++++.+++.++..++..++. .+ . ++.|+++||+++++.+.+++++.|+.||.++. ..+++|+|
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~~----~~-~--------~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~G 267 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIKN----YD-Q--------TLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLG 267 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT----SC-S--------SCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cC-C--------CCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHH
Confidence 34566777777776655554432 22 2 67899999999999999999999999999865 45799999
Q ss_pred HHHHH
Q 046958 357 AAFAA 361 (417)
Q Consensus 357 aAllA 361 (417)
||+.|
T Consensus 268 aal~a 272 (272)
T 3h1q_A 268 IALFG 272 (272)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 99853
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00093 Score=66.46 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc---------cCCCC
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR---------PADIE 351 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~---------~~~~e 351 (417)
++++.+++.+.-.++..++...- .... ++.|+++||+++.|.+.+++.+.|+.++.+ .+..+
T Consensus 318 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~--------i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ 388 (409)
T 4gni_A 318 TIARTVFEGFNRLVESAVKKAGL-DPLD--------VDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSE 388 (409)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTTC-CGGG--------CCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CHHH--------CCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHH
Confidence 34455555555555555443221 1223 789999999999999999999999987433 45678
Q ss_pred hhHHHHHHHHHHh
Q 046958 352 STALGAAFAAGLA 364 (417)
Q Consensus 352 ~salGaAllA~~~ 364 (417)
+.|+|||+.|+.-
T Consensus 389 ava~GAa~~~~~~ 401 (409)
T 4gni_A 389 LQARGAALQASLI 401 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999999998754
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0021 Score=63.15 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=41.5
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAAG 362 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA~ 362 (417)
++.|+++||+++.|.+.+.+.+.|+.++.... ..++.|+|||+.|+
T Consensus 334 i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~ 380 (383)
T 1dkg_D 334 IDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG 380 (383)
T ss_dssp CCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTT
T ss_pred CCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHH
Confidence 78999999999999999999999999887654 57799999999875
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0042 Score=63.75 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEcc-CCCChhHHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRP-ADIESTALGAAF 359 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~-~~~e~salGaAl 359 (417)
.+++.+++.+.-.++..++... ..... ++.|+++||+++.|.+.+.+.+.|+.++... +..++.|+|||+
T Consensus 276 ~l~~~~~~~i~~~i~~~L~~a~-~~~~~--------i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~ 346 (509)
T 2v7y_A 276 ELSAHLVERTMGPVRQALQDAG-LTPAD--------IDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAI 346 (509)
T ss_dssp HHTHHHHHTTHHHHHHHHHHHT-CCGGG--------CSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CChhH--------CcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHH
Confidence 3445555555555555554432 11123 7899999999999999999999999887654 467899999999
Q ss_pred HHHHhcC
Q 046958 360 AAGLAIG 366 (417)
Q Consensus 360 lA~~~~G 366 (417)
.|+.-.|
T Consensus 347 ~a~~l~~ 353 (509)
T 2v7y_A 347 QGGVIAG 353 (509)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9987555
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=56.51 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~ 349 (417)
..++++.+++.+.++-.+...+....+..+ +++|+++||.++|..+++.+.+.+ |.+|.+++ .
T Consensus 220 ~~~~diAasfq~~l~~~l~~~~~~a~~~~g----------~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~ 289 (334)
T 3eno_A 220 QAIEDISYSIQETAFAMLVEVLERALYVSG----------KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCM 289 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCC
Confidence 468999999999999988888777655444 679999999999999999999988 78888764 3
Q ss_pred CChhHHHHHHHHHHhcCCCCCH
Q 046958 350 IESTALGAAFAAGLAIGVFKEE 371 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~~~~~ 371 (417)
..+.++|.|.+.....|...++
T Consensus 290 D~G~~iG~a~~~~~~~g~~~~~ 311 (334)
T 3eno_A 290 DNGIMIAQAALLMYKSGVRMSV 311 (334)
T ss_dssp CCTHHHHHHHHHHHHTTCCCCG
T ss_pred hHHHHHHHHHHHHHHcCCCCCc
Confidence 5688899998777766765544
|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.019 Score=56.03 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEEccCC-----
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVLRPAD----- 349 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~~~~----- 349 (417)
..+++|+.+-+.|-.|.++.+.++.+. .. +++|+++|||++|+.+|+.++..+. .+|...+.
T Consensus 255 ~ls~~Dv~ATLt~~TA~sIa~~~~~~~----~~--------~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~ 322 (371)
T 3qbx_A 255 ALPAADIQATLLELSARSISESLLDAQ----PD--------CEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPP 322 (371)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHC----TT--------CCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCCh
Confidence 357999999999999998888877653 23 6799999999999999999999984 77776542
Q ss_pred CChhHHHHHHHHHHhc-CCCCCHHHHHhccccCCCcEEeCCCCHH
Q 046958 350 IESTALGAAFAAGLAI-GVFKEEEIFASSERTKTSTTFKPLLNEE 393 (417)
Q Consensus 350 ~e~salGaAllA~~~~-G~~~~~~~~~~~~~~~~~~~~~P~~~~~ 393 (417)
.---|+.-|.+|...+ |.-.++...-..-.....-.+.|-..++
T Consensus 323 d~~EA~aFA~LA~~~l~g~p~~lp~vTGA~~~~~lG~i~p~~~~~ 367 (371)
T 3qbx_A 323 AWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAGSHH 367 (371)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCSCHHHHCCSSCCCCCEEECC----
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcccCCCCCccCceeccCCCcc
Confidence 1233566677776654 4444554442211123566778876543
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.015 Score=56.28 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~ 349 (417)
.+++++.+++.+.++-.+....+.+.+..+ .++|.++||.++|..+++.+.+.+ |.+|.+++ .
T Consensus 215 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~~----------~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~ 284 (330)
T 2ivn_A 215 YRVEDLAYSFQETAFAALVEVTERAVAHTE----------KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCR 284 (330)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCC
Confidence 468999999999999998888877765444 679999999999999999999887 77888765 2
Q ss_pred CChhHHHHHHHHHHhcCCCCCH
Q 046958 350 IESTALGAAFAAGLAIGVFKEE 371 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~~~~~ 371 (417)
..+.++|+|.......|...++
T Consensus 285 D~G~~iG~a~~~~~~~~~~~~~ 306 (330)
T 2ivn_A 285 DNGAMIAYTGLRMYKAGISFRL 306 (330)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCG
T ss_pred hhHHHHHHHHHHHHhcCCCCCc
Confidence 4577899988766555554443
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0053 Score=65.23 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=58.2
Q ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChh
Q 046958 278 SKAHF---ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIEST 353 (417)
Q Consensus 278 ~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~s 353 (417)
++.+| +..+++.+.-.++..++...- ...+ ++.|+++||+++.|.+.+++.+.||+++.. .+..++.
T Consensus 302 tr~~fe~l~~~l~~~i~~~i~~~L~~a~l-~~~~--------I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaV 372 (675)
T 3d2f_A 302 SREELEELVKPLLERVTEPVTKALAQAKL-SAEE--------VDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAI 372 (675)
T ss_dssp EHHHHHHHTHHHHTTTTHHHHHHHHHHTC-CGGG--------CCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Chhh--------CcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHH
Confidence 45444 444555554445544443320 1123 899999999999999999999999998876 4567899
Q ss_pred HHHHHHHHHHhcCC
Q 046958 354 ALGAAFAAGLAIGV 367 (417)
Q Consensus 354 alGaAllA~~~~G~ 367 (417)
|+|||+.|+.-.|.
T Consensus 373 A~GAa~~a~~ls~~ 386 (675)
T 3d2f_A 373 AKGAAFICAIHSPT 386 (675)
T ss_dssp HHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999876654
|
| >3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.024 Score=60.77 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~ 349 (417)
.+++++.+++.++++-.+......+.+..| +++|.++||.++|..+++.+.+.+ |.++..+. .
T Consensus 664 ~~~~dIAasFq~ala~~L~~~~~~a~~~~g----------~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~ 733 (761)
T 3vth_A 664 FEKSYISAKFHNTVVNFTYDLANLIRKETG----------INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCN 733 (761)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCC
Confidence 467888888888888888877776655445 679999999999999999998887 78888754 3
Q ss_pred CChhHHHHHHHHHHhcC
Q 046958 350 IESTALGAAFAAGLAIG 366 (417)
Q Consensus 350 ~e~salGaAllA~~~~G 366 (417)
..+.++|.|++|+...+
T Consensus 734 DgGialGQA~~a~~~~~ 750 (761)
T 3vth_A 734 DGGISLGQAVIANKILE 750 (761)
T ss_dssp GGGHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhc
Confidence 45678999999875543
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0047 Score=59.77 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=40.7
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCcEEcc-CCCChhHHHHHHHHH
Q 046958 318 FVLRVDGGATVNNLLMQIQADLLGSPVLRP-ADIESTALGAAFAAG 362 (417)
Q Consensus 318 ~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~-~~~e~salGaAllA~ 362 (417)
+.|+++||+++.|.+.+.+.+.|+.+|.+. +..++.++|||++|.
T Consensus 279 ~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~ 324 (344)
T 1jce_A 279 RGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLD 324 (344)
T ss_dssp HCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGG
T ss_pred CcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHh
Confidence 579999999999999999999999999886 457799999999875
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.014 Score=60.54 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=43.8
Q ss_pred CceEEEecCccccHHHHHHHHHhhC-CcEEcc-CCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLG-SPVLRP-ADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~~-~~~e~salGaAllA~~~~G 366 (417)
++.|+++||+++.|.+.+.+.+.|+ +++... +..++.|+|||+.|+.-.|
T Consensus 331 i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~ 382 (554)
T 1yuw_A 331 IHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSG 382 (554)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTS
T ss_pred CcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcC
Confidence 8999999999999999999999996 777654 5678999999999987655
|
| >3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.036 Score=58.23 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEEccC----CC
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVLRPA----DI 350 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~~~~----~~ 350 (417)
..+++++.+++.++++-.+......+.+..| +++|.++||.++|..+++.+.+.+ |.+|..+. ..
T Consensus 569 g~~~~dIAasFh~ala~~L~~~~~ra~~~~g----------~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~D 638 (657)
T 3ttc_A 569 QAPVNQRAWAFHDALAQGFAALMREQATMRG----------ITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGD 638 (657)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCc
Confidence 4578999999999999998888877665444 679999999999999999999998 88887643 35
Q ss_pred ChhHHHHHHHHHH
Q 046958 351 ESTALGAAFAAGL 363 (417)
Q Consensus 351 e~salGaAllA~~ 363 (417)
.+.++|-|++|+.
T Consensus 639 nGiaLGQA~~a~~ 651 (657)
T 3ttc_A 639 GGLSLGQGVIAAA 651 (657)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788999998863
|
| >4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.023 Score=61.06 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~ 349 (417)
.+++++.+++-+.++-.+.+.+..+.+.+| ++.|.++||.+.|..+++.+.+.+ |..|.++. .
T Consensus 676 ~~~~dIAasfQ~al~~~L~~~~~~a~~~tg----------~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~n 745 (772)
T 4g9i_A 676 ASPADIAYSAHLALARAFAHTAVERAREFG----------VKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRG 745 (772)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCC
Confidence 467888888888888888777777665455 679999999999999999998876 56676643 3
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 046958 350 IESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~~ 368 (417)
..+.|+|.|++|+..+.-+
T Consensus 746 DgGiALGQA~iA~~~L~~~ 764 (772)
T 4g9i_A 746 DNGVNVGQAFLGGLYLEGY 764 (772)
T ss_dssp GGGHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHhcc
Confidence 4577999999998876544
|
| >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.041 Score=53.72 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEEccCC-----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVLRPAD-----I 350 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~~~~~-----~ 350 (417)
.+++|+.+-+.|-.|.++.+.++.+. . ..+|+++|||++|+.+|+.++..+ +.+|...+. .
T Consensus 263 l~~~Dv~ATLt~~TA~sIa~~~~~~~-----~--------~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d 329 (370)
T 3cqy_A 263 LNEEDIQSTLLDLTCHSIAQDILKLA-----Q--------EGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPK 329 (370)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHC-----S--------SEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC-----C--------CCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChh
Confidence 36899999999999998888876651 3 579999999999999999999999 556665331 1
Q ss_pred ChhHHHHHHHHHHhc-CCCCCHHHH
Q 046958 351 ESTALGAAFAAGLAI-GVFKEEEIF 374 (417)
Q Consensus 351 e~salGaAllA~~~~-G~~~~~~~~ 374 (417)
.--|+.-|.+|...+ |.-.++...
T Consensus 330 ~~EA~aFA~LA~~~l~g~p~nlp~v 354 (370)
T 3cqy_A 330 WAEGIAFAWLAMRYQLGLPANLPAV 354 (370)
T ss_dssp THHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCcc
Confidence 223455566666553 444444443
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.016 Score=60.69 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=44.0
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G 366 (417)
++.|+++||+++.|.+.+++.+.||+++.. .+..++.|+|||+.|+.-.|
T Consensus 334 i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~ 384 (605)
T 2kho_A 334 IDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTG 384 (605)
T ss_dssp CSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTT
T ss_pred CceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcC
Confidence 899999999999999999999999988765 45678999999999976555
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.064 Score=55.48 Aligned_cols=80 Identities=21% Similarity=0.152 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC-cEEccC--CCChhH
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPA--DIESTA 354 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~--~~e~sa 354 (417)
..+++.++.-+.++-.+.+....+.+.+| +++|.++||.+.|..+++.+.+..+. .+.++. ...+.+
T Consensus 279 ~~~dIAasfQ~~l~~~L~~~~~~a~~~tg----------~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~a 348 (576)
T 3ven_A 279 EYRDLAATAQAALERAVFGLADSVLARTG----------ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVS 348 (576)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHH
Confidence 37899999888888888887777665455 67999999999999999998887765 666643 456788
Q ss_pred HHHHHHHHHhcCC
Q 046958 355 LGAAFAAGLAIGV 367 (417)
Q Consensus 355 lGaAllA~~~~G~ 367 (417)
+|+|+.+....|.
T Consensus 349 iGqA~~a~~~~g~ 361 (576)
T 3ven_A 349 LGAAAAVAVELGD 361 (576)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999998766553
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.062 Score=52.38 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDA-VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA 348 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~ 348 (417)
...++++..++.++-.++..++.+.... ... ++.|+++||+++.+.+.+++++.|+.||.+.+
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~--------~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~ 338 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEFFRIQLEEAS--------PEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN 338 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------CSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--------cCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence 3566778888999888888887653211 224 78999999999999999999999999999863
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.089 Score=50.24 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=36.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCC---cEEccC-CCChhHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGS---PVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~---pv~~~~-~~e~salGaAllA 361 (417)
++.|+++||+|+- +.+.+.+.++. ++.++. ..++.|+|+++++
T Consensus 273 ~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 7899999999974 88999999998 577655 4669999999865
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.065 Score=53.49 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKD-----AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA 348 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~-----~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~ 348 (417)
..++++..+|-+.-.++..++...-. .... +..|+++||+|+-+.+.+++++.||+||++..
T Consensus 294 l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~--------~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 294 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGI--------PGGVVLTGGGAKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----------------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--------CCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence 45667788888887777777765310 0122 67899999999999999999999999998755
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.62 Score=47.82 Aligned_cols=85 Identities=9% Similarity=0.045 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC---C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD---I 350 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~---~ 350 (417)
.+++++.+++.+.++-.+....+...+..| +++|.++||.+.|..+++.+...+ |.++.+++. .
T Consensus 219 ~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~----------~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~~~~~~ 288 (540)
T 3en9_A 219 ERLEDICYSLQEYAFSMLTEITERALAHTN----------KGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCG 288 (540)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCCCcCCC
Confidence 468899999988888888777766554455 679999999999999999998876 678888652 3
Q ss_pred -ChhHHHHHHHHHHhcCCCCCH
Q 046958 351 -ESTALGAAFAAGLAIGVFKEE 371 (417)
Q Consensus 351 -e~salGaAllA~~~~G~~~~~ 371 (417)
.++.+|.+-.-....|...++
T Consensus 289 Dngamia~~~~~~~~~g~~s~l 310 (540)
T 3en9_A 289 DNGAMIAWLGLLMHKNGRWMSL 310 (540)
T ss_dssp SCHHHHHHHHHHHHHTCCCCCG
T ss_pred CCHHHHHHHHHHHHHcCCCCcc
Confidence 344455443333334444333
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=1.4 Score=41.16 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEEccCCCChhHHHHHHH
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVLRPADIESTALGAAFA 360 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~~~~~~e~salGaAll 360 (417)
..+.+++-.+..+...+..+.... + ++.|++.||.++++.+.+.+...+ ..+|..+...+++++|||.+
T Consensus 215 ~a~~il~~~~~~La~~i~~l~~~l--~--------p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~GAa~l 284 (299)
T 2e2o_A 215 VAMDILKQGAELLASQAVYLARKI--G--------TNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDLGKRSPEIGAVIL 284 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T--------CSEEEEESGGGGSHHHHHHHHHHHHHTTCEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--C--------CCEEEEECCccCcHHHHHHHHHHCCCCeEeccCCCCChHHHHHHH
Confidence 345566666666666665554432 3 678999999987766666555544 34777765446789999999
Q ss_pred HHHh
Q 046958 361 AGLA 364 (417)
Q Consensus 361 A~~~ 364 (417)
+...
T Consensus 285 a~~~ 288 (299)
T 2e2o_A 285 AYKE 288 (299)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=85.77 E-value=2.2 Score=40.66 Aligned_cols=72 Identities=15% Similarity=0.008 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAA 358 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaA 358 (417)
.+.++.+++-++-.+...+... +.++ ..++.|+++||+|.- +.+.+.+.++.++.+++.+ .+.|+|+.
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~~----~~~~-----~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~~~P~~a~a~G~~ 319 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEKR----GFKL-----DQLDSLIFIGGTTQK--LKEQISKTYPNNSIITNNSQWTTCEGLY 319 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----TCCT-----TSCSEEEEESTTHHH--HHHHHHHHSTTCEECCSSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCH-----HHccEEEEECChHHH--HHHHHHHHcCCCCEecCCChhhHHHHHH
Confidence 4555666665555554444433 2221 115789999999974 6689999999889987754 58899988
Q ss_pred HHHH
Q 046958 359 FAAG 362 (417)
Q Consensus 359 llA~ 362 (417)
.++.
T Consensus 320 ~~~~ 323 (329)
T 4apw_A 320 KVAV 323 (329)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=1.1 Score=43.10 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHH-HHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEE---ccCCCChhHH
Q 046958 281 HFA-RAVLESMCFLVKDVLDS-KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVL---RPADIESTAL 355 (417)
Q Consensus 281 ~l~-rAvlEgia~~~~~~~~~-l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~---~~~~~e~sal 355 (417)
+.+ +.+++-++-.+...++. |++ .... ++.|+++||+|+- +.+++.+.|+.... ..+..++.|+
T Consensus 268 ~~i~~~~i~~~~~~i~~~i~~~l~~-~~~~--------i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~ 336 (346)
T 2fsj_A 268 PEVSGPILEDLANRIIENIRLNLRG-EVDR--------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANAL 336 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG-GGGG--------EEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhc--------ccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHH
Confidence 444 55666666666555544 443 2223 7889999999985 78888999985433 3234578999
Q ss_pred HHHHHHH
Q 046958 356 GAAFAAG 362 (417)
Q Consensus 356 GaAllA~ 362 (417)
|+..++.
T Consensus 337 G~~~~~~ 343 (346)
T 2fsj_A 337 GYRDAAE 343 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=83.65 E-value=5 Score=37.44 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC------CcEEccC-CCChhHH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG------SPVLRPA-DIESTAL 355 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g------~pv~~~~-~~e~sal 355 (417)
.+.+++-.+..+...+..+... .+ ++.|++.||.++.+.+.+.+-+.+. .+|+... ..+++++
T Consensus 214 a~~~~~~~~~~La~~i~~l~~~--~~--------p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 214 SERLITEFYTGICTGLYNLIYL--FD--------PTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHH
Confidence 4555666666666555555432 23 6789999999886656555444442 2455544 3568999
Q ss_pred HHHHHHHHhc
Q 046958 356 GAAFAAGLAI 365 (417)
Q Consensus 356 GaAllA~~~~ 365 (417)
|||.++....
T Consensus 284 GAa~l~~~~~ 293 (297)
T 4htl_A 284 GAVYHFLQEE 293 (297)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 9999887543
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=81.87 E-value=5.1 Score=38.02 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc--------eEEEecCcccc-HHHHHHH----HHhh-------C
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF--------VLRVDGGATVN-NLLMQIQ----ADLL-------G 341 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~--------~i~~~GG~a~s-~~~~q~~----Adv~-------g 341 (417)
.++.+++-.+..+...+..+... .+ ++ .|++.||.+++ +.+.+.+ .+.. .
T Consensus 233 ~a~~il~~~~~~La~~i~~l~~~--~~--------p~~~~~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (347)
T 2ch5_A 233 LSRYIFRKAGEMLGRHIVAVLPE--ID--------PVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFF 302 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG--SC--------GGGGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hc--------ccccccCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccC
Confidence 34556666666666666665542 23 45 78888888764 5444333 2221 2
Q ss_pred CcEEccCCCChhHHHHHHHHHHhcC
Q 046958 342 SPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 342 ~pv~~~~~~e~salGaAllA~~~~G 366 (417)
.+|++....+++++|||.++....+
T Consensus 303 ~~i~~~~~~~a~~~GAa~la~~~~~ 327 (347)
T 2ch5_A 303 SSFTLMKLRHSSALGGASLGARHIG 327 (347)
T ss_dssp SEEEEEEESSCTHHHHHHHHHHTTT
T ss_pred CceEEEecCCChHHHHHHHHHHhcC
Confidence 3566555455899999999977654
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=81.86 E-value=4.9 Score=37.92 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc-HHHHHHHHHhh----------CCcEEccCC-C
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLL----------GSPVLRPAD-I 350 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~----------g~pv~~~~~-~ 350 (417)
.+.+++-.+..+...+..+... .+ ++.|++.||.++. +.+.+.+-+.+ ..+|+.... .
T Consensus 237 a~~~~~~~~~~La~~i~~l~~~--ld--------P~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~ 306 (321)
T 3r8e_A 237 ALAVWADIGTIIGESLVNIVRV--MD--------LNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLEN 306 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCC
Confidence 3455666666666666555543 23 6789999999875 55554443322 234555543 4
Q ss_pred ChhHHHHHHHHHH
Q 046958 351 ESTALGAAFAAGL 363 (417)
Q Consensus 351 e~salGaAllA~~ 363 (417)
+++++|||.++..
T Consensus 307 ~a~~~GAa~l~~~ 319 (321)
T 3r8e_A 307 DAGLLGAAGLIME 319 (321)
T ss_dssp GHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHh
Confidence 6889999998863
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=80.32 E-value=7.5 Score=35.85 Aligned_cols=71 Identities=14% Similarity=0.031 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh------------CCcEEccC-C
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL------------GSPVLRPA-D 349 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~------------g~pv~~~~-~ 349 (417)
.+.+++-.+..+...+..+.... + ++.|++.||.+.++.+.+.+...+ ..+|+... .
T Consensus 204 a~~i~~~~~~~L~~~i~~l~~~l--~--------p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 273 (292)
T 2gup_A 204 CQEAIERMNRNLAQGLLNIQYLI--D--------PGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYH 273 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--C--------CSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--C--------CCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccC
Confidence 34455555555555555554322 3 578989898877666554333222 24566554 3
Q ss_pred CChhHHHHHHHHHH
Q 046958 350 IESTALGAAFAAGL 363 (417)
Q Consensus 350 ~e~salGaAllA~~ 363 (417)
.++.++|||.++..
T Consensus 274 ~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 274 ADANLYGALVNWLQ 287 (292)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHH
Confidence 56789999998864
|
| >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=80.15 E-value=4.6 Score=37.26 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-------CcEEccC-CCChhH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-------SPVLRPA-DIESTA 354 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-------~pv~~~~-~~e~sa 354 (417)
.+.+++-.+..+...+..+.... + ++.|++.||.+.++.+.+.+...+. .+|+... ..++++
T Consensus 210 a~~i~~~~~~~L~~~i~~l~~~l--~--------p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~ 279 (289)
T 2aa4_A 210 AQQLIHRSARTLARLIADIKATT--D--------CQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGL 279 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--C--------CSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--C--------CCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHH
Confidence 34455555555555555554322 3 5778888888866666655544433 2455544 356889
Q ss_pred HHHHHHHH
Q 046958 355 LGAAFAAG 362 (417)
Q Consensus 355 lGaAllA~ 362 (417)
+|||.++.
T Consensus 280 ~GAa~l~~ 287 (289)
T 2aa4_A 280 LGAALLAQ 287 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 417 | ||||
| d2p3ra2 | 247 | c.55.1.4 (A:254-500) Glycerol kinase {Escherichia | 4e-49 | |
| d1r59o2 | 235 | c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus | 2e-42 | |
| d2p3ra1 | 252 | c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co | 1e-23 | |
| d1r59o1 | 252 | c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c | 8e-23 |
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 147 bits (371), Expect = 2e-42
Identities = 93/244 (38%), Positives = 133/244 (54%), Gaps = 22/244 (9%)
Query: 175 KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPK------------APTNYAL 222
+KG K+TYGTGAFI +NTGEE S + LL+T+ + + K L
Sbjct: 2 EKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWL 61
Query: 223 EDSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHF 282
D L +I + + EELA + +Y V AF GL AP+W +AR G+TR T+K F
Sbjct: 62 RDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDF 121
Query: 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS 342
RA L+++ + KDV+D+ +KD+ +L+VDGGA N+LLMQ QAD+L
Sbjct: 122 VRATLQAVAYQSKDVIDTMKKDS--------GIDIPLLKVDGGAAKNDLLMQFQADILDI 173
Query: 343 PVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQ 402
V R A++E+TALGAA+ AGLA+G +K+ + + F P + E R E
Sbjct: 174 DVQRAANLETTALGAAYLAGLAVGFWKDLDELK--SMAEEGQMFTPEMPAEERDNLYEGW 231
Query: 403 CRAV 406
+AV
Sbjct: 232 KQAV 235
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 94.4 bits (234), Expect = 8e-23
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 158 LFGTIDSWLVWKLTDG---QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 214
Query: 138 VSNSEIIGKIGKGCPI-TGIPISGCLGNQHAAMLGQ 172
SNSE+ G + +PI+G G+Q AA+ GQ
Sbjct: 215 KSNSEVYGHTRSYHFYGSEVPIAGMAGDQQAALFGQ 250
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 100.0 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 99.95 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 99.95 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 97.51 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 97.49 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.41 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 97.3 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 96.99 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 95.85 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 95.78 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 91.8 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 90.58 | |
| d2ap1a1 | 186 | Putative regulator protein YcfX {Salmonella typhim | 89.14 | |
| d1z05a2 | 197 | Transcriptional regulator VC2007 {Vibrio cholerae | 88.01 | |
| d2ch5a1 | 227 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 87.98 | |
| d2gupa2 | 175 | Hypothetical protein SP2142 {Streptococcus pneumon | 87.91 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 86.46 | |
| d1ig8a2 | 262 | Hexokinase {Baker's yeast (Saccharomyces cerevisia | 85.28 | |
| d1xc3a2 | 176 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 85.19 | |
| d1v4sa2 | 243 | Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | 83.1 | |
| d1woqa2 | 124 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 82.92 | |
| d1z6ra3 | 196 | Mlc protein {Escherichia coli [TaxId: 562]} | 82.48 | |
| d1czan2 | 243 | Mammalian type I hexokinase {Human (Homo sapiens) | 80.1 |
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=100.00 E-value=8.1e-45 Score=338.29 Aligned_cols=219 Identities=43% Similarity=0.664 Sum_probs=184.3
Q ss_pred CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh--------------hhcCCCCcHHHHHHHHH
Q 046958 175 KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240 (417)
Q Consensus 175 ~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~--------------~~~~~~~~~~~l~~~a~ 240 (417)
++|++.++.|||+++++++++.|..++.+++.+++|..+. ...|.++ +.++.....+..+.++.
T Consensus 2 ~~G~~k~T~GTg~~v~~~tg~~~~~~~~gll~t~~~~~~~--~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~ 79 (235)
T d1r59o2 2 EKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGING--KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 79 (235)
T ss_dssp STTCBCCEESSSEECEEECTTSCCCCSSSCEEEECCCSSS--CCCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGTTTTS
T ss_pred CCCCeEeccccceEEEEecCCccccCCCCcEEEEEEEeCC--ccEEEeHHHHHHHHHHHHHHHhhhhcccchhhhccccc
Confidence 5899999999999998888777777888888888876532 2223322 33433333333333333
Q ss_pred hcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceE
Q 046958 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320 (417)
Q Consensus 241 ~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 320 (417)
..+++++++|+|||.|+|+|+||+++||.|+||+.+|++.||+||++|||||++|++++.|++..|.+ +++|
T Consensus 80 ~~~~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~--------~~~i 151 (235)
T d1r59o2 80 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGID--------IPLL 151 (235)
T ss_dssp SSSSCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CSEE
T ss_pred ccCCCCcceeeehhhhccccccCCCcceeEeecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcEE
Confidence 34689999999999999999999999999999999999999999999999999999999999767877 8999
Q ss_pred EEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHHHHHH
Q 046958 321 RVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAE 400 (417)
Q Consensus 321 ~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~y~ 400 (417)
+++||+++|+.|+|++|||+|+||++++..|++++|||++|+.++|.++|++++ +++ .+..++|+|+.+.+++.++|+
T Consensus 152 ~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e~~alGaA~la~~~~G~~~~~~~~-~~~-~~~~~~~~P~~~~~~~~~~Y~ 229 (235)
T d1r59o2 152 KVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSM-AEEGQMFTPEMPAEERDNLYE 229 (235)
T ss_dssp EEEESTTSCHHHHHHHHHHHSSEEEEESCCCTTTHHHHHHHHHHHTSSSSSTTS-GGG-CCEEEEECCCSTTSSHHHHHT
T ss_pred EecCcchhCHHHHhhhhhccceeeeeccccchHHHHHHHHHHHHcCCCCCHHHH-Hhc-cCCCcEEcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999886 555 367899999988766557899
Q ss_pred HHHHH
Q 046958 401 SQCRA 405 (417)
Q Consensus 401 ~~~~~ 405 (417)
+|+++
T Consensus 230 ~wkkA 234 (235)
T d1r59o2 230 GWKQA 234 (235)
T ss_dssp TTTTT
T ss_pred HHHhh
Confidence 99864
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=99.95 E-value=2.6e-29 Score=235.52 Aligned_cols=152 Identities=30% Similarity=0.467 Sum_probs=130.9
Q ss_pred ccc-cCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceE----Eec
Q 046958 17 NLG-FIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTL----MTT 81 (417)
Q Consensus 17 ~~~-~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~----~~~ 81 (417)
.+| .+|+||+|+|+|+|+|+.++.+++. ++|.++++.++++|++|+++|.|+ .++++.+ +..
T Consensus 85 ~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~~~ 161 (252)
T d1r59o1 85 VWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEG---AQEKADNGELLFGT 161 (252)
T ss_dssp CBCSSSCCCSSCCBCTTCCSSCHHHHHHHHHTCHHHHTTTTCCCSSTTSHHHHSHHHHSSSSS---SSTTTTTTCCBCCC
T ss_pred EEECCCCCCcccccccCccchHHHHHHHHhcCCHHHHHHHHCCCCCccchHHHHHHHHHhhhH---HHHHHHhccccccc
Confidence 345 3589999999999999999877653 679999999999999999999998 5666654 778
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCC-CCCCCcEEe
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGC-PITGIPISG 160 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~-l~~g~pV~~ 160 (417)
+++||.|+|||+ ...++|+|+|++|++||+++++|++++++.+|++.++||+|+++++++|++++.. ++.|+||++
T Consensus 162 ~~~~l~~~Ltg~---~~~~~d~s~as~t~~~d~~~~~w~~~l~~~~gi~~~~LP~l~~~g~~~G~v~~~~~l~~g~pV~~ 238 (252)
T d1r59o1 162 IDSWLVWKLTDG---QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIAG 238 (252)
T ss_dssp HHHHHHHTSSSS---CCCEECHHHHTTSSSBCTTTSSBCHHHHTTTTCCSSSSCEECCSSSCCBCCSS-------SCEEE
T ss_pred hHHHHHHHhcCC---CcccccccchhhccccCcccccchHHHHHHhCCCHHHCCCcccCCCceEEeChhhcCCCCCeEEE
Confidence 999999999974 2568999999999999999999999999999999999999999999999998643 889999999
Q ss_pred ccchHHHhHhcCcC
Q 046958 161 CLGNQHAAMLGQAC 174 (417)
Q Consensus 161 g~~D~~aa~lg~g~ 174 (417)
|+||++||++|+.+
T Consensus 239 g~gD~~aa~iG~~a 252 (252)
T d1r59o1 239 MAGDQQAALFGQMA 252 (252)
T ss_dssp ECCTTTSHHHHTTC
T ss_pred EhHHHHHHHHhCcC
Confidence 99999999999753
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00028 Score=61.95 Aligned_cols=121 Identities=18% Similarity=0.031 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHhcCCCCCeEEccccCCCCCCC--CCCCCceEEEcCC------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046958 229 ISNASEIEELALRVNSTGGIYFVRAFNGLLAPW--WRDDARSVCIGIT------RFTSKAHFARAVLESMCFLVKDVLDS 300 (417)
Q Consensus 229 ~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~--~~~~~rg~~~Gl~------~~~~~~~l~rAvlEgia~~~~~~~~~ 300 (417)
..++++++++|++-....--+-+|...|....+ -..+...+.+|-. ...+++|+++++++.++..+-+....
T Consensus 72 ~~~~~eI~klA~~G~~~~~dl~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~DiaaS~q~~v~~~l~~~a~~ 151 (212)
T d2i7na2 72 CETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARM 151 (212)
T ss_dssp CCSHHHHHHHHHHCCGGGTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCccccCccCCCcCCCCCCcccCCHHHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998632111113345554432211 2233444444421 24578999999999999998887766
Q ss_pred HHhhccccccccCCCCCceEEEecCccccHHHHH-HHHHh---h---CCcEEccCC-CChhHHHHHH
Q 046958 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQ-IQADL---L---GSPVLRPAD-IESTALGAAF 359 (417)
Q Consensus 301 l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q-~~Adv---~---g~pv~~~~~-~e~salGaAl 359 (417)
..+..+ +++|+++||.+.|..+++ +++.+ + +..+..++. .-++|+||+|
T Consensus 152 aa~~~~----------~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l 208 (212)
T d2i7na2 152 CALNEN----------IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALL 208 (212)
T ss_dssp HHHHHT----------CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHH
T ss_pred HHHHcC----------CCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHH
Confidence 655444 789999999988766655 44433 3 667777775 4589999776
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=97.49 E-value=0.00011 Score=63.74 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChh
Q 046958 276 FTSKAHFARAVLESMCFLVKDVL-DSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIEST 353 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~s 353 (417)
.-++.+|-. +++-+.-.+..++ +.|++ ++.+ ...++.|.++||+++.|.+.+.+.+.|+.++.. .+..++.
T Consensus 114 ~itr~~~~~-~~~~~~~~~~~~i~~~l~~-a~~~-----~~~Id~v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aV 186 (198)
T d1dkgd2 114 KVTRAKLES-LVEDLVNRSIELLKVALQD-AGLS-----VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAV 186 (198)
T ss_dssp EEEHHHHHH-HSHHHHHHHHHHHHHHHHT-TTCC-----TTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHH
T ss_pred EEcHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCC-----hhHCcEEEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHH
Confidence 346777754 4444545544444 33433 3432 234899999999999999999999999988766 4456799
Q ss_pred HHHHHHHHHH
Q 046958 354 ALGAAFAAGL 363 (417)
Q Consensus 354 alGaAllA~~ 363 (417)
|.|||+.|+.
T Consensus 187 a~GAa~~aa~ 196 (198)
T d1dkgd2 187 AIGAAVQGGV 196 (198)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.41 E-value=0.00014 Score=64.71 Aligned_cols=76 Identities=20% Similarity=0.072 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTA 354 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~sa 354 (417)
....++++...++.+...+... +... .+ ++.|++.||.++|+.+.+.+.+.++.++.+++. .++++
T Consensus 180 ~~~~~~i~~~~~~~~~~~~~~~---~~~~--~~--------~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~aga 246 (259)
T d1huxa_ 180 GTDKIDIIAGIHRSVASRVIGL---ANRV--GI--------VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGA 246 (259)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH---HHTT--CC--------CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH---HHhc--cC--------CCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHH
Confidence 3456777777776665555443 3321 23 578999999999999999999999999999874 56889
Q ss_pred HHHHHHHHHh
Q 046958 355 LGAAFAAGLA 364 (417)
Q Consensus 355 lGaAllA~~~ 364 (417)
+|||++|..-
T Consensus 247 iGAA~lA~~~ 256 (259)
T d1huxa_ 247 LGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.00024 Score=61.22 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=41.2
Q ss_pred CceEEEecCccccHHHHHHHHHhhC-CcEEcc-CCCChhHHHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLG-SPVLRP-ADIESTALGAAFAAGL 363 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~~-~~~e~salGaAllA~~ 363 (417)
++.|.++||+++.|.+.+.+++.|+ .++... +..++.|.|||+.|+.
T Consensus 143 i~~V~lvGG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ 191 (193)
T d1bupa2 143 IHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 191 (193)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHH
T ss_pred CCEEEEECCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHh
Confidence 8899999999999999999999995 667653 5677999999999875
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00022 Score=60.81 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=39.6
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHH
Q 046958 318 FVLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 318 ~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA 361 (417)
+.|+++||+|+-|.+.+++++.||+|+.+.. ..++.|+|||+++
T Consensus 139 ~~IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~ 183 (196)
T d1jcea2 139 RGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVL 183 (196)
T ss_dssp HCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGG
T ss_pred cceEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHH
Confidence 4699999999999999999999999999864 6779999999853
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=95.85 E-value=0.015 Score=50.80 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHHHHHhh---CCcEEccCC-C
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLL---GSPVLRPAD-I 350 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~---g~pv~~~~~-~ 350 (417)
.....++.++++|.++..+...+..+... .. +++|++.||+. .++.+.+.+.+.+ +..+.+++. .
T Consensus 186 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~--~~--------~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~ 255 (267)
T d2ewsa1 186 DFTPSNKLAAVIGVVGEVVTTMAITVARE--FK--------TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGA 255 (267)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TT--------CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGG
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHhh--cC--------CCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 45788999999999999988877776653 33 67899999875 5899999999888 456667664 4
Q ss_pred ChhHHHHHHHH
Q 046958 351 ESTALGAAFAA 361 (417)
Q Consensus 351 e~salGaAllA 361 (417)
.+.++|||++|
T Consensus 256 ~aGaiGA~~L~ 266 (267)
T d2ewsa1 256 FSGAIGALYLE 266 (267)
T ss_dssp GHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 49999999875
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=95.78 E-value=0.0094 Score=50.72 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR 346 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~ 346 (417)
...++++.++-++-.++..++.+........ ...-+..|+++||+|+-+-+.++++++|++||++
T Consensus 95 l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~---~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri 159 (191)
T d1e4ft2 95 LSVIIHARLREIMSKSKKFFREVEAKIVEEG---EIGIPGGVVLTGGGAKIPRINELATEVFKSPVRT 159 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhc---ccccCceEEEecchhhhhhHHHHHHHHHCCCeEE
Confidence 3566788888888777777776654211110 0001345999999999999999999999999975
|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.24 Score=40.28 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-C------CcEEccCC-CCh
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-G------SPVLRPAD-IES 352 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g------~pv~~~~~-~e~ 352 (417)
..++.+++-.+..+...+..+... .+ ++.|++.|+.+..+.+.+.+-..+ . .+|..... .++
T Consensus 89 ~~a~~i~~~~~~~la~~l~~l~~~--ld--------P~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a 158 (170)
T d2aa4a2 89 EQAQQLIHRSARTLARLIADIKAT--TD--------CQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDA 158 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCH
T ss_pred chhHHHHHHHHHHHHHHHHhhhhe--EC--------CCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcH
Confidence 334566666666666666665543 34 688999888776655555443333 2 34555443 568
Q ss_pred hHHHHHHHHH
Q 046958 353 TALGAAFAAG 362 (417)
Q Consensus 353 salGaAllA~ 362 (417)
+++|||++|.
T Consensus 159 ~~~GAA~lA~ 168 (170)
T d2aa4a2 159 GLLGAALLAQ 168 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 8999999985
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.61 Score=37.10 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=33.5
Q ss_pred CceEEEecCccccHHHHHHHHHhhCC---cEEccCCC-ChhHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGS---PVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~---pv~~~~~~-e~salGaAllA 361 (417)
+..|+++||+|+ ++.+.+...++. .+.+++.+ .+.|.|..+++
T Consensus 116 ~~~iil~GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 116 YTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp CCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred cceEEEECchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 788999999984 677888888875 47777654 48899987764
|
| >d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=89.14 E-value=0.34 Score=39.72 Aligned_cols=71 Identities=21% Similarity=0.110 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---------CCcEEccC-CCC
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---------GSPVLRPA-DIE 351 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---------g~pv~~~~-~~e 351 (417)
.++.+++-.+..+...+-.+... .+ ++.|++.||.++.+.+.+.+-+.+ ..+|+... ..+
T Consensus 104 ~a~~i~~~~~~~la~~i~nl~~~--ld--------Pe~IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~lg~~ 173 (186)
T d2ap1a1 104 QAHAHVERYLDLLAVCLGNILTI--VD--------PDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDA 173 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cC--------cCEEEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCCCCh
Confidence 34566666666666666555443 23 688988888887544433222222 22344444 367
Q ss_pred hhHHHHHHHHH
Q 046958 352 STALGAAFAAG 362 (417)
Q Consensus 352 ~salGaAllA~ 362 (417)
++++|||++|.
T Consensus 174 a~~~GAA~lal 184 (186)
T d2ap1a1 174 GGMRGAAFLHL 184 (186)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhh
Confidence 89999998874
|
| >d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=88.01 E-value=1.3 Score=36.54 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhh----------CCcEEccC-CC
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLL----------GSPVLRPA-DI 350 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~----------g~pv~~~~-~~ 350 (417)
++.+++-.+..+...+-.+... .+ ++.|++.|+.++ .+.+.+.+-+.+ ..+|+... ..
T Consensus 102 a~~~~~~~~~~la~~i~nl~~~--ld--------P~~IviGG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~I~~s~lg~ 171 (197)
T d1z05a2 102 AVDVIQQLGRYLGAAIAIVINL--FN--------PEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYK 171 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSS
T ss_pred HHHHHHHHHHHHHHHHHhHHHh--cC--------CCEEEEecchHHhhHHHHHHHHHHHHHhcccccCCCCEEEECCCCC
Confidence 3456666777766666666543 34 688888888776 344433322221 24466554 36
Q ss_pred ChhHHHHHHHH
Q 046958 351 ESTALGAAFAA 361 (417)
Q Consensus 351 e~salGaAllA 361 (417)
+++++|||+++
T Consensus 172 ~a~~~GAA~l~ 182 (197)
T d1z05a2 172 QATMPGAALIK 182 (197)
T ss_dssp CTTHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 68899999887
|
| >d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.52 Score=40.40 Aligned_cols=84 Identities=15% Similarity=0.031 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc-HHHHHHHHHhhC----------Cc-EEccCC
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLLG----------SP-VLRPAD 349 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~g----------~p-v~~~~~ 349 (417)
+.+.|++-.+..+...+..+.+..+.. ..+....-.|+++||..++ +.+.+.+-+.+. .| +.+...
T Consensus 113 ~A~~Il~~aa~~La~~i~~~~~~l~~~--~~~~~~~~~Vvl~Ggv~~~~~~l~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 190 (227)
T d2ch5a1 113 LSRYIFRKAGEMLGRHIVAVLPEIDPV--LFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKL 190 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCGG--GGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCch--hhccccCCCeEEechHhhcchHHHHHHHHHHHHhcchhhcccCCeeEeecC
Confidence 345666666666666665554322211 0000012248999999886 555554444332 12 223334
Q ss_pred CChhHHHHHHHHHHhcCC
Q 046958 350 IESTALGAAFAAGLAIGV 367 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~ 367 (417)
.+.+++|||++|...+|.
T Consensus 191 ~~~p~~GAa~LA~~~~g~ 208 (227)
T d2ch5a1 191 RHSSALGGASLGARHIGH 208 (227)
T ss_dssp SSCTHHHHHHHHHHTTTC
T ss_pred CCccHHHHHHHHHHHcCC
Confidence 667899999999998886
|
| >d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.91 E-value=1.2 Score=35.87 Aligned_cols=70 Identities=16% Similarity=0.038 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHH----HHHhh------C-C-cEEccCC-C
Q 046958 284 RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQI----QADLL------G-S-PVLRPAD-I 350 (417)
Q Consensus 284 rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~----~Adv~------g-~-pv~~~~~-~ 350 (417)
..+++-.+..+...+..+... .+ ++.|++.||.++++.+.+. +.+.. . . +|+.... .
T Consensus 88 ~~~~~~~~~~la~~i~~~i~~--ld--------p~~IvlGG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~s~~~~ 157 (175)
T d2gupa2 88 QEAIERMNRNLAQGLLNIQYL--ID--------PGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHA 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCST
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hc--------CceEEECCcccchHHHHHHHHHHHHHHHhhccccCCCCEEEECCCCC
Confidence 344444555555555444432 24 6889999988887655442 22221 1 1 2555443 5
Q ss_pred ChhHHHHHHHHHH
Q 046958 351 ESTALGAAFAAGL 363 (417)
Q Consensus 351 e~salGaAllA~~ 363 (417)
+++++|||.++..
T Consensus 158 ~a~l~GAa~l~l~ 170 (175)
T d2gupa2 158 DANLYGALVNWLQ 170 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6899999998864
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=86.46 E-value=1.5 Score=35.13 Aligned_cols=71 Identities=10% Similarity=-0.100 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhhC--------CcEEccC-CCCh
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLLG--------SPVLRPA-DIES 352 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~g--------~pv~~~~-~~e~ 352 (417)
++.+++-.+..+...+-.+... .+ ++.|++.|+.++ ++.+.+.+-..+. .+|++.. ..++
T Consensus 80 a~~~~~~~~~~la~~l~n~~~~--~d--------Pe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a 149 (169)
T d2hoea2 80 VKEYFDDIARYFSIGLLNLIHL--FG--------ISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPV 149 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCH
Confidence 3445555555555555554432 23 688999999886 5656554433322 3355544 3679
Q ss_pred hHHHHHHHHHH
Q 046958 353 TALGAAFAAGL 363 (417)
Q Consensus 353 salGaAllA~~ 363 (417)
.++|||+++..
T Consensus 150 ~~~GAa~~~~~ 160 (169)
T d2hoea2 150 IAFGAAVHALE 160 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]
Probab=85.28 E-value=0.59 Score=41.18 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=51.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHH----HhhC-
Q 046958 272 GITRFTSKAHFARAVLESMCFLVKDV----LDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQA----DLLG- 341 (417)
Q Consensus 272 Gl~~~~~~~~l~rAvlEgia~~~~~~----~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~A----dv~g- 341 (417)
++..+.....++|-|++.|.-....+ +-.+-+..+.+ .-.|-+.|+.-+ .|.+.+.+. ++++
T Consensus 146 ~~~~t~~d~~~vr~i~~~V~~RaA~L~Aa~iaai~~~~~~~--------~~~VavDGSv~~~~p~f~~~~~~~l~~l~~~ 217 (262)
T d1ig8a2 146 GINTTVQERKLIRRLSELIGARAARLSVCGIAAICQKRGYK--------TGHIAADGSVYNRYPGFKEKAANALKDIYGW 217 (262)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCS--------SEEEEEESHHHHHSTTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CcEEEEeeeeeecCccHHHHHHHHHHHHhhh
Confidence 34333334444677777766554433 22222224544 455777788754 566555444 4442
Q ss_pred -------CcEEccCCCChhHHHHHHHHHHhc
Q 046958 342 -------SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 342 -------~pv~~~~~~e~salGaAllA~~~~ 365 (417)
++|++....+++.+|||++|+++.
T Consensus 218 ~~~~~~~~~v~l~~a~DGSg~GAAl~Aa~a~ 248 (262)
T d1ig8a2 218 TQTSLDDYPIKIVPAEDGSGAGAAVIAALAQ 248 (262)
T ss_dssp CCCSGGGCSEEEEECCCTTTHHHHHHHHHHH
T ss_pred hhccCCCceEEEEEccCccHHHHHHHHHHHH
Confidence 468887788999999999999884
|
| >d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=85.19 E-value=1.2 Score=36.06 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=30.8
Q ss_pred CceEEEecCccccHH-H---HHHHHHhhC----C---------cEEccC-CCChhHHHHHHHHHHhc
Q 046958 317 EFVLRVDGGATVNNL-L---MQIQADLLG----S---------PVLRPA-DIESTALGAAFAAGLAI 365 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~-~---~q~~Adv~g----~---------pv~~~~-~~e~salGaAllA~~~~ 365 (417)
++.|++.||.++++. + .+.+.+.+. . +|.... ..+++++|||++|...+
T Consensus 104 P~~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~la~~~l 170 (176)
T d1xc3a2 104 PKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAHQAL 170 (176)
T ss_dssp CSCEEEESGGGGSTHHHHHHHHHHHHHHTTSSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEcChhhccHhHHHHHHHHHHHHHHHhhccccccccCCCeEEeCCCCCcHHHHHHHHHHHHHH
Confidence 688999999988643 2 233333322 1 244433 24688999999997653
|
| >d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Glucokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.10 E-value=0.95 Score=39.29 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=52.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHH--------HHHHhhccccccccCCCCCc--eEEEecCcc-ccHHHHHHHHHh-
Q 046958 272 GITRFTSKAHFARAVLESMCFLVKDVL--------DSKQKDAVEKGVIKDAKPEF--VLRVDGGAT-VNNLLMQIQADL- 339 (417)
Q Consensus 272 Gl~~~~~~~~l~rAvlEgia~~~~~~~--------~~l~~~~g~~~~~~~~~~~~--~i~~~GG~a-~s~~~~q~~Adv- 339 (417)
|++.+.....++|.|.+.|.-...... ..+.+ ...+ ... .|-+.|+.- +.|.+.+.+.+.
T Consensus 138 ~~~~s~~d~~~lr~i~~~v~~RaA~L~Aa~i~ail~~~~~-~~~~-------~~~~~~V~~dGSv~~~~p~y~~~l~~~l 209 (243)
T d1v4sa2 138 GLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRE-SRSE-------DVMRITVGVDGSVYKLHPSFKERFHASV 209 (243)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCS-------SSEEEEEEEECHHHHHSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCC-------CCcceEEEecchhhhcCchHHHHHHHHH
Confidence 444433344567778887765543322 22222 1110 022 366668865 467777766653
Q ss_pred ---h-CCcEEccCCCChhHHHHHHHHHHhc
Q 046958 340 ---L-GSPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 340 ---~-g~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+ +.+|.+....+++.+|||++|+++.
T Consensus 210 ~~l~~~~~i~l~~~~DgSg~GAAl~Aa~a~ 239 (243)
T d1v4sa2 210 RRLTPSCEITFIESEEGSGRGAALVSAVAC 239 (243)
T ss_dssp HHHCTTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCcEEEEECCCccHHHHHHHHHHHH
Confidence 3 4678877788999999999999875
|
| >d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=82.92 E-value=0.7 Score=35.61 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=30.5
Q ss_pred CceEEEecCcccc-HHHHHHHHHhhCCcEEccCC-CChhHHHHHHHHHH
Q 046958 317 EFVLRVDGGATVN-NLLMQIQADLLGSPVLRPAD-IESTALGAAFAAGL 363 (417)
Q Consensus 317 ~~~i~~~GG~a~s-~~~~q~~Adv~g~pv~~~~~-~e~salGaAllA~~ 363 (417)
++.|++.||.++. +.|...+. ...||+...- .++..+|||+.|+.
T Consensus 76 Pe~IVlGGgi~~~~~~~~~~l~--~~~~i~~a~l~~~AgliGAAl~a~~ 122 (124)
T d1woqa2 76 PELFIVGGGISKRADEYLPNLR--LRTPIVPAVLRNEAGIVGAAIEIAL 122 (124)
T ss_dssp CSEEEEESGGGGGGGGTGGGCC--CSSCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCEEEEcchHhhChHHHhhhhh--ccCeEEecCcCCcHHHHHHHHHHHh
Confidence 6889998988864 44433322 1356666654 56899999998864
|
| >d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Mlc protein species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=2.5 Score=34.55 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc-HHHHHHHHHhh----------CCcEEccCC-C
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLL----------GSPVLRPAD-I 350 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~----------g~pv~~~~~-~ 350 (417)
++.+++-.+..+...+-.+... .+ ++.|++.|+.++. +.+.+.+-+.+ ..+|+.... .
T Consensus 101 a~~i~~~~~~~la~~i~~l~~~--ld--------P~~IvigG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~~s~l~~ 170 (196)
T d1z6ra3 101 AKDIITGVGAHVGRILAIMVNL--FN--------PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 170 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC--------CSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEecchhhhhHHHHHHHHHHHHHhcccccCCCcEEEECCCCC
Confidence 4566666666666666666543 34 6889999998863 44433222221 245666553 5
Q ss_pred ChhHHHHHHH
Q 046958 351 ESTALGAAFA 360 (417)
Q Consensus 351 e~salGaAll 360 (417)
++.++|||++
T Consensus 171 ~a~~~GAAll 180 (196)
T d1z6ra3 171 QGTMAGAALV 180 (196)
T ss_dssp CTTTTHHHHH
T ss_pred hHHHHHHHHH
Confidence 6889999875
|
| >d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=1.1 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=34.2
Q ss_pred eEEEecCccc-cHHHHHHHHH----hhC-CcEEccCCCChhHHHHHHHHHHhc
Q 046958 319 VLRVDGGATV-NNLLMQIQAD----LLG-SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 319 ~i~~~GG~a~-s~~~~q~~Ad----v~g-~pv~~~~~~e~salGaAllA~~~~ 365 (417)
.|-+.|+.-+ .|.+.+.+.+ +++ .+|.+...++++.+|||++|+++.
T Consensus 187 ~Va~dGSv~~~~p~f~~~~~~~l~~l~~~~~v~~~~~~DGSg~GAAl~Aa~a~ 239 (243)
T d1czan2 187 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAY 239 (243)
T ss_dssp EEEEECHHHHHCSSHHHHHHHHHHHHCTTEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred EEEEechhhhhCchHHHHHHHHHHHHCCCCceEEEEccCCcHHHHHHHHHHHH
Confidence 3566677754 6776665554 444 667777778999999999999875
|