Citrus Sinensis ID: 046971

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MEKHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEKHATQYDFIVAAVTLEdlastvpsqddsdqslTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTwliplhfsfafqfplqtflqsQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYvasafsgpceFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Flexible Loop (DISEMBL)
MEKHATQYDFIVAAVTLEDLastvpsqddsdqslTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVqkiyqtsekwksm
Low Complexity Region (SEG)
MEKHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLElaaisiannvvvalnYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Disordered region (IsUnstruct)
******QYDFIVAAVTLEDL**************TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQ********
Disordered Region (DISOPRED)
***********************************RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Disordered Region (DISEMBL)
MEKHATQYDFIVAAVTLEDLAS************TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Disordered Region (DISPRO)
*************A****************DQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKW***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQTSEKWKSM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.823	0.396	0.300	3e-18
Q8GXM8	476	MATE efflux family protei	no	no	0.635	0.325	0.269	2e-07
Q9SIA5	476	MATE efflux family protei	no	no	0.762	0.390	0.248	2e-06
Q9SIA1	477	MATE efflux family protei	no	no	0.836	0.427	0.255	2e-06
Q9SIA3	476	MATE efflux family protei	no	no	0.766	0.392	0.244	5e-05
Q8RWF5	483	MATE efflux family protei	no	no	0.803	0.405	0.254	0.0002
Q9SIA4	476	MATE efflux family protei	no	no	0.819	0.420	0.253	0.0003
A7KAU3	601	Multidrug and toxin extru	yes	no	0.209	0.084	0.352	0.0007

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 118/256 (46%), Gaps = 55/256 (21%)

Query: 31  DQSLTRKFWT-----ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIAN 85
             ++T ++W      ESK LW + G +I   V +Y L  +T  F GHLG L+LA  SIA 
Sbjct: 36  GSTVTPRWWLKLAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIAT 95

Query: 86  NVVVALNYGLLVILFLSVN--------------------RSFVISLINWKML-------- 117
             +  L YG+++ +  +V                     R+ V+ L     L        
Sbjct: 96  VGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSG 155

Query: 118 -VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVH 176
            +LK +GQ   +A    + +  +IP  ++FA   P+Q FLQ+Q     +A++SL   L+H
Sbjct: 156 PILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLH 215

Query: 177 IF-------VMQLGLIRTAVTSNFSWWVLVF--GMF------------GYVASAFSGPCE 215
                    V+  GL+  A+  +FSWW+LV   GM+            G+   AF G   
Sbjct: 216 TLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWP 275

Query: 216 FVKLSVASGVMLCFSV 231
           + KL+VAS VMLC  +
Sbjct: 276 YFKLTVASAVMLCLEI 291

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 38/193 (19%)

Query: 41  ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVV----VALNYGLL 96
           E KK+  +  P     +A Y L VI+   AGH+G+LELA +++A +       ++ +GL+
Sbjct: 27  ELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLV 86

Query: 97  VILFLSVNRS------------------------FVISLINWKML--VLKLLGQPDDVAE 130
             L     ++                        F+IS++ W  +  +L  LGQ  D++ 
Sbjct: 87  GALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISIL-WIYIEKLLITLGQEPDISR 145

Query: 131 LFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI-------FVMQLG 183
           + G  S WL+P  F+ A   PL  FL +Q     + + ++ +LL HI       F + LG
Sbjct: 146 VAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLG 205

Query: 184 LIRTAVTSNFSWW 196
               A+  + S+W
Sbjct: 206 SNGAAIAISLSFW 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 43/229 (18%)

Query: 24  VPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISI 83
           VPSQ       T     E K++  +  P     +A Y L VI+   AGH G+L+L+ +++
Sbjct: 13  VPSQVTWH---TNPLTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVAL 69

Query: 84  ANNVVVALNYGLLVILFLSVNR----------------------------SFVISLINWK 115
           AN+      + ++  L  ++                               F+IS++ W 
Sbjct: 70  ANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISIL-WL 128

Query: 116 ML--VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASL 173
            +  +L  LGQ  +++ + G  + WLIP  F  A   PL  FL +Q     + + ++ +L
Sbjct: 129 YIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTL 188

Query: 174 LVH-------IFVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCE 215
           L H       +F+  LG    A+ ++ S+W     +  YV   FS  CE
Sbjct: 189 LFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYV--RFSSSCE 235

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 108/254 (42%), Gaps = 50/254 (19%)

Query: 29  DSDQSLTRK----------FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLEL 78
             DQ +TR           F  E K +  +  P     V+ Y L VI+   AGH G+L+L
Sbjct: 8   GDDQLITRNLKSTPTWWMNFTAELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQL 67

Query: 79  AAISIA----NNVVVALNYGLLVILFLSVNRSF---------------VISLINWKMLVL 119
           + +++A    N     + YGL+  L     +++               ++S +   +L+ 
Sbjct: 68  SGVTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLIS 127

Query: 120 KL----------LGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS 169
            L          LGQ  D++++ G  +  LIP   + A Q PL  FLQ+Q     + + +
Sbjct: 128 ILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCA 187

Query: 170 LASLLVHI-------FVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVA 222
           + +LL HI       +   LG    A+    S+W  V  +  YV   FS  CE  +  V+
Sbjct: 188 ITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYV--RFSSACEKTRGFVS 245

Query: 223 SGVMLCFSVQKIYQ 236
              +L  SV++ +Q
Sbjct: 246 DDFVL--SVKQFFQ 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 54/241 (22%)

Query: 41  ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVILF 100
           E KK+  +  P     +A Y L VI+   AGH G+L+L+ +++A +      + ++  L 
Sbjct: 27  ELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLV 86

Query: 101 LSVNR---------------SFVISLINWKMLVLKL--------------LGQPDDVAEL 131
            S+                 ++  S I+  + +  L              LGQ  D++ +
Sbjct: 87  GSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRV 146

Query: 132 FGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-------MQLGL 184
            G  +  LIP  F+ A   PL  FL +Q     + + +L +LL HI V       + LG 
Sbjct: 147 AGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGS 206

Query: 185 IRTAVTSNFSWWVLVFGMFGYVASAFSGPCE----------------FVKLSVASGVMLC 228
              A+  + S+W     +  YV   FS  CE                F +  V S  MLC
Sbjct: 207 NGAALAISVSFWFFAMTLSCYV--RFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLC 264

Query: 229 F 229
            
Sbjct: 265 L 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 40/236 (16%)

Query: 37  KFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVV----VALN 92
            F  E K L  +  P     VA Y L VI+   AGH  +L+L+ +++A +       ++ 
Sbjct: 26  NFTAELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVM 85

Query: 93  YGLLVILFLSVNRSF---------------VISLINWKMLVLKL----------LGQPDD 127
           +GL   L     +++               ++S +   +L+  L          LGQ  D
Sbjct: 86  FGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPD 145

Query: 128 VAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI-------FVM 180
           ++++ G  +  LIP   + A Q PL  FLQ+Q     + + ++ +LL HI       +  
Sbjct: 146 ISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAF 205

Query: 181 QLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVMLCFSVQKIYQ 236
            LG    A+    S+W  V  +  YV   FS  CE  +  V+   +L  SV++ +Q
Sbjct: 206 GLGSNGAALAIGLSYWFNVLILALYV--RFSSSCEKTRGFVSDDFVL--SVKQFFQ 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 41/241 (17%)

Query: 24  VPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISI 83
           VP +D        +   E KK+  +  P     +A Y L VI+   AGH G+L+L+ +++
Sbjct: 13  VPCKDTWKSG---QVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVAL 69

Query: 84  ANNVVVALNYGLLVILFLSVNR-----------------SFVISLINWKMLVL------- 119
           A +      + +L  L  ++                   ++  +  N  + VL       
Sbjct: 70  ATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIY 129

Query: 120 --KLL---GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLL 174
             KLL   GQ  D++ + G  + WLIP  F+ AF  PL  FL +Q     + + +L +LL
Sbjct: 130 IEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLL 189

Query: 175 VHI-------FVMQLGLIRTAVTSNFSWWVLVFGMFGYVASAFSGPCEFVKLSVASGVML 227
            HI       +   LG    A+  + S+W  V  +  YV   +S  C+  ++ V+S  + 
Sbjct: 190 FHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYV--RYSSSCDKTRVFVSSDFVS 247

Query: 228 C 228
           C
Sbjct: 248 C 248

Arabidopsis thaliana (taxid: 3702)

>sp|A7KAU3|S47A2_RABIT Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 34  LTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIA 84
           L R FW E++ L+ + GP    +V ++  +V+   F GHLG +ELA++++ 
Sbjct: 52  LPRGFWDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLG 102

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide, metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, and ganciclovir. Responsible for the secretion of cationic drugs across the brush border membranes.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
356497726	491	PREDICTED: protein TRANSPARENT TESTA 12-	0.860	0.427	0.517	3e-62
302142014	521	unnamed protein product [Vitis vinifera]	0.831	0.389	0.515	9e-60
359492469	490	PREDICTED: protein TRANSPARENT TESTA 12-	0.831	0.414	0.515	1e-59
224097194	488	predicted protein [Populus trichocarpa]	0.938	0.469	0.494	1e-59
357485623	490	Protein TRANSPARENT TESTA [Medicago trun	0.807	0.402	0.548	3e-59
449438809	484	PREDICTED: protein TRANSPARENT TESTA 12-	0.885	0.446	0.496	4e-58
255586693	482	multidrug resistance pump, putative [Ric	0.827	0.419	0.521	9e-57
255586695	507	multidrug resistance pump, putative [Ric	0.864	0.416	0.517	1e-56
350534468	447	ripening regulated protein DDTFR18 [Sola	0.831	0.454	0.476	5e-56
356508053	503	PREDICTED: protein TRANSPARENT TESTA 12	0.926	0.449	0.467	2e-55

>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/259 (51%), Positives = 167/259 (64%), Gaps = 49/259 (18%)

Query: 21  ASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAA 80
           A  +  + + DQS  R+FW ESK+LWHIVGP+IF+R+ASYS+ VITQAFAGHLGDLELAA
Sbjct: 19  AHPLTDEREQDQSFPRRFWLESKRLWHIVGPSIFSRIASYSMLVITQAFAGHLGDLELAA 78

Query: 81  ISIANNVVVALNYGLLV--------------------ILFLSVNRSFVISLINWKML--- 117
           ISIANNVVV  ++GLL+                    +L + + RS+++  I    L   
Sbjct: 79  ISIANNVVVGFDFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFICCIFLLPL 138

Query: 118 ------VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLA 171
                 VLKLLGQP+++AEL G VS W+IP+HF+FAFQFPLQ FLQ QLKT  IAWVSL 
Sbjct: 139 YLFASPVLKLLGQPEELAELSGAVSIWMIPVHFAFAFQFPLQRFLQCQLKTAPIAWVSLV 198

Query: 172 SLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYV-------------ASAFS 211
           +L+VH+FV       +Q G++  A T NFSWWVL  G+FGYV               AFS
Sbjct: 199 ALVVHVFVSWLFVFKLQFGVVGAAATINFSWWVLTLGLFGYVVWGGCPHTWSGFSVEAFS 258

Query: 212 GPCEFVKLSVASGVMLCFS 230
           G  EF+KLS A+GVMLC  
Sbjct: 259 GLWEFLKLSAAAGVMLCLE 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 162/252 (64%), Gaps = 49/252 (19%)

Query: 28  DDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV 87
           D   + L  + W ESKKLWHIVGP+IF+RVASYS+ V+TQAFAGHLG+LELA+ISIAN V
Sbjct: 55  DPEKEKLASRVWIESKKLWHIVGPSIFSRVASYSMNVVTQAFAGHLGELELASISIANTV 114

Query: 88  VVALNYGLLV--------------------ILFLSVNRSFVISLIN---------WKMLV 118
           +V  N+GLL+                    +L + + RS+++  +          +   +
Sbjct: 115 IVGFNFGLLLGMASALETLCGQAFGAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPL 174

Query: 119 LKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIF 178
           LKLLGQPDDVAE  G+V+  LIPLHFSFAFQFPLQ FLQSQLKT VIAWVSL + ++H+F
Sbjct: 175 LKLLGQPDDVAEQSGLVALCLIPLHFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVF 234

Query: 179 V-------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS-------------AFSGPCEFVK 218
           +       ++ G+I TA+T NFSWW+LVFGM GY                AFSG  EFVK
Sbjct: 235 ISWLFVYKLEFGIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVK 294

Query: 219 LSVASGVMLCFS 230
           LS ASGVMLC  
Sbjct: 295 LSTASGVMLCLE 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 162/252 (64%), Gaps = 49/252 (19%)

Query: 28  DDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV 87
           D   + L  + W ESKKLWHIVGP+IF+RVASYS+ V+TQAFAGHLG+LELA+ISIAN V
Sbjct: 24  DPEKEKLASRVWIESKKLWHIVGPSIFSRVASYSMNVVTQAFAGHLGELELASISIANTV 83

Query: 88  VVALNYGLLV--------------------ILFLSVNRSFVISLIN---------WKMLV 118
           +V  N+GLL+                    +L + + RS+++  +          +   +
Sbjct: 84  IVGFNFGLLLGMASALETLCGQAFGAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPL 143

Query: 119 LKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIF 178
           LKLLGQPDDVAE  G+V+  LIPLHFSFAFQFPLQ FLQSQLKT VIAWVSL + ++H+F
Sbjct: 144 LKLLGQPDDVAEQSGLVALCLIPLHFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVF 203

Query: 179 V-------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS-------------AFSGPCEFVK 218
           +       ++ G+I TA+T NFSWW+LVFGM GY                AFSG  EFVK
Sbjct: 204 ISWLFVYKLEFGIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVK 263

Query: 219 LSVASGVMLCFS 230
           LS ASGVMLC  
Sbjct: 264 LSTASGVMLCLE 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/279 (49%), Positives = 168/279 (60%), Gaps = 50/279 (17%)

Query: 1   MEKHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASY 60
           M  +    D++ A V L +   T    D   Q L  +   ESKKLWHIVGP IF+R+ SY
Sbjct: 1   MSSNGAVLDYLEAKVPLLE-EKTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTSY 59

Query: 61  SLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLV--------------------ILF 100
           S+ VITQAFAGHLGDLELA ISIANNV+V  ++GLL+                    +L 
Sbjct: 60  SMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLG 119

Query: 101 LSVNRSFVISLINWKML---------VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFP 151
           + + RS+++  +   +L         VLKLLGQP+D+AEL G  + W+IPLHFSFAFQFP
Sbjct: 120 VYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQFP 179

Query: 152 LQTFLQSQLKTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFG 204
           LQ FLQSQLK  VIAWVS  +L+VHIFV       +QLG+  TA+T NFSWWVLVFG+ G
Sbjct: 180 LQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLLG 239

Query: 205 YV-------------ASAFSGPCEFVKLSVASGVMLCFS 230
           Y                AFSG  EF KLS ASGVMLC  
Sbjct: 240 YTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLE 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 157/246 (63%), Gaps = 49/246 (19%)

Query: 32  QSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL 91
           Q LTRK W ESKKLWHIVGP IF+R+ASY + VITQ+FAGHLGDLELAAISIANNVVV  
Sbjct: 28  QDLTRKVWIESKKLWHIVGPAIFSRIASYMMLVITQSFAGHLGDLELAAISIANNVVVGF 87

Query: 92  NYGLLV--------------------ILFLSVNRSFVISLINWKML---------VLKLL 122
           ++GLL+                    +L + + RS+++  I    L         VL+LL
Sbjct: 88  DFGLLLGMASALETLCGQAYGAKQYYMLGVYMQRSWIVLFICCIFLLPIYLFATPVLRLL 147

Query: 123 GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV--- 179
           GQP+D+A L G VS W+IPLHF+FAFQFPL  FLQSQLKT  IAWVSL +LLVHIFV   
Sbjct: 148 GQPEDLAVLSGQVSMWMIPLHFAFAFQFPLNRFLQSQLKTAAIAWVSLFALLVHIFVSWL 207

Query: 180 ----MQLGLIRTAVTSNFSWWVLVFGMF-------------GYVASAFSGPCEFVKLSVA 222
                Q G+I TA T NFSWW L  G+F             G+   AFSG  EFVKLS A
Sbjct: 208 FVFKFQFGVIGTAATLNFSWWALTVGLFCYTVYGGCPLTWNGFSMEAFSGLWEFVKLSAA 267

Query: 223 SGVMLC 228
           SGVMLC
Sbjct: 268 SGVMLC 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/266 (49%), Positives = 171/266 (64%), Gaps = 50/266 (18%)

Query: 15  VTLEDLASTVPSQDDSD-QSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL 73
           V L +L   +  +DD++  SL+ + W ESK+LWHIVGP IF+RVASYS+ VITQAFAGHL
Sbjct: 6   VPLLELKPQIIEEDDANGSSLSTRIWVESKQLWHIVGPAIFSRVASYSMLVITQAFAGHL 65

Query: 74  GDLELAAISIANNVVVALNYGLLV--------------------ILFLSVNRSFVISLIN 113
           GDLELAA+SIANNV+V  ++GLL+                    +L + + RS+++  I 
Sbjct: 66  GDLELAAMSIANNVIVGFDFGLLLGMASALETLCGQAYGAKKFHMLGIYMQRSWIVLFIC 125

Query: 114 WKML---------VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKV 164
             ++         VLKLLGQP D+AE+ G V+   +PLHFSFA QFPLQ FLQSQLKT V
Sbjct: 126 SILILPIYLFSTPVLKLLGQPSDLAEMAGKVAMVFLPLHFSFAIQFPLQRFLQSQLKTAV 185

Query: 165 IAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMF-------------G 204
           IA++SL +L+VHI V       ++LGL+ TA+T+N SWWVLVFG+              G
Sbjct: 186 IAYLSLVALVVHILVSWLFVYGLKLGLVGTAITTNISWWVLVFGLLFYTICGGCPGTWCG 245

Query: 205 YVASAFSGPCEFVKLSVASGVMLCFS 230
           +   AFSG  EFVKLS ASGVM+C  
Sbjct: 246 FSFEAFSGLWEFVKLSTASGVMICLE 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 131/251 (52%), Positives = 161/251 (64%), Gaps = 49/251 (19%)

Query: 29  DSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVV 88
           D + +L+RK W ESKKLW IVGP IF+R+AS+S+ VITQAFAGHLGDLELAAISIANNV+
Sbjct: 22  DEEDNLSRKVWIESKKLWQIVGPAIFSRLASFSMIVITQAFAGHLGDLELAAISIANNVI 81

Query: 89  VALNYGLLV--------------------ILFLSVNRSFVISLINWKMLV---------L 119
           +  + GLL+                    +L + + RS+++  +   +L+         L
Sbjct: 82  IGFDLGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCVLLLPLYLFASPFL 141

Query: 120 KLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV 179
           KLLGQP+DVAEL G+VS ++IPLHFSFAFQFPLQ FLQSQLK  VIA ++   L+VH+ V
Sbjct: 142 KLLGQPNDVAELSGIVSIYMIPLHFSFAFQFPLQRFLQSQLKNTVIALITFVGLVVHVIV 201

Query: 180 -------MQLGLIRTAVTSNFSWWVLVFGMFGYV-------------ASAFSGPCEFVKL 219
                   QLG+I TA+T NFSWWVLVFG  GYV               AFSG  EF KL
Sbjct: 202 SWLLVYRFQLGVIGTAMTLNFSWWVLVFGHLGYVIFGGCPLTWKGFSTEAFSGLWEFTKL 261

Query: 220 SVASGVMLCFS 230
           S ASGVMLC  
Sbjct: 262 SAASGVMLCLE 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/261 (51%), Positives = 165/261 (63%), Gaps = 50/261 (19%)

Query: 17  LEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDL 76
           L+DL   V  +DD + SL+RK W ESKKLW I GP IF+RVAS+S+ VITQAFAGHLG+L
Sbjct: 11  LKDLDRKV-EEDDIELSLSRKVWIESKKLWEIAGPAIFSRVASFSMLVITQAFAGHLGNL 69

Query: 77  ELAAISIANNVVVALNYGLLV--------------------ILFLSVNRSFVISLINWKM 116
           ELAAISIANNV+V  ++GLL+                    +L + + RS+++  +   +
Sbjct: 70  ELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCVL 129

Query: 117 L---------VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW 167
           L         VL LLGQP DVAEL G+VS +LIPLHFSFAFQFPLQ FLQ QLK  V A 
Sbjct: 130 LLPLYLFASPVLTLLGQPKDVAELSGVVSIYLIPLHFSFAFQFPLQRFLQCQLKNTVTAL 189

Query: 168 VSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYV-------------A 207
           +SL +L VH+ V       + LG+I TA+T NFSWWVLVFG  GY+              
Sbjct: 190 ISLVALAVHVIVSWLFVYKLHLGVIGTAMTLNFSWWVLVFGHLGYIIFGGCPLTWNGFSI 249

Query: 208 SAFSGPCEFVKLSVASGVMLC 228
            AFSG  +F KLS ASGVMLC
Sbjct: 250 EAFSGLWDFTKLSAASGVMLC 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534468|ref|NP_001234398.1| ripening regulated protein DDTFR18 [Solanum lycopersicum] gi|12231296|gb|AAG49032.1|AF204785_1 ripening regulated protein DDTFR18 [Solanum lycopersicum]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/252 (47%), Positives = 161/252 (63%), Gaps = 49/252 (19%)

Query: 28  DDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV 87
           ++  + L  + W E+KKLWHIVGP IF+R+ASY++ +ITQ+FAGHLG+++LAAISI+N V
Sbjct: 16  ENKIEDLKTRVWIETKKLWHIVGPAIFSRIASYTMNIITQSFAGHLGEVQLAAISISNTV 75

Query: 88  VVALNYGLLV--------------------ILFLSVNRSFVISLINWKML---------V 118
           +V LN+GLL+                    +L + + RS+++  +   +L         +
Sbjct: 76  IVGLNFGLLLGMASALETLCGQAYGAKKHHMLGIYMQRSWIVLTLCCFLLLPMYIYATPI 135

Query: 119 LKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVH-- 176
           LK LGQPDDVAEL G+V+ W IPLHFSFAFQFP+Q FLQSQLKT VIAW+SLA L +H  
Sbjct: 136 LKSLGQPDDVAELSGIVALWFIPLHFSFAFQFPIQRFLQSQLKTVVIAWISLAVLAIHTV 195

Query: 177 -----IFVMQLGLIRTAVTSNFSWWVLVFGMF-------------GYVASAFSGPCEFVK 218
                ++ + LGL+  AV  + SWW+LV GMF             G+ A AFSG CEF +
Sbjct: 196 ISWLFVYKLNLGLVGAAVALDISWWLLVVGMFMYAACGGCPETWTGFSAQAFSGLCEFFR 255

Query: 219 LSVASGVMLCFS 230
           LS A+GVMLC  
Sbjct: 256 LSAAAGVMLCLE 267

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/276 (46%), Positives = 166/276 (60%), Gaps = 50/276 (18%)

Query: 4   HATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLF 63
           HA   +   A +   D A      DD +Q    K W E++KLW IVGP+IF+R+AS+++ 
Sbjct: 10  HANGENLTEALLPTRD-AQQQHQTDDEEQRFGDKLWLETRKLWLIVGPSIFSRLASFTMN 68

Query: 64  VITQAFAGHLGDLELAAISIANNVVVALNYGLLV--------------------ILFLSV 103
           V+TQAFAGHLGD+ELAAISIANNV+V  N+GLL+                    +L + +
Sbjct: 69  VVTQAFAGHLGDVELAAISIANNVLVGFNFGLLLGMASALETLCGQAFGAKRYHLLGIYM 128

Query: 104 NRSFVISLINWKML---------VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQT 154
            RS+++  +   +L         +LK LGQPDDVAE  G+V+ WLIPLHFSFAFQFP+Q 
Sbjct: 129 QRSWIVLFMCCFLLLPFYVFATPLLKFLGQPDDVAEWSGVVAVWLIPLHFSFAFQFPMQR 188

Query: 155 FLQSQLKTKVIAWVSLASLLVH-------IFVMQLGLIRTAVTSNFSWWVLVFGMFGYVA 207
           FLQ QLKT VIAWVSL  L+V+       I+V   GL   A++ + SWWVLVFGM+ Y+A
Sbjct: 189 FLQCQLKTAVIAWVSLLGLVVNVVTSWLFIYVWDFGLYGAAISLDISWWVLVFGMYAYIA 248

Query: 208 -------------SAFSGPCEFVKLSVASGVMLCFS 230
                         AFSG  EF+ LS ASGVMLC  
Sbjct: 249 YGGCPLTWNGFSLEAFSGLWEFLTLSSASGVMLCLE 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.434	0.215	0.487	7.2e-37
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.360	0.181	0.505	1.4e-35
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.438	0.218	0.439	9.7e-35
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.278	0.137	0.382	1.2e-17
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.459	0.224	0.330	1.5e-17
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.401	0.198	0.333	6.3e-17
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.459	0.224	0.322	1.1e-16
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.442	0.199	0.347	1.1e-16
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.311	0.153	0.376	1.8e-16
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.663	0.334	0.282	4.1e-16

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
 Identities = 57/117 (48%), Positives = 77/117 (65%)

Query:    97 VILFL-SVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTF 155
             ++LFL S+    ++ +  +   +LK +GQPDD+AEL G++S W IP HFSFAF FP+  F
Sbjct:   127 IVLFLFSI---LLLPMYIFATPILKFMGQPDDIAELSGIISVWAIPTHFSFAFFFPINRF 183

Query:   156 LQSQLKTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGY 205
             LQ QLK  VIA  S  SL+VHIFV       ++LG+I T  T+N SWW+ VF +F Y
Sbjct:   184 LQCQLKNSVIAISSGVSLVVHIFVCWLFVYVLELGVIGTIATANVSWWLNVFILFTY 240

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
 Identities = 48/95 (50%), Positives = 64/95 (67%)

Query:   118 VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI 177
             VLK LGQPDD+AEL G+V+ W+IPLHF+F   FPLQ FLQ QLK +V A+ +  +L+VHI
Sbjct:   143 VLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHI 202

Query:   178 FV-------MQLGLIRTAVTSNFSWWVLVFGMFGY 205
              V       ++LG++ T  T + SWWV V  +  Y
Sbjct:   203 LVCWLFVDGLKLGVVGTVATISISWWVNVLILLVY 237

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 9.7e-35, Sum P(2) = 9.7e-35
 Identities = 51/116 (43%), Positives = 71/116 (61%)

Query:    97 VILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFL 156
             +ILFL      ++ +  +   +LK +GQ DD+AEL G ++ W+IP+HF+FAF FPL  FL
Sbjct:   125 IILFLCC--ILLLPMYLFATPILKFIGQSDDIAELTGTIALWVIPVHFAFAFFFPLNRFL 182

Query:   157 QSQLKTKVIAWVSLASLLVHIFVM-------QLGLIRTAVTSNFSWWVLVFGMFGY 205
             Q QLK KVIA  +  SL VHI V        +LG+I T  + N  WW+ +F +F Y
Sbjct:   183 QCQLKNKVIAISAGVSLAVHILVCWFFVYGYKLGIIGTMASVNVPWWLNIFILFLY 238

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query:   118 VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI 177
             +L  LGQ + +  +  +++ W+I ++FSF   F  Q FLQ+Q K K+IA+V+  SL VH+
Sbjct:   142 ILLALGQEERIVRVARIIALWVIGINFSFVPSFTCQMFLQAQSKNKIIAYVAAVSLGVHV 201

Query:   178 FVMQLGLI 185
             F+  L ++
Sbjct:   202 FLSWLLMV 209

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 41/124 (33%), Positives = 67/124 (54%)

Query:    99 LFLSVNRSFVISLIN-WKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQ 157
             + L+V  + ++SL+  +   +L  +GQ   ++   G+ S ++IP  F++A  +P   FLQ
Sbjct:   132 VILNVT-AVILSLLYIFAAPILAFIGQTPAISSATGIFSIYMIPQIFAYAVNYPTAKFLQ 190

Query:   158 SQLKTKVIAWVSLASLLVHI----FV---MQLGLIRTAVTSNFSWWVLVFGMFGYVASAF 210
             SQ K  V+A +S  +L++H+    FV   +Q G    AV  N SWW +V     Y+   F
Sbjct:   191 SQSKIMVMAAISAVALVLHVLLTWFVIEGLQWGTAGLAVVLNASWWFIVVAQLVYI---F 247

Query:   211 SGPC 214
             SG C
Sbjct:   248 SGTC 251

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
 Identities = 34/102 (33%), Positives = 56/102 (54%)

Query:   118 VLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI 177
             +L  LGQ D +  +  +++ WLI ++F+F   F  Q FLQSQ K K+IA+VS  +L +H+
Sbjct:   142 ILLALGQEDHIVRVARVIALWLIAINFTFVPAFTCQIFLQSQSKNKIIAYVSAVTLGLHV 201

Query:   178 FVMQLGLIRT--AVTSNFSWWVLVFGMFGYVASAF--SGPCE 215
             F   L ++     +T   +  ++ F M   V   +  SG C+
Sbjct:   202 FFSWLLVVHFNFGITGAMTSTLVAFWMPNIVQLLYVTSGGCK 243

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 40/124 (32%), Positives = 66/124 (53%)

Query:    99 LFLSVNRSFVISLIN-WKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQ 157
             + L+V  + ++SL+  +   +L  +GQ   ++   G+ S ++IP  F++A  FP   FLQ
Sbjct:   132 VILNVT-ALILSLLYIFAAPILASIGQTAAISSAAGIFSIYMIPQIFAYAINFPTAKFLQ 190

Query:   158 SQLKTKVIAWVSLASLLVHI----FV---MQLGLIRTAVTSNFSWWVLVFGMFGYVASAF 210
             SQ K  V+A +S  +L++H+    FV   +Q G+   AV  N SW  +      Y+   F
Sbjct:   191 SQSKIMVMAVISAVALVIHVPLTWFVIVKLQWGMPGLAVVLNASWCFIDMAQLVYI---F 247

Query:   211 SGPC 214
             SG C
Sbjct:   248 SGTC 251

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 41/118 (34%), Positives = 62/118 (52%)

Query:    96 LVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTF 155
             L++L  SV    ++ L  +   +L LLGQ  ++AE+ G  +T +IP  F+ A  FP Q F
Sbjct:   175 LILLGTSV---CLLPLYIYATPLLILLGQEPEIAEISGKFTTQIIPQMFALAINFPTQKF 231

Query:   156 LQSQLKTKVIAWVSLASLLVHIFVMQL-------GLIRTAVTSNFSWWVLVFGMFGYV 206
             LQSQ K  ++AW+   +L +HIF++ L       GL   A   + S W +      YV
Sbjct:   232 LQSQSKVGIMAWIGFFALTLHIFILYLFINVFKWGLNGAAAAFDVSAWGIAIAQVVYV 289

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
 Identities = 29/77 (37%), Positives = 38/77 (49%)

Query:    22 STVPSQDDSDQ-SLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLEXXX 80
             ST    +D D   +  K W ESKKLW + GP IF R ++  L +I+QAF GHLG  E   
Sbjct:    16 STENRGEDRDGLGMKEKVWRESKKLWVVAGPAIFTRFSTSGLSLISQAFIGHLGSTELAA 75

Query:    81 XXXXXXXXXXXXYGLLV 97
                          G+L+
Sbjct:    76 YSITLTVLLRFSNGILL 92

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 58/205 (28%), Positives = 96/205 (46%)

Query:    36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLEXXXXXXXXXXXXXXXYGL 95
             ++F  ESK+LW + GP IF  ++ YSL  +TQ F+G LG+LE               +G+
Sbjct:    30 KEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAVSVENSVISGLAFGV 89

Query:    96 LV--------------------ILFLSVNRSFVISLIN---------WKMLVLKLLGQPD 126
             ++                    ++ + + RS+VI             W   +L   G+  
Sbjct:    90 MLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYIWAPPILSFFGEAP 149

Query:   127 DVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIR 186
              +++  G  + W+IP  F++A  FP+Q FLQSQ K  V+AW+S   L++H          
Sbjct:   150 HISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIH---------- 199

Query:   187 TAVTSNFSWWVLVFGMFGYVASAFS 211
              AV   FSW  +++  +G V +A +
Sbjct:   200 -AV---FSWLFILYFKWGLVGAAIT 220

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0019033701	hypothetical protein (488 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.3697.1	hypothetical protein (426 aa)			•						0.461
	estExt_Genewise1_v1.C_LG_IX1583	hypothetical protein (460 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-34
pfam01554	161	pfam01554, MatE, MatE	5e-11
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	9e-09
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	6e-06
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	8e-06
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	7e-05

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  127 bits (321), Expect = 2e-34
 Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 56/242 (23%)

Query: 41  ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVV----------- 89
           E+KKL  +  P +   +  YSL V++  F GHLG LELAA S+A++              
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 90  ------------ALNYGLL--------VILFLSVNRSFVISLINWKM-LVLKLLGQPDDV 128
                       A NY L+        VIL L       ISL+      +L LLGQ  ++
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLC---CVPISLLWLNTEPILLLLGQDPEI 117

Query: 129 AELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHI-------FVMQ 181
           A L G    WLIP  F++A   PL+ +LQ+Q     + ++SL +LL++I       FV+ 
Sbjct: 118 ARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLG 177

Query: 182 LGLIRTAVTSNFSWWVLVFGMFGYV--------------ASAFSGPCEFVKLSVASGVML 227
           LG I  A+ ++ S+W++V  +  Y+                AF G   F+KL++ S +ML
Sbjct: 178 LGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALML 237

Query: 228 CF 229
           C 
Sbjct: 238 CL 239

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 59.1 bits (144), Expect = 5e-11
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 33/160 (20%)

Query: 51  PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVV---------------------- 88
           P I   +      +I   F GHLG + LAA+SIAN++                       
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLIFMFLLGLSTALTTLVGQAL 60

Query: 89  ---------VALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWL 139
                    VAL  GL++ L +S+  + +I L  ++  +L L  Q ++V EL       L
Sbjct: 61  GAGNFKRAGVALRQGLILSLLISLPIALLIIL--FREPILSLFTQDEEVLELASKYLRIL 118

Query: 140 IPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV 179
                  + QF L  FL+    TK   +++L SLL++I +
Sbjct: 119 ALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPL 158

The MatE domain. Length = 161

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 54.8 bits (133), Expect = 9e-09
 Identities = 40/210 (19%), Positives = 87/210 (41%), Gaps = 47/210 (22%)

Query: 41  ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV---VVALNYGLLV 97
           E + L  +  P +  ++A  ++  +    AG LG  +LAA+++ +++   V     GLL+
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPVFTFGMGLLL 60

Query: 98  I------------------------LFLSVNRSFVISLINWK-MLVLKLLGQPDDVAELF 132
                                    L+L++  S  + L+ W    +L L+GQ  +VA + 
Sbjct: 61  AVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAIA 120

Query: 133 GM----VSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIF---------- 178
                 ++  + P      FQ  L++FL +  +T+    ++L +L+++I           
Sbjct: 121 RGYLLALAWGIPPA---LLFQV-LRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKF 176

Query: 179 -VMQLGLIRTAVTSNFSWWVLVFGMFGYVA 207
            +  LG     + +   +W++   +  Y+ 
Sbjct: 177 GLPALGGAGAGLATAIVYWLMFLALAFYIR 206

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 56/235 (23%)

Query: 51  PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV----------------------- 87
           P I   +    L ++  AF GHLG ++LAA+S+ ++V                       
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAV 60

Query: 88  --------VVALNYGLLVILFLSVNRSFVISLINWKMLVLKLLGQPDDVAELFGMVSTWL 139
                          LL+ L L +    V         +L L+G   +VAEL       L
Sbjct: 61  GAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFI--DPLLSLMGADGEVAELAQDYLRIL 118

Query: 140 IPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV---------MQLGLIRTAVT 190
           I    ++   F L+ FL+ Q  TK   +++L   +++I +           LG++  A+ 
Sbjct: 119 ILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALA 178

Query: 191 SNFSWWV-LVFGMF-------------GYVASAFSGPCEFVKLSVASGVMLCFSV 231
           +  S+W+  +  ++             G +   +      +KL +     +    
Sbjct: 179 TVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILES 233

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 29/194 (14%)

Query: 39  WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNV----------- 87
               K++  +  P     ++    F++   F   LG + LAA  IA  +           
Sbjct: 237 RKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGI 296

Query: 88  ------VVALNYG------LLVILFLSVNRSFVISLINWKMLVL------KLLGQPDDVA 129
                 +V  N G            L++  S +I+L+   +L+L       L     +V 
Sbjct: 297 AQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVI 356

Query: 130 ELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFVMQLGLIRTAV 189
            L  ++             QF L   L+     K+   +SL S       +   L    +
Sbjct: 357 ALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFL 416

Query: 190 TSNFSWWVLVFGMF 203
                W      + 
Sbjct: 417 GLAGVWIGFPLSLI 430

Length = 455

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 33/176 (18%)

Query: 34  LTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVV----- 88
           L   F    K L  +  P I   +      ++     GHLG   LAA+ +AN +      
Sbjct: 8   LEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIA 67

Query: 89  --------------------------VALNYGLLVILFLSVNRSFVISLINWKMLVLKLL 122
                                       L  GLL+ L L +    ++ L   + L L+LL
Sbjct: 68  IFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGL-LLAILLLFFAEPL-LRLL 125

Query: 123 GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIF 178
           G P +V EL       ++         F L   L+    TK   ++ L   L++I 
Sbjct: 126 GAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIV 181

Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.94
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.94
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.93
PRK10189	478	MATE family multidrug exporter; Provisional	99.93
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.91
PRK01766	456	multidrug efflux protein; Reviewed	99.9
PRK00187	464	multidrug efflux protein NorA; Provisional	99.8
PRK01766	456	multidrug efflux protein; Reviewed	99.79
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.76
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.75
PRK10189	478	MATE family multidrug exporter; Provisional	99.74
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.69
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.65
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.64
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.52
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.49
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.47
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.38
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.29
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.28
PRK15099	416	O-antigen translocase; Provisional	99.26
PRK15099	416	O-antigen translocase; Provisional	99.2
PRK10459	492	colanic acid exporter; Provisional	99.18
COG2244	480	RfbX Membrane protein involved in the export of O-	98.79
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.53
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.48
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.24
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.89
KOG1347	473	consensus Uncharacterized membrane protein, predic	97.87
PRK10459	492	colanic acid exporter; Provisional	97.87
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.66
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	97.26
COG0728	518	MviN Uncharacterized membrane protein, putative vi	96.81
COG2244	480	RfbX Membrane protein involved in the export of O-	96.3
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	93.69
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	88.82
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	87.67

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.96  E-value=6.5e-27  Score=219.08  Aligned_cols=198  Identities=20%  Similarity=0.229  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL---------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~---------------   99 (244)
                      .+++.|+++|+++|++++++.+++++++|++++||+|++++||+++++++.++.   ..++..|.               
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            677999999999999999999999999999999999999999999999998852   22233332               


Q ss_pred             -HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 046971          100 -FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWV  168 (244)
Q Consensus       100 -~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i  168 (244)
                       +...++++.+          ...++.+++++++++++|+.+.+.+|+++..++.|+..++.++++++|+.||+|+||++
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence             1222222221          11288999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--------hc-CCchHHHHHHHHHHHHHHHHHHHHHH--H-------------hhccHHHHHHHHHHHH
Q 046971          169 SLASLLVHIFV--------MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA--S-------------AFSGPCEFVKLSVASG  224 (244)
Q Consensus       169 ~li~~vv~i~l--------~~-lGv~Gaa~A~~is~~~~~ll~~~~~~--~-------------~~~~~~~~lkig~P~~  224 (244)
                      +++++++|+++        .+ ||+.|+|+||.+++++.+++.++++.  .             .++.+|+++|+|.|++
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            99999999999        34 99999999999999999998877764  1             1235789999999999


Q ss_pred             HHHHHHHHHHH
Q 046971          225 VMLCFSVQKIY  235 (244)
Q Consensus       225 ~~~~~e~~~~~  235 (244)
                      ++...|...+.
T Consensus       252 ~~~~~~~~~~~  262 (455)
T COG0534         252 LESLSESLGFL  262 (455)
T ss_pred             HHHHHHHHHHH
Confidence            99988876653

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.94  E-value=1.1e-24  Score=204.21  Aligned_cols=196  Identities=16%  Similarity=0.165  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL---------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~---------------   99 (244)
                      .+++.|+++++++|..++++.+.+.+++|++++||+|++++||++++.++.+++   ..++..|.               
T Consensus         5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~   84 (464)
T PRK00187          5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG   84 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            467899999999999999999999999999999999999999999999998752   22333333               


Q ss_pred             -HHHHHHHHHH---------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971          100 -FLSVNRSFVI---------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS  169 (244)
Q Consensus       100 -~~~~~~~~~~---------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~  169 (244)
                       +...++++.+         ....+.++++++++.|+|+.+.+.+|+++..+++|+..+...+++++|++||++++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~  164 (464)
T PRK00187         85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS  164 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence             1222222111         111567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H------h-------hccHHHHHHHHHH
Q 046971          170 LASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S------A-------FSGPCEFVKLSVA  222 (244)
Q Consensus       170 li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~------~-------~~~~~~~lkig~P  222 (244)
                      +++.++|+++           |++|+.|+|+|+.+++....+.+.++++   .      .       ++.+|+++|+|+|
T Consensus       165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P  244 (464)
T PRK00187        165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP  244 (464)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence            9999999888           4699999999999999888776554443   0      0       1235899999999


Q ss_pred             HHHHHHHHHHH
Q 046971          223 SGVMLCFSVQK  233 (244)
Q Consensus       223 ~~~~~~~e~~~  233 (244)
                      .+++.+.|...
T Consensus       245 ~~~~~~~~~~~  255 (464)
T PRK00187        245 IGGTYAVEVGL  255 (464)
T ss_pred             HHHHHHHHHHH
Confidence            99988887644

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.94  E-value=2.4e-24  Score=201.00  Aligned_cols=197  Identities=13%  Similarity=0.129  Sum_probs=160.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHH---HHHHHHHHH--------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVA---LNYGLLVIL--------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~---~~~~i~~G~--------------   99 (244)
                      .+++.|+++|+++|+.++++.+++++++|+.++||+ |++++||++++.++.++   ...++..|.              
T Consensus         4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            467899999999999999999999999999999999 67799999999988764   222333332              


Q ss_pred             --HHHHHHHHHHHH----------HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971          100 --FLSVNRSFVISL----------INWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW  167 (244)
Q Consensus       100 --~~~~~~~~~~~~----------~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~  167 (244)
                        +...+++..+..          ..+.+++++++++|+|+.+.+.+|+++..++.|+..+..++++++||.||+|.||+
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence              122222221111          15678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHHH----h------h-----ccHHHHHHHHHHHHH
Q 046971          168 VSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS----A------F-----SGPCEFVKLSVASGV  225 (244)
Q Consensus       168 i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~----~------~-----~~~~~~lkig~P~~~  225 (244)
                      ++++++++|+++       +++|+.|+|+||.+++++.+++..+++.+    .      +     ..+|+++|+|.|.++
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~  243 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML  243 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence            999999999998       58999999999999999988776555431    0      1     125788999999999


Q ss_pred             HHHHHHHHH
Q 046971          226 MLCFSVQKI  234 (244)
Q Consensus       226 ~~~~e~~~~  234 (244)
                      +.+.+..++
T Consensus       244 ~~~~~~~~~  252 (441)
T PRK10367        244 RSLLLQLCF  252 (441)
T ss_pred             HHHHHHHHH
Confidence            888776553

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.93  E-value=1.1e-24  Score=204.46  Aligned_cols=207  Identities=32%  Similarity=0.449  Sum_probs=186.3

Q ss_pred             CchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHH----------
Q 046971           30 SDQSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLLVIL----------   99 (244)
Q Consensus        30 ~~~~~~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~~~~i~~G~----------   99 (244)
                      +..+.++..++|.|++++++.|+++..+.+++.+++++.|+||+|+.++|+.++++...|.+++++..|+          
T Consensus        15 ~~~~~~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQ   94 (473)
T KOG1347|consen   15 PVNPFFSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQ   94 (473)
T ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHh
Confidence            3334555669999999999999999999999999999999999999999999999999998888887766          


Q ss_pred             ----------HHHHHHHHHHHHH---------HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 046971          100 ----------FLSVNRSFVISLI---------NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQL  160 (244)
Q Consensus       100 ----------~~~~~~~~~~~~~---------~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G  160 (244)
                                +.+++|+..+...         .+.++++..+++|+++...+..|.++.+|.++.......+++++|+|+
T Consensus        95 a~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~  174 (473)
T KOG1347|consen   95 AFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQS  174 (473)
T ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhcc
Confidence                      5677776554331         778999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH------------HhhccHHHHHHHHH
Q 046971          161 KTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA------------SAFSGPCEFVKLSV  221 (244)
Q Consensus       161 ~~~~~m~i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~------------~~~~~~~~~lkig~  221 (244)
                      ++.+..+++..+.++|+++       +++|..|++++..++++........|+.            ..++++++++|.++
T Consensus       175 ~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai  254 (473)
T KOG1347|consen  175 ITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAI  254 (473)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhh
Confidence            9999999999999999998       7899999999999999999998887765            12788999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 046971          222 ASGVMLCFSVQKIYQ  236 (244)
Q Consensus       222 P~~~~~~~e~~~~~~  236 (244)
                      |+++|.|.|||.+..
T Consensus       255 ~s~~miclE~w~~ei  269 (473)
T KOG1347|consen  255 PSAVMICLEWWAYEI  269 (473)
T ss_pred             cchheeHHHHHHHHH
Confidence            999999999998754

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.93  E-value=2.3e-23  Score=196.23  Aligned_cols=192  Identities=11%  Similarity=0.115  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------------HH
Q 046971           41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL----------------FL  101 (244)
Q Consensus        41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~----------------~~  101 (244)
                      ..|+++|+++|..++++.+++++++|+.++|++|++++||++++.++.++   ...++..|.                +.
T Consensus        27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~  106 (478)
T PRK10189         27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA  106 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            48999999999999999999999999999999999999999999998775   222333332                12


Q ss_pred             HHHHHHHH----------HHHHhHHHHHHHcC--CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971          102 SVNRSFVI----------SLINWKMLVLKLLG--QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS  169 (244)
Q Consensus       102 ~~~~~~~~----------~~~~~~~~il~~fg--~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~  169 (244)
                      ..+++..+          ...+++++++.+++  .|+|+.+.+.+|+++..++.|+..+..++++++||.||++.||+++
T Consensus       107 ~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~  186 (478)
T PRK10189        107 AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLIN  186 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHH
Confidence            22222111          11267889999994  7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H--------------hhccHHHHHHHHH
Q 046971          170 LASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S--------------AFSGPCEFVKLSV  221 (244)
Q Consensus       170 li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~--------------~~~~~~~~lkig~  221 (244)
                      +++.++|+++           |++|+.|+|+|+.+++++.+++..+++.   .              .++.+|+++|+|+
T Consensus       187 ~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~  266 (478)
T PRK10189        187 GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGI  266 (478)
T ss_pred             HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhc
Confidence            9998988887           4799999999999999998876654432   0              1134689999999


Q ss_pred             HHHHHHHHHHH
Q 046971          222 ASGVMLCFSVQ  232 (244)
Q Consensus       222 P~~~~~~~e~~  232 (244)
                      |++++...+-.
T Consensus       267 P~~~~~~~~~~  277 (478)
T PRK10189        267 PASIESVLFNG  277 (478)
T ss_pred             cHHHHHHHHHH
Confidence            99997666554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.91  E-value=2.9e-22  Score=187.28  Aligned_cols=195  Identities=17%  Similarity=0.163  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHHH---HHHHHHHH---------------
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVAL---NYGLLVIL---------------   99 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~~---~~~i~~G~---------------   99 (244)
                      ++..|+++++++|..++++.+.+++++|+.++||+ |++++||++++.++.++.   .++++.|.               
T Consensus         8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   87 (453)
T PRK09575          8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK   87 (453)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence            45779999999999999999999999999999996 999999999999987741   12222222               


Q ss_pred             -HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 046971          100 -FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWV  168 (244)
Q Consensus       100 -~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i  168 (244)
                       +...++...+          ....++++++.+++.|+|+.+.+.+|+++..++.|+..+...+..++|+.||++.|+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  167 (453)
T PRK09575         88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence             1222222111          11177899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH----------H----hhccHHHHHHHHHHHHHHH
Q 046971          169 SLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA----------S----AFSGPCEFVKLSVASGVML  227 (244)
Q Consensus       169 ~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~----------~----~~~~~~~~lkig~P~~~~~  227 (244)
                      ++++.++|+++       +++|+.|+++|+.+++++..++..++++          +    .++.+|+++|+|+|++++.
T Consensus       168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~  247 (453)
T PRK09575        168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY  247 (453)
T ss_pred             HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence            99999999888       5799999999999999999887766553          0    1133689999999999988


Q ss_pred             HHHHHH
Q 046971          228 CFSVQK  233 (244)
Q Consensus       228 ~~e~~~  233 (244)
                      ..+...
T Consensus       248 ~~~~~~  253 (453)
T PRK09575        248 LYGSFV  253 (453)
T ss_pred             HHHHHH
Confidence            776554

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.90  E-value=1.2e-21  Score=182.66  Aligned_cols=199  Identities=22%  Similarity=0.345  Sum_probs=162.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH-------------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL-------------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~-------------   99 (244)
                      ++.++..|+++|+++|..++++.+.+.+.+|+.++|++|++++||++++.++.+.   +..++..|.             
T Consensus         5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~   84 (456)
T PRK01766          5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR   84 (456)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            4568889999999999999999999999999999999999999999999887653   122333332             


Q ss_pred             ---HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971          100 ---FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA  166 (244)
Q Consensus       100 ---~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m  166 (244)
                         .....++..+          ....++++++++++.|+|+.+.+.+|+++..++.|+..+..++++++|+.||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (456)
T PRK01766         85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM  164 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence               1111111111          111667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H-------------hhccHHHHHHH
Q 046971          167 WVSLASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S-------------AFSGPCEFVKL  219 (244)
Q Consensus       167 ~i~li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~-------------~~~~~~~~lki  219 (244)
                      +.++++.++|+++           |++|+.|+++|+.+++++..++..++++   +             .++.+|+++++
T Consensus       165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l  244 (456)
T PRK01766        165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL  244 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence            9999999999887           3689999999999999999887766553   1             11346899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 046971          220 SVASGVMLCFSVQKI  234 (244)
Q Consensus       220 g~P~~~~~~~e~~~~  234 (244)
                      |+|.+++.+.|...+
T Consensus       245 ~~P~~~~~~~~~~~~  259 (456)
T PRK01766        245 GLPIGLAIFFEVSLF  259 (456)
T ss_pred             cchHHHHHHHHHHHH
Confidence            999999988886543

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.80  E-value=1.6e-17  Score=156.00  Aligned_cols=172  Identities=15%  Similarity=0.065  Sum_probs=142.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH-------------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL-------------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~-------------   99 (244)
                      +..++..|+++|+++|..++++.+.....+|+.+++++|++++||.+++.++.++   +..++..|.             
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~  308 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL  308 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            3467789999999999999999999999999999999999999999999998775   233333333             


Q ss_pred             ---HHHHHHHHH----------HHHHHhHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 046971          100 ---FLSVNRSFV----------ISLINWKMLVLKLLGQ--PD---DVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLK  161 (244)
Q Consensus       100 ---~~~~~~~~~----------~~~~~~~~~il~~fg~--~~---~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~  161 (244)
                         ......+..          +....++++++++|..  ++   |+.+.+..|+++..++.++..++.++.+++||.||
T Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~  388 (464)
T PRK00187        309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD  388 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence               111111111          1122788999999953  44   78999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          162 TKVIAWVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       162 ~~~~m~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      ++.++++++++. ++|+|+       +++|+.|+|+++.+++++..+.....++
T Consensus       389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~  442 (464)
T PRK00187        389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE  442 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 899988       5799999999999999998877765554

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.79  E-value=2.2e-17  Score=154.00  Aligned_cols=172  Identities=18%  Similarity=0.169  Sum_probs=144.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH-------------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL-------------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~-------------   99 (244)
                      +..++..|+++++++|..++++.+...+.++..+++++|++++||.+++.++.++.   ..++..|.             
T Consensus       232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~  311 (456)
T PRK01766        232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRT  311 (456)
T ss_pred             CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            34678899999999999999999999999999999999999999999999988752   22332222             


Q ss_pred             ---HHHHHHHHH----------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971          100 ---FLSVNRSFV----------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA  166 (244)
Q Consensus       100 ---~~~~~~~~~----------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m  166 (244)
                         ......+..          +....+++++.++|++|+|+.+.+..|+++..++.++..++.++++++||.||++.++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence               111111111          1122789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          167 WVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       167 ~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      .+++++. ++++|+       +++|+.|+|+++.+++++..++..++++
T Consensus       392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~  440 (456)
T PRK01766        392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR  440 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 688886       5799999999999999999998776664

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.76  E-value=1.5e-16  Score=149.20  Aligned_cols=175  Identities=17%  Similarity=0.158  Sum_probs=148.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------
Q 046971           33 SLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL----------   99 (244)
Q Consensus        33 ~~~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~----------   99 (244)
                      +..+.+++..|+++|+++|..++++.......+.+.+++++|++++||.+++.++.++   +.+|+..+.          
T Consensus       231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga  310 (455)
T COG0534         231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA  310 (455)
T ss_pred             hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4467888999999999999999999999999999999999999999999999999886   233443333          


Q ss_pred             ------HHHHHHH----------HHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971          100 ------FLSVNRS----------FVISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK  163 (244)
Q Consensus       100 ------~~~~~~~----------~~~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~  163 (244)
                            .......          ..+....+++++.++|.+|+|+.+.+.+|+++..+..++...+.+..+++||.||+|
T Consensus       311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~  390 (455)
T COG0534         311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK  390 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence                  0111111          111222899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHH-----hc-CCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          164 VIAWVSLASL-LVHIFV-----MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       164 ~~m~i~li~~-vv~i~l-----~~-lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      .|+++++++. .+.+|+     .. +|..|.|++...++.+..++..++++
T Consensus       391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~  441 (455)
T COG0534         391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLR  441 (455)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988 567887     33 99999999999999999998887775

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.75  E-value=2.6e-16  Score=147.23  Aligned_cols=172  Identities=12%  Similarity=0.104  Sum_probs=141.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hHHHHHHHHHHHHHH---HHHHHHHHH------------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGD-LELAAISIANNVVVA---LNYGLLVIL------------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~-~alAa~~l~~~i~~~---~~~~i~~G~------------   99 (244)
                      +..++..|+++|+++|..+++........+...+++++|+ +++|+++++.++.++   +.+++..|.            
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~  306 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ  306 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence            4567889999999999999999999999999999999996 589999999998775   223333333            


Q ss_pred             ----HHHHHHHHH----------HHHHHhHHHHHHHcCC-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 046971          100 ----FLSVNRSFV----------ISLINWKMLVLKLLGQ-PDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKV  164 (244)
Q Consensus       100 ----~~~~~~~~~----------~~~~~~~~~il~~fg~-~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~  164 (244)
                          ......++.          +....++++++++|+. |||+.+.+.+|+++..+++|+..+..++++++||.||++.
T Consensus       307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~  386 (453)
T PRK09575        307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK  386 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence                111111111          1122789999999995 7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          165 IAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       165 ~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      +|.+++.+.++++|+     +.+|+.|+|+++.+++++..++..++++
T Consensus       387 ~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~  434 (453)
T PRK09575        387 ALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW  434 (453)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence            999999888889987     3489999999999999998887766554

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.74  E-value=6e-16  Score=145.93  Aligned_cols=172  Identities=14%  Similarity=0.098  Sum_probs=143.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH-------------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL-------------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~-------------   99 (244)
                      +..++..|+++|+++|..++++......++.+.+++++|++++||.+++.++.++.   .+++..+.             
T Consensus       252 ~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        252 PLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             cCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            34678999999999999999999999999999999999999999999999988752   23333322             


Q ss_pred             ---HHHHHHH----H------HHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971          100 ---FLSVNRS----F------VISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA  166 (244)
Q Consensus       100 ---~~~~~~~----~------~~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m  166 (244)
                         ......+    .      .+..+.+++++.++|.+|+|+.+.+..++++.++..|+..+..+..+.+||.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence               0001111    1      11122789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          167 WVSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       167 ~i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      ++++++. ++.+|+       +++|+.|.|++..+++.+..++..++++
T Consensus       412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~  460 (478)
T PRK10189        412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV  460 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987 677777       4789999999999999999887766664

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.69  E-value=1.6e-14  Score=129.11  Aligned_cols=184  Identities=24%  Similarity=0.376  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH----------------HHHHHHHHHH--
Q 046971           51 PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL----------------FLSVNRSFVI--  109 (244)
Q Consensus        51 P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~----------------~~~~~~~~~~--  109 (244)
                      |..++++...+.+.+|+.+++++|++++++++++.++.++.   ..++..|.                .........+  
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999998877641   22333333                1111111111  


Q ss_pred             --------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH--
Q 046971          110 --------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV--  179 (244)
Q Consensus       110 --------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l--  179 (244)
                              ....+++++..+++.|++..+.+.+|+++..++.++..+...+++++|+.||++.++..++++.++++++  
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~  160 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY  160 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence                    1127789999999988999999999999999999999999999999999999999999999998888776  


Q ss_pred             ---h-c---CCchHHHHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHHHHHHHHHHH
Q 046971          180 ---M-Q---LGLIRTAVTSNFSWWVLVFGMFGYVAS--------------AFSGPCEFVKLSVASGVMLCFSVQKI  234 (244)
Q Consensus       180 ---~-~---lGv~Gaa~A~~is~~~~~ll~~~~~~~--------------~~~~~~~~lkig~P~~~~~~~e~~~~  234 (244)
                         . .   +|+.|+++++.+++.+.+++..++.++              .++.+|++++.|.|.......++...
T Consensus       161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~  236 (342)
T TIGR00797       161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSF  236 (342)
T ss_pred             HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHH
Confidence               3 3   559999999999999988877655431              12457999999999999888777543

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.65  E-value=6.8e-14  Score=130.73  Aligned_cols=168  Identities=9%  Similarity=0.004  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH----------------
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL----------------   99 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~----------------   99 (244)
                      ++..|+++|++.|..++++.......+.+.+++++|++++||++++.++.++   +.+|+..|.                
T Consensus       228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            4578999999999999999999999999999999999999999999999875   223333332                


Q ss_pred             HHHHHHH----HH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHhcCChhHH
Q 046971          100 FLSVNRS----FV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQ----FPLQTFLQSQLKTKVI  165 (244)
Q Consensus       100 ~~~~~~~----~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~----~~~~~~lra~G~~~~~  165 (244)
                      .....+.    ..      +....+++++..+|++|+|+.+.+..|+++..+..+.....    ..+++.+||. |++.|
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~  386 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNS  386 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHH
Confidence            0111111    11      11227899999999999999999999999987653322233    3455556665 79999


Q ss_pred             HHHHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          166 AWVSLASLLV-HIFVMQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       166 m~i~li~~vv-~i~l~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      |++++++..+ -++++++|+.|+|++..+++.+..++...+++
T Consensus       387 ~~~~~~~~~~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~  429 (441)
T PRK10367        387 MAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR  429 (441)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998754 23337899999999999999999988876665

>TIGR01695 mviN integral membrane protein MviN

Probab=99.64  E-value=1e-13  Score=130.28  Aligned_cols=195  Identities=17%  Similarity=0.145  Sum_probs=152.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH--------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL--------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~--------------   99 (244)
                      .++..|+++|+++|..++++.......+|+.+.+++|+.++++++.+.++.++.    ..++..++              
T Consensus       218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~  297 (502)
T TIGR01695       218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN  297 (502)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            456789999999999999999999999999998888999999999999887652    12222222              


Q ss_pred             --HHHHHHH----HHH------HHHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971          100 --FLSVNRS----FVI------SLINWKMLVLKLLGQ----PDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK  163 (244)
Q Consensus       100 --~~~~~~~----~~~------~~~~~~~~il~~fg~----~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~  163 (244)
                        .....+.    ..+      ....+++++.+++.+    |+|..+.+..++++.+++.++..+...+.+.+++.||++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~  377 (502)
T TIGR01695       298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR  377 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence              1111111    111      112788999888754    567888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHH
Q 046971          164 VIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA------FSGPCEFVKLSVASGVMLCFSVQ  232 (244)
Q Consensus       164 ~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~------~~~~~~~lkig~P~~~~~~~e~~  232 (244)
                      .+++.++++.++|+++     +.+|+.|+|+|+.+++.+..++..+++++.      .+..+.+.|.-+++.+|...-++
T Consensus       378 ~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~m~~~~~~  457 (502)
T TIGR01695       378 TPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYL  457 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999889887     678999999999999999988877666532      22345677777777777666543

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.52  E-value=7.2e-12  Score=117.74  Aligned_cols=187  Identities=12%  Similarity=0.071  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHH-HHHHHHHHHHHHH-HH----HHHHHH---------HH-----HH
Q 046971           45 LWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLEL-AAISIANNVVVAL-NY----GLLVIL---------FL-----SV  103 (244)
Q Consensus        45 ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~al-Aa~~l~~~i~~~~-~~----~i~~G~---------~~-----~~  103 (244)
                      +.|-+.=..++++.+...+++|..+++| +|++++ ++++++.++.+.. ..    ++..+.         ..     ..
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~   81 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAF   81 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3455666788899999999999999999 799999 7999999887542 11    122222         11     11


Q ss_pred             HHHHHH-----------HHHHhHHHHHHHc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 046971          104 NRSFVI-----------SLINWKMLVLKLL--GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSL  170 (244)
Q Consensus       104 ~~~~~~-----------~~~~~~~~il~~f--g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~l  170 (244)
                      ......           ...++++++..++  |.|+|..+.+.+|+++..++.|+..+...+++++|+.||.+.+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i  161 (502)
T TIGR01695        82 ANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPI  161 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHH
Confidence            111110           0115678888887  568888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-----hcCCchHHH--HHHHHHHHHHHHHHHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHH
Q 046971          171 ASLLVHIFV-----MQLGLIRTA--VTSNFSWWVLVFGMFGYVAS-----------AFSGPCEFVKLSVASGVMLCFSV  231 (244)
Q Consensus       171 i~~vv~i~l-----~~lGv~Gaa--~A~~is~~~~~ll~~~~~~~-----------~~~~~~~~lkig~P~~~~~~~e~  231 (244)
                      +.++++++.     +++|..|++  +++.+++.+..++...++++           ..+.+|+++|.|.|..+....+.
T Consensus       162 ~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~  240 (502)
T TIGR01695       162 LFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQ  240 (502)
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            998877654     788999988  99999999988877655431           12457999999999998766554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.49  E-value=4.1e-14  Score=113.33  Aligned_cols=129  Identities=26%  Similarity=0.376  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH----------------HHHHHHHHH---
Q 046971           51 PTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL----------------FLSVNRSFV---  108 (244)
Q Consensus        51 P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~----------------~~~~~~~~~---  108 (244)
                      |..++++.+.+.+.+|+.+++++|++++|+++++.++.++.   ..++..|.                ....++...   
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            89999999999999999999999999999999999998852   23333343                111111111   


Q ss_pred             -------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 046971          109 -------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASL-LVHIFV  179 (244)
Q Consensus       109 -------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~-vv~i~l  179 (244)
                             +....++++++.+|+.|+|+.+.+.+|+++..++.|+..+..++++++||.||++.+++.++++. ++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence                   11227889999999999999999999999999999999999999999999999999999999999 899986

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.47  E-value=6.3e-11  Score=111.14  Aligned_cols=196  Identities=16%  Similarity=0.172  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH--------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL--------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~--------------   99 (244)
                      ..+..|+++|...|..++........++|+.+.+.+++-++++..-+.++.++.    +.++....              
T Consensus       193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~  272 (451)
T PF03023_consen  193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE  272 (451)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            345689999999999999999999999999999999999999999999998863    11222211              


Q ss_pred             --HHHHHHHHH----H------HHHHhHHHHHHHc---C-CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971          100 --FLSVNRSFV----I------SLINWKMLVLKLL---G-QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK  163 (244)
Q Consensus       100 --~~~~~~~~~----~------~~~~~~~~il~~f---g-~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~  163 (244)
                        .....+.+.    +      .+..+++++.+++   | -++|-.+....++++.++++|+..+...+.+.+.++||+|
T Consensus       273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~  352 (451)
T PF03023_consen  273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK  352 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence              111222211    1      1127788887764   2 3777788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHH-HHHHHHHHHHHHHHHHH
Q 046971          164 VIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA-----FSGPCE-FVKLSVASGVMLCFSVQ  232 (244)
Q Consensus       164 ~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~-----~~~~~~-~lkig~P~~~~~~~e~~  232 (244)
                      .|+.+++++.++|+++     +.+|..|.++|+.++.++.+++++.+.++.     .+.++. ..+.-.+++++...=+|
T Consensus       353 ~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (451)
T PF03023_consen  353 TPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGLFSFRKILLFLLKILLASALMAVILLL  432 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888     889999999999999999999888777533     233333 33345556655544444


Q ss_pred             H
Q 046971          233 K  233 (244)
Q Consensus       233 ~  233 (244)
                      .
T Consensus       433 ~  433 (451)
T PF03023_consen  433 L  433 (451)
T ss_pred             H
Confidence            3

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.38  E-value=3.8e-10  Score=105.59  Aligned_cols=180  Identities=17%  Similarity=0.129  Sum_probs=128.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C---hhHHHHHHH----HHHHHHHH---HHHHHHHH--
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL----G---DLELAAISI----ANNVVVAL---NYGLLVIL--   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l----G---~~alAa~~l----~~~i~~~~---~~~i~~G~--   99 (244)
                      +..++..|++++.++|..++++.....+.+|+.++|++    |   ..+.+.+|.    +.++.++.   ..++..+.  
T Consensus       218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p  297 (488)
T TIGR02900       218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVP  297 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999874    2   222333332    22333321   11222222  


Q ss_pred             --------------HHHHHHHH----HH------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046971          100 --------------FLSVNRSF----VI------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTF  155 (244)
Q Consensus       100 --------------~~~~~~~~----~~------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~  155 (244)
                                    .....+..    .+      .+..++++++.++..+++    +..|+++.+++.++..+.....+.
T Consensus       298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~  373 (488)
T TIGR02900       298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSI  373 (488)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          01111111    11      122778899888765543    678999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHHH-------hcCCchHHHHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHH
Q 046971          156 LQSQLKTKVIAWVSLASLLVHIFV-------MQLGLIRTAVTSNFSWWVLVFGMFGYVASAF---SGPCEFVKL  219 (244)
Q Consensus       156 lra~G~~~~~m~i~li~~vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~~---~~~~~~lki  219 (244)
                      +++.||+|.+++.++++.++|+++       |.+|+.|+|+|+.+++.+..++..++.++..   .+++++.+.
T Consensus       374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (488)
T TIGR02900       374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRITIDLSDFLIF  447 (488)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence            999999999999999999888886       5689999999999999999888877765222   235555543

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.29  E-value=1.3e-09  Score=102.12  Aligned_cols=182  Identities=12%  Similarity=0.071  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH----H------------HHHH
Q 046971           46 WHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL----F------------LSVN  104 (244)
Q Consensus        46 lki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~----~------------~~~~  104 (244)
                      +|-+.|..++++.+...+++|+.+++| +|+++.++++.+.++.++.    ..|+..+.    +            ....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            466899999999999999999999999 5999999999999877642    12333333    0            0001


Q ss_pred             HHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046971          105 RSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLL  174 (244)
Q Consensus       105 ~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~v  174 (244)
                      .+..+          ....+.+.+...++.+++.    ..|+++..+..|+..+...+++++|+.+|.+..+..++++.+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            11111          1114566666666666653    357788889999999999999999999999999999999887


Q ss_pred             HHHHH------------hcCCchHHHHHHHHHHHHHHHHHHHHHH---H---h----------hccHHHHHHHHHHHHHH
Q 046971          175 VHIFV------------MQLGLIRTAVTSNFSWWVLVFGMFGYVA---S---A----------FSGPCEFVKLSVASGVM  226 (244)
Q Consensus       175 v~i~l------------~~lGv~Gaa~A~~is~~~~~ll~~~~~~---~---~----------~~~~~~~lkig~P~~~~  226 (244)
                      +|+++            .+.|+.|+++++.+++++..++.+++++   +   +          ++.+|++++.|+|..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~  237 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS  237 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence            77554            2457889999999999998887655443   1   1          12468999999999987


Q ss_pred             HHHHH
Q 046971          227 LCFSV  231 (244)
Q Consensus       227 ~~~e~  231 (244)
                      ...+.
T Consensus       238 ~~~~~  242 (488)
T TIGR02900       238 RFIGS  242 (488)
T ss_pred             HHHHH
Confidence            66654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.28  E-value=5e-09  Score=99.25  Aligned_cols=201  Identities=17%  Similarity=0.223  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH----HHHHHHHH----------------
Q 046971           40 TESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL----NYGLLVIL----------------   99 (244)
Q Consensus        40 ~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~----~~~i~~G~----------------   99 (244)
                      +..|++++...|+.++.....+..++|+.+.+.+.+-+++...-+.++.++.    +.++..-+                
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            7889999999999999999999999999999999999999999999999863    22222222                


Q ss_pred             HHHHHHHH----HH------HHHHhHHHHHHHc---C-CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 046971          100 FLSVNRSF----VI------SLINWKMLVLKLL---G-QPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVI  165 (244)
Q Consensus       100 ~~~~~~~~----~~------~~~~~~~~il~~f---g-~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~  165 (244)
                      ...+++++    ++      .+..+++|+.+.+   | -+++-...+.+-++....++|+..+...+...+.+.+|+|+|
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP  388 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP  388 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence            11112211    11      1227888887764   3 356666678888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHH
Q 046971          166 AWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVASA--------FSGPCEFVKLSVASGVMLCFSVQ  232 (244)
Q Consensus       166 m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~~~--------~~~~~~~lkig~P~~~~~~~e~~  232 (244)
                      |.+++++.++|+.+     +.+|..|.+.|+.++-++++.++++..++.        +.... ..|+-+-++++...-|+
T Consensus       389 ~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l~~~i~~~~~~~  467 (518)
T COG0728         389 MKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLLASAIMAAALLA  467 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999888     778999999999999999888887776522        12223 67888888887777776


Q ss_pred             HHHHhhhhh
Q 046971          233 KIYQTSEKW  241 (244)
Q Consensus       233 ~~~~~~~~~  241 (244)
                      ....+...|
T Consensus       468 ~~~~~~~~~  476 (518)
T COG0728         468 LLHLAQREW  476 (518)
T ss_pred             HHHHHHHHH
Confidence            665555344

>PRK15099 O-antigen translocase; Provisional

Probab=99.26  E-value=2.8e-09  Score=98.44  Aligned_cols=169  Identities=9%  Similarity=0.008  Sum_probs=125.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHH----HHHHHHHHH-----------
Q 046971           36 RKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAG-HLGDLELAAISIANNVVVA----LNYGLLVIL-----------   99 (244)
Q Consensus        36 ~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg-~lG~~alAa~~l~~~i~~~----~~~~i~~G~-----------   99 (244)
                      +.+++..|+++++++|..++++.....+..|+.+++ ++|+++++.++.+.++.+.    ...++..+.           
T Consensus       208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~  287 (416)
T PRK15099        208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKR  287 (416)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence            346788899999999999999999999999999997 7999999999999998552    222233333           


Q ss_pred             --HHHHHHHHH----------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971          100 --FLSVNRSFV----------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW  167 (244)
Q Consensus       100 --~~~~~~~~~----------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~  167 (244)
                        .....+...          +...++++++.+++..++  .+.+.+++++..++.++......+...+-+.++++..+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~  365 (416)
T PRK15099        288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL  365 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011111110          111178899999887654  122567888877777776666666666667888888888


Q ss_pred             HHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHH
Q 046971          168 VSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYV  206 (244)
Q Consensus       168 i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~  206 (244)
                      ..+...++++++     |.+|..|+++|+.+++.+...+..+..
T Consensus       366 ~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~  409 (416)
T PRK15099        366 AEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVF  409 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888866     779999999999999999988776544

>PRK15099 O-antigen translocase; Provisional

Probab=99.20  E-value=6.7e-09  Score=95.86  Aligned_cols=175  Identities=9%  Similarity=-0.049  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH----
Q 046971           53 IFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVALNYGLLVIL------------------FLSVNRSFVI----  109 (244)
Q Consensus        53 ~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~~G~------------------~~~~~~~~~~----  109 (244)
                      ..+.......+++....++| +|+++.+.++...++.++.......|.                  ......+..+    
T Consensus        11 ~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~~~~   90 (416)
T PRK15099         11 AASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGF   90 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            34555555566666767777 699999998888887764322222232                  0111111111    


Q ss_pred             ------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH----
Q 046971          110 ------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV----  179 (244)
Q Consensus       110 ------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l----  179 (244)
                            ....+.+++...++.+++.    ..+..+..+..+...+...+.+.+|+.||++.++..++++.++|+.+    
T Consensus        91 ~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l~i~~  166 (416)
T PRK15099         91 STLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAAYYLC  166 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1126778888888777752    35566666666677888899999999999999999999999999866    


Q ss_pred             hc-CCchHHHHHHHHHHHHHHHHHHHHHH-H----------h--hccHHHHHHHHHHHHHHHHHHH
Q 046971          180 MQ-LGLIRTAVTSNFSWWVLVFGMFGYVA-S----------A--FSGPCEFVKLSVASGVMLCFSV  231 (244)
Q Consensus       180 ~~-lGv~Gaa~A~~is~~~~~ll~~~~~~-~----------~--~~~~~~~lkig~P~~~~~~~e~  231 (244)
                      .. .|+.|+++|+.+++.+..+...++++ +          .  ++.+|++++.|.|...+....+
T Consensus       167 ~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~  232 (416)
T PRK15099        167 YRLGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP  232 (416)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            23 39999999999999888765544332 0          1  2347999999999888766544

>PRK10459 colanic acid exporter; Provisional

Probab=99.18  E-value=1.4e-08  Score=95.65  Aligned_cols=166  Identities=13%  Similarity=0.045  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHH--HH--H--------------
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVALNYGLL--VI--L--------------   99 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~--~G--~--------------   99 (244)
                      ++..|++++.+.|...+++.....+-+|+.++|+ +|+++++.++.+.++.+.....+.  .+  .              
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~  282 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL  282 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence            5678999999999999999999999999999998 588899999999988764211111  11  1              


Q ss_pred             HHHHHHHH----H------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 046971          100 FLSVNRSF----V------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVS  169 (244)
Q Consensus       100 ~~~~~~~~----~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~  169 (244)
                      .....+..    .      +.+..+++++..++..++  ...+...+++..+...+..........+++.||+|.++..+
T Consensus       283 ~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~  360 (492)
T PRK10459        283 RVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWN  360 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHH
Confidence            11111111    1      112267888876654333  35577888999998888888899999999999999999999


Q ss_pred             HHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHH
Q 046971          170 LASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYV  206 (244)
Q Consensus       170 li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~  206 (244)
                      ++.+++++|.     +.+|+.|+++|+.+++.+......++.
T Consensus       361 ~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~  402 (492)
T PRK10459        361 VFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM  402 (492)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888886     567999999999999999888777666

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.79  E-value=2.6e-06  Score=79.79  Aligned_cols=153  Identities=21%  Similarity=0.253  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH---HHHHHHHH--------------
Q 046971           38 FWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL---NYGLLVIL--------------   99 (244)
Q Consensus        38 ~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~---~~~i~~G~--------------   99 (244)
                      .++..|++++.++|..++.....+.+-+|+.++|+ +|+++++-++.+.++....   ..++...+              
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~  287 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK  287 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            57899999999999999999999999999999998 4878888888666655531   11111111              


Q ss_pred             H--HHHHHH----HHH------HHHHhHHHHHHHc-CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971          100 F--LSVNRS----FVI------SLINWKMLVLKLL-GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA  166 (244)
Q Consensus       100 ~--~~~~~~----~~~------~~~~~~~~il~~f-g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m  166 (244)
                      .  ....+.    ..+      ....++++++..+ |.+.+   .+...+.+.+++.++..+.......+++.|+++..+
T Consensus       288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~---~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA---SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            0  111111    111      1127788887765 44332   177788888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----hcCCchHHHHHHHHH
Q 046971          167 WVSLASLLVHIFV-----MQLGLIRTAVTSNFS  194 (244)
Q Consensus       167 ~i~li~~vv~i~l-----~~lGv~Gaa~A~~is  194 (244)
                      ..+.++.++|+.+     +..|+.|++.++ .+
T Consensus       365 ~~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~  396 (480)
T COG2244         365 LISLISALLNLILNLLLIPRFGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhhHHHHH-HH
Confidence            9999888776666     888999999999 55

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.53  E-value=1.6e-06  Score=68.28  Aligned_cols=72  Identities=24%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          136 STWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-----MQLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-----~~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      +++..++.++..+.....+.+++.||+|.++..++++.++|+++     |.+|..|+++|+.+++.+...+..++.+
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~   78 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVR   78 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999888     8999999999999999999888877776

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.48  E-value=2.8e-06  Score=75.73  Aligned_cols=105  Identities=22%  Similarity=0.326  Sum_probs=80.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH------------
Q 046971           35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------   99 (244)
Q Consensus        35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------   99 (244)
                      .+..++..|+++|+++|..++++.......+|+.+++++|+.++++++++.++.++.   ..++..+.            
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  287 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD  287 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            345677899999999999999999999999999999999999999999999887642   22233332            


Q ss_pred             ----HHHHHHHHHH----------HHHHhHHHHHHHcCCChHHHHHHHHHHHHH
Q 046971          100 ----FLSVNRSFVI----------SLINWKMLVLKLLGQPDDVAELFGMVSTWL  139 (244)
Q Consensus       100 ----~~~~~~~~~~----------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~  139 (244)
                          .....++...          ....++++++++|++||++.+.+..|+.+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence                1111111111          112778999999999999999999998764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.24  E-value=0.00094  Score=62.81  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             HHhHHHHHHHc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----hcCC-
Q 046971          112 INWKMLVLKLL--GQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-----MQLG-  183 (244)
Q Consensus       112 ~~~~~~il~~f--g~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-----~~lG-  183 (244)
                      .++++++..++  |.|++..+.+.++++++.|..++..+...+.+++|++++-..|....++.++.-+..     ...| 
T Consensus        75 ~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~  154 (451)
T PF03023_consen   75 ILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQ  154 (451)
T ss_pred             HHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            37888888887  568899999999999999999999999999999999999999999998887655543     4567 


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHHHHH---------h--hccHHHHHHHHHHHHHHH
Q 046971          184 --LIRTAVTSNFSWWVLVFGMFGYVAS---------A--FSGPCEFVKLSVASGVML  227 (244)
Q Consensus       184 --v~Gaa~A~~is~~~~~ll~~~~~~~---------~--~~~~~~~lkig~P~~~~~  227 (244)
                        +.+.+++..++..+..++.+...++         .  .++.|+++|...|..+..
T Consensus       155 ~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  211 (451)
T PF03023_consen  155 ENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSS  211 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHH
Confidence              8889999999999999888777651         1  134789999999988743

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.89  E-value=0.012  Score=49.97  Aligned_cols=179  Identities=17%  Similarity=0.096  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH--------H--HHHHH----HHHH
Q 046971           49 VGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL--------F--LSVNR----SFVI  109 (244)
Q Consensus        49 ~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~--------~--~~~~~----~~~~  109 (244)
                      +.=...+++.....+++...++.| +|+++.+-++....+.++.    .+|+..+.        .  .....    ....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   84 (273)
T PF01943_consen    5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDKKELRSAYFSSVLFL   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333456666677777778888887 6998888888888776642    22332222        1  01110    1110


Q ss_pred             H----HH-HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-----
Q 046971          110 S----LI-NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV-----  179 (244)
Q Consensus       110 ~----~~-~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l-----  179 (244)
                      .    .+ .....+...++.++.    ...+........+..........++|+.++.+.....++...++...+     
T Consensus        85 ~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (273)
T PF01943_consen   85 LLIFSLIFLLILLIASFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLL  160 (273)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    01 222333234443332    222333222222567788889999999999999998888887666544     


Q ss_pred             -hcCCchHHHHHHHHHHHHHHHHHHHHHH---------HhhccHHHHHHHHHHHHHHHHHHH
Q 046971          180 -MQLGLIRTAVTSNFSWWVLVFGMFGYVA---------SAFSGPCEFVKLSVASGVMLCFSV  231 (244)
Q Consensus       180 -~~lGv~Gaa~A~~is~~~~~ll~~~~~~---------~~~~~~~~~lkig~P~~~~~~~e~  231 (244)
                       .+.++.+..++..++..+..++...+.+         ...+..|+++|.|.|........+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (273)
T PF01943_consen  161 FLGSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEILRFGLPLFLSSLLSW  222 (273)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence             3445788889999998888777766654         114578999999999998776654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=97.87  E-value=5.5e-05  Score=71.64  Aligned_cols=164  Identities=15%  Similarity=0.157  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHHH---HHHHHHHHH--------------
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGD--LELAAISIANNVVVA---LNYGLLVIL--------------   99 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~--~alAa~~l~~~i~~~---~~~~i~~G~--------------   99 (244)
                      .+..++++|+++|..+....+.-..-+-....|.+++  .++++.+++..+...   ...++..+.              
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            8889999999999999999998999999999999985  588998888876653   122333332              


Q ss_pred             --HH----HHHHHHH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 046971          100 --FL----SVNRSFV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAW  167 (244)
Q Consensus       100 --~~----~~~~~~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~  167 (244)
                        +.    ....+..      ...+..++.+-..|+.|+|+.+...+-.....++........+.++..||.|..+...+
T Consensus       323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~  402 (473)
T KOG1347|consen  323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV  402 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence              00    0000111      11226778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHH-------hcCCchHHHHHHHHHHHHHHHHH
Q 046971          168 VSLASL-LVHIFV-------MQLGLIRTAVTSNFSWWVLVFGM  202 (244)
Q Consensus       168 i~li~~-vv~i~l-------~~lGv~Gaa~A~~is~~~~~ll~  202 (244)
                      +++.+. ++-+|.       .++|+.|.|.+...+..+....+
T Consensus       403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l  445 (473)
T KOG1347|consen  403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVL  445 (473)
T ss_pred             EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHH
Confidence            998887 666776       67899999999999854444443

>PRK10459 colanic acid exporter; Provisional

Probab=97.87  E-value=0.0054  Score=57.71  Aligned_cols=173  Identities=9%  Similarity=0.092  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHH--------HH--
Q 046971           52 TIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL-------FLSVNRSF--------VI--  109 (244)
Q Consensus        52 ~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~-------~~~~~~~~--------~~--  109 (244)
                      ..+++......+++....++| +|+++..-++.+..+.++.    .+|+..++       ........        .+  
T Consensus        14 ~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (492)
T PRK10459         14 TAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTLYWLNVGLGIVVFV   93 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            455666666667777777787 6999888888887776542    22333333       11111111        00  


Q ss_pred             HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH------hcCC
Q 046971          110 SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV------MQLG  183 (244)
Q Consensus       110 ~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l------~~lG  183 (244)
                      ....+.+++-.+++. |+    ...++++..+..++..+....++.+|+..+.+.....+++..++...+      .+.|
T Consensus        94 ~~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~~~~g  168 (492)
T PRK10459         94 LVFLLSPLIADFYHN-PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAFFWPG  168 (492)
T ss_pred             HHHHHHHHHHHHcCC-hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            111334555455543 43    234667777777778888889999999999998888777776544433      6788


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH----H----hhccHHHHHHHHHHHHHHHHH
Q 046971          184 LIRTAVTSNFSWWVLVFGMFGYVA----S----AFSGPCEFVKLSVASGVMLCF  229 (244)
Q Consensus       184 v~Gaa~A~~is~~~~~ll~~~~~~----~----~~~~~~~~lkig~P~~~~~~~  229 (244)
                      +.+..++..++..+..+......+    .    ..+.+|++++.|.|.......
T Consensus       169 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~  222 (492)
T PRK10459        169 ALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERII  222 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHHHHHHHhhhHHHHHHHHH
Confidence            989999999988877665433322    1    134578999999999875543

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.66  E-value=0.027  Score=47.45  Aligned_cols=166  Identities=13%  Similarity=0.118  Sum_probs=105.4

Q ss_pred             HHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH----HHH--HhHHHHH
Q 046971           62 LFVITQAFAGH-LGDLELAAISIANNVVVALNYGLLVIL---------------FLSVNRSFVI----SLI--NWKMLVL  119 (244)
Q Consensus        62 ~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~~~~i~~G~---------------~~~~~~~~~~----~~~--~~~~~il  119 (244)
                      .+++...+++| +|+++.+-++....+..+...-...|+               ..........    ...  .+...+.
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVRSAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA   82 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667778887 699999888888887765322112333               0111111111    111  2223333


Q ss_pred             HHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH------hcCCchHHHHHHHH
Q 046971          120 KLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIFV------MQLGLIRTAVTSNF  193 (244)
Q Consensus       120 ~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~~vv~i~l------~~lGv~Gaa~A~~i  193 (244)
                      .++++ ++    ...++....+..+...+....++.+|+.+|.+......+...++...+      .+.++.+..++..+
T Consensus        83 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (251)
T PF13440_consen   83 YFFGD-PE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFII  157 (251)
T ss_pred             HHhCC-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34443 22    335666677788888999999999999999999999988887666332      44577888888888


Q ss_pred             HHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHH
Q 046971          194 SWWVLVFGMFGYVASA-----FSGPCEFVKLSVASGVMLCFSVQ  232 (244)
Q Consensus       194 s~~~~~ll~~~~~~~~-----~~~~~~~lkig~P~~~~~~~e~~  232 (244)
                      +..+..+....+.+..     ..+.++..|.+.|........+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (251)
T PF13440_consen  158 SALLALLISFYLLRRKLRLSFKFSWRRLLKYGLPFSLSSLLSWL  201 (251)
T ss_pred             HHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            8887777665544311     12234578999999887776654

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=97.26  E-value=0.14  Score=46.11  Aligned_cols=189  Identities=17%  Similarity=0.107  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh---HHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHH---
Q 046971           41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDL---ELAAISIANNVVVALNYGLL-----VIL----FLSVNR---  105 (244)
Q Consensus        41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~---alAa~~l~~~i~~~~~~~i~-----~G~----~~~~~~---  105 (244)
                      ..+.+.+.-+|..++.....+.--+.+.-+++-.++   .+|++|++..+.-++ -+.+     .|+    +...++   
T Consensus         9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s~rsrr~~v   87 (345)
T PF07260_consen    9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNSKRSRRKAV   87 (345)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcchhhhHHHH
Confidence            456788999999999999988888888888875544   489999999876431 1111     122    100000   


Q ss_pred             -H-----HHHH----HH---HhHHHH-HHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046971          106 -S-----FVIS----LI---NWKMLV-LKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLA  171 (244)
Q Consensus       106 -~-----~~~~----~~---~~~~~i-l~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li  171 (244)
                       +     .++.    ++   -.+..+ -+.+|.+|++.+.+++-+.++.+.-++..+...+++.+-=+.++......++.
T Consensus        88 l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~  167 (345)
T PF07260_consen   88 LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIA  167 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHH
Confidence             1     1110    11   233443 36689999999999999999998888888999999888877787777777766


Q ss_pred             HHHHHHHH------hcC--------CchHHHHHHHHHHHHHHHHHHHHHH--H----h-------hccHHHHHHHHHHHH
Q 046971          172 SLLVHIFV------MQL--------GLIRTAVTSNFSWWVLVFGMFGYVA--S----A-------FSGPCEFVKLSVASG  224 (244)
Q Consensus       172 ~~vv~i~l------~~l--------Gv~Gaa~A~~is~~~~~ll~~~~~~--~----~-------~~~~~~~lkig~P~~  224 (244)
                      ..+..+++      .++        |+.| .++-...+.....+ .+|..  +    .       ...++++++...|-+
T Consensus       168 ~v~~qvV~v~~ll~~~l~~~~pllipil~-~y~g~~vr~t~v~L-Gy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~  245 (345)
T PF07260_consen  168 DVIAQVVLVAILLSMHLEPQDPLLIPILA-LYAGIAVRFTIVCL-GYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLA  245 (345)
T ss_pred             HHHHHHHHHHHHHccccCccccHHHHHHH-HHHHHHHHHHHHHH-HHHHHHhhhccccCCcccCCChhHHHHHHHHHHHH
Confidence            55444432      111        2211 11111222222222 22211  1    0       124789999999999


Q ss_pred             HHHHHHHH
Q 046971          225 VMLCFSVQ  232 (244)
Q Consensus       225 ~~~~~e~~  232 (244)
                      ......+.
T Consensus       246 ~~~~tq~~  253 (345)
T PF07260_consen  246 LVLATQRI  253 (345)
T ss_pred             HHHHHHHH
Confidence            87777664

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=96.81  E-value=0.52  Score=45.30  Aligned_cols=185  Identities=15%  Similarity=0.086  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh-HHHHHHHHHHHHHHH--HHH---HHHHH-------------
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDL-ELAAISIANNVVVAL--NYG---LLVIL-------------   99 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~-alAa~~l~~~i~~~~--~~~---i~~G~-------------   99 (244)
                      .+..|+.+..+.=..++.+.   +.+=|+.+..-+|+. .-.|+.+++++=|+.  .++   +..+.             
T Consensus         7 ~sllks~~~vs~~Tl~SRi~---G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~   83 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRIL---GFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE   83 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh
Confidence            44455555555555444443   444455555557875 456999999988852  111   11111             


Q ss_pred             ---HHHHHHHH--H--------HHHHHhHHHHH-HHcCCC--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 046971          100 ---FLSVNRSF--V--------ISLINWKMLVL-KLLGQP--DDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTK  163 (244)
Q Consensus       100 ---~~~~~~~~--~--------~~~~~~~~~il-~~fg~~--~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~  163 (244)
                         ....+...  .        ++..++++.+. ..++..  ++....+....+++.|.+++..+...+.+.+|+.++-.
T Consensus        84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~  163 (518)
T COG0728          84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFF  163 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeec
Confidence               00111000  0        11116677777 444443  44444688888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH----H-hc-C-CchHHHHHHHHHHHHHHHHHHHHHH---------Hhh--ccHHHHHHHHHHHHH
Q 046971          164 VIAWVSLASLLVHIF----V-MQ-L-GLIRTAVTSNFSWWVLVFGMFGYVA---------SAF--SGPCEFVKLSVASGV  225 (244)
Q Consensus       164 ~~m~i~li~~vv~i~----l-~~-l-Gv~Gaa~A~~is~~~~~ll~~~~~~---------~~~--~~~~~~lkig~P~~~  225 (244)
                      .|.+.-++-++.-|.    + +. . -..+.++++.++-+...++.+..++         +.+  .+.|++++.-.|+.+
T Consensus       164 ~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l  243 (518)
T COG0728         164 IPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALL  243 (518)
T ss_pred             hhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHH
Confidence            988887777654442    2 21 2 2457888899998888888887776         112  368899999988876


Q ss_pred             H
Q 046971          226 M  226 (244)
Q Consensus       226 ~  226 (244)
                      .
T Consensus       244 ~  244 (518)
T COG0728         244 G  244 (518)
T ss_pred             H
Confidence            3

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=96.30  E-value=0.75  Score=42.95  Aligned_cols=188  Identities=15%  Similarity=0.115  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH----HHHHHHHH-----------H-HHH
Q 046971           41 ESKKLWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVAL----NYGLLVIL-----------F-LSV  103 (244)
Q Consensus        41 ~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~~----~~~i~~G~-----------~-~~~  103 (244)
                      ..+++.|=+.=...+++.....+++....++| +|+++.+-++.+..+..+.    .+|+..+.           . ...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~   83 (480)
T COG2244           4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL   83 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence            34455555555666677777777777777777 6888887777777766542    22222332           0 011


Q ss_pred             HHH-HH----HHHH--HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHH--HH
Q 046971          104 NRS-FV----ISLI--NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLAS--LL  174 (244)
Q Consensus       104 ~~~-~~----~~~~--~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m~i~li~--~v  174 (244)
                      ... ..    ....  ...-.+.......   .+.....+++...+.+........++.+|+.++.+...+..+..  ..
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAYLLAPI---DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLL  160 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            111 11    1111  1111111111111   22344456677888888899999999999999999998884444  11


Q ss_pred             HHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHH--H--------Hh--hccHHHHHHHHHHHHHHHHHHH
Q 046971          175 VHIFV-MQLGLIRTAVTSNFSWWVLVFGMFGYV--A--------SA--FSGPCEFVKLSVASGVMLCFSV  231 (244)
Q Consensus       175 v~i~l-~~lGv~Gaa~A~~is~~~~~ll~~~~~--~--------~~--~~~~~~~lkig~P~~~~~~~e~  231 (244)
                      ..... ......+..++..++......+...+.  +        ..  ++.+++.++.|+|.........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~  230 (480)
T COG2244         161 AAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNF  230 (480)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHH
Confidence            11222 222344566666666666555544333  1        11  4578999999999988666554

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=93.69  E-value=0.43  Score=40.25  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHH
Q 046971           39 WTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHL-GDLELAAISIANNVVVA   90 (244)
Q Consensus        39 ~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~l-G~~alAa~~l~~~i~~~   90 (244)
                      ++..|+++|.+.|..++.+......-+|..+++++ |+++++-++++.++...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~  253 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASA  253 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999995 88899999999988764

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=88.82  E-value=24  Score=34.31  Aligned_cols=165  Identities=10%  Similarity=0.059  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cC-hhHHHHHHHHHHHHHHH---HHHHH-------HH-H-------H-
Q 046971           43 KKLWHIVGPTIFNRVASYSLFVITQAFAGH--LG-DLELAAISIANNVVVAL---NYGLL-------VI-L-------F-  100 (244)
Q Consensus        43 k~ilki~~P~~l~~l~~~~~~~vd~~~vg~--lG-~~alAa~~l~~~i~~~~---~~~i~-------~G-~-------~-  100 (244)
                      +++++++.....+.+.--+..=-|.+.+..  +. .++-+.+++++++-++.   .+...       +. .       . 
T Consensus       253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~  332 (549)
T PF04506_consen  253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK  332 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence            566666777777777766666678888887  53 44678888887766541   11111       11 0       0 


Q ss_pred             ----------HHHH---HH-HHHHH--H----HhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 046971          101 ----------LSVN---RS-FVISL--I----NWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQL  160 (244)
Q Consensus       101 ----------~~~~---~~-~~~~~--~----~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G  160 (244)
                                ..+.   +. ..+.+  +    .+++.++.+++.+.=....+.+-+++-...+|+++++-+.-++.++..
T Consensus       333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a  412 (549)
T PF04506_consen  333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA  412 (549)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence                      0000   11 11111  1    555667777654332223345555666678888999999999999998


Q ss_pred             ChhHHHHHHHHHHHHH-------HHH-h-cCCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          161 KTKVIAWVSLASLLVH-------IFV-M-QLGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       161 ~~~~~m~i~li~~vv~-------i~l-~-~lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      +++....-+-...+..       ..+ . ++|..|.-+|+++.-.+..+....+++
T Consensus       413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~  468 (549)
T PF04506_consen  413 SESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIR  468 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8877555444333222       223 4 589999999999999999988877765

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=87.67  E-value=4  Score=33.97  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHH
Q 046971           45 LWHIVGPTIFNRVASYSLFVITQAFAGH-LGDLELAAISIANNVVVA   90 (244)
Q Consensus        45 ilki~~P~~l~~l~~~~~~~vd~~~vg~-lG~~alAa~~l~~~i~~~   90 (244)
                      .+|.+.|..++.+.....+-+|.++++. +|+++++.++++.++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~  231 (251)
T PF13440_consen  185 LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASL  231 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999 899999999999988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 37/256 (14%), Positives = 85/256 (33%), Gaps = 61/256 (23%)

Query: 32  QSLTRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL 91
           ++   ++  E+  L  +  P +   VA   +  +    AG +  +++AA+SIA ++ +  
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60

Query: 92  NY-------------------------------GLLVILFLSVNRSFVISLINWKMLVLK 120
                                            GL++ L +SV    +I+++     +++
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSV---PIIAVLFQTQFIIR 117

Query: 121 LLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIAWVSLASLLVHIF-- 178
            +   + +A         +I    ++     L++F      TK    +    LL++I   
Sbjct: 118 FMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN 177

Query: 179 ---------VMQLGLIRTAVTSNFSWWVLVFGMFGYVA-----------SAFSGPC---- 214
                      +LG +   V +   +W+++  +  Y+              F  P     
Sbjct: 178 WIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237

Query: 215 -EFVKLSVASGVMLCF 229
               +L       L F
Sbjct: 238 IRLFRLGFPVAAALFF 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 56/220 (25%)

Query: 2   EKHATQYDFIVAAVTLEDLASTVPSQDDSDQSLTRKFWTESKKLWHIVGPTIF-----NR 56
           E     Y F+++ +  E      PS        TR +  +  +L++     +F     +R
Sbjct: 85  EVLRINYKFLMSPIKTEQRQ---PSMM------TRMYIEQRDRLYN--DNQVFAKYNVSR 133

Query: 57  VASYSLFVITQAFAGHLGDLELAAISIANNVVVALNYGLL----VILFLSVNRSFVISL- 111
           +  Y    + QA         L  +  A NV++    G+L      + L V  S+ +   
Sbjct: 134 LQPYL--KLRQA---------LLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCK 179

Query: 112 ----INWKMLVLKLLGQPDDVAE-----LFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKT 162
               I W  L LK    P+ V E     L+ +   W      S   +  + + +Q++L+ 
Sbjct: 180 MDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRR 236

Query: 163 KVIAWVSLASLLV--------HIFVMQLGLIRTAVTSNFS 194
            + +      LLV              L   +  +T+ F 
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFK 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.83
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.67

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.83  E-value=9.2e-20  Score=166.67  Aligned_cols=200  Identities=18%  Similarity=0.319  Sum_probs=164.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---HHHHHHHHH------------
Q 046971           35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVA---LNYGLLVIL------------   99 (244)
Q Consensus        35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~---~~~~i~~G~------------   99 (244)
                      .+..+++.|+++|.++|..++++...+.+++|+.++||+|++++++++++.++.++   ...++..|.            
T Consensus         4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567899999999999999999999999999999999999999999999998664   223333343            


Q ss_pred             ----HHHHHHHHHH---------HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 046971          100 ----FLSVNRSFVI---------SLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVIA  166 (244)
Q Consensus       100 ----~~~~~~~~~~---------~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~m  166 (244)
                          .........+         ....+.++++.+++.++++.+.+..|+++..++.++..+...+++++|+.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence                1222221111         112677888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----------hcCCchHHHHHHHHHHHHHHHHHHHHHHH----------------hhccHHHHHHH
Q 046971          167 WVSLASLLVHIFV-----------MQLGLIRTAVTSNFSWWVLVFGMFGYVAS----------------AFSGPCEFVKL  219 (244)
Q Consensus       167 ~i~li~~vv~i~l-----------~~lGv~Gaa~A~~is~~~~~ll~~~~~~~----------------~~~~~~~~lki  219 (244)
                      ..++++.++|+++           |++|+.|+++|+.+++++..++..+++++                .++.+|+++|.
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            9999999999887           26999999999999999999887766641                12457899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 046971          220 SVASGVMLCFSVQKI  234 (244)
Q Consensus       220 g~P~~~~~~~e~~~~  234 (244)
                      |+|..++.+.++...
T Consensus       244 ~~p~~~~~~~~~~~~  258 (460)
T 3mkt_A          244 GFPVAAALFFEVTLF  258 (460)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999888876543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.67  E-value=7.5e-16  Score=140.61  Aligned_cols=173  Identities=13%  Similarity=0.054  Sum_probs=142.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH---HHHHHHHH------------
Q 046971           35 TRKFWTESKKLWHIVGPTIFNRVASYSLFVITQAFAGHLGDLELAAISIANNVVVAL---NYGLLVIL------------   99 (244)
Q Consensus        35 ~~~~~~~~k~ilki~~P~~l~~l~~~~~~~vd~~~vg~lG~~alAa~~l~~~i~~~~---~~~i~~G~------------   99 (244)
                      .+..++..|+++|+++|..++++.......+|+.+++++|++++|+++++.++.++.   ..++..+.            
T Consensus       230 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~  309 (460)
T 3mkt_A          230 HKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQD  309 (460)
T ss_dssp             CSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            345567889999999999999999999999999999999999999999999998752   12222222            


Q ss_pred             ----HHHHHH----HHH------HHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 046971          100 ----FLSVNR----SFV------ISLINWKMLVLKLLGQPDDVAELFGMVSTWLIPLHFSFAFQFPLQTFLQSQLKTKVI  165 (244)
Q Consensus       100 ----~~~~~~----~~~------~~~~~~~~~il~~fg~~~~v~~~a~~Yl~~~~~~~~~~~~~~~~~~~lra~G~~~~~  165 (244)
                          .....+    ...      +.+..+++++..+|..|+++.+.+..++++..++.++..+...+.++++|.||++.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  389 (460)
T 3mkt_A          310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI  389 (460)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence                001111    111      122288999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHH-----hc-------CCchHHHHHHHHHHHHHHHHHHHHHH
Q 046971          166 AWVSLASL-LVHIFV-----MQ-------LGLIRTAVTSNFSWWVLVFGMFGYVA  207 (244)
Q Consensus       166 m~i~li~~-vv~i~l-----~~-------lGv~Gaa~A~~is~~~~~ll~~~~~~  207 (244)
                      +++++++. ++|+|+     +.       +|+.|+|+|+.+++.+..++..++++
T Consensus       390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~  444 (460)
T 3mkt_A          390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY  444 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988 899887     44       99999999999999998887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00