Citrus Sinensis ID: 047004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAVDSSSSCSPSSSVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGMM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEEccccccccHHHHHHHHHHHHcccccc
cccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEHHHEEHHHccccccccHHHHHHHHHHHccccccc
mgslpgfksmleveddwyvtgntslnnhqditfppnlgdpttdnlllnavdsssscspsssvfnnfdasqvhyflpqknsfSSFMNVVsnnnslehgfdlgemgfldtQATHAlnrgnggilngfndlsannqmnatnlcsdpqfgtnrtlqfpengsssftgfrgfdenngnslflnrskllrpletfpstgaqptLFQKRAALRKNlggneaslgvlgtqnsqllcgiesdkgkkeltednEKKRklsisddledvsvdgsglnydsddflennkveemgknggsISNAISTitggdqkgkkkglpakNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNelestppgsaltpstsfypltptppalhsrikdelcpsslpspngqparVEVRVREGRAVNihmfcsrrpglLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEqckegqdvhpEQIKAVLLDsagfhgmm
MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAVDSSSSCSPSSSVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETfpstgaqptLFQKRAALRKNLGGNEASlgvlgtqnsqllcgiesdkgkkeltednekkrklsisddledvsvdgsglnydsddflENNKVEEMGKNGGSISNAIStitggdqkgkkkglpaknlmaerrrrkklndrlymlrsvvpkiskmdrASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELcpsslpspngqparVEVRVREGRAVNihmfcsrrpglLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKegqdvhpeQIKAVLLDSAGFHGMM
MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAVDsssscspsssVFNNFDASQVHYFLPQKnsfssfmnvvsnnnsLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQParvevrvregravNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGMM
**********LEVEDDWYVTGNTSLNNHQDITF*****************************FNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLS*********************************************LFLNR*KLL********************************LGVLGT***QLLCG**********************************************************************************************DRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL*****************************************************VRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVH*EQIKAVLL*********
*****GFKSMLEVEDDWYVTGNT************NLGDPTTDNL*********************************************************************************************************************************************************************************************************************************************************************************RKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELL************************************************************RVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQ*******HPEQIKAVLLDSAGFHG**
MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAV**********SVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTIT**********LPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGMM
********S*LEVEDDWYVTG***LNNHQDITFPPNLGDPTTDNLLLNAV**********SVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNL**************************************************************************************************P*KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELES****************************************GQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFH***
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MGSLPGFKSMLEVEDDWYVTGNTSLNNHQDITFPPNLGDPTTDNLLLNAVDSSSSCSPSSSVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHALNRGNGGILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTGFRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLLCGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGSISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASIxxxxxxxxxxxxxxxxxxxxxxxxxPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSPNGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGMM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q9LSE2494 Transcription factor ICE1 yes no 0.879 0.884 0.511 1e-115
Q9LPW3450 Transcription factor SCRE no no 0.686 0.757 0.540 1e-101
Q9LSL1351 Transcription factor bHLH no no 0.364 0.515 0.427 6e-30
Q9LXA9315 Transcription factor bHLH no no 0.336 0.530 0.425 2e-27
Q9ZVX2571 Transcription factor ABOR no no 0.362 0.315 0.388 8e-26
O49687589 Transcription factor MYC4 no no 0.340 0.286 0.322 4e-14
Q2HIV9248 Transcription factor bHLH no no 0.432 0.866 0.311 5e-14
Q9LNJ5590 Transcription factor bHLH no no 0.185 0.155 0.419 1e-13
Q9FIP9592 Transcription factor ATR2 no no 0.344 0.288 0.308 2e-13
Q9ZPY8566 Transcription factor ABA- no no 0.116 0.102 0.586 3e-13
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function desciption
 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/510 (51%), Positives = 318/510 (62%), Gaps = 73/510 (14%)

Query: 7   FKSMLEVEDDWYVTGNTS------LNNHQDITFPPNLGDPTTDNLLLNAVDSSSSCSPSS 60
           FK MLE   DW+ +          L N  D  +         DNLLL     SSS    S
Sbjct: 39  FKPMLE--GDWFSSNQPHPQDLQMLQNQPDFRYFGGFPFNPNDNLLLQHSIDSSSSCSPS 96

Query: 61  SVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLG-EMGFLDTQATHALNRGNG 119
             F+  D SQ + FL   N+    +NV S+ N  ++ F+ G E GFL        N+ + 
Sbjct: 97  QAFS-LDPSQQNQFLSTNNNKGCLLNVPSSANPFDNAFEFGSESGFL--------NQIHA 147

Query: 120 GILNGFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSS------FTG---FRGFDEN 170
            I  GF  L+   Q+   +L S P F + R+L  PE+ +++      FT      GF   
Sbjct: 148 PISMGFGSLT---QLGNRDLSSVPDFLSARSLLAPESNNNNTMLCGGFTAPLELEGFGSP 204

Query: 171 NGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLG---GNEASLGVLGTQNSQLL 227
                  NR+K+L+PLE   S+GAQPTLFQKRAA+R++ G   GN  S G+         
Sbjct: 205 ANGGFVGNRAKVLKPLEVLASSGAQPTLFQKRAAMRQSSGSKMGNSESSGM--------- 255

Query: 228 CGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGS 287
                              R+ S   D+++  ++ SGLNY+SD+  E+ K  E       
Sbjct: 256 -------------------RRFSDDGDMDETGIEVSGLNYESDEINESGKAAE------- 289

Query: 288 ISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 347
                S   GG  KGKKKG+PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD
Sbjct: 290 -----SVQIGGGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 344

Query: 348 AIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSP 407
           AI+YLKELLQRINDLHNELESTPPGS    S+SF+PLTPTP  L  R+K+ELCPSSLPSP
Sbjct: 345 AIDYLKELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSP 404

Query: 408 NGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVF 467
            GQ ARVEVR+REGRAVNIHMFC RRPGLLL+TM+ALDNLGLD+QQAVISCFNGFA+DVF
Sbjct: 405 KGQQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVF 464

Query: 468 RAEQCKEGQDVHPEQIKAVLLDSAGFHGMM 497
           RAEQC+EGQ++ P+QIKAVL D+AG+ GM+
Sbjct: 465 RAEQCQEGQEILPDQIKAVLFDTAGYAGMI 494
Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1 Back     alignment and function description
>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
125863280558 inducer of CBF expression 1 [Populus tri 0.975 0.869 0.739 0.0
255540073549 Transcription factor ICE1, putative [Ric 0.975 0.883 0.733 0.0
302030865546 inducer of CBF expression 2 protein [Pop 0.955 0.869 0.725 0.0
224119802546 predicted protein [Populus trichocarpa] 0.955 0.869 0.723 0.0
224134144454 predicted protein [Populus trichocarpa] 0.897 0.982 0.718 0.0
325976998541 ICE-like protein [Corylus heterophylla] 0.975 0.896 0.725 0.0
152968456531 bHLH transcriptional factor [Malus x dom 0.981 0.919 0.709 0.0
399145795518 ICE1 [Camellia sinensis] 0.973 0.934 0.700 0.0
302398593531 BHLH domain class transcription factor [ 0.981 0.919 0.715 0.0
317016596518 inducer of CBF expression [Camellia sine 0.973 0.934 0.696 0.0
>gi|125863280|gb|ABN58427.1| inducer of CBF expression 1 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/519 (73%), Positives = 423/519 (81%), Gaps = 34/519 (6%)

Query: 1   MGSLPGFKSMLEVEDDWYVTGN--TSLNNHQD----ITFPPNLGDPTTDNLLLNAVDSSS 54
           MGSL  FKSMLEVED+WYV+ N  T    HQD    +TF P LGDP  DNLLL+ VDSSS
Sbjct: 52  MGSLSTFKSMLEVEDEWYVSNNNNTIHQTHQDSIKDLTFSPGLGDP--DNLLLHQVDSSS 109

Query: 55  SCSPSSSVFNNFDASQVHYFLPQKNSFSSFMNVVSNNNSLEHGFDLGEMGFLDTQATHAL 114
           SCSPSSSVFNN D SQVHYF+  K S SS +NVVSNN  LEHGFDL E+G+L+ Q T++ 
Sbjct: 110 SCSPSSSVFNNLDPSQVHYFMHPKPSLSSLLNVVSNN-PLEHGFDLSEIGYLENQGTNSA 168

Query: 115 NRGN-GGILN----------GFNDLSANNQMNATNLCSDPQFGTNRTLQFPENGSSSFTG 163
              N   +LN           F+DLS+N+Q++  NLCSDPQF ++R LQ PENG    T 
Sbjct: 169 ATANVSALLNRGGGVLGNLGNFSDLSSNSQISIPNLCSDPQFSSSRMLQLPENGPG-LTS 227

Query: 164 FRGFDENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQN 223
           FRGFDEN+GN LFLNRSKLLRPLET+PS GAQPTLFQKRAALRKNLG N  +LG      
Sbjct: 228 FRGFDENSGNQLFLNRSKLLRPLETYPSMGAQPTLFQKRAALRKNLGDNGGNLG------ 281

Query: 224 SQLLCGIESDKGKKELT---EDNEKKRKLSISDD-LEDVSVDGSGLNYDSDDFLENNKVE 279
             LL GI+ DKGK E+T   E+N+KKRK S  DD LEDVS+DGSGLNYDSD+F EN KVE
Sbjct: 282 --LLSGIDRDKGKSEMTQISEENDKKRKFSSGDDFLEDVSIDGSGLNYDSDEFTENTKVE 339

Query: 280 EMGKNGGSISNAISTITGG-DQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISK 338
           E+GKNGG  S A S +TGG DQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISK
Sbjct: 340 EIGKNGGISSKANSGVTGGVDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISK 399

Query: 339 MDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDE 398
           MDRASILGDAIEYLKELLQRINDLHNELESTPP S+LTP+TSF+PLTPTP AL SRI D+
Sbjct: 400 MDRASILGDAIEYLKELLQRINDLHNELESTPPSSSLTPTTSFHPLTPTPSALPSRIMDK 459

Query: 399 LCPSSLPSPNGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISC 458
           LCPSSLPSPN QPARVEVRVREGRAVNIHMFC R+PGLLLSTMRALDNLGLDIQQAVISC
Sbjct: 460 LCPSSLPSPNSQPARVEVRVREGRAVNIHMFCGRKPGLLLSTMRALDNLGLDIQQAVISC 519

Query: 459 FNGFAMDVFRAEQCKEGQDVHPEQIKAVLLDSAGFHGMM 497
           FNGFAMD+FR +QCKEGQD+HP+QIKAVLLDSAGFHGMM
Sbjct: 520 FNGFAMDIFRPQQCKEGQDMHPDQIKAVLLDSAGFHGMM 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540073|ref|XP_002511101.1| Transcription factor ICE1, putative [Ricinus communis] gi|223550216|gb|EEF51703.1| Transcription factor ICE1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302030865|gb|ADK91821.1| inducer of CBF expression 2 protein [Populus suaveolens] Back     alignment and taxonomy information
>gi|224119802|ref|XP_002318166.1| predicted protein [Populus trichocarpa] gi|222858839|gb|EEE96386.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224134144|ref|XP_002321747.1| predicted protein [Populus trichocarpa] gi|222868743|gb|EEF05874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|325976998|gb|ADZ48234.1| ICE-like protein [Corylus heterophylla] Back     alignment and taxonomy information
>gi|152968456|gb|ABS50251.1| bHLH transcriptional factor [Malus x domestica] Back     alignment and taxonomy information
>gi|399145795|gb|AFP25102.1| ICE1 [Camellia sinensis] Back     alignment and taxonomy information
>gi|302398593|gb|ADL36591.1| BHLH domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|317016596|gb|ACT90640.2| inducer of CBF expression [Camellia sinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2090847494 ICE1 "AT3G26744" [Arabidopsis 0.633 0.637 0.572 3.9e-89
UNIPROTKB|Q2R3F6524 Os11g0523700 "Helix-loop-helix 0.484 0.459 0.673 4.1e-81
TAIR|locus:2155725351 bHLH093 "AT5G65640" [Arabidops 0.370 0.524 0.428 2.3e-32
TAIR|locus:2142419315 AT5G10570 "AT5G10570" [Arabido 0.162 0.257 0.597 1.2e-30
UNIPROTKB|Q8H8E4430 OJ1006F06.1 "Putative bHLH tra 0.378 0.437 0.414 4.9e-30
UNIPROTKB|Q336V8380 Os10g0544200 "Os10g0544200 pro 0.406 0.531 0.414 6.2e-30
TAIR|locus:2039445571 AMS "AT2G16910" [Arabidopsis t 0.428 0.373 0.369 3.2e-22
UNIPROTKB|Q6YUS3552 OSJNBb0088N06.15 "BHLH protein 0.179 0.161 0.494 1.6e-14
UNIPROTKB|Q84LF9310 RERJ1 "Transcription Factor" [ 0.249 0.4 0.378 7.2e-13
TAIR|locus:2046198318 FRU "AT2G28160" [Arabidopsis t 0.225 0.352 0.379 1.5e-12
TAIR|locus:2090847 ICE1 "AT3G26744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 869 (311.0 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 189/330 (57%), Positives = 223/330 (67%)

Query:   168 DENNGNSLFLNRSKLLRPLETFPSTGAQPTLFQKRAALRKNLGGNEASLGVLGTQNSQLL 227
             + NN N++          LE F S  A       RA + K L    AS G   T   Q  
Sbjct:   180 ESNNNNTMLCGGFTAPLELEGFGSP-ANGGFVGNRAKVLKPLEVL-ASSGAQPTL-FQKR 236

Query:   228 CGIESDKGKKELTEDNEKKRKLSISDDLEDVSVDGSGLNYDSDDFLENNKVEEMGKNGGS 287
               +    G K    ++   R+ S   D+++  ++ SGLNY+SD+  E+ K  E  + GG 
Sbjct:   237 AAMRQSSGSKMGNSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGG- 295

Query:   288 ISNAISTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 347
                      GG  KGKKKG+PAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD
Sbjct:   296 ---------GG--KGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD 344

Query:   348 AIEYLKELLQRINDLHNELESTPPGSALTPSTSFYPLTPTPPALHSRIKDELCPSSLPSP 407
             AI+YLKELLQRINDLHNELESTPPGS    S+SF+PLTPTP  L  R+K+ELCPSSLPSP
Sbjct:   345 AIDYLKELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSP 404

Query:   408 NGQPXXXXXXXXXXXXXNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVF 467
              GQ              NIHMFC RRPGLLL+TM+ALDNLGLD+QQAVISCFNGFA+DVF
Sbjct:   405 KGQQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVF 464

Query:   468 RAEQCKEGQDVHPEQIKAVLLDSAGFHGMM 497
             RAEQC+EGQ++ P+QIKAVL D+AG+ GM+
Sbjct:   465 RAEQCQEGQEILPDQIKAVLFDTAGYAGMI 494
GO:0003677 "DNA binding" evidence=ISS;IDA;TAS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009409 "response to cold" evidence=IEP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA
GO:0050826 "response to freezing" evidence=RCA;IMP
GO:0010440 "stomatal lineage progression" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0009410 "response to xenobiotic stimulus" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0048522 "positive regulation of cellular process" evidence=RCA
UNIPROTKB|Q2R3F6 Os11g0523700 "Helix-loop-helix DNA-binding domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2155725 bHLH093 "AT5G65640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142419 AT5G10570 "AT5G10570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H8E4 OJ1006F06.1 "Putative bHLH transcription protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q336V8 Os10g0544200 "Os10g0544200 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039445 AMS "AT2G16910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YUS3 OSJNBb0088N06.15 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84LF9 RERJ1 "Transcription Factor" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2046198 FRU "AT2G28160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSE2ICE1_ARATHNo assigned EC number0.51170.87920.8846yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
smart0035353 smart00353, HLH, helix loop helix domain 1e-12
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 3e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 3e-09
cd0487370 cd04873, ACT_UUR-ACR-like, ACT domains of the bact 2e-07
cd0490073 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU 1e-06
cd0489572 cd04895, ACT_ACR_1, ACT domain-containing protein 0.001
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 313 MAERRRRKKLNDRLYMLRSVVP---KISKMDRASILGDAIEYLKELLQ 357
             ERRRR+K+N+    LRS++P   K  K+ +A IL  AIEY+K L +
Sbjct: 2   ARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQE 49

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.25
smart0035353 HLH helix loop helix domain. 99.21
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.21
KOG1318411 consensus Helix loop helix transcription factor EB 98.92
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.55
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.44
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.27
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.26
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.17
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.12
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 98.07
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.06
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.95
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.94
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.82
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.67
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.56
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.39
KOG0561 373 consensus bHLH transcription factor [Transcription 97.37
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.34
PRK05007884 PII uridylyl-transferase; Provisional 97.09
PLN0321793 transcription factor ATBS1; Provisional 97.01
KOG4029228 consensus Transcription factor HAND2/Transcription 96.97
PRK04374869 PII uridylyl-transferase; Provisional 96.9
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.87
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.78
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.77
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.69
PRK03059856 PII uridylyl-transferase; Provisional 96.67
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.57
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.53
PRK05092931 PII uridylyl-transferase; Provisional 96.42
PRK03381 774 PII uridylyl-transferase; Provisional 96.4
PRK03381774 PII uridylyl-transferase; Provisional 96.2
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 96.02
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.01
PRK0019490 hypothetical protein; Validated 95.82
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.76
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.58
KOG3910632 consensus Helix loop helix transcription factor [T 95.52
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.49
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 95.46
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 95.46
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 95.43
PRK05007 884 PII uridylyl-transferase; Provisional 95.41
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.4
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 95.17
PRK04374 869 PII uridylyl-transferase; Provisional 94.81
PRK05092 931 PII uridylyl-transferase; Provisional 94.75
PRK00275 895 glnD PII uridylyl-transferase; Provisional 94.7
PRK03059 856 PII uridylyl-transferase; Provisional 94.34
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 93.65
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.15
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 92.96
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 92.66
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 92.56
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 91.74
KOG4447173 consensus Transcription factor TWIST [Transcriptio 91.69
PRK04435147 hypothetical protein; Provisional 91.18
cd0211660 ACT ACT domains are commonly involved in specifica 91.08
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 90.08
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 89.72
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 89.63
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 89.4
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 89.24
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 89.16
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 89.11
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 88.89
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 88.67
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 88.14
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 87.5
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 87.44
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 87.3
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 86.79
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 86.73
PRK11589 190 gcvR glycine cleavage system transcriptional repre 86.58
PRK08577136 hypothetical protein; Provisional 86.46
KOG3898254 consensus Transcription factor NeuroD and related 85.83
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 85.48
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 84.55
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 83.64
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 83.52
PRK07334403 threonine dehydratase; Provisional 82.65
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 81.33
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 81.3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.25  E-value=6.1e-12  Score=97.39  Aligned_cols=52  Identities=37%  Similarity=0.671  Sum_probs=49.1

Q ss_pred             CccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCCccchHHHHHHHHHHHHHHH
Q 047004          308 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIEYLKELLQRI  359 (497)
Q Consensus       308 ~~~H~~~ERrRR~kin~~~~~LrsLVP~~---~K~dKasIL~eAI~YIk~Lq~~v  359 (497)
                      +..|+..||+||++||+.|..|+++||..   .|++|++||..||+||+.|+.++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999987   89999999999999999999875

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 5e-15
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-13
1hlo_A80 Protein (transcription factor MAX); transcriptiona 4e-12
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 5e-12
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 1e-09
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 3e-09
4f3l_A 361 Mclock, circadian locomoter output cycles protein 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 1e-04
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 5e-04
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 6e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 313 MAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLHNELES 368
             E+R R  +ND++  L+ +V    +K++++++L  AI+Y++ L      L  E  S
Sbjct: 12  AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.57
4ati_A118 MITF, microphthalmia-associated transcription fact 99.49
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.45
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.43
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.42
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.41
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.39
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.38
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.33
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.33
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.23
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.95
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.91
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.85
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.71
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.4
4ath_A83 MITF, microphthalmia-associated transcription fact 98.32
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.76
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.73
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.99
2nyi_A 195 Unknown protein; protein structure initiative, PSI 95.75
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 94.76
2nyi_A195 Unknown protein; protein structure initiative, PSI 94.51
1u8s_A192 Glycine cleavage system transcriptional repressor, 94.18
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 92.32
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 89.78
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 89.27
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 88.7
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 88.68
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 84.18
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 83.81
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.57  E-value=6.5e-16  Score=128.42  Aligned_cols=64  Identities=25%  Similarity=0.393  Sum_probs=59.7

Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 047004          307 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLHNELESTP  370 (497)
Q Consensus       307 ~~~~H~~~ERrRR~kin~~~~~LrsLVP~~-~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl~  370 (497)
                      ++..|+.+||+||++||+.|.+|+++||.. .|++|++||.+||+||++|+.+++.|+.+.+.+.
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999987 8999999999999999999999999999987664
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 4e-14
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 8e-14
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-13
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 4e-13
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 1e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 3e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 9e-12
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 4e-11
d2f06a171 d.58.18.11 (A:71-141) Hypothetical protein BT0572 8e-04
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 319 RKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLHNELES 368
           R  +ND++  L+ +V    +KM ++ +L  AI+Y+K L Q  + L  E   
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV 51
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.4
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.35
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.35
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.33
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.29
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.99
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.37
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.3
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 93.28
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 90.48
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 90.31
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.1e-14  Score=114.16  Aligned_cols=61  Identities=26%  Similarity=0.433  Sum_probs=57.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCCccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047004          309 AKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIEYLKELLQRINDLHNELEST  369 (497)
Q Consensus       309 ~~H~~~ERrRR~kin~~~~~LrsLVP~~-~K~dKasIL~eAI~YIk~Lq~~v~~L~~e~esl  369 (497)
                      ..|+.+||+||++||+.|..|++|||.. .|++|++||.+||+||+.|+.+++.|+.+.+.+
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999975 689999999999999999999999999887655
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure