Citrus Sinensis ID: 047013
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.952 | 0.982 | 0.405 | 1e-153 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.955 | 0.962 | 0.389 | 1e-142 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.883 | 0.943 | 0.388 | 1e-134 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.896 | 0.934 | 0.389 | 1e-127 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.407 | 0.394 | 0.301 | 2e-25 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.446 | 0.294 | 0.262 | 2e-11 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.446 | 0.295 | 0.262 | 8e-11 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.446 | 0.303 | 0.260 | 9e-11 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.445 | 0.297 | 0.259 | 2e-10 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.445 | 0.297 | 0.259 | 2e-10 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/786 (40%), Positives = 456/786 (58%), Gaps = 42/786 (5%)
Query: 3 LSNGFVLLLLFFILSLLQ----TPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEF 58
+S+ F+ FF+L L + + + + Y+V++ + P+S D+ H +
Sbjct: 1 MSSSFLSSTAFFLLLCLGFCHVSSSSSDQGTYIVHM---AKSQMPSSFDL------HSNW 51
Query: 59 LGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRS 118
S L S+ ++A L++ +Y I+GF L +E A + P V+SV E +LHTTR+
Sbjct: 52 YDSSLRSISDSAELLY-TYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRT 110
Query: 119 WEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQ 178
FLGL++ + +A DV++G LD+GVWPES+S++DEG GPIP W+G C+
Sbjct: 111 PLFLGLDEHTA----DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCE 166
Query: 179 NDTN-KAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGG 237
TN A CNRKLIG R+ + G + ++ S + + D +GHGTHT STA G
Sbjct: 167 AGTNFTASLCNRKLIGARFFARGYESTMGPIDES----KESRSPRDDDGHGTHTSSTAAG 222
Query: 238 SFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297
S V SL G GTA+G +P+AR+A YKVCW C ++DI+A D AI D V+++
Sbjct: 223 SVVEGASLLGYASGTARGMAPRARVAVYKVCWLGG----CFSSDILAAIDKAIADNVNVL 278
Query: 298 SASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTD 357
S SLG +++ VA+G+F AM GILV SAGN+GP+ ++ NV PW+ TVGA T D
Sbjct: 279 SMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLD 338
Query: 358 REFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLI-AGEAAKVANVSNEDATQCKNGTIDP 416
R+F + LGN G S+ + +L P I AG A+ N C GT+ P
Sbjct: 339 RDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATN-----GNLCMTGTLIP 393
Query: 417 EKVKGKILIC---YDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNY 473
EKVKGKI++C +A++ KG AG VGMILAN+ + + H LP V
Sbjct: 394 EKVKGKIVMCDRGINARV--QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGE 451
Query: 474 KDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533
K G + Y+ NP AS++ T S + + FS+RGPN I P ILKPD+IAPGV
Sbjct: 452 KAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGV 511
Query: 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593
+I+AA+T GP+ D RRV +N++SGTSM+CPHV+G+A L+K++HP+WSPAAI+SA+
Sbjct: 512 NILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSAL 571
Query: 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLG 653
MTTA P+LD TG+ +TPF +GAGHV+P +A +PGL+YDL DYL +LC L
Sbjct: 572 MTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALN 631
Query: 654 YNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKA 713
Y I ++ +S+AD NYPS AV G+ +R + +VG TY
Sbjct: 632 YTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGG-AGTYSV 690
Query: 714 QIT-EIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNV 772
++T E GV VEP LNF + E+ ++ +TF+V + KP ++ FG + WSDG H V
Sbjct: 691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVD-SSKPSGSNS-FGSIEWSDGKHVV 748
Query: 773 KSTIAV 778
S +A+
Sbjct: 749 GSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 309/794 (38%), Positives = 441/794 (55%), Gaps = 48/794 (6%)
Query: 9 LLLLFFILSLLQTPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEE 68
L + F+L + K+ Y+V L H ++ T+ H FL + VEE
Sbjct: 7 FLCIIFLLFCSSSSEILQKQTYIVQL----HPNSETAKTFASKFDWHLSFLQEAVLGVEE 62
Query: 69 A----AGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGL 124
+ + +SYG I GF A L E A+ + PEVV+V + + + TT S++FLGL
Sbjct: 63 EEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGL 122
Query: 125 EKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQN-DTNK 183
+ W+K+RFG+ IIG LD+GVWPES SF D GM IP +W+G CQ ++
Sbjct: 123 DGFGN---SGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFS 179
Query: 184 AITCNRKLIGIRYISEGLIESCRAMNS---SFLVPENLTTSIDHNGHGTHTLSTAGGSFV 240
+ +CNRKLIG R+ I R NS S +P ++ D GHGTHT ST GGS V
Sbjct: 180 SSSCNRKLIGARF----FIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSV 235
Query: 241 SNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300
S ++ G G G A+G +P A +A YKVCW N C ++DI+A DVAI D VD++S S
Sbjct: 236 SMANVLGNGAGVARGMAPGAHIAVYKVCW----FNGCYSSDILAAIDVAIQDKVDVLSLS 291
Query: 301 LGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREF 360
LG P ++ ++A+G+F AM GI V+ +AGN+GP E +V N PWV T+GA T DR F
Sbjct: 292 LGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRF 351
Query: 361 SSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQ--CKNGTIDPEK 418
+ V L N ++ G S+ + AG +V V+ D C G++ E+
Sbjct: 352 PAVVRLANGKLLYGESLYPGKGIKN------AGREVEVIYVTGGDKGSEFCLRGSLPREE 405
Query: 419 VKGKILICYDAKIGDA-KGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQ 477
++GK++IC G + KG+ +AG V MILAN+ +Q VH LP + Y +
Sbjct: 406 IRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESV 465
Query: 478 SVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537
+ AY+ T P A + T + + + FSARGP+L +P+ILKPD+IAPGV+IIA
Sbjct: 466 LLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIA 525
Query: 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597
A+ GP+ +D RRV + VMSGTSM+CPHV+GI L+++ +P+WSPAAIKSA+MTTA
Sbjct: 526 AWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTA 585
Query: 598 TTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQS 657
D I D + A FA GAGHVNP A++PGLVY++ P DY+ YLC LG+ +S
Sbjct: 586 DLYDRQGKAIKD--GNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRS 643
Query: 658 IIDLFTQPKEPFKCPGPFSIA---DFNYPSIAVPNLVNGSMT--VSRRLKNVGTPTCTYK 712
D+ + C G NYPSIAV G T ++RR+ NVG+P Y
Sbjct: 644 --DILAITHKNVSCNGILRKNPGFSLNYPSIAVI-FKRGKTTEMITRRVTNVGSPNSIYS 700
Query: 713 AQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDK--PVATDYVFGELVWSDG-- 768
+ G+ +V P L F + L++++ F +K ++ VA+ + G+L W +
Sbjct: 701 VNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVAS-FAQGQLTWVNSHN 759
Query: 769 -FHNVKSTIAVKLQ 781
V+S I+V L+
Sbjct: 760 LMQRVRSPISVTLK 773
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 295/759 (38%), Positives = 419/759 (55%), Gaps = 69/759 (9%)
Query: 27 KKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGA 86
K Y+VY+G D + A + H L +GS A + H+Y R NGF
Sbjct: 31 KNIYIVYMGRKLE-------DPDSAHLHHRAMLEQVVGSTF-APESVLHTYKRSFNGFAV 82
Query: 87 VLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVI 146
L EE A++IA VVSVFL E +LHTTRSW+FLG P + +++ +++
Sbjct: 83 KLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGF-------PLTVPRRSQVESNIV 135
Query: 147 IGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCR 206
+G LD+G+WPES SF DEG P P +W+GTC+ N CNRK+IG R G S
Sbjct: 136 VGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNN--FRCNRKIIGARSYHIGRPIS-- 191
Query: 207 AMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYK 266
P ++ D NGHGTHT STA G VS +LYG+G GTA+GG P AR+AAYK
Sbjct: 192 --------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYK 243
Query: 267 VCWKPNGANLCNAADIIAGFDVAIHDGVDIISASL-GSKPKEHFESSVAVGSFHAMMHGI 325
VCW + C+ DI+A +D AI DGVDIIS S+ G+ P+ +F ++A+GSFHA+ GI
Sbjct: 244 VCWN----DGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGI 299
Query: 326 LVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQ 385
L SAGN GP T ++ PW+L+V AST DR+F + V +GN +G SI +
Sbjct: 300 LTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDN 356
Query: 386 DFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAV 445
+YPL++G + C + +++P +KGKI++C +A G + ++ GA
Sbjct: 357 QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC-EASFGPHEFFKSLD-GAA 414
Query: 446 GMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWS 505
G+++ ++ D S + LP++ ++ D + YIY+ +P A++ S T N
Sbjct: 415 GVLMTSNTRDYADS----YPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAP 470
Query: 506 RMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFD--PRRVPYNVMSGT 563
+ S FS+RGPN ++KPD+ PGV+I+AA+ PS R +N++SGT
Sbjct: 471 VVVS-FSSRGPNRATKDVIKPDISGPGVEILAAW-----PSVAPVGGIRRNTLFNIISGT 524
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
SM+CPH+ GIA VKT +P WSPAAIKSA+MTTA+ ++ +P + FAYG+
Sbjct: 525 SMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE---------FAYGS 575
Query: 624 GHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADFNYP 683
GHVNP A+ PGLVYD DY+ +LCG GYN + T + D NYP
Sbjct: 576 GHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYP 635
Query: 684 SIAVPNLVNGSMT----VSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEEL 739
S + V+ S T +R L +V TY+A I+ G++ V P L+F G+
Sbjct: 636 SFGLS--VSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK 693
Query: 740 TFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAV 778
+F T +V+G+ K V LVWSDG H V+S I +
Sbjct: 694 SF--TLTVRGSIKGFV---VSASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 297/763 (38%), Positives = 410/763 (53%), Gaps = 63/763 (8%)
Query: 26 AKKPYVVYLGSHSHGSNPTSHDINRARIKHH-EFLGSFLGSVEEAAGLIFHSYGRYINGF 84
AK Y++YLG + T IK H L S S EEA +SY + N F
Sbjct: 34 AKDFYIIYLGDRPDNTEET--------IKTHINLLSSLNISQEEAKERKVYSYTKAFNAF 85
Query: 85 GAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGED 144
A L AK++ EVVSV + LHTT+SW+F+GL P +A + D
Sbjct: 86 AAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGL-------PLTAKRHLKAERD 138
Query: 145 VIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYIS-EGLIE 203
VIIG LD+G+ P+S+SF D G+GP P +W+G+C N CN K+IG +Y +G +
Sbjct: 139 VIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKN-FTGCNNKIIGAKYFKHDGNVP 197
Query: 204 SCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLA 263
+ + + ID +GHGTHT ST G V+N SLYG+ GTA+G P ARLA
Sbjct: 198 A-----------GEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLA 246
Query: 264 AYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH 323
YKVCW +G C DI+AGF+ AIHDGV+IIS S+G ++ S++VGSFHAM
Sbjct: 247 MYKVCWARSG---CADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRK 303
Query: 324 GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383
GIL VASAGN GP+ TV N PW+LTV AS DR F S + LGN G I+
Sbjct: 304 GILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPK 363
Query: 384 TQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA- 442
+ YPL++G A A C + ++D +KVKGK+++C ++G + ++
Sbjct: 364 AKS-YPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVC---RMGGGGVESTIKSY 419
Query: 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNK 502
G G I+ + DQ + + P VN G +Y YI +T + AS T
Sbjct: 420 GGAGAIIVS---DQYLDNAQIFMAPATSVNSSVGDIIYRYINSTRS--ASAVIQKTRQVT 474
Query: 503 IWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSG 562
I + + FS+RGPN +LKPD+ APG+DI+AAFT + + + D + + ++SG
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 563 TSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYG 622
TSMACPHVAG+A VK+ HPDW+PAAIKSAI+T+A PI +V K FAYG
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA-------KPISRRV--NKDAEFAYG 585
Query: 623 AGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKC----PGPFSIA 678
G +NP A PGLVYD+ Y+ +LCG GYN + + + C PG
Sbjct: 586 GGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRS-VSCSSIVPG-LGHD 643
Query: 679 DFNYPSIAVPNLVNGSMTVS---RRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKY 735
NYP+I + + T++ RR+ NVG P+ Y A + GV VEP +L+F+K
Sbjct: 644 SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKA 703
Query: 736 GEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAV 778
++ +FK+ K + V G LVW H+V+S I +
Sbjct: 704 SQKRSFKVVVKAK---QMTPGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 179/392 (45%), Gaps = 74/392 (18%)
Query: 227 HGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGF 286
HGTH T + GT KG +P A L AY+V P G+ ++IAG
Sbjct: 233 HGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLG-PGGSGTTE--NVIAGV 277
Query: 287 DVAIHDGVDIISASLG-SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP 345
+ A+ DG D+++ SLG S + +S A+ AM G++ V S GNSGP
Sbjct: 278 ERAVQDGADVMNLSLGNSLNNPDWATSTALD--WAMSEGVVAVTSNGNSGPN-------- 327
Query: 346 PWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGE--AAKVANVSN 403
W TVG+ T RE S GA+ L + Y + G +AKV +
Sbjct: 328 GW--TVGSPGTSREAISV----------GAT-----QLPLNEYAVTFGSYSSAKVMGYNK 370
Query: 404 EDATQCKNGT--------------IDPEKVKGKILICYDAKIGDA-KGQRAAQAGAVGMI 448
ED + N + + + GK+ + I K A +AGA+GM+
Sbjct: 371 EDDVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMV 430
Query: 449 LANSREDQNISLNMVHF-LPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRM 507
+ N+ + I N+ +PT ++ +DG+ + + + E + T +K
Sbjct: 431 VYNNLSGE-IEANVPGMSVPTIKLSLEDGEKLVSALKAGE----TKTTFKLTVSKALGEQ 485
Query: 508 TSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMAC 567
+ FS+RGP ++D ++KPD+ APGV+I++ P+H+ P Y GTSMA
Sbjct: 486 VADFSSRGP-VMDTWMIKPDISAPGVNIVSTI-----PTHDPDHPYG--YGSKQGTSMAS 537
Query: 568 PHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
PH+AG ++K P WS IK+AIM TA T
Sbjct: 538 PHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVT 569
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 120/457 (26%), Positives = 190/457 (41%), Gaps = 108/457 (23%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 187 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 233
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 234 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T +K A
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTAD 347
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICY 427
+K T F P A + A ED D + VKGKI I +
Sbjct: 348 QQDKEMPVLSTNRFEPNKAYDYAYANRGMKED---------DFKDVKGKIALIERGDIDF 398
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDGQSVYAYIYNT 486
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG +
Sbjct: 399 KDKIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLK 447
Query: 487 ENPVASMTNSITEFNKIWSRMT----SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542
ENP ++T + T K+ + S FS+ G L +KPD+ APG DI+++ N
Sbjct: 448 ENPQKTITFNATP--KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANN 503
Query: 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAIM 594
Y +SGTSM+ P VAGI GL++ T +PD +P+ K +M
Sbjct: 504 -------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLM 550
Query: 595 TTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
++AT + D+ +P GAG V+ A
Sbjct: 551 SSATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 120/457 (26%), Positives = 190/457 (41%), Gaps = 108/457 (23%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 187 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 233
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 234 GLADYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T +K A
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTAD 347
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICY 427
+K T F P A + A ED D + VKGKI I +
Sbjct: 348 QQDKEMPVLSTNRFEPNKAYDYAYANRGMKED---------DFKDVKGKIALIERGDIDF 398
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDGQSVYAYIYNT 486
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG +
Sbjct: 399 KDKIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLK 447
Query: 487 ENPVASMTNSITEFNKIWSRMT----SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542
ENP ++T + T K+ + S FS+ G L +KPD+ APG DI+++ N
Sbjct: 448 ENPQKTITFNATP--KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANN 503
Query: 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAIM 594
Y +SGTSM+ P VAGI GL++ T +PD +P+ K +M
Sbjct: 504 K-------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLM 550
Query: 595 TTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
++AT + D+ +P GAG V+ A
Sbjct: 551 SSATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 119/457 (26%), Positives = 189/457 (41%), Gaps = 108/457 (23%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 187 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 233
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 234 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T +K A
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTAD 347
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICY 427
+K T F P A + A ED D + VKGKI I +
Sbjct: 348 QQDKEMPVLSTNRFEPNKAYDYAYANRGMKED---------DFKDVKGKIALIERGDIDF 398
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDGQSVYAYIYNT 486
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG +
Sbjct: 399 KDKIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLK 447
Query: 487 ENPVASMTNSITEFNKIWSRMT----SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542
ENP ++T + T K+ + S FS+ G L +KPD+ APG DI+++ N
Sbjct: 448 ENPQKTITFNATP--KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANN 503
Query: 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAA----IKSAIM 594
Y +SGTSM+ P VAGI GL++ +PD +P+ K +M
Sbjct: 504 -------------KYAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLM 550
Query: 595 TTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
++AT + D+ +P GAG V+ A
Sbjct: 551 SSATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 188/458 (41%), Gaps = 110/458 (24%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 189 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 235
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 236 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 295
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T +K A
Sbjct: 296 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTAD 349
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICY 427
+K T F P A + A + ED D + VKGKI I +
Sbjct: 350 QQDKEMPVLSTNRFEPNKAYDYAYANRGTKED---------DFKDVKGKIALIERGDIDF 400
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDG-----QSVYA 481
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG S
Sbjct: 401 KDKIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKT 455
Query: 482 YIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTN 541
+N P T S T+ ++ FS+ G L +KPD+ APG DI+++ N
Sbjct: 456 ITFNA-TPKVLPTASGTKLSR--------FSSWG--LTADGNIKPDIAAPGQDILSSVAN 504
Query: 542 EYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAI 593
Y +SGTSM+ P VAGI GL++ T +PD +P+ K +
Sbjct: 505 N-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVL 551
Query: 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
M++AT + D+ +P GAG V+ A
Sbjct: 552 MSSATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/458 (25%), Positives = 188/458 (41%), Gaps = 110/458 (24%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSL-YGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
T++D HGTH G+ S Y + +G P+A+L +V + N
Sbjct: 189 TAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRV-------EIVN 235
Query: 279 A-ADIIAGFDVAIHDGVD----IISASLGSKPKEH--FESSVAVGSFHAMMHGILVVASA 331
AD + AI D V+ +I+ S G+ + +A G+ +V SA
Sbjct: 236 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 295
Query: 332 GNS----GPAEKTVDNVPPW-----------VLTVGASTTDREFSSYVTLGNKMVIKGAS 376
GN G + + P + LTV + + D++ + T +K A
Sbjct: 296 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTAD 349
Query: 377 IAEKGS---LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKIL------ICY 427
+K T F P A + A + ED D + VKGKI I +
Sbjct: 350 QQDKEMPVLSTNRFEPNKAYDYAYANRGTKED---------DFKDVKGKIALIERGDIDF 400
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQ-NISLNMVHFLPTAYVNYKDG-----QSVYA 481
KI +AK +AGAVG+++ ++++ I L V +P A+++ KDG S
Sbjct: 401 KDKIANAK-----KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKT 455
Query: 482 YIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTN 541
+N P T S T+ ++ FS+ G L +KPD+ APG DI+++ N
Sbjct: 456 ITFNA-TPKVLPTASGTKLSR--------FSSWG--LTADGNIKPDIAAPGQDILSSVAN 504
Query: 542 EYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVK----TLHPDWSPAA----IKSAI 593
Y +SGTSM+ P VAGI GL++ T +PD +P+ K +
Sbjct: 505 N-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVL 551
Query: 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSA 631
M++AT + D+ +P GAG V+ A
Sbjct: 552 MSSATA-------LYDEDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | ||||||
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.976 | 0.992 | 0.555 | 0.0 | |
| 224056865 | 772 | predicted protein [Populus trichocarpa] | 0.951 | 0.962 | 0.569 | 0.0 | |
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.980 | 0.996 | 0.560 | 0.0 | |
| 224122316 | 775 | predicted protein [Populus trichocarpa] | 0.967 | 0.975 | 0.559 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.943 | 0.989 | 0.555 | 0.0 | |
| 227053577 | 771 | subtilisin-like serine protease [Carica | 0.952 | 0.964 | 0.544 | 0.0 | |
| 296090005 | 803 | unnamed protein product [Vitis vinifera] | 0.943 | 0.917 | 0.550 | 0.0 | |
| 356510927 | 773 | PREDICTED: subtilisin-like protease-like | 0.950 | 0.959 | 0.538 | 0.0 | |
| 255567212 | 771 | Xylem serine proteinase 1 precursor, put | 0.955 | 0.967 | 0.548 | 0.0 | |
| 357462409 | 772 | Subtilisin-like protease [Medicago trunc | 0.952 | 0.963 | 0.532 | 0.0 |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/783 (55%), Positives = 554/783 (70%), Gaps = 20/783 (2%)
Query: 1 MRLSNGFVLLLLFFILSLLQTPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLG 60
MRL + + LL F L+L+Q P F + KPYVVY G HSHG P+S D N A+ H+EFLG
Sbjct: 1 MRLPSPTLCLLPFLFLTLVQRPTFASIKPYVVYFGGHSHGPKPSSFDANLAKDSHYEFLG 60
Query: 61 SFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWE 120
SFLGS E A IF+SY R+INGF A LE+E A +IA+HP VVSVFL +G HTT SW
Sbjct: 61 SFLGSREFAEDAIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWS 120
Query: 121 FLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQND 180
FLGLEKD +P S W KARFGED IIGNLD+GVWPES+SF+DEG+GP+P +W+G CQN
Sbjct: 121 FLGLEKDGVVPSSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNG 180
Query: 181 TNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFV 240
+ CNRKLIG RY ++G +NSSF P D +GHG+HTLSTAGG+FV
Sbjct: 181 YDPGFHCNRKLIGARYFNKGYASIVGHLNSSFDTPR------DEDGHGSHTLSTAGGNFV 234
Query: 241 SNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300
+ S++ MG GTAKGGSPKAR+AAYKVC+ P + C ADI+A FD AI DGVD++S S
Sbjct: 235 AGASVFYMGNGTAKGGSPKARVAAYKVCYPPVDGDECFDADILAAFDAAISDGVDVLSVS 294
Query: 301 LGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREF 360
LG P F SVA+GSFHA+ HGI+V+ SAGNSGP + TV NV PW +TVGAST DREF
Sbjct: 295 LGGNPTAFFNDSVAIGSFHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREF 354
Query: 361 SSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVK 420
SYV LGNK+ KG S++ K F+PL++ A+ N S E+A CK+G++DPEK K
Sbjct: 355 PSYVVLGNKISFKGESLSAKALPKNKFFPLMSAADARATNASVENALLCKDGSLDPEKAK 414
Query: 421 GKILICY---DAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQ 477
GKIL+C +A++ KGQ+AA AGAVGM+LAN+++ N L H LP +++NY G
Sbjct: 415 GKILVCLRGINARVD--KGQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGV 472
Query: 478 SVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537
+++ YI +TE PVA +T+ +T + + + FS++GPN + P ILKPD+ APGV +IA
Sbjct: 473 AIFKYINSTEYPVAYITHPVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIA 532
Query: 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597
A+T GP++++FD RRV +N +SGTSM+CPHV+GI GL+KTLHP WSPA+IKSAIMTTA
Sbjct: 533 AYTKAQGPTNQDFDTRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTA 592
Query: 598 TTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQS 657
T+D++ PIL+ KA+PF+YGAGH+ PN A+DPGLVYDL DYL LC LGYN++
Sbjct: 593 MTQDNTMEPILN-ANHTKASPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNET 651
Query: 658 IIDLFTQPKEPFKCPG-PFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQIT 716
I F+ P++CP P S+A+FNYPSI VP NGS+T+SR +KNVG+P+ TYK +I
Sbjct: 652 QISTFSD--APYECPSKPISLANFNYPSITVPKF-NGSITLSRTVKNVGSPS-TYKLRIR 707
Query: 717 EIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTI 776
+ GVS VEP L F K GEE F +T KG A DYVFGEL+WSD H+V+S I
Sbjct: 708 KPTGVSVSVEPKKLEFKKVGEEKAFTVTLKGKGK---AAKDYVFGELIWSDNKHHVRSPI 764
Query: 777 AVK 779
VK
Sbjct: 765 VVK 767
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056865|ref|XP_002299062.1| predicted protein [Populus trichocarpa] gi|222846320|gb|EEE83867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/758 (56%), Positives = 527/758 (69%), Gaps = 15/758 (1%)
Query: 24 FTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYING 83
F +K YVVYLGSHSHG PT DI R H+E LGSF E+A IF+SY ING
Sbjct: 26 FATQKSYVVYLGSHSHGLEPTQSDIERVTDSHYELLGSFTEGKEKAKEKIFYSYTNNING 85
Query: 84 FGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGE 143
F AVLEEE A +A+HP+VVSVFL +G LHTTRSW FLGLE D +PP S W KAR+GE
Sbjct: 86 FAAVLEEEEASSLAKHPDVVSVFLNKGKKLHTTRSWNFLGLEADGMVPPYSLWKKARYGE 145
Query: 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIE 203
DVIIGNLD+GVWPES+SF+DEGMGP+P +W+G CQ+D + CNRKLIG RY ++G
Sbjct: 146 DVIIGNLDTGVWPESKSFSDEGMGPVPSKWRGICQHDNKDGVVCNRKLIGTRYFNKGYAA 205
Query: 204 SCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLA 263
+NSSF T+ D GHGTHTLSTA G+FV + G G GTAKGGSP AR A
Sbjct: 206 YAGHLNSSF------QTARDSEGHGTHTLSTAAGNFVPGADVLGYGNGTAKGGSPHARAA 259
Query: 264 AYKVCWKP-NGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMM 322
AYKVCW P NG+N C ADI+A FDVAI DGVD++S SLG P E + ++A+GSFHA+
Sbjct: 260 AYKVCWPPINGSNECFDADILAAFDVAISDGVDVLSVSLGGDPAEFSDDAIAIGSFHAVA 319
Query: 323 HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382
GI VVASAGNSGP+ TV NV PW++TVGAST DR F+ YV LGN+ +KGAS++EK
Sbjct: 320 KGITVVASAGNSGPSPGTVSNVAPWLITVGASTMDRAFTIYVALGNRKHLKGASLSEKRL 379
Query: 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDA-KGQRAAQ 441
+ FYPLI+ AK A+ S EDA CK G +DP+KVKGKIL+C + G KG +A
Sbjct: 380 PAEKFYPLISAADAKAADQSEEDALLCKPGALDPKKVKGKILVCLRGENGRVDKGHQALL 439
Query: 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFN 501
AGAVGMILAN N + H LP A+VN+ DG++V++Y+ T+ P+A +TN TE
Sbjct: 440 AGAVGMILANDENSGNEIIADTHVLPAAHVNFTDGEAVFSYLNFTKEPMAFLTNVRTELA 499
Query: 502 KIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMS 561
+ + FS+RGPN+I+ +ILKPD+ APGV +IAAFT GPS E+D RR PYN S
Sbjct: 500 TKPAPFMASFSSRGPNIIEESILKPDITAPGVSVIAAFTQAIGPSDAEYDKRRTPYNTQS 559
Query: 562 GTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAY 621
GTSM+CPHV+GI GL+KTLHP+WSPAAI+SAIMTTATT D++ PI+D T KATPFA
Sbjct: 560 GTSMSCPHVSGIVGLLKTLHPEWSPAAIRSAIMTTATTRDNNGEPIMDS-TNTKATPFAD 618
Query: 622 GAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADFN 681
GAGHV PN A DPGL+YDL D+L +LC G + I LF+ +P+ CP FS+ADFN
Sbjct: 619 GAGHVQPNHAADPGLIYDLTVNDFLNFLCNRGNTKKNIKLFSD--KPYTCPKSFSLADFN 676
Query: 682 YPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTF 741
YPSI V NL N S+TV+RR+KNVG+P TY I GV+ V P L F K GEE F
Sbjct: 677 YPSITVTNL-NDSITVTRRVKNVGSPG-TYNIHIRAPPGVTVSVAPSILRFQKIGEEKMF 734
Query: 742 KITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
K+TF + K V TDYVFG L W DG H V+S + V+
Sbjct: 735 KVTFKLA--PKAVLTDYVFGMLTWGDGKHFVRSPLVVR 770
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/780 (56%), Positives = 557/780 (71%), Gaps = 14/780 (1%)
Query: 1 MRLSNGFVLLLLFFILSLLQTPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLG 60
MRLS + LL F ++SLL +P F ++ Y+VYLG+HSHG P+S D+++ H+EFLG
Sbjct: 1 MRLSGPALCLLSFLLISLLLSPTFAIERSYIVYLGAHSHGPEPSSDDLDQVTESHYEFLG 60
Query: 61 SFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWE 120
SFLGS + A I +SY R+INGF A L++ A QIA HP+VVSVFL +G LHTTRSW
Sbjct: 61 SFLGSRDNAKEAIIYSYTRHINGFAATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWH 120
Query: 121 FLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQND 180
FLGLE D IP +S W KARFG+D IIGNLD+GVWPES SF+DEGMGPIP RW+G CQND
Sbjct: 121 FLGLENDGIIPSNSIWKKARFGQDTIIGNLDTGVWPESASFSDEGMGPIPSRWRGICQND 180
Query: 181 TNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFV 240
+ CNRKLIG RY +G + ++NSSF P D GHG+HTLSTAGG+FV
Sbjct: 181 KDAGFHCNRKLIGARYFHQGYAAAVGSLNSSFHTPR------DTEGHGSHTLSTAGGNFV 234
Query: 241 SNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300
S++G G GTAKGGSPKAR+AAYKVCW P G N C ADI+A FD+AIHDGVD++SAS
Sbjct: 235 EGASVFGFGNGTAKGGSPKARVAAYKVCWPPVGGNECFDADILAAFDIAIHDGVDVLSAS 294
Query: 301 LGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREF 360
LG P F S+++GSFHA+ HGI+VV SAGNSGPA+ TV N+ PW TVGAST DR+F
Sbjct: 295 LGGLPTPFFNDSLSIGSFHAVKHGIVVVCSAGNSGPADGTVSNISPWQFTVGASTMDRQF 354
Query: 361 SSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVK 420
SY+ LGNK ++G S++ K F+PLI+ AK AN S +DA CK GT+D KVK
Sbjct: 355 PSYLVLGNKKRLEGGSLSPKALPPNKFFPLISAADAKAANASADDALLCKAGTLDHSKVK 414
Query: 421 GKILICYDAKIGDA-KGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSV 479
GKIL+C + KGQ+AA AGAVGM+LAN+ N + H LP +++N+ DG +V
Sbjct: 415 GKILVCLRGENARVDKGQQAALAGAVGMVLANNELTGNEVIADPHVLPASHINFTDGVAV 474
Query: 480 YAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF 539
+ Y+ +T++P+A +T S TE + + FS++GPN I P ILKPD+ APGV +IAA+
Sbjct: 475 FTYLNSTKSPIAYITPSTTELGTKPAPFMAAFSSKGPNTITPEILKPDITAPGVSVIAAY 534
Query: 540 TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
T GP++++FD RRV +N +SGTSM+CPHV+GI GL+KTLHPDWSPAAI+SA+MTTA T
Sbjct: 535 TEAQGPTNQDFDKRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPDWSPAAIRSAMMTTART 594
Query: 600 EDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSII 659
D+S IL+ + KATPF+YGAGHV PN A++PGLVYDL DYL +LC LGYNQ++I
Sbjct: 595 MDNSMEAILN-ASYFKATPFSYGAGHVRPNRAMNPGLVYDLNVNDYLNFLCALGYNQTLI 653
Query: 660 DLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIV 719
+F++ P+ CP P S+ +FNYPSI VP L +GS+TV+R LKNVG P TYKA+I +
Sbjct: 654 KMFSE--RPYTCPKPISLTNFNYPSITVPKL-HGSITVTRTLKNVGPPG-TYKARIRKPT 709
Query: 720 GVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
G+S V+P +L F K GEE TF +T ++ A DYVFGEL+WSD H V+S I VK
Sbjct: 710 GISVSVKPDSLKFNKIGEEKTFSLT--LQAERAGAARDYVFGELIWSDAKHFVRSPIVVK 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122316|ref|XP_002330593.1| predicted protein [Populus trichocarpa] gi|222872151|gb|EEF09282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/776 (55%), Positives = 538/776 (69%), Gaps = 20/776 (2%)
Query: 9 LLLLFFILSLLQTPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEE 68
LLL FFI SLLQ P F KK YVVYLGSHSHG PT DI+R H+E LG F S E+
Sbjct: 10 LLLSFFIFSLLQPPTFAIKKSYVVYLGSHSHGLEPTQADIDRVTDSHYELLGLFTESKEK 69
Query: 69 AAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDN 128
A IF+SY INGF AVLEEE A +A+HP+VVSVFL + LHTT SW FLGLEKD
Sbjct: 70 AKEKIFYSYTNSINGFAAVLEEEEASALAKHPDVVSVFLNKARKLHTTHSWSFLGLEKDG 129
Query: 129 QIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCN 188
+PP S W KAR+GEDVIIGNLD+GVWPES+SF+DEG+GP+P +W+G CQN T + + CN
Sbjct: 130 VVPPSSLWKKARYGEDVIIGNLDTGVWPESKSFSDEGLGPVPSKWRGICQNATKEGVPCN 189
Query: 189 RKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGM 248
RKLIG RY ++G +NSSF T+ D GHGTHTLSTA G+FV +++G
Sbjct: 190 RKLIGARYFNKGYGSIGGHLNSSF------QTARDIEGHGTHTLSTAAGNFVPGANVFGN 243
Query: 249 GYGTAKGGSPKARLAAYKVCWKPNGANL--CNAADIIAGFDVAIHDGVDIISASLGSKPK 306
G GTAKGGSP+AR+AAYKVCW G N C ADI+AGFDVAI DGVD++S SLG
Sbjct: 244 GKGTAKGGSPRARVAAYKVCWPAVGVNEGGCYEADILAGFDVAISDGVDVLSVSLGGAID 303
Query: 307 EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTL 366
E+ + ++A+GSFHA GI VVASAGNSGP +V NV PW++TVGAST DR F+ YV L
Sbjct: 304 EYSDDAIAIGSFHAFKKGITVVASAGNSGPGPGSVSNVAPWLITVGASTLDRAFTIYVAL 363
Query: 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILIC 426
GN+ +KG S+++K + FYPLI+G AK +N S EDA CK GT+D +KVKGKIL+C
Sbjct: 364 GNRKHLKGVSLSQKSLPARKFYPLISGARAKASNQSEEDANLCKPGTLDSKKVKGKILVC 423
Query: 427 Y---DAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYI 483
+ ++ KG A AGAVGMILAN E N L H LP A++ DGQ+V++Y+
Sbjct: 424 LRGVNPRV--EKGHVALLAGAVGMILANDEESGNGILADAHVLPAAHIISTDGQAVFSYL 481
Query: 484 YNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEY 543
+T++P A +TN TE + + FS+RGPN+++ +ILKPD+ APGV +IAAFT
Sbjct: 482 NSTKDPWAYITNVRTELGTKPAPFMASFSSRGPNILEESILKPDITAPGVSVIAAFTLAT 541
Query: 544 GPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSS 603
GP+ +D RR+P+N SGTSM+CPHV+GI GL+K+LHPDWSPAAI+SAIMTTATT D++
Sbjct: 542 GPTDTAYDKRRIPFNTESGTSMSCPHVSGIVGLLKSLHPDWSPAAIRSAIMTTATTRDNN 601
Query: 604 KHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFT 663
PILD + +ATPFAYGAGHV PN A DPGLVYDL D+L YLC GY + LFT
Sbjct: 602 GDPILDS-SNTRATPFAYGAGHVQPNRAADPGLVYDLTVNDFLNYLCSRGYTAKDLKLFT 660
Query: 664 QPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSA 723
+P+ CP FS+ DFNYPSI+ NL N ++TV+RR+KNVG+P Y + E GV
Sbjct: 661 D--KPYTCPKSFSLTDFNYPSISAINL-NDTITVTRRVKNVGSPG-KYYIHVREPTGVLV 716
Query: 724 VVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
V P TL F K GEE TFK+TF + K DY FG L WSDG H V+S + V+
Sbjct: 717 SVAPTTLEFKKLGEEKTFKVTFKLAPKWK--LKDYTFGILTWSDGKHFVRSPLVVR 770
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/751 (55%), Positives = 543/751 (72%), Gaps = 14/751 (1%)
Query: 30 YVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLE 89
Y+VYLG+HSHG PTS D++R H++FLGSFLGS E+A +F+SY + INGF A+LE
Sbjct: 7 YIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAILE 66
Query: 90 EEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGN 149
EE A +IA+HP V+SVFL +G LHTTRSW FL LEK+ I P+S W KARFGED IIGN
Sbjct: 67 EEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTIIGN 126
Query: 150 LDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMN 209
LD+GVWPES+SF+DEGMG +P +W+GTCQ++T A+TCNRKLIG RY ++G +N
Sbjct: 127 LDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGPLN 186
Query: 210 SSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269
SSF ++ DH GHG+HTLSTAGGS V S++G G GTAKGGSP AR+AAYKVCW
Sbjct: 187 SSF------NSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVCW 240
Query: 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVA 329
C ADI+A FD AIHDGVD++S SLG ++F +A+GSFHA+ GI+VV+
Sbjct: 241 PQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVVVS 300
Query: 330 SAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
SAGN GP + +V NV PW++TVGAST DREF++YV LGN+ +KG S++ KG + FYP
Sbjct: 301 SAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSLSTKGLPSNKFYP 360
Query: 390 LIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDA-KGQRAAQAGAVGMI 448
+I+ AK AN S +DA CK GT++P+KVKGKIL+C + KG++AA AGAVG I
Sbjct: 361 VISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALAGAVGFI 420
Query: 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508
LAN + N + H LP ++VN+ DG +V+ YI +T+NP+A +T T+ +
Sbjct: 421 LANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGIKPAPFM 480
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS++GPN I P ILKPD+ APGV+IIAA++ GP+ + FD RR+P+N SGTSM+CP
Sbjct: 481 ASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSGTSMSCP 540
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
H++GI GL+KTLHPDWSPAAIKSAIMT+A T D + P+L+ + KATPF+YGAGHV P
Sbjct: 541 HISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLNS-SNLKATPFSYGAGHVRP 599
Query: 629 NSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVP 688
N A+DPGLVYD DYL +LC +GYN++ + +F+Q +P+KCP FS+ FNYPSI P
Sbjct: 600 NRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ--KPYKCPKSFSLTGFNYPSITAP 657
Query: 689 NLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748
NL +GS+T+SR +KNVGTP TY A + G+S V+P L F +YGEE +F++T K
Sbjct: 658 NL-SGSVTISRTVKNVGTPG-TYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLTLKAK 715
Query: 749 GNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
G + VA DYVFG L+WSDG H V+S+I VK
Sbjct: 716 G--RRVAEDYVFGRLIWSDGQHYVRSSIVVK 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/764 (54%), Positives = 545/764 (71%), Gaps = 20/764 (2%)
Query: 21 TPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRY 80
TP +K YVVYLG+HSHG +S D++R + H++FLGSFLGS EEA IF+SY ++
Sbjct: 21 TPVIASKSSYVVYLGAHSHGLELSSADLDRVKESHYDFLGSFLGSPEEAQESIFYSYTKH 80
Query: 81 INGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKAR 140
INGF A L +E A ++A+HP+VVSVFL +G LHTTRSW+FLGLE++ +P S W KAR
Sbjct: 81 INGFAAELNDEVAAKLAKHPKVVSVFLNKGRKLHTTRSWDFLGLEQNGVVPSSSIWKKAR 140
Query: 141 FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEG 200
FGED IIGNLD+GVWPES+SF+DEG+GPIP +W+G C + + + CNRKLIG R+ + G
Sbjct: 141 FGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWRGICDHGKDSSFHCNRKLIGARFFNRG 200
Query: 201 LIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKA 260
+ ++NSSF P D+ GHGTHTLSTAGG+ V+N S++G+G GTAKGGSP+A
Sbjct: 201 YASAVGSLNSSFESPR------DNEGHGTHTLSTAGGNMVANASVFGLGKGTAKGGSPRA 254
Query: 261 RLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHA 320
R+AAYKVCW P N C ADI+A FD AIHD VD++S SLG F SVA+GSFHA
Sbjct: 255 RVAAYKVCWPPVLGNECFDADILAAFDAAIHDRVDVLSVSLGGTAGGFFNDSVAIGSFHA 314
Query: 321 MMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEK 380
+ HGI+VV SAGNSGP + +V NV PW +TVGAST DREF SYV LGN M KG S+++
Sbjct: 315 VKHGIVVVCSAGNSGPDDGSVSNVAPWQITVGASTMDREFPSYVLLGNNMSFKGESLSDA 374
Query: 381 GSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILIC---YDAKIGDAKGQ 437
+F+PLI+ AK N SNE+A C+ G +DP+KVKGKIL+C +A++ KGQ
Sbjct: 375 VLPGTNFFPLISALNAKATNASNEEAILCEAGALDPKKVKGKILVCLRGLNARVD--KGQ 432
Query: 438 RAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSI 497
+AA AGAVGMILANS + N + H LP +++++ DG SV+ YI T +PVA MT
Sbjct: 433 QAALAGAVGMILANSELNGNEIIADAHVLPASHISFTDGLSVFEYINLTNSPVAYMTRPK 492
Query: 498 TEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPY 557
T+ + + + FS++GPN++ P ILKPD+ APGV++IAA+T GP+++ FD RRV +
Sbjct: 493 TKLPTKPAPVMAAFSSKGPNIVTPEILKPDITAPGVNVIAAYTRAQGPTNQNFDRRRVQF 552
Query: 558 NVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKAT 617
N +SGTSM+CPHV+GI GL+KTL+P WSPAAI+SAIMT+ATT D+ IL+ + KAT
Sbjct: 553 NSVSGTSMSCPHVSGIVGLLKTLYPSWSPAAIRSAIMTSATTMDNINESILN-ASNVKAT 611
Query: 618 PFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGP-FS 676
PF+YGAGHV PN A++PGLVYDL DYL +LC LGY++++I +F+ K F CP S
Sbjct: 612 PFSYGAGHVQPNQAMNPGLVYDLNTKDYLKFLCALGYSKTLISIFSNDK--FNCPRTNIS 669
Query: 677 IADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYG 736
+ADFNYPSI VP L G +T+SR++KNVG+PT TY+ + + G+S V+P L F K G
Sbjct: 670 LADFNYPSITVPEL-KGLITLSRKVKNVGSPT-TYRVTVQKPKGISVTVKPKILKFKKAG 727
Query: 737 EELTFKITFSVKGNDKPVATDYVFGELVWSD-GFHNVKSTIAVK 779
EE +F +T +K + +YVFGELVWSD H V+S I VK
Sbjct: 728 EEKSFTVTLKMKAKNP--TKEYVFGELVWSDEDEHYVRSPIVVK 769
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/757 (55%), Positives = 543/757 (71%), Gaps = 20/757 (2%)
Query: 30 YVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLE 89
Y+VYLG+HSHG PTS D++R H++FLGSFLGS E+A +F+SY + INGF A+LE
Sbjct: 59 YIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAILE 118
Query: 90 EEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGN 149
EE A +IA+HP V+SVFL +G LHTTRSW FL LEK+ I P+S W KARFGED IIGN
Sbjct: 119 EEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTIIGN 178
Query: 150 LDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMN 209
LD+GVWPES+SF+DEGMG +P +W+GTCQ++T A+TCNRKLIG RY ++G +N
Sbjct: 179 LDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGPLN 238
Query: 210 SSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269
SSF ++ DH GHG+HTLSTAGGS V S++G G GTAKGGSP AR+AAYKVCW
Sbjct: 239 SSF------NSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVCW 292
Query: 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVA 329
C ADI+A FD AIHDGVD++S SLG ++F +A+GSFHA+ GI+VV+
Sbjct: 293 PQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVVVS 352
Query: 330 SAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIK------GASIAEKGSL 383
SAGN GP + +V NV PW++TVGAST DREF++YV LGN+ +K G S++ KG
Sbjct: 353 SAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKNEHLQMGMSLSTKGLP 412
Query: 384 TQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDA-KGQRAAQA 442
+ FYP+I+ AK AN S +DA CK GT++P+KVKGKIL+C + KG++AA A
Sbjct: 413 SNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALA 472
Query: 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNK 502
GAVG ILAN + N + H LP ++VN+ DG +V+ YI +T+NP+A +T T+
Sbjct: 473 GAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGI 532
Query: 503 IWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSG 562
+ + FS++GPN I P ILKPD+ APGV+IIAA++ GP+ + FD RR+P+N SG
Sbjct: 533 KPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSG 592
Query: 563 TSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYG 622
TSM+CPH++GI GL+KTLHPDWSPAAIKSAIMT+A T D + P+L+ + KATPF+YG
Sbjct: 593 TSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLNS-SNLKATPFSYG 651
Query: 623 AGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADFNY 682
AGHV PN A+DPGLVYD DYL +LC +GYN++ + +F+Q +P+KCP FS+ FNY
Sbjct: 652 AGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ--KPYKCPKSFSLTGFNY 709
Query: 683 PSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFK 742
PSI PNL +GS+T+SR +KNVGTP TY A + G+S V+P L F +YGEE +F+
Sbjct: 710 PSITAPNL-SGSVTISRTVKNVGTPG-TYTASVKAPPGISVAVKPNKLEFREYGEEKSFR 767
Query: 743 ITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
+T KG + VA DYVFG L+WSDG H V+S+I VK
Sbjct: 768 LTLKAKG--RRVAEDYVFGRLIWSDGQHYVRSSIVVK 802
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/761 (53%), Positives = 532/761 (69%), Gaps = 19/761 (2%)
Query: 22 PAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYI 81
P+F KK YVVYLG+HSH +S D N+ HHEFLGSFLGS IF+SY R+I
Sbjct: 23 PSFALKKSYVVYLGAHSHKPELSSVDFNQVTQSHHEFLGSFLGSSNTTKDSIFYSYTRHI 82
Query: 82 NGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARF 141
NGF A+LEEE A +I++HP+V+SVF G LHTTRSW+F+GLE + I +S W KARF
Sbjct: 83 NGFAAILEEEVAAEISKHPKVLSVFENRGRKLHTTRSWDFMGLEHNGVIQSNSIWKKARF 142
Query: 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGL 201
GE VIIGNLD+GVWPES+SF++EG+GPIP +W+G C N + CNRKLIG RY ++G
Sbjct: 143 GEGVIIGNLDTGVWPESKSFSEEGLGPIPSKWRGICHNGIDHTFHCNRKLIGARYFNKGY 202
Query: 202 IESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKAR 261
+NSSF P D+ GHGTHTLSTAGG+ V+ VS++G G+GTAKGGSP AR
Sbjct: 203 ASVAGPLNSSFDSPR------DNEGHGTHTLSTAGGNMVARVSVFGQGHGTAKGGSPMAR 256
Query: 262 LAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAM 321
+AAYKVCW P + C ADI+A FD+AIHDGVD++S SLG F+ SVA+GSFHA
Sbjct: 257 VAAYKVCWPPVAGDECFDADILAAFDLAIHDGVDVLSLSLGGSASTFFKDSVAIGSFHAA 316
Query: 322 MHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKG 381
HGI+VV SAGNSGPA+ T +N+ PW +TV AST DR+F +YV LGN + KG S++
Sbjct: 317 KHGIVVVCSAGNSGPADATAENLAPWHVTVAASTMDRQFPTYVFLGNNITFKGESLSAT- 375
Query: 382 SLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY---DAKIGDAKGQR 438
L FYP+I AK+A+ EDA C+NGT+DP KVKGKI++C +A++ KG++
Sbjct: 376 ILAPKFYPIIKATDAKLASARAEDAVLCQNGTLDPNKVKGKIVVCLRGINARVD--KGEQ 433
Query: 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSIT 498
A AGAVGM+LAN + N + H LP +++N+ DG +V+ YI +T+ PVA +T+ T
Sbjct: 434 AFLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDGSAVFTYINSTKFPVAYITHPKT 493
Query: 499 EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYN 558
+ + + + FS++GPN I P ILKPD+ APGV +IAA+T GP+++ FD RR+P+N
Sbjct: 494 QLDTKPAPFMAAFSSKGPNTIVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIPFN 553
Query: 559 VMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATP 618
+SGTSM+CPHV+GI GL++ L+P WSPAAIKSAIMTTATT D+ P+L+ G KATP
Sbjct: 554 SVSGTSMSCPHVSGIVGLLRALYPTWSPAAIKSAIMTTATTLDNEVEPLLNATDG-KATP 612
Query: 619 FAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIA 678
F+YGAGHV PN A+DPGLVYD DYL +LC LGYN + I +FT+ P++C FS+
Sbjct: 613 FSYGAGHVQPNRAMDPGLVYDTTIDDYLNFLCALGYNATQISVFTE--GPYQCRKKFSLL 670
Query: 679 DFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEE 738
+ NYPSI VP L +GS+TV+RRLKNVG+P TY A + G++ V+P L F GEE
Sbjct: 671 NLNYPSITVPKL-SGSVTVTRRLKNVGSPG-TYIAHVQNPHGITISVKPSILKFKNVGEE 728
Query: 739 LTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
+FK+TF K +YVFG+L+WSDG H V S I VK
Sbjct: 729 KSFKVTF--KAMQGKATNNYVFGKLIWSDGKHYVTSPIVVK 767
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567212|ref|XP_002524587.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223536140|gb|EEF37795.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/764 (54%), Positives = 539/764 (70%), Gaps = 18/764 (2%)
Query: 20 QTPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGR 79
Q P F +KK YVVY G+HSHG+ +S D H+ FLGSFLGS + A IF+SY R
Sbjct: 20 QRPTFASKKSYVVYFGAHSHGAQLSSADQKLVTESHYSFLGSFLGSRDIAEDSIFYSYTR 79
Query: 80 YINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKA 139
+INGF A +E+E A +IA+HP+VVSVFL G LHTT SW FLGLE+D +P +S W KA
Sbjct: 80 HINGFAANIEDEVAAEIAKHPKVVSVFLNRGKKLHTTHSWSFLGLEQDGVVPSNSLWKKA 139
Query: 140 RFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISE 199
R+G+D+IIGNLD+GVWPES+SF+D G GPIP +W+G CQN ++ + CNRKLIG RY ++
Sbjct: 140 RYGQDIIIGNLDTGVWPESKSFSDGGYGPIPSKWRGICQNGSDPYLHCNRKLIGARYFNK 199
Query: 200 GLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPK 259
G +NS+F P D GHGTHTLSTAGG+FV+ S++G+G G AKGGSPK
Sbjct: 200 GYASVVGHLNSTFDSPR------DREGHGTHTLSTAGGNFVAGASVFGLGKGKAKGGSPK 253
Query: 260 ARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFH 319
AR+AAYKVC+ P G N C ADI+A FD AI DGVD++S SLG + + F SVA+GSFH
Sbjct: 254 ARVAAYKVCYPPVGGNECFDADILAAFDTAISDGVDVLSVSLGGEAAQLFNDSVAIGSFH 313
Query: 320 AMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAE 379
A+ HGI+V+ SAGNSGPA+ T N+ PW +TVGAST DREF SYV LGN + KG S+++
Sbjct: 314 AVKHGIVVICSAGNSGPADGTASNLAPWQITVGASTIDREFPSYVVLGNNISYKGESLSK 373
Query: 380 KGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY---DAKIGDAKG 436
K FYPL++ A+ AN S EDA CK G++D +K KGKIL+C +A++ KG
Sbjct: 374 KALPKNKFYPLMSAADARAANASVEDAKLCKAGSLDRKKAKGKILVCLRGVNARVD--KG 431
Query: 437 QRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNS 496
Q+AA+AGAVGM+L N ++ N L VH LP +++NY +G ++ YI +T+ P+A +T
Sbjct: 432 QQAARAGAVGMVLVNDKDSGNEILADVHILPASHLNYTNGVAILNYINSTKYPIAHVTRP 491
Query: 497 ITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVP 556
T + + FS+RGPN I P ILKPD+ APGV IIAA+T GP++E+FD RRV
Sbjct: 492 ETHIGTKPAPFMAAFSSRGPNTITPEILKPDITAPGVSIIAAYTQAAGPTNEDFDTRRVL 551
Query: 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKA 616
+N +SGTSM+CPHV+GI GL+K LHP WSPAAIKSAIMTTA T D+++ PIL+ T KA
Sbjct: 552 FNSVSGTSMSCPHVSGIVGLLKILHPTWSPAAIKSAIMTTAMTRDNNREPILN-ATYSKA 610
Query: 617 TPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPF- 675
PF+YGAGH+ PN A++PGLVYDL DYL +LC LGYN++ I F+Q P+KCP
Sbjct: 611 NPFSYGAGHIRPNQAMEPGLVYDLTANDYLNFLCALGYNETQILSFSQ--APYKCPNKLV 668
Query: 676 SIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKY 735
++A+FNYPSI VP GS+TV+RR+KNVG+P+ TYK I + G+S VEP LNF +
Sbjct: 669 NLANFNYPSITVPKF-KGSITVTRRVKNVGSPSSTYKVSIRKPTGISVSVEPEILNFREI 727
Query: 736 GEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
GEE TFK+T +KG +YVFGEL WSD H V+S I VK
Sbjct: 728 GEEKTFKVT--LKGKKFKARKEYVFGELTWSDSIHRVRSPIVVK 769
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462409|ref|XP_003601486.1| Subtilisin-like protease [Medicago truncatula] gi|355490534|gb|AES71737.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/766 (53%), Positives = 528/766 (68%), Gaps = 22/766 (2%)
Query: 20 QTPAFTAKKPYVVYLGSHSHGSNP-TSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYG 78
TP F K YVVYLGSHSH S +S D NR H+EFLGSFLGS + A IF+SY
Sbjct: 21 HTPTFAEIKSYVVYLGSHSHDSEELSSVDFNRVTDSHYEFLGSFLGSSKTAKESIFYSYT 80
Query: 79 RYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKD-NQIPPDSAWN 137
R+INGF A LEEE A +IA+HP+V+SVF G LHTT SW F+GLE IP S WN
Sbjct: 81 RHINGFAATLEEEVAAEIAKHPKVLSVFENNGRKLHTTHSWGFMGLEDSYGVIPSSSIWN 140
Query: 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYI 197
KARFG+ +II NLD+GVWPES+SF+DEG GPIP +W+G C + + CNRKLIG RY
Sbjct: 141 KARFGDGIIIANLDTGVWPESKSFSDEGFGPIPSKWRGICDKGRDPSFHCNRKLIGARYF 200
Query: 198 SEGLIESCRA-MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGG 256
++G +NSSF P D+ GHG+HTLSTAGG+ V VS++G GYGTAKGG
Sbjct: 201 NKGYASRLTVPLNSSFETPR------DNEGHGSHTLSTAGGNMVPGVSVFGQGYGTAKGG 254
Query: 257 SPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVG 316
SPKAR+A+YKVCW P + C ADI+A FD AIHDGVD++S SLG F SVA+G
Sbjct: 255 SPKARVASYKVCWPPINGDECFDADILAAFDAAIHDGVDVLSVSLGGSASNLFNDSVAIG 314
Query: 317 SFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGAS 376
SFHA GI+VV SAGNSGP + T N+ PW +TVGAST DREF SYV LGN + KG S
Sbjct: 315 SFHAAKKGIVVVCSAGNSGPNDATASNLAPWYITVGASTMDREFPSYVVLGNNLTFKGES 374
Query: 377 IAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY---DAKIGD 433
++ L FYP+I AK+A+ +NEDA C+NGT+DP+KVKGKI++C +A++
Sbjct: 375 LSA-ARLADKFYPIIKATDAKLASATNEDAVLCQNGTLDPKKVKGKIVLCLRGINARVD- 432
Query: 434 AKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASM 493
KG++A AGAVGM+LAN + N + H LP +++N+ DG V+ Y+ ++++PVA +
Sbjct: 433 -KGEQALLAGAVGMVLANDKTTGNEIIADPHVLPASHINFSDGVEVFHYVNSSKSPVAYI 491
Query: 494 TNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPR 553
T+ T+ + + + FS++GPN I P ILKPD+ APGV +IAA+T GP+++EFD R
Sbjct: 492 THPTTKLHTKPAPFMAAFSSKGPNTIIPEILKPDITAPGVSVIAAYTEAEGPTNQEFDNR 551
Query: 554 RVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTG 613
R+ +N +SGTSM+CPH++GI GL+++L+P W+PAAIKSAIMTTATT D+ PI++ T
Sbjct: 552 RIQFNSVSGTSMSCPHISGIVGLLRSLYPSWTPAAIKSAIMTTATTLDNKAEPIMN-ATK 610
Query: 614 QKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPG 673
+ATPF+YGAGHV PNSA+DPGLVYD+ DY +LC LGYN++ + LF+ K P+KC
Sbjct: 611 SQATPFSYGAGHVQPNSAMDPGLVYDITTNDYFNFLCALGYNETQMSLFS--KGPYKCHK 668
Query: 674 PFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFT 733
FSI + NYPSI VPNL +GS+TV+R LKNVG P TY + G++ V+P L F
Sbjct: 669 NFSILNLNYPSITVPNL-SGSVTVTRTLKNVGAPG-TYIVHVQSPSGITISVKPNILEFK 726
Query: 734 KYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
K GEE F++ VK YVFG+++WSDG H VKS + VK
Sbjct: 727 KVGEEKRFEVKLKVKKGK--ATKSYVFGKMIWSDGKHYVKSPLVVK 770
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | ||||||
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.944 | 0.955 | 0.529 | 7.5e-208 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.944 | 0.948 | 0.498 | 2.6e-198 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.950 | 0.928 | 0.473 | 7.6e-183 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.934 | 0.958 | 0.487 | 3.3e-182 | |
| UNIPROTKB|Q0JK21 | 741 | Os01g0702300 "Os01g0702300 pro | 0.868 | 0.914 | 0.444 | 8.8e-150 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.895 | 0.923 | 0.427 | 2.6e-143 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.915 | 0.921 | 0.409 | 6.8e-143 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.893 | 0.912 | 0.419 | 3.7e-142 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.928 | 0.942 | 0.397 | 7.8e-142 | |
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.801 | 0.791 | 0.426 | 1.5e-140 |
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2010 (712.6 bits), Expect = 7.5e-208, P = 7.5e-208
Identities = 399/754 (52%), Positives = 506/754 (67%)
Query: 30 YVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLE 89
YVVY G+HSH T ++R + H++FLGSF GS E A IF+SY ++INGF A L+
Sbjct: 32 YVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHLD 91
Query: 90 EEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGN 149
+ A +I++HPEVVSVF + + LHTTRSW+FLGLE ++ +P S W KARFGED II N
Sbjct: 92 HDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIAN 151
Query: 150 LDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMN 209
LD+GVWPES+SF DEG+GPIP RW+G CQN + CNRKLIG RY ++G + +N
Sbjct: 152 LDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKLIGARYFNKGYAAAVGHLN 211
Query: 210 SSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269
SSF P +L +GHG+HTLSTA G FV VS++G G GTAKGGSP+AR+AAYKVCW
Sbjct: 212 SSFDSPRDL------DGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVCW 265
Query: 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVA 329
P N C AD++A FD AIHDG D+IS SLG +P F SVA+GSFHA I+VV
Sbjct: 266 PPVKGNECYDADVLAAFDAAIHDGADVISVSLGGEPTSFFNDSVAIGSFHAAKKRIVVVC 325
Query: 330 SAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYP 389
SAGNSGPA+ TV NV PW +TVGAST DREF+S + LGN KG S++ FYP
Sbjct: 326 SAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTALPHAKFYP 385
Query: 390 LIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDA-KGQRAAQAGAVGMI 448
++A AK N S DA CK G++DP K KGKIL+C + G KG+ A G +GM+
Sbjct: 386 IMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLRGQNGRVEKGRAVALGGGIGMV 445
Query: 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508
L N+ N L H LP + KD +V YI T+ P+A +T S T+ + +
Sbjct: 446 LENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLGLKPAPVM 505
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS++GP+++ P ILKPD+ APGV +IAA+T P++E+FDPRR+ +N +SGTSM+CP
Sbjct: 506 ASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRLLFNAISGTSMSCP 565
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
H++GIAGL+KT +P WSPAAI+SAIMTTAT D PI T KATPF++GAGHV P
Sbjct: 566 HISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPI-QNATNMKATPFSFGAGHVQP 624
Query: 629 NSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGP-FSIADFNYPSIAV 687
N A++PGLVYDLG DYL +LC LGYN S I +F+ F C P S+ + NYPSI V
Sbjct: 625 NLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGNN--FTCSSPKISLVNLNYPSITV 682
Query: 688 PNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITF-S 746
PNL + +TVSR +KNVG P+ Y ++ GV V+P +LNFTK GE+ TFK+
Sbjct: 683 PNLTSSKVTVSRTVKNVGRPSM-YTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKVILVK 741
Query: 747 VKGNDKPVATDYVFGELVWSDGFHNVKSTIAVKL 780
KGN VA YVFGELVWSD H V+S I VKL
Sbjct: 742 SKGN---VAKGYVFGELVWSDKKHRVRSPIVVKL 772
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1920 (680.9 bits), Expect = 2.6e-198, P = 2.6e-198
Identities = 382/766 (49%), Positives = 513/766 (66%)
Query: 21 TPAFTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRY 80
+PAF KK Y+VYLGSH+H +S ++ H FL SF+GS E A IF+SY R+
Sbjct: 33 SPAFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRH 92
Query: 81 INGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKAR 140
INGF A+L+E A +IA+HP+VVSVF +G LHTT SW F+ L K+ + S WNKA
Sbjct: 93 INGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAG 152
Query: 141 FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEG 200
+GED II NLD+GVWPES+SF+DEG G +P RW+G C D + CNRKLIG RY ++G
Sbjct: 153 YGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKD----VPCNRKLIGARYFNKG 208
Query: 201 -LIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPK 259
L + N+S+ T DH+GHG+HTLSTA G+FV +++G+G GTA GGSPK
Sbjct: 209 YLAYTGLPSNASY------ETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPK 262
Query: 260 ARLAAYKVCWKP-NGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSF 318
AR+AAYKVCW P +GA C ADI+A + AI DGVD++SAS+G ++ +A+GSF
Sbjct: 263 ARVAAYKVCWPPVDGAE-CFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIGSF 321
Query: 319 HAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIA 378
HA+ +G+ VV SAGNSGP TV NV PWV+TVGAS+ DREF ++V L N KG S++
Sbjct: 322 HAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTSLS 381
Query: 379 EKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY---DAKIGDAK 435
K + Y LI+ A VAN + DA CK G++DP+KVKGKIL+C +A++ K
Sbjct: 382 -KPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVD--K 438
Query: 436 GQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTN 495
G +AA AGA GM+L N + N ++ H LP + ++YKDG+++++Y+ +T++P +
Sbjct: 439 GMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKA 498
Query: 496 SITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRV 555
N + + FS+RGPN I P ILKPD+ APGV+IIAAFT GP+ + D RR
Sbjct: 499 PTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRT 558
Query: 556 PYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQK 615
P+N SGTSM+CPH++G+ GL+KTLHP WSPAAI+SAIMTT+ T ++ + P++D+ + +K
Sbjct: 559 PFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDE-SFKK 617
Query: 616 ATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPF 675
A PF+YG+GHV PN A PGLVYDL GDYL +LC +GYN +++ LF + + + C
Sbjct: 618 ANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQ-YTCRQGA 676
Query: 676 SIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKY 735
++ DFNYPSI VPNL GS+TV+R+LKNVG P TY A+ E +GV VEP L F K
Sbjct: 677 NLLDFNYPSITVPNLT-GSITVTRKLKNVGPPA-TYNARFREPLGVRVSVEPKQLTFNKT 734
Query: 736 GEELTFKITFSVKGNDKPVA-TDYVFGELVWSDGFHNVKSTIAVKL 780
GE F++T PV + YVFGEL W+D H V+S I V+L
Sbjct: 735 GEVKIFQMTL----RPLPVTPSGYVFGELTWTDSHHYVRSPIVVQL 776
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
Identities = 363/767 (47%), Positives = 479/767 (62%)
Query: 27 KKPYVVYLGSHSHGSN---PTSHDIN------RARIKHHEFLGSFLGSVEEAAGLIFHSY 77
K+ YVVYLG H+HG + D++ +A H E L LG E+A IF+SY
Sbjct: 37 KQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAREAIFYSY 96
Query: 78 GRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWN 137
R+INGF A L+ A +IA P VVSVF G LHTTRSW+FLGL P +AW
Sbjct: 97 TRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAPTGAAWK 156
Query: 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYI 197
KARFGED IIGNLD+GVWPES+SF D+G+GPIP W+G CQ + A +CNRKLIG R+
Sbjct: 157 KARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKLIGARFF 216
Query: 198 SEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGS 257
++G + +N+S T D +GHGTHTLSTAGG+ V+ S++G G GTA GGS
Sbjct: 217 NKGYASAVGNLNTSLF-----DTPRDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGGS 271
Query: 258 PKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGS 317
P AR+AAY+VC+ P + C ADI+A FD AIHDGV ++S SLG ++F +A+GS
Sbjct: 272 PMARVAAYRVCYTPVNGSECFDADILAAFDAAIHDGVHVLSVSLGGDAGDYFADGLAIGS 331
Query: 318 FHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377
FHA+ HGI VV SAGNSGPA TV NV PW+ T AST DREF +YV N +KG S+
Sbjct: 332 FHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDREFPAYVVF-NDTKLKGQSL 390
Query: 378 AEKG-SLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY-DAKIGDAK 435
+ S +P+I A N + ++ C G++DPEKVKGKI++C K
Sbjct: 391 SASALSPASSSFPMIDSSLAASPNRTQNESQLCFLGSLDPEKVKGKIVVCLRGVNPRVEK 450
Query: 436 GQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTN 495
G+ +AG GM+LAN N + H LP ++ + DGQ +++Y+ NT++P ++T
Sbjct: 451 GEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSDGQILFSYLKNTKSPAGTITR 510
Query: 496 SITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRV 555
T + + FS++GPN + P ILKPD+ APGV ++AA+T P+ FD RRV
Sbjct: 511 PETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSVVAAWTRASAPTDLAFDKRRV 570
Query: 556 PYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQK 615
+N SGTSM+CPHVAG+ GL++TL PDWSPAAI+SA+MTTA D+ +H IL+ +
Sbjct: 571 AFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVDNERHAILNS-SFAA 629
Query: 616 ATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQP--KEPFKCPG 673
A PF +GAGHV+P A++PGLVYDL DYL +LC L YN +++ +F PF+CP
Sbjct: 630 ANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNATVMAMFAGGGGAAPFRCPA 689
Query: 674 -PFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNF 732
P + D NYPSI V NL + S TV R +KNVG P YKA +T GV V P TL F
Sbjct: 690 SPPKVQDLNYPSITVVNLTS-SATVRRTVKNVGKPG-VYKAYVTSPAGVRVTVSPDTLPF 747
Query: 733 TKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVK 779
GE+ TF++ F V + +A DY FG LVW++G V+S + VK
Sbjct: 748 LLKGEKKTFQVRFEV--TNASLAMDYSFGALVWTNGKQFVRSPLVVK 792
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
Identities = 371/761 (48%), Positives = 483/761 (63%)
Query: 29 PYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVL 88
PY+VYLGSH +G + ++ + RA HH+ LGS LGS + A I +SY + INGF A L
Sbjct: 18 PYIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHL 77
Query: 89 EEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIG 148
EEE A QIARHP+VV+V + LHTTRSW+F+ +E+D QI PDS W RFG+DVII
Sbjct: 78 EEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGRFGQDVIIA 137
Query: 149 NLDSGVWPESQSFTDEGM-GPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRA 207
NLDSGVWPES SFTDE + G +P RW+G+C + ++CN+KLIG RY ++ ++
Sbjct: 138 NLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNKDML----- 192
Query: 208 MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKV 267
+++ V N S D GHGTHTLSTAGG FV SL+G GTAKGG+P+AR+AAYKV
Sbjct: 193 LSNPGAVDGNW--SRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKV 250
Query: 268 CWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK-P----KEHFESSVAVGSFHAMM 322
CW +G C AAD++AGF+ AIHDG D+IS S G P + V +GS HA M
Sbjct: 251 CW--SGE--CAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAM 306
Query: 323 HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382
+G+ VV SAGNSGP E TV N PWV TV AST DR+F + VTLGN + G S+
Sbjct: 307 NGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSLETTTL 366
Query: 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGD----AKGQR 438
+ Y +I A +A+ A+ C GT+DPEKVK KI++C + GD KG
Sbjct: 367 HSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVC--VRGGDIPRVTKGMT 424
Query: 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSIT 498
AG GMILAN D + + H LP + Y + S+Y Y+ +++NPVA+++ S T
Sbjct: 425 VLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSKT 484
Query: 499 EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYN 558
E S + FS+RGP+ P +LKPD+ APGVDI+AAFT P+ D RR Y
Sbjct: 485 EVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEYA 544
Query: 559 VMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATP 618
++SGTSMACPH++G+ GL+K P+WSPAA++SAIMTTA T+D++ P+ D G++AT
Sbjct: 545 ILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDH-DGREATA 603
Query: 619 FAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFS-I 677
FA+GAG+++PN A+DPGLVYDL DY +LC +G+N S DL F CP +
Sbjct: 604 FAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSS--DLAKLSAGNFTCPEKVPPM 661
Query: 678 ADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGE 737
D NYPSI VP L + S TV+RRLK VG P TY+A GV+ VEP L F K GE
Sbjct: 662 EDLNYPSIVVPALRHTS-TVARRLKCVGRPA-TYRATWRAPYGVNMTVEPAALEFGKDGE 719
Query: 738 ELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAV 778
FK+TF + DK + YVFG LVWSDG H+V+S + V
Sbjct: 720 VKEFKVTFKSE-KDK-LGKGYVFGRLVWSDGTHHVRSPVVV 758
|
|
| UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
Identities = 317/713 (44%), Positives = 430/713 (60%)
Query: 88 LEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAW-NKARFGEDVI 146
++E I + P V++V + +HTTRSW+FL LE++ AW + A++G D I
Sbjct: 39 IDESFVGVIKQLPGVLAVIPDVLHKVHTTRSWDFLELERNGAAT--GAWKDAAKYGVDAI 96
Query: 147 IGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCR 206
IGN+D+GVWPES SF D+G +P RW+G C + CN KLIG + + G + S
Sbjct: 97 IGNVDTGVWPESASFKDDGYS-VPSRWRGKCITGNDTTFKCNNKLIGAGFFNLGFLASGL 155
Query: 207 AMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYK 266
L T D+ GHGTHTLSTAGG FV + S++G G GTAKGGSP AR+AAYK
Sbjct: 156 LQGKPPSQAAELYTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAAYK 215
Query: 267 VCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGIL 326
C+ A C+++DI+A A+ DGV+++S S+G ++ +A+G+F+A+ G++
Sbjct: 216 ACY----AEGCSSSDILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFYAVQKGVI 271
Query: 327 VVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLG---NKMVIKGASIAEKGSL 383
VV SA NSGP +V NV PW+LTVGAST DR+F +YVT G + M IKG S++ +L
Sbjct: 272 VVCSASNSGPQPGSVTNVAPWILTVGASTMDRDFPAYVTFGGVTSSMTIKGQSLSNS-TL 330
Query: 384 TQ-DFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILIC---YDAKIGDAKGQRA 439
Q Y +I + A ANV +E++T C G++D +KV+GKI++C +A++ KG
Sbjct: 331 PQGQRYAMINAKNANAANVPSENSTLCFPGSLDSDKVRGKIVVCTRGVNARV--EKGLVV 388
Query: 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITE 499
QAG VGM+L N + + H + A+V+Y +++ Y+ +T+NPV +T S
Sbjct: 389 KQAGGVGMVLCNYAGNGEDVIADPHLIAAAHVSYSQCINLFNYLGSTDNPVGYITASDAR 448
Query: 500 FNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNV 559
+ + + FS+RGPN I P ILKPD+ APGV +IAA++ P+ FD RRVPYN+
Sbjct: 449 LGVKPAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRVPYNI 508
Query: 560 MSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPF 619
MSGTSM+CPHV+GI GL+KT +PDW+PA IKSAIMTTA T D+ I D+ TG ATPF
Sbjct: 509 MSGTSMSCPHVSGIVGLIKTKYPDWTPAMIKSAIMTTAITGDNDSGKIRDE-TGAAATPF 567
Query: 620 AYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDL--FTQPKEPFKCPGPFSI 677
AYG+GHV ALDPGLVYD DY +LC L Q+ + L F +P C
Sbjct: 568 AYGSGHVRSVQALDPGLVYDTTSADYADFLCALRPTQNPLPLPVFGDDGKPRACSQGAQY 627
Query: 678 A---DFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITE-IVGVSAVVEPITLNFT 733
D NYPSIAVP L +GS TV RR+KNVG C Y +TE + GV V P L+F
Sbjct: 628 GRPEDLNYPSIAVPCL-SGSATVRRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFE 686
Query: 734 KYGEELTFKITFSVKGNDKPVATDYVFGELVWS-------DGFHNVKSTIAVK 779
YGEE F + V+ D A +YVFG + WS D H V+S I K
Sbjct: 687 SYGEEREFTVRLEVQ--DAAAAANYVFGSIEWSEESESDPDRKHRVRSPIVAK 737
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 313/732 (42%), Positives = 435/732 (59%)
Query: 55 HHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLH 114
H + S L S+ ++A L++ +Y I+GF L +E A + P V+SV E +LH
Sbjct: 48 HSNWYDSSLRSISDSAELLY-TYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TTR+ FLGL++ + +A DV++G LD+GVWPES+S++DEG GPIP W+
Sbjct: 107 TTRTPLFLGLDEHTA----DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWK 162
Query: 175 GTCQNDTN-KAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLS 233
G C+ TN A CNRKLIG R+ + G + ++ S + + D +GHGTHT S
Sbjct: 163 GGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDES----KESRSPRDDDGHGTHTSS 218
Query: 234 TAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293
TA GS V SL G GTA+G +P+AR+A YKVCW G C ++DI+A D AI D
Sbjct: 219 TAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWL--GG--CFSSDILAAIDKAIADN 274
Query: 294 VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
V+++S SLG +++ VA+G+F AM GILV SAGN+GP+ ++ NV PW+ TVGA
Sbjct: 275 VNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGA 334
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLI-AGEAAKVANVSNEDATQCKNG 412
T DR+F + LGN G S+ + +L P I AG A+ N C G
Sbjct: 335 GTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATN-----GNLCMTG 389
Query: 413 TIDPEKVKGKILICYDAKIGDA--KGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAY 470
T+ PEKVKGKI++C D I KG AG VGMILAN+ + + H LP
Sbjct: 390 TLIPEKVKGKIVMC-DRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATT 448
Query: 471 VNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIA 530
V K G + Y+ NP AS++ T S + + FS+RGPN I P ILKPD+IA
Sbjct: 449 VGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIA 508
Query: 531 PGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIK 590
PGV+I+AA+T GP+ D RRV +N++SGTSM+CPHV+G+A L+K++HP+WSPAAI+
Sbjct: 509 PGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIR 568
Query: 591 SAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLC 650
SA+MTTA P+LD TG+ +TPF +GAGHV+P +A +PGL+YDL DYL +LC
Sbjct: 569 SALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLC 628
Query: 651 GLGYNQSIIDLFTQPKEPFKC-PGP-FSIADFNYPSIAVPNLVN-GSMTVSRRLKNVGTP 707
L Y I + + + C P +S+AD NYPS AV N+ G+ +R + +VG
Sbjct: 629 ALNYTSPQIRSVS--RRNYTCDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGA 685
Query: 708 TCTYKAQIT-EIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWS 766
TY ++T E GV VEP LNF + E+ ++ +TF+V + KP ++ FG + WS
Sbjct: 686 G-TYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSS-KPSGSNS-FGSIEWS 742
Query: 767 DGFHNVKSTIAV 778
DG H V S +A+
Sbjct: 743 DGKHVVGSPVAI 754
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 317/775 (40%), Positives = 458/775 (59%)
Query: 28 KPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSV---------EEAAGLIFHSYG 78
K Y+V + + P+S D +HE+ S + SV ++A+ I ++Y
Sbjct: 32 KTYIVQMAA---SEMPSSFDF------YHEWYASTVKSVSSSQLEDEEDDASTRIIYNYE 82
Query: 79 RYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGL--EKDNQIPPDSAW 136
+GF A L+EE A+ +A V++V E + LHTTRS +FLG+ E N+I W
Sbjct: 83 TAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGPEVSNRI-----W 137
Query: 137 NKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAIT---CNRKLIG 193
+ + DV++G LD+G+WPES SF+D+G+GP+P +W+G CQ T + T CNRK++G
Sbjct: 138 SDSLADHDVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQ--TGRGFTTANCNRKIVG 195
Query: 194 IRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTA 253
R G S +N + L + D +GHGTHT +TA GS V + +LYG G A
Sbjct: 196 ARIFYNGYEASSGPINET----TELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVA 251
Query: 254 KGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSV 313
+G +P+AR+AAYKVCW A C ++DI+A D A+ DGVD++S SLG ++ S+
Sbjct: 252 RGMAPRARVAAYKVCW----AGGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSL 307
Query: 314 AVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIK 373
++ SF AM G+ V SAGN+GP ++ N+ PW+ TVGAST DR+F + VTLGN I
Sbjct: 308 SIASFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANIT 367
Query: 374 GASIAEKG--SLT-QDFYPLI-AGEAAKVANVSNEDATQ-CKNGTIDPEKVKGKILICYD 428
G S+ KG +L+ Q+ YP++ G N S D C GT+ P V GKI+IC D
Sbjct: 368 GVSLY-KGLRNLSPQEQYPVVYLG-----GNSSMPDPRSLCLEGTLQPHDVSGKIVIC-D 420
Query: 429 AKIGDA--KGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNT 486
I KGQ +AG +GMILAN+ + + H LP V +G + +Y +
Sbjct: 421 RGISPRVQKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSA 480
Query: 487 ENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPS 546
P A+++ T+ S + + FS+RGPN++ ILKPDV+APGV+I+AA++ + PS
Sbjct: 481 PKPTATLSFGGTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPS 540
Query: 547 HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHP 606
D RRV +N++SGTSM+CPHVAG+A L+K HPDWSPA IKSA+MTTA D++ P
Sbjct: 541 SLSSDSRRVGFNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRP 600
Query: 607 ILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPK 666
+ D TG+ +TPF +GAGH++P AL PGLVYD+G DYL +LC + FT+
Sbjct: 601 MKDAATGKASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNS 660
Query: 667 EPFKCPGPFSIA-DFNYPSIAV--PNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSA 723
C FS A D NYP+I+V + + ++TV R + NVG P+ TY ++T+ G
Sbjct: 661 N-MTCRHTFSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADV 719
Query: 724 VVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAV 778
+VEP TL+F ++L++K+T + K K A + FG L WSDG H V+S + +
Sbjct: 720 IVEPNTLHFVSTNQKLSYKVTVTTKAAQK--APE--FGALSWSDGVHIVRSPVVL 770
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
Identities = 312/744 (41%), Positives = 441/744 (59%)
Query: 55 HHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLH 114
H E+ G+ L SV AG + ++Y ++GF A L A+ +A V++V E +LH
Sbjct: 43 HGEWYGASLRSVS-GAGKMLYAYDTVLHGFSARLTAREARDMAAMDGVLAVNPEARYELH 101
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TTR+ EFLG+ ++ + P S DV++G LD+GVWPES+S+ D G+G +P W+
Sbjct: 102 TTRTPEFLGIAGNDGLFPQSGT-----AGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWK 156
Query: 175 GTCQNDTN-KAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLS 233
G C T + CNRKL+G R+ + G E+ AM E+ + D +GHGTHT S
Sbjct: 157 GECMAGTGFNSSACNRKLVGARFFNRGY-EA--AMGPMDTTRESRSPR-DDDGHGTHTSS 212
Query: 234 TAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293
TA G+ VS SL G GTA+G +P+AR+A YKVCW G C ++DI+AG D A+ DG
Sbjct: 213 TAAGAAVSGASLLGFASGTARGMAPRARVAVYKVCWL--GG--CFSSDILAGMDAAVADG 268
Query: 294 VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
++S SLG ++ SVA+G+F AM +LV SAGN+GP T+ NV PW+ TVGA
Sbjct: 269 CGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLSNVAPWITTVGA 328
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQ-CKNG 412
T DR+F +YV+LGN G S+ +L P++ AN SN A C G
Sbjct: 329 GTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTPLPIVYA-----ANASNSTAGNLCMPG 383
Query: 413 TIDPEKVKGKILICYDAKIGDA--KGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAY 470
T+ PEKV GKI++C D + KG AG GM+L+N+ + + H LP A
Sbjct: 384 TLTPEKVAGKIVVC-DRGVSARVQKGFVVRDAGGAGMVLSNTATNGEELVADAHLLPAAG 442
Query: 471 VNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIA 530
V K+G ++ AY+ + +P A++ + T+ + S + + FS+RGPN++ P ILKPD+IA
Sbjct: 443 VGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLTPEILKPDIIA 502
Query: 531 PGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIK 590
PGV+I+AA+T + GP+ D RRV +N++SGTSM+CPHV+G+A L+++ HP+WSPAA++
Sbjct: 503 PGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPEWSPAAVR 562
Query: 591 SAIMTTATTEDSSK---HPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLA 647
SA+MTTA + + +P+LD TG ATPF YGAGHV+P SA+DPGLVYDLG DY+
Sbjct: 563 SALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDLGTADYVD 622
Query: 648 YLCGLGYNQSIIDLFTQPKEPFKCP-GP-FSIADFNYPSIAVPNLVNGSM---------- 695
+LC L Y ++I + K + C G +S+ + NYPS AV S
Sbjct: 623 FLCALNYTSTMIAAVARSKS-YGCTEGKAYSVYNLNYPSFAVAYSTASSQAAESSGAAAT 681
Query: 696 TVSRR--LKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKP 753
TV+ R L NVG TYK + GV+ VEP L FT GE+ ++ ++F+ K
Sbjct: 682 TVTHRRTLTNVGAAG-TYKVSAAAMPGVAVAVEPTELAFTSAGEKKSYTVSFTAKSQPSG 740
Query: 754 VATDYVFGELVWSDGFHNVKSTIA 777
A FG LVWSDG H+V S +A
Sbjct: 741 TAG---FGRLVWSDGKHSVASPMA 761
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 302/760 (39%), Positives = 430/760 (56%)
Query: 30 YVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLE 89
Y+VY+G HG P + A HH L + LGS + A I +SY +GF AVL
Sbjct: 27 YIVYMGERHHGLRPEL--VQEA---HHGMLAAVLGSEQAAMDAILYSYRHGFSGFAAVLT 81
Query: 90 EEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSA-WNKARFGEDVIIG 148
A +++ P VV V +DLHTTRSW+F+G+ N P ++RFGED IIG
Sbjct: 82 GGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGV---NPSPSGGGILLESRFGEDSIIG 138
Query: 149 NLDSGVWPESQSFTDEGMGPIPDRWQGTC-QNDTNKAITCNRKLIGIRYISEGLIESCRA 207
LD+G+WPES SF D+G+G +P RW+G C + A CNRK+IG ++ +G
Sbjct: 139 VLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYGK 198
Query: 208 MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKV 267
MN+S + ++ D GHGTHT STA G+ V+N S G+ G A+GG+ +ARLA YKV
Sbjct: 199 MNTSDIY--EFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKV 256
Query: 268 CWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPK--EHFESSVAVGSFHAMMHGI 325
CW C AADI+A FD AIHDGVD+IS SLG P + + +++GSFHA+ G+
Sbjct: 257 CWATGD---CTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGV 313
Query: 326 LVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQ 385
+VV SAGNSGP +TV N PW++TV A T DR F + + LGN G ++ G
Sbjct: 314 VVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYS-GKHPS 372
Query: 386 DFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKG---QRAAQA 442
++ E N + DA C G+++ VKG +++C+ + + + +A
Sbjct: 373 KSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKKA 432
Query: 443 GAVGMILANS-REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFN 501
VG+I A +D SL+ +P V+Y+ G ++ AY + NPVA + T
Sbjct: 433 RGVGVIFAQFLTKDIASSLD----IPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVG 488
Query: 502 KIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMS 561
++ + ++FS+RGP+ + P+ILKPD+ APGV+I+AA++ S V + + S
Sbjct: 489 ELVAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSAIGS---VNFKIDS 545
Query: 562 GTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQK-ATPFA 620
GTSM+CPH++G+ L+K++HP+WSPAA+KSA++TTA D+ ++ + A PF
Sbjct: 546 GTSMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFD 605
Query: 621 YGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPGPFSIADF 680
YG GHVNPN A PGLVYD+G DY+ +LC +GYN S I TQ + + P S +
Sbjct: 606 YGGGHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQHT-PKSQLNL 664
Query: 681 NYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELT 740
N PSI +P L G +TVSR + NVG Y+A++ GV V P L F +L
Sbjct: 665 NVPSITIPEL-RGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLP 723
Query: 741 FKITFSVKGNDKPVATDYVFGELVWSDGFHNVKSTIAVKL 780
FK+TF K V Y FG L W DG H V+ + V++
Sbjct: 724 FKVTFQAK---LKVKGRYTFGSLTWEDGTHTVRIPLVVRI 760
|
|
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
Identities = 282/661 (42%), Positives = 374/661 (56%)
Query: 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTN-KAITCNRKLIGIRY 196
KA+ G+ +I+G LDSGVWPES+SF D+GMGP+P W+G CQ + CNRK+IG RY
Sbjct: 147 KAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSHCNRKIIGARY 206
Query: 197 ISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVS-LYGMGYGTAKG 255
+G A N++ ++ + D +GHG+HT STA G V S L G G+A G
Sbjct: 207 YVKGYERYYGAFNAT--ANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGGFAKGSASG 264
Query: 256 GSPKARLAAYKVCW-KPNG----ANLCNAADIIAGFDVAIHDGVDIISASLGS-KPKEHF 309
G+P ARLA YK CW KPN N+C D++A D AI DGV +IS S+G+ +P
Sbjct: 265 GAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIGTTEPFPFT 324
Query: 310 ESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNK 369
+ +A+G+ HA+ I+V ASAGNSGP T+ N+ PW++TVGAST DR F + LGN
Sbjct: 325 QDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFVGGLVLGNG 384
Query: 370 MVIKGASIAEKGSLTQD-FYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICY- 427
IK SI + D F PL+ V ++ + +QC ++ PE V GK+++C
Sbjct: 385 YTIKTDSIT---AFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKVVLCLR 441
Query: 428 --DAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYN 485
++IG KG +AG GMIL N + N + HF+PTA V + YI
Sbjct: 442 GAGSRIG--KGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEYIKT 499
Query: 486 TENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGP 545
+NP A + T + + + FS+RGPN++DP ILKPD+ APG+ I+AA++ P
Sbjct: 500 DKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGADSP 559
Query: 546 SHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKH 605
S D R YN+ SGTSM+CPHVAG L+K +HP WS AAI+SA+MTTA + K
Sbjct: 560 SKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTNDKKK 619
Query: 606 PILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQP 665
PI D TG A PFA G+GH P A DPGLVYD YL Y C + N + ID P
Sbjct: 620 PIQD-TTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSV--NITNID----P 672
Query: 666 KEPFKCPGPFSIA-DFNYPSIAVPNLVNGSMTVSRRLKNVGT--PTCTYKAQITEIVGVS 722
FKCP + NYPSIAVPNL ++TV R + NVGT T TY + G+S
Sbjct: 673 T--FKCPSKIPPGYNHNYPSIAVPNLKK-TVTVKRTVTNVGTGNSTSTYLFSVKPPSGIS 729
Query: 723 AVVEPITLNFTKYGEELTFKITFSVKGNDKPVATD---YVFGELVWSDGFHNVKSTIAVK 779
P L+F + G++ FKI N AT+ Y FG W+D H V+S IAV
Sbjct: 730 VKAIPNILSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVS 789
Query: 780 L 780
L
Sbjct: 790 L 790
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 781 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-101 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 4e-34 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 5e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-25 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-19 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-18 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 8e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-16 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-15 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 9e-15 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 4e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-13 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-10 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 5e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-08 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 5e-08 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-07 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 9e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 9e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-06 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 3e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 6e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 4e-05 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 6e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 9e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-04 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 1e-04 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 2e-04 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 3e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-04 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 9e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 0.001 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 0.001 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.001 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 0.002 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.002 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.002 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-101
Identities = 116/244 (47%), Positives = 141/244 (57%), Gaps = 12/244 (4%)
Query: 113 LHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDR 172
LHTTRS +FLGL S A GE +IIG LD+G+WPE SF D G GP P
Sbjct: 3 LHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHT 59
Query: 173 WQGTCQ-NDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHT 231
W G C + +CN KLIG RY S+G A E + D++GHGTHT
Sbjct: 60 WPGDCVTGEDFNPFSCNNKLIGARYFSDGY----DAYGGFNSDGEYRSP-RDYDGHGTHT 114
Query: 232 LSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291
STA G+ V N S+ G +GTA G +P+AR+A YKVCW G C +DI+A D AI
Sbjct: 115 ASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG---CFGSDILAAIDQAIA 171
Query: 292 DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTV 351
DGVD+IS S+G + +E +A+ HA+ GI V ASAGNSGP TV NV PWV TV
Sbjct: 172 DGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTV 231
Query: 352 GAST 355
AST
Sbjct: 232 AAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 4e-34
Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Query: 524 LKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD 583
LKPD+ APGVDI+AA+T + D R + +SGTSMA PHVAG+A L+K+ HPD
Sbjct: 236 LKPDIAAPGVDILAAWT---PEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 584 WSPAAIKSAIMTTAT 598
WSPAAIKSA+MTTA
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-30
Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGK 422
VTLGN I G S+ YPL+ K AN + DA+ C G++DP KVKGK
Sbjct: 1 VVTLGNGKTIVGQSLY---PGNLKTYPLVY----KSANSGDVDASLCLPGSLDPSKVKGK 53
Query: 423 ILICYDAKIGD--AKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVY 480
I++C AKG AG GMILAN D + H LP +V+Y+DG ++
Sbjct: 54 IVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAIL 113
Query: 481 AYIYNTENPVAS 492
+YI +T NP A+
Sbjct: 114 SYINSTSNPTAT 125
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 50/128 (39%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTN-EYGPSHEEFDPRRVPYNVMSGT 563
+ S+RGP + +KPD++APGVDI++ G Y MSGT
Sbjct: 189 ADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSGTG------------YARMSGT 235
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
SMA PHVAG A L+K HPDWSPA IK+A+M TA S G GA
Sbjct: 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGA 287
Query: 624 GHVNPNSA 631
G V+ A
Sbjct: 288 GRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNG 273
P ++ D GHGTH G G+ GT KG +PKA L AYKV
Sbjct: 51 SPLGDASAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKADLYAYKVL---GP 99
Query: 274 ANLCNAADIIAGFDVAIHDGVDIISASLGSK-PKEHFESSVAVGSFHAMMHGILVVASAG 332
IIA + A+ DG+D+I+ SLGS ++A+ + A+ G++VVA+AG
Sbjct: 100 GGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--AVKAGVVVVAAAG 157
Query: 333 NSGPAEKTVDN--VPPWVLTVGASTT 356
NSGPA T+ + P +TVGAST
Sbjct: 158 NSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 490 VASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEE 549
V ++ ++ + I S+FS+RGP +KPDV+APG +I++ S
Sbjct: 167 VGAVDDNGPHDDGI-----SYFSSRGPTG--DGRIKPDVVAPGENIVSC------RSPGG 213
Query: 550 FDPRRVP--YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
V Y MSGTSMA PHV+G L+ +P +P +K + TAT
Sbjct: 214 NPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
TT D NGHGTH GS G KG +P A L KV +G+ +
Sbjct: 38 TTPYDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVGVKV-LDDSGS--GS 87
Query: 279 AADIIAGFD--VAIHD--GVDIISASLGSKPKEHFESSVAVGSFHAMMH----GILVVAS 330
+DIIAG D V ++ + +++ SLG+ P + A+ GI+VV +
Sbjct: 88 ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC---QAVERLWDAGIVVVVA 144
Query: 331 AGNSGPAEKTVDNVP---PWVLTVGASTTDREFSSYVT 365
AGNSGP T+ P P V+TVGA + ++
Sbjct: 145 AGNSGPGPGTI-TSPGNSPKVITVGAVDDNGPHDDGIS 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 8e-17
Identities = 53/173 (30%), Positives = 70/173 (40%), Gaps = 24/173 (13%)
Query: 199 EGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSP 258
+GL N T D NGHGTH S + G G +P
Sbjct: 18 DGLFGGGDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAP 68
Query: 259 KARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-GVDIISASLGS---KPKEHFESSVA 314
A+L KV G +++DI A D A D G D+I+ SLG P ++
Sbjct: 69 GAKLIPVKVLD---GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID 125
Query: 315 VGSFHAM-MHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTDREFSSY 363
+A+ G+LVVA+AGN GP T P P V+ VGA D +S
Sbjct: 126 ----YALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASP 174
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 6e-16
Identities = 36/83 (43%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 515 GPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIA 574
P+ KPDV APGVD+ +A G Y +SGTSMA PHVAG+A
Sbjct: 180 APDSPPDEYTKPDVAAPGVDVYSARQGANGDGQ---------YTRLSGTSMAAPHVAGVA 230
Query: 575 GLVKTLHPDWSPAAIKSAIMTTA 597
L+ HPD SP IK A+ TA
Sbjct: 231 ALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLC-NAA 280
D NGHGTH + G +P+A L A KV + +
Sbjct: 37 QDGNGHGTHVAGIIAALDNGVGVV---------GVAPEADLYAVKVL----NDDGSGTYS 83
Query: 281 DIIAGFDVAIHDGVDIISASLG-SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK 339
DIIAG + AI +G+DII+ SLG A+ +A GILVVA+AGNSG +
Sbjct: 84 DIIAGIEWAIENGMDIINMSLGGPSDSPALRE--AIKKAYA--AGILVVAAAGNSGNGDS 139
Query: 340 TVDNVP---PWVLTVGASTTDRE---FSSY 363
+ D P P V+ VGA ++ FSS
Sbjct: 140 SYD-YPAKYPSVIAVGAVDSNNNRASFSST 168
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 9e-15
Identities = 51/226 (22%), Positives = 77/226 (34%), Gaps = 54/226 (23%)
Query: 391 IAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILA 450
+AG A AN + P KV + I A A A ++
Sbjct: 50 VAGIIAASANNG-GGVGVAPGAKLIPVKVLDGDGSGSSSDI--AAAIDYAAADQGADVI- 105
Query: 451 NSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTEN--PVASMTNSITEFNKIWS--- 505
N+SL P++ + Y VA+ N +
Sbjct: 106 ------NLSLGGPGSPPSSAL-----SEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPA 154
Query: 506 ---------------RMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEF 550
S S G D+ APG DI+++ T G
Sbjct: 155 ASPNVIAVGAVDRDGTPASPSSNGGA--------GVDIAAPGGDILSSPTTGGGG----- 201
Query: 551 DPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596
Y +SGTSMA P VAG+A L+ + +PD +PA +K+A+++T
Sbjct: 202 ------YATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 485 NTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYG 544
+ NP S + + SF S RGP +KPD++APG I++A + G
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSS-RGPT--YDGRIKPDLVAPGTGILSARSGGGG 235
Query: 545 PSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV----------KTLHPDWSPAAIKSAIM 594
Y SGTSMA P VAG A L+ +P S A +K+ ++
Sbjct: 236 IGDTSDSA----YTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLI 289
Query: 595 TTA 597
+A
Sbjct: 290 NSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 25/125 (20%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS G + KPD++APG +I+++ Y+ SGTSMA P
Sbjct: 178 ADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLGG----------YDSHSGTSMAAP 224
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
VAG A L+ + +P +P +++ ++TTAT S ++G G +N
Sbjct: 225 LVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGL------------DRSFGYGLLNL 272
Query: 629 NSALD 633
A+
Sbjct: 273 GKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 38/210 (18%)
Query: 216 ENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGAN 275
+ T D+NGHGTH + G +P A+L + KV G
Sbjct: 36 PDPTPDDDNNGHGTHVAGIIAAGDNNGSGGV--------GVAPNAKLESVKVLPGSGG-- 85
Query: 276 LCNAADIIAG--FDVAIHDGVDIISASLGSKPKEHFESSVAVGSF---HAMMHGILVVAS 330
+++ + + + +I+ SLG S A+ A G L V +
Sbjct: 86 --TDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVA 143
Query: 331 AGNSGPAEKTVDNVPP---W-VLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQD 386
AGN G P ++TVGA T + + + + G
Sbjct: 144 AGNGGDYADNNPVSDPASANNIITVGAVTENGTIADF--------------SNYGGPVDG 189
Query: 387 FYPLIAGEAAKVA---NVSNEDATQCKNGT 413
P I + + +GT
Sbjct: 190 IKPDIVAPGGNILSSGPGGDLGGYDSHSGT 219
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 21/92 (22%)
Query: 505 SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTS 564
+ + FS+ GP + ++ APGVDI++ + N Y +SGTS
Sbjct: 159 NNNRASFSSTGPEV--------ELAAPGVDILSTYPNND-------------YAYLSGTS 197
Query: 565 MACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596
MA PHVAG+A LV + P+ + A ++ A+ T
Sbjct: 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APGVDI++ Y MSGTSMA PHVAG A L+ +L+P+ +
Sbjct: 201 DLAAPGVDILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTA 247
Query: 587 AAIKSAIMTTAT 598
A IK AI+++A
Sbjct: 248 AQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 53/177 (29%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 462 MVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARG--PNLI 519
P A N G + VAS + N +M S FS+ G P+L
Sbjct: 191 SGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPNG--GQM-SGFSSWGPTPDLD 247
Query: 520 DPAILKPDVIAPGVDIIAAFT-NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLV- 577
LKPD+ APG +I + N YG MSGTSMA PHVAG + LV
Sbjct: 248 ----LKPDITAPGGNIYSTVNDNTYG--------------YMSGTSMASPHVAGASALVK 289
Query: 578 ---KTLHPDWSPA----AIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVN 627
K +P S +K+ +M TAT S+ +P GAG ++
Sbjct: 290 QRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDT------KTYYSPRRQGAGLID 340
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 25/111 (22%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSH 547
AS +IT + +R + FS G + D+ APGVDI++A+ ++
Sbjct: 166 ASAPEAITVGATDSDDAR--ASFSNYGSCV--------DIFAPGVDILSAWIGSDTA--- 212
Query: 548 EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
+SGTSMA PHVAG+A + +L PD SPA +K+ ++ AT
Sbjct: 213 ---------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 51/196 (26%), Positives = 72/196 (36%), Gaps = 41/196 (20%)
Query: 193 GIRYISEGLIESCRAMNSSFLVPE--------NLTTSIDHNGHGTHTLSTAGGSFVSNVS 244
G+ + L R + N D NGHGTHT+ T G+
Sbjct: 12 GVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGN------ 65
Query: 245 LYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFD--VAIHD---------- 292
G G G +P AR A + N N AD + +A D
Sbjct: 66 ---DGDGQQIGVAPGARWIACRAL----DRNGGNDADYLRCAQWMLAPTDSAGNPADPDL 118
Query: 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVL 349
D+I+ S G ++ AV ++ A GI V +AGN GP T++ P P
Sbjct: 119 APDVINNSWGGPSGDNEWLQPAVAAWRAA--GIFPVFAAGNDGPRCSTLNAPPANYPESF 176
Query: 350 TVGASTTDR---EFSS 362
VGA+ + +FSS
Sbjct: 177 AVGATDRNDVLADFSS 192
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 504 WSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGT 563
+ FS G + DV APG I++ P Y MSGT
Sbjct: 185 QDDKRASFSNYGKWV--------DVSAPGGGILSTT------------PDGD-YAYMSGT 223
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
SMA PHVAG+A L+ + P S + ++ A+ TA
Sbjct: 224 SMATPHVAGVAALLYSQGP-LSASEVRDALKKTADD 258
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 28/143 (19%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D GHGTH T GG G G +P+A L KV + + I
Sbjct: 41 DAGGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVL----DDGGGSLSQI 87
Query: 283 IAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMH------GILVVASAGNSGP 336
IAG + A+ D++S SLG + + + G L V SAGN G
Sbjct: 88 IAGMEWAVEKDADVVSMSLGG-------TYYSEDPLEEAVEALSNQTGALFVVSAGNEGH 140
Query: 337 AEKTVDNVPPWVLTVGASTTDRE 359
L+VGA DR+
Sbjct: 141 GTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
S+FS+ GP LKPDV APG +I++ + G Y V+SGTSMA P
Sbjct: 189 SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTSMATP 235
Query: 569 HVAGIAGLVKTL-HPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVN 627
+VAG A L+ H SPA ++ + +TA A GAG VN
Sbjct: 236 YVAGAAALLIQARHGKLSPAELRDLLASTAK---PLPWSDGTSALPDLAPVAQQGAGLVN 292
Query: 628 PNSALD 633
AL
Sbjct: 293 AYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 23/91 (25%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+RGP+ KPD+ APGV+I +A Y SGTSMA PHV
Sbjct: 190 FSSRGPSTYGRI--KPDISAPGVNIRSAVPGGG-------------YGSSSGTSMAAPHV 234
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTATTED 601
AG+A L+ WS A S I TE
Sbjct: 235 AGVAALL------WS--ANPSLIGDVDATEA 257
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 43/153 (28%), Positives = 58/153 (37%), Gaps = 30/153 (19%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH G G G A G + ++ K +D
Sbjct: 61 DDNGHGTHVAGIIGAVG-------NNGIGIA-GVAWNVKIMPLKFL---GADGSGTTSDA 109
Query: 283 IAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG------- 335
I D A+ G II+ S G A+ A+ GIL VA+AGN G
Sbjct: 110 IKAIDYAVDMGAKIINNSWGGGGPSQALRD-AIA--RAIDAGILFVAAAGNDGTNNDKTP 166
Query: 336 --PAEKTVDNVPPWVLTVGAST-TDR--EFSSY 363
PA +DN +++V A+ D FS+Y
Sbjct: 167 TYPASYDLDN----IISVAATDSNDALASFSNY 195
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 45/177 (25%)
Query: 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAAD 281
+D GHGT G +N G KG +P + +Y+V A
Sbjct: 50 VDKLGHGTAV----AGQIAAN--------GNIKGVAPGIGIVSYRVFGSCGSAESS---W 94
Query: 282 IIAGFDVAIHDGVDIISASLGS---KPKEHFESSVAVGSF-----HAMMHGILVVASAGN 333
II A DGVD+I+ SLG E+ + V ++ +A G +VVA+AGN
Sbjct: 95 IIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGN 154
Query: 334 SG-------------------PAEKTVDNVP---PWVLTVGASTTDREFSSYVTLGN 368
G V +VP P V+TV A+ + SS+ GN
Sbjct: 155 DGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLSSFSNYGN 211
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 37/125 (29%)
Query: 485 NTENPVA-----SMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF 539
+ + NSI + FS RGP +KPD+ APGV+I+ A
Sbjct: 342 TARSVITVGAYNQNNNSI-----------AIFSGRGPTRDG--RIKPDIAAPGVNILTAS 388
Query: 540 TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIA------GLVKTLHPDWSPAAIKSAI 593
Y SGTS+A VAG G+V+ P IK+ +
Sbjct: 389 PGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYL 435
Query: 594 MTTAT 598
+ A
Sbjct: 436 IRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 46/158 (29%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVC-WKPNGANLCNAAD 281
D NGHGTH T GG YG AK KA L A KV +G +
Sbjct: 61 DCNGHGTHVAGTVGGK----------TYGVAK----KANLVAVKVLDCNGSGTL----SG 102
Query: 282 IIAGFDVAIHDGVD-----IISASLGSKPKEHFESSVAVGSFHAMMH-GILVVASAGNSG 335
IIAG + +D + + SLG +++VA A ++ G++VV +AGNS
Sbjct: 103 IIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA-----AAVNAGVVVVVAAGNSN 157
Query: 336 -------PAEKTVDNVPPWVLTVGAST-TDR--EFSSY 363
PA + P +TVGA+ D FS+Y
Sbjct: 158 QDACNYSPA-----SAPE-AITVGATDSDDARASFSNY 189
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 25/127 (19%)
Query: 508 TSFFSARGPNLIDPAIL-KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMA 566
S F G L P + KPDV AP D + + G F GTS A
Sbjct: 172 PSSFDPVGIRLPTPEVRQKPDVTAP--DGVNGTVDGDGDGPPNF----------FGTSAA 219
Query: 567 CPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHV 626
PH AG+A LV + +P +PA I+ A+ +TA + D A G+G V
Sbjct: 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---D---------NASGSGLV 267
Query: 627 NPNSALD 633
+ + A+
Sbjct: 268 DADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 512 SARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVA 571
+ + + + + D+ APGVDI++A Y MSGTSMA PHVA
Sbjct: 199 TGNFSAVANFSNGEVDIAAPGVDIVSA-------------APGGGYRSMSGTSMATPHVA 245
Query: 572 GIAGL 576
G+A L
Sbjct: 246 GVAAL 250
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 36/138 (26%)
Query: 507 MTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMA 566
S FS GP D+ APG +I++ P SGTS A
Sbjct: 189 TPSSFSLPGP--------WVDLAAPGENIVSL------------SPGGDGLATTSGTSFA 228
Query: 567 CPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHV 626
P V+G A LV++ PD + A ++ I TA HP + G G V
Sbjct: 229 APFVSGTAALVRSRFPDLTAAQVRRRIEATA------DHP------ARGGRDDYVGYGVV 276
Query: 627 NPNSALDPGLVYDLGPGD 644
+P +A L +L P D
Sbjct: 277 DPVAA----LTGELPPED 290
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 69/267 (25%), Positives = 98/267 (36%), Gaps = 82/267 (30%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKV--CWKPNGANLCNAA 280
D GHGTH N + YG G +P+A L AY+V C +
Sbjct: 66 DCQGHGTHVAGIIAA----NPNAYG-----FTGVAPEATLGAYRVFGCSGSTTEDT---- 112
Query: 281 DIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG----- 335
IIA F A DG D+I+ASLG P E AV + + G++V +AGN G
Sbjct: 113 -IIAAFLRAYEDGADVITASLGG-PSGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPF 170
Query: 336 ----PAEKTVDNVPPWVLTVGASTTDREFSSY------------------------VTLG 367
PA + V+ V + D FSS+ + G
Sbjct: 171 YASSPA--SGRG----VIAVAS--VDSYFSSWGPTNELYLKPDVAAPGGNILSTYPLAGG 222
Query: 368 NKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVK------G 421
V+ G S+A P +AG AA + Q ++G + P +++
Sbjct: 223 GYAVLSGTSMAT---------PYVAGAAALLI--------QARHGKLSPAELRDLLASTA 265
Query: 422 KILICYDAKIGDAKGQRAAQAGAVGMI 448
K L D AQ GA G++
Sbjct: 266 KPLPWSDGTSALPDLAPVAQQGA-GLV 291
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAAD 281
+D NGHGTH +N G G A G +PKA++ KV +L AD
Sbjct: 65 MDDNGHGTHVAGIIAA--ATN-----NGTGVA-GVAPKAKIMPVKVLDANGSGSL---AD 113
Query: 282 IIAGFDVAIHDGVDIISASLGSKPKEHFESSV---AVGSFHAMMHGILVVASAGNSGPAE 338
I G A G +I+ SLG S+ A+ +A G++VVA+AGN G +
Sbjct: 114 IANGIRYAADKGAKVINLSLGG----GLGSTALQEAIN--YAWNKGVVVVAAAGNEGVSS 167
Query: 339 KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368
+ P + V A+ D + +S+ G
Sbjct: 168 VSYPAAYPGAIAVAATDQDDKRASFSNYGK 197
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 30 YVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLE 89
Y+V + S H + S E A I +SY NGF A L
Sbjct: 2 YIVKFKDGVSKAAVFS--------SHKSWHASSKE--EAAGASILYSYKHGFNGFAAKLT 51
Query: 90 EEHAKQIARHPEVVSVFLEEGIDLH 114
EE A+++ +HP+V V ++ ++LH
Sbjct: 52 EEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 40/167 (23%), Positives = 58/167 (34%), Gaps = 32/167 (19%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
++ D + HGTH + GM G A P A L + + + + +
Sbjct: 40 ASNGDGDSHGTHVAGVIAAARDGG----GMH-GVA----PDATLYSARASA--SAGSTFS 88
Query: 279 AADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGS------------FHAMMHGIL 326
ADI A +D GV II+ S G P S+ GS A G L
Sbjct: 89 DADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGL 148
Query: 327 VVASAGNSGPAEKT---------VDNVPPWVLTVGASTTDREFSSYV 364
V +AGN G A + + + V A + +SY
Sbjct: 149 FVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIASYS 195
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVP----YNVMSGTSMA 566
+S GP + DV APG D A + P Y + GTSMA
Sbjct: 206 YSNYGPAV--------DVSAPGGDC--ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255
Query: 567 CPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596
PHVAG+A L+K+++P +PA I+S + +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.6 bits (125), Expect = 6e-07
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 508 TSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMAC 567
+ FS G D+ APGV+I++ Y +SGTSMA
Sbjct: 318 VASFSNDGSPT------GVDIAAPGVNILSLSAVNT------LPGDGADYVTLSGTSMAA 365
Query: 568 PHVAGIAGLVKTLHP-DWSPAAIKSAIMTTATTEDSSKHPIL----DQVTGQKATPFAYG 622
PHV+G+A LV + +P + +PA +++ I+TTA S L AT A G
Sbjct: 366 PHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGG 425
Query: 623 AGHVNPNSALDPGLVYD 639
N + +
Sbjct: 426 TLPANGTGSSQGAVEAP 442
|
Length = 508 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 32/234 (13%)
Query: 135 AWNKARF-GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIG 193
W+K + GE +++ +DSGV P +F ++ + KA +
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKA-----GIGY 54
Query: 194 IRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTA 253
+Y +E + + +++ +++ D + HG H G+ + G+ G A
Sbjct: 55 GKYYNEKVPFAYNYADNN----DDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA 109
Query: 254 KGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS-----KPKEH 308
P+A+L A KV P G + + A+ G D+I+ SLGS +
Sbjct: 110 ----PEAQLLAMKVFSNPEGGS-TYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDP 164
Query: 309 FESSVAVGSFHAMMHGILVVASAGN-----SGPAEKTVDNVPPWVLTVGASTTD 357
+ ++ A G++VV +AGN SG ++ N P +T D
Sbjct: 165 EQQAIK----RAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 38/149 (25%), Positives = 52/149 (34%), Gaps = 40/149 (26%)
Query: 213 LVPENLTTSI---DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269
+ ++ D +GHGTH T G V G YG A A +A
Sbjct: 31 ITTKSFVGGEDVQDGHGHGTHCAGTIFGRDVP-----GPRYGVA----RGAEIALIGKVL 81
Query: 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGS------------ 317
G I+AG A+ +G D+IS SLG+ + G
Sbjct: 82 GDGGGGD---GGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQR 138
Query: 318 ---FHAMMH----------GILVVASAGN 333
F A+M G L+VA+AGN
Sbjct: 139 ARLFDALMTLVAAQAALARGTLIVAAAGN 167
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 45/155 (29%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNA 279
T D +GHGTH G + S+ KG +PKA+L + NL +
Sbjct: 49 TKDDVDGHGTHVAGIIAGKGNDSSSISL-----YKGVAPKAKLYFQDIGDT--SGNLSSP 101
Query: 280 ADIIAGFDVAIHDGVDIISASLGSKPKEHF-ESSVAVGSFHAMMHGILVVASAGNSGPAE 338
D+ F G I S S GS + + A F IL V SAGN G
Sbjct: 102 PDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDG 161
Query: 339 KTVDNVPPW---VLTVGASTTDREFSSYVTLGNKM 370
P VLTVGAS + LG
Sbjct: 162 SNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSD 196
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-06
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 398 VANVSNEDATQCKNGTIDPEKVKGKILICYDAKIG-DAKGQRAAQAGAVGMILANSREDQ 456
V + +DA C + VKGKI++ K + A +AGA G+I+ N+
Sbjct: 11 VYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGG 70
Query: 457 NISLNMV---HFLPTAYVNYKDGQSV 479
+P +++Y+DG+++
Sbjct: 71 LGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
DV APG I + + Y SGTSMA P V+G+A L+ + +P+ +
Sbjct: 233 DVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 587 AAIKSAIMTTAT 598
+K I+ +
Sbjct: 280 KEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (113), Expect = 1e-05
Identities = 48/210 (22%), Positives = 71/210 (33%), Gaps = 20/210 (9%)
Query: 208 MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKV 267
F+ + +D NGHGTH T N + G A G A+L KV
Sbjct: 166 AGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGV---AGVAPG----AKLLLVKV 218
Query: 268 CWKPNGANLCNAADIIAGFDVAI--HDGVDIISASLGSKPKEHFESSVAVGSFHAMM--H 323
G+ +D+ G + A D+I+ SLG + S + A
Sbjct: 219 LGSGGGSG--ELSDVAEGIEGAANLGGPADVINLSLGGSLSDS-ASPALGDALAAAANAG 275
Query: 324 GILVVASAGNSGPAEKTVDNVPPW------VLTVGASTTDREFSSYVTLGNKMVIKGASI 377
G+++VA+AGN G D P V+ VGA +S+ G+ + A+
Sbjct: 276 GVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAAP 335
Query: 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDAT 407
L A V A
Sbjct: 336 GVNILSLSAVNTLPGDGADYVTLSGTSMAA 365
|
Length = 508 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+ GP D LKPDV+A G I + +GTS +CP +
Sbjct: 189 FSSIGPT-ADGR-LKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLI 233
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTA 597
AG+ + HP+W+ IK AI+ +A
Sbjct: 234 AGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD 583
D+ APGV I + + Y +SGTSMA PHV+G+A LV + PD
Sbjct: 209 DIAAPGVGTILSTVPKLDGDGGG------NYEYLSGTSMAAPHVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDI---IAAFTNEYGPSHEEFDPRRVPYNVMSGTSMAC 567
+S G + D++APGV I + Y SGTS A
Sbjct: 169 YSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGG-------YGSFSGTSFAS 213
Query: 568 PHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596
P AG+A L+ + +P+ +PA ++ + +T
Sbjct: 214 PVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 29/167 (17%)
Query: 277 CNAADIIAGFDVAIHDGVDIISASLGS-----KPKEHFESSVAVGSFHAMMHGILVVASA 331
C+ D+ ++A+ G II+ S G + ++VA+ + +L+VA+A
Sbjct: 90 CSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAA 145
Query: 332 GNSGPAEKTVDNVPPWVLTVGA---STTDREFSSYV-TLGNKMV------IKGASIAE-- 379
GN G A V P VL VGA +FS++ K + I GA++
Sbjct: 146 GNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGILAPGENILGAALGGEV 205
Query: 380 -KGSLTQDFYPLIAGEAAKVANVSNEDATQCKNG-TIDPEKVKGKIL 424
+ S T ++AG AA + + Q + G DP V+ +L
Sbjct: 206 VRRSGTSFAAAIVAGIAALLL------SLQLRRGAPPDPLAVRRALL 246
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPS--HEEFDPRRVPYNVMSGTSMACP 568
+S+RGP++ KPD+ A I AF G +++ GTSMA P
Sbjct: 224 WSSRGPSIA--GDPKPDLAA-----IGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATP 276
Query: 569 HVAGIAGLV------KTLHPDWSPAAIKSAIMTTA 597
AG A LV K ++ P +++ +M+TA
Sbjct: 277 MTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 12/161 (7%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
GHGTH T ++ V+ G G G G A G
Sbjct: 55 NDVSVGGGHGTHVAGT-----IAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVG 109
Query: 279 AADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAM-------MHGILVVASA 331
+ A A +G I+ S G + + + + + G +VV SA
Sbjct: 110 DDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSA 169
Query: 332 GNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372
GNS E P V+ V A T+ +S+ G + I
Sbjct: 170 GNSYTDEHRFPAAYPGVIAVAALDTNDNKASFSNYGRWVDI 210
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 25/109 (22%)
Query: 419 VKGKIL------ICYDAKIGDAKGQRAAQAGAVGMILANSRE-DQNISLNMVHFLPTAYV 471
VKGKI I + KI +AK AGAVG+I+ N+ + +L F+P ++
Sbjct: 46 VKGKIALIQRGEITFVEKIANAK-----AAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI 100
Query: 472 NYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF----FSARGP 516
+ +DG+++ A A ++ FN + T+ FS+RGP
Sbjct: 101 SKEDGEALKA---------ALESSKKLTFNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEK--VKGKILI-----CY 427
+A G V C GT D VKGKI++ C
Sbjct: 2 VILATTGYAGSALLFNPPSSPVGVVAGPLVG---CGYGTTDDSGADVKGKIVLVRRGGCS 58
Query: 428 DAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHF------LPTAYVNYKDGQSVYA 481
++ K + A +AGA +I+ N+ +D + V +PT ++Y DG+++ +
Sbjct: 59 FSE----KVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLS 114
Query: 482 YIYNTEN 488
+ +
Sbjct: 115 LLEAGKT 121
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 25/109 (22%)
Query: 479 VYAYIYNTE-NPVASMTNSITEFNKIWS-RMTSFFSARGPNLIDPAILKPDVIAPGVDII 536
VY I + + V +++N I + N +S SF+SA+ L APG +I
Sbjct: 493 VYPPILSKKLRNVITVSNLIKDKNNQYSLSPNSFYSAKYCQLA----------APGTNIY 542
Query: 537 AAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585
+ F P + Y ++GTSMA PHVA IA L+ +++P S
Sbjct: 543 STF-----PKNS--------YRKLNGTSMAAPHVAAIASLILSINPSLS 578
|
Length = 639 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 530 APGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAA 588
APG +I + G Y +SGTS A PHV+G A L+ P +
Sbjct: 210 APGENIYSTDPDGGNG------------YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQ 257
Query: 589 IKSAIMTTAT 598
++ ++TTAT
Sbjct: 258 VRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 509 SFFSARGPNLI---------DPAILKPDV--IAPGVDIIAAFTNEYGPSHEEFDPRRVPY 557
A PN+I + V A GVDIIA + Y
Sbjct: 135 GTPPASFPNVIGVKSDTADDPKSFWYIYVEFSADGVDIIAPAPHGR-------------Y 181
Query: 558 NVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
+SG S A PHV G+ L+ + PD +K + A
Sbjct: 182 LTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 31/135 (22%)
Query: 293 GVDIISASLG---------SKPKEHFESSVAVGSFHAMM---HGILVVASAGNSGPAEKT 340
GVDIIS+SLG S + + S A + G+LVV SAGN G +
Sbjct: 104 GVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWK 163
Query: 341 VDNVP---PWVLTVGASTTDRE---FSSY------------VTLGNKM-VIKGASIAEKG 381
P VL+VGA + FSS + LG + VI G
Sbjct: 164 GIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVMALGTGIYVINGDGNITYA 223
Query: 382 SLTQDFYPLIAGEAA 396
+ T PLIAG A
Sbjct: 224 NGTSFSCPLIAGLIA 238
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 216 ENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGAN 275
N + D +GHGT A V N G G A G +P A+L ++ +
Sbjct: 31 SNNDPTSDIDGHGTACAGVAAA--VGN-----NGLGVA-GVAPGAKLMPVRI---ADSLG 79
Query: 276 LCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAM--MHGILVVASAGN 333
+DI A +G D+IS S G SS + G +V+ +AGN
Sbjct: 80 YAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGN 139
Query: 334 SGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGN 368
SG + + P V+ V A+ ++ +SY GN
Sbjct: 140 SGRSVSSGYAANPSVIAVAATDSNDARASYSNYGN 174
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 258 PKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGS 317
P A L V + G +A + D GV +++ SL P ++VA
Sbjct: 58 PGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPNALLAAAVA--- 114
Query: 318 FHAMMHGILVVASAGNSGPA 337
A G+++VA+AGN GPA
Sbjct: 115 -AAAARGMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 49/226 (21%), Positives = 77/226 (34%), Gaps = 66/226 (29%)
Query: 142 GEDVIIGNLDSGVWPESQSFTDE-GMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEG 200
G+ V++G +D+G+ F +E G I W T G +E
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-----PGGYYGGGEYTEE 57
Query: 201 LIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKA 260
+I + A ++ P ++ S D NGHGTH A G+ +N G+ +P+A
Sbjct: 58 IINAALASDN----PYDIVPSRDENGHGTHVAGIAAGNGDNNPDFKGV--------APEA 105
Query: 261 RLAAYKVCWKPNGANL---------CNAADIIAG----FDVAI----------------- 290
L K+ K L DI+ +D A+
Sbjct: 106 ELIVVKL--KQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFG 163
Query: 291 -HDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG 335
HDG ++ + + + GI VV AGN G
Sbjct: 164 SHDGTSLLERYI---------------DAISRLRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 560 MSGTSMACPHVAG-IAGLVKTLHP---DWSPAAIKSAIMTTAT 598
M+GTSM+ P+ G IA L+ L ++P +++ A+ TA
Sbjct: 368 MNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 495 NSITEFNKIWSR---------MTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGP 545
+IT + I R ++ GP P +KPDV+A G ++ +
Sbjct: 176 GAITSDDDITDRARYSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233
Query: 546 SHEE-----FDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIK 590
P + + GTS A P A +A + P+ SP I+
Sbjct: 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 26/156 (16%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK----PNGANLCN 278
D +GHGT G G+ +P AR+ + G +
Sbjct: 49 DCDGHGTLVAGIIAGRPGEGDGFSGV--------APDARILPIRQTSAAFEPDEGTSGVG 100
Query: 279 AADIIAGFDVAIH----DGVDIISASLGS-KPKEHFESSVAVGSF--HAMMHGILVVASA 331
+A AI G D+I+ SL + P +G+ +A+ G++VVA+A
Sbjct: 101 DLGTLAK---AIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAA 157
Query: 332 GN-SGPAEKTVDNVPPW---VLTVGASTTDREFSSY 363
GN G +KT P W VL VG+ D SS+
Sbjct: 158 GNTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTPSSF 193
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.9 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.21 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.15 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.89 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.77 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.71 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.7 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.7 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.65 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.62 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.59 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.57 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.54 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.53 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.53 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.48 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.45 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.4 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.39 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.39 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.33 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.22 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.07 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.22 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.96 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.86 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.12 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.63 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.39 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 95.24 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.23 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.2 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.63 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 92.68 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.56 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.89 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 91.69 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 86.83 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 83.59 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 83.02 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 81.38 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=446.35 Aligned_cols=306 Identities=52% Similarity=0.826 Sum_probs=258.8
Q ss_pred ecccccCCccccCcccCCCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCC-CCccccCc
Q 047013 111 IDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDT-NKAITCNR 189 (781)
Q Consensus 111 ~~~~~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~-~~~~~~n~ 189 (781)
++++++++++++++...... .+|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+. +....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGG---SLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCCc---ccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 46888999999999865321 257789999999999999999999999999988999999999999887 66678999
Q ss_pred eeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeeccccc
Q 047013 190 KLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCW 269 (781)
Q Consensus 190 ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~ 269 (781)
|+++.++|.++++..... ..+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF-----NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhccCc-----ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999999998876654321 112335577899999999999999998776666666667789999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceE
Q 047013 270 KPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVL 349 (781)
Q Consensus 270 ~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vi 349 (781)
..+ .+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+|+...+.++..||++
T Consensus 153 ~~~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDG---GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCC---CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 744 48899999999999999999999999998544566778888889999999999999999988778888899999
Q ss_pred EecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecC
Q 047013 350 TVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDA 429 (781)
Q Consensus 350 tVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 429 (781)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999710
Q ss_pred CcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc
Q 047013 430 KIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS 509 (781)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 509 (781)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 047013 510 FFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAI 589 (781)
Q Consensus 510 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~i 589 (781)
+||||+|||++|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.||
T Consensus 236 --------------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v 298 (307)
T cd04852 236 --------------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAI 298 (307)
T ss_pred --------------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 47799999999999987531 1112233358999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 047013 590 KSAIMTTAT 598 (781)
Q Consensus 590 k~~L~~TA~ 598 (781)
|++|++||+
T Consensus 299 ~~~L~~tA~ 307 (307)
T cd04852 299 KSALMTTAY 307 (307)
T ss_pred HHHHHHhcC
Confidence 999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=447.08 Aligned_cols=293 Identities=21% Similarity=0.187 Sum_probs=209.7
Q ss_pred cccc--cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 134 SAWN--KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 134 ~~w~--~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
.+|+ .+.+|+||+|||||||||++||||.++-..... ...|.....+ +.......+ .+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~GrdgiDd-D~nG~vdd~-~G~nfVd~----------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRKGIDD-DNNGNVDDE-YGANFVNN----------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcccccc-ccCCccccc-ccccccCC-----------
Confidence 4555 456899999999999999999999864110000 0001000000 000000001 11222221
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
...+.|..||||||||||||...++ ..+.||||+|+|+++|+++..+ .+..+++++||+||++
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G---~G~~sdI~~AI~yA~~ 433 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHK---LGRLGDMFKCFDYCIS 433 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCC---CccHHHHHHHHHHHHH
Confidence 2256789999999999999986432 2358999999999999998766 5788999999999999
Q ss_pred cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------ccC----CCCceEEecc
Q 047013 292 DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT--------------VDN----VPPWVLTVGA 353 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA 353 (781)
.|++|||||||... +...+..++..|.++|++||+||||+|..... ++. ..+++|+|||
T Consensus 434 ~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGA 510 (639)
T PTZ00262 434 REAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSN 510 (639)
T ss_pred CCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEee
Confidence 99999999999762 34567888899999999999999999854211 111 2467788877
Q ss_pred cCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcch
Q 047013 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGD 433 (781)
Q Consensus 354 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 433 (781)
++.+..
T Consensus 511 v~~d~~-------------------------------------------------------------------------- 516 (639)
T PTZ00262 511 LIKDKN-------------------------------------------------------------------------- 516 (639)
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 433210
Q ss_pred HHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC
Q 047013 434 AKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA 513 (781)
Q Consensus 434 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 513 (781)
.....+.||+
T Consensus 517 ----------------------------------------------------------------------~~~s~s~~Sn 526 (639)
T PTZ00262 517 ----------------------------------------------------------------------NQYSLSPNSF 526 (639)
T ss_pred ----------------------------------------------------------------------Cccccccccc
Confidence 0013345667
Q ss_pred CCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 047013 514 RGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593 (781)
Q Consensus 514 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L 593 (781)
+|.. ++||+|||++|+|+++.+ .|..++|||||||||||++|||++++|+|++++|+++|
T Consensus 527 yg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL 586 (639)
T PTZ00262 527 YSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRIL 586 (639)
T ss_pred CCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 7621 349999999999998764 89999999999999999999999999999999999999
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCccc-CCcccccccCCCCeee
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYG-AGHVNPNSALDPGLVY 638 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~in~~~Av~~~l~~ 638 (781)
++||.++... +..+| .|+||+++||+.++-+
T Consensus 587 ~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 587 KESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999876321 12233 3899999999976644
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=445.20 Aligned_cols=411 Identities=21% Similarity=0.217 Sum_probs=260.0
Q ss_pred CCCCceEEEEecCCCCcCCCCccC-CCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCC
Q 047013 140 RFGEDVIIGNLDSGVWPESQSFTD-EGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENL 218 (781)
Q Consensus 140 ~~G~gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (781)
++|+||+|||||||||+.||+|++ ++.+|+...|++....... ......+..+..+..+...... +|.+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-----~p~~~ 71 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP----PGGYYGGGEYTEEIINAALASD-----NPYDI 71 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC----CccccCceEEeHHHHHHHHhcC-----Ccccc
Confidence 479999999999999999999986 5688999999998775431 1111222333332333322221 23445
Q ss_pred CCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCC-------CCCChHHHHHHHHHhhh
Q 047013 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA-------NLCNAADIIAGFDVAIH 291 (781)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~ai~~a~~ 291 (781)
....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+...+++.||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 567899999999999999997432 345899999999999999876521 12678999999999886
Q ss_pred c-----CCcEEEecCCCCC-CCCCCChHHHHHHHHHhC-CCEEEEecCCCCCCCCCccCCC-C------ceEEecccCCc
Q 047013 292 D-----GVDIISASLGSKP-KEHFESSVAVGSFHAMMH-GILVVASAGNSGPAEKTVDNVP-P------WVLTVGASTTD 357 (781)
Q Consensus 292 ~-----g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~-p------~vitVgA~~~d 357 (781)
. .++|||||||... .....+.++.++..+..+ |++||+||||+|....+..... + --+.|+.-.
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~-- 221 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE-- 221 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--
Confidence 4 4789999999873 344567788888887766 9999999999997655554311 0 012233211
Q ss_pred eeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccc---cCCCCCCCCCCCCceeEEEEEecCC-c--
Q 047013 358 REFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNED---ATQCKNGTIDPEKVKGKILICYDAK-I-- 431 (781)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~---~~~c~~~~~~~~~~~gkivl~~~g~-~-- 431 (781)
..+..+++..... .+...+.+|++.... ........+.-..-..++.+..+.. .
T Consensus 222 ~~~~~eiW~~~~d--------------------~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~ 281 (455)
T cd07478 222 KGFNLEIWGDFPD--------------------RFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYT 281 (455)
T ss_pred cceEEEEecCCCC--------------------EEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCC
Confidence 1111112211100 111111122111100 0000000000000112222222211 0
Q ss_pred ----chHHHHHHHhcCceEEEEecCCCCccccccc-cccccEEEEehhhHHHHHHHHhcCCCcEEEEecc----eeeecc
Q 047013 432 ----GDAKGQRAAQAGAVGMILANSREDQNISLNM-VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNS----ITEFNK 502 (781)
Q Consensus 432 ----~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~----~~~~~~ 502 (781)
.... ..-...|.+-+.++.... .... ..|+|.-.+..++. .++...+..++++... .++..+
T Consensus 282 g~~~i~i~-~~~~~~GiW~i~~~~~~~----~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~ 352 (455)
T cd07478 282 GDQLIFIR-FKNIKPGIWKIRLTGVSI----TDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAY 352 (455)
T ss_pred CCeEEEEE-ccCCCccceEEEEEeccC----CCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEE
Confidence 0000 111223444444443221 1222 24777665554433 2345556666666533 345555
Q ss_pred cc-CCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC
Q 047013 503 IW-SRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581 (781)
Q Consensus 503 ~~-~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (781)
+. .+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 353 ~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~ 417 (455)
T cd07478 353 NQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWG 417 (455)
T ss_pred eCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhc
Confidence 55 35699999999998 8999999999999999999864 89999999999999999999999975
Q ss_pred ------CCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCC
Q 047013 582 ------PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAG 624 (781)
Q Consensus 582 ------p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 624 (781)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 418 ~~~~~~p~~~~~~ik~~L~~tA~~~~~-----------~~~pn~~~GyG 455 (455)
T cd07478 418 IVRGNDPYLYGEKIKTYLIRGARRRPG-----------DEYPNPEWGYG 455 (455)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccCCC-----------CCCCCCCCCCC
Confidence 567999999999999988631 35678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=408.53 Aligned_cols=243 Identities=24% Similarity=0.337 Sum_probs=199.4
Q ss_pred cccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccC
Q 047013 136 WNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVP 215 (781)
Q Consensus 136 w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p 215 (781)
|+++++|+||+|||||||||.+||+|.+. ....+|.+
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 89999999999999999999999999742 00011111
Q ss_pred CCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCc
Q 047013 216 ENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVD 295 (781)
Q Consensus 216 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~d 295 (781)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ .+..+.++++|+||++++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~~ 101 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKID 101 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCCC
Confidence 11345778999999999999741 248999999999999998765 46678899999999999999
Q ss_pred EEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEe
Q 047013 296 IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIK 373 (781)
Q Consensus 296 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~ 373 (781)
|||||||... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 102 Vin~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------- 162 (255)
T cd07479 102 VLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------- 162 (255)
T ss_pred EEEeeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------
Confidence 9999999863 3445677778888899999999999999754443 445688999998432
Q ss_pred eeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCC
Q 047013 374 GASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 374 g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC----CCCCccCeee
Q 047013 454 EDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI----DPAILKPDVI 529 (781)
Q Consensus 454 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~ 529 (781)
.+.++.|||+|++.. ..+++||||.
T Consensus 163 ---------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~ 191 (255)
T cd07479 163 ---------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIV 191 (255)
T ss_pred ---------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEE
Confidence 257889999996521 2678899999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccC
Q 047013 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP----DWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lt~~~ik~~L~~TA~~~ 600 (781)
|||.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 192 apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 192 TYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred ecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999999876543 788999999999999999999999998 789999999999999876
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=422.13 Aligned_cols=313 Identities=28% Similarity=0.332 Sum_probs=237.0
Q ss_pred cccccCC-CCCceEEEEecCCCCcCCCCccCCCCCCCCC-----CCcccccCCCCCccccCceeeeeEeccchhhhhhcc
Q 047013 134 SAWNKAR-FGEDVIIGNLDSGVWPESQSFTDEGMGPIPD-----RWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRA 207 (781)
Q Consensus 134 ~~w~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 207 (781)
++|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3788888 9999999999999999999998764332211 11111111 2345667788888877765211
Q ss_pred CCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccC--CCCCCCCChHHHHHH
Q 047013 208 MNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK--PNGANLCNAADIIAG 285 (781)
Q Consensus 208 ~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~--~~~~~~~~~~~i~~a 285 (781)
.....+..+|||||||||+|...+.. .+..+.||||+|+|+.+|+++. .. .+....+++|
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~a 136 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAKA 136 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHHH
Confidence 11245789999999999999874321 1235699999999999999974 33 4778899999
Q ss_pred HHHhhhcCCcEEEecCCCCCCC-CCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc----------------CCCCce
Q 047013 286 FDVAIHDGVDIISASLGSKPKE-HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD----------------NVPPWV 348 (781)
Q Consensus 286 i~~a~~~g~dVIN~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~v 348 (781)
++++++.|++|||||||..... .....+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999998422 34566788888999999999999999986443211 234566
Q ss_pred EEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEec
Q 047013 349 LTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD 428 (781)
Q Consensus 349 itVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (781)
|+||++...
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 666663210
Q ss_pred CCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcc
Q 047013 429 AKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508 (781)
Q Consensus 429 g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 508 (781)
......+.+
T Consensus 226 -----------------------------------------------------------------------~~~~~~~~~ 234 (346)
T cd07475 226 -----------------------------------------------------------------------VPNPNGGQM 234 (346)
T ss_pred -----------------------------------------------------------------------cCCCCCCcc
Confidence 001123678
Q ss_pred ccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh----CCCC
Q 047013 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL----HPDW 584 (781)
Q Consensus 509 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~l 584 (781)
+.||+|||+. ..++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|
T Consensus 235 ~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l 299 (346)
T cd07475 235 SGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKL 299 (346)
T ss_pred CCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8999999998 8999999999999999987763 7899999999999999999999998 7899
Q ss_pred CHHH----HHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 585 SPAA----IKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 585 t~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
++.+ ||.+|++||.+..... ....++.+.++|+|+||+.+|++
T Consensus 300 ~~~~~~~~ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 300 SGEELVDLVKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CHHHHHHHHHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 9876 7889999998531110 33456778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=406.71 Aligned_cols=270 Identities=24% Similarity=0.226 Sum_probs=201.7
Q ss_pred CCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCC
Q 047013 139 ARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENL 218 (781)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (781)
+++|+||+|||||||||.+||++.+..- .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 5799999999999999999986543211 111111111111 1
Q ss_pred CCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEE
Q 047013 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIIS 298 (781)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN 298 (781)
....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin 95 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIV 95 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEE
Confidence 134578899999999994 77999999998873 3478899999999999999999
Q ss_pred ecCCCCCCCC-CCChHHHHHHHHHhC-CCEEEEecCCCCCCCC-CccCCCCceEEecccCCceeeeeeEEeCCceEEeee
Q 047013 299 ASLGSKPKEH-FESSVAVGSFHAMMH-GILVVASAGNSGPAEK-TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGA 375 (781)
Q Consensus 299 ~SlG~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~ 375 (781)
||||...... .+..+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 96 ~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------- 164 (275)
T cd05562 96 DDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------- 164 (275)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-----------
Confidence 9999864333 334677888888887 9999999999997543 3345789999999976442100000
Q ss_pred eeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCC
Q 047013 376 SIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRED 455 (781)
Q Consensus 376 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~ 455 (781)
|.
T Consensus 165 ---------------------------------~~--------------------------------------------- 166 (275)
T cd05562 165 ---------------------------------DP--------------------------------------------- 166 (275)
T ss_pred ---------------------------------cc---------------------------------------------
Confidence 00
Q ss_pred ccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCC-c
Q 047013 456 QNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV-D 534 (781)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~ 534 (781)
.........+.||++||+. ++++||||+|||. .
T Consensus 167 --------------------------------------------~~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~ 200 (275)
T cd05562 167 --------------------------------------------APGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVN 200 (275)
T ss_pred --------------------------------------------ccCCCcccccCCcccCcCC--CCCcCCeEEcCCccc
Confidence 0000012345678899987 8899999999975 4
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCC
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQ 614 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (781)
+.+.+.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 201 ~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~----------- 256 (275)
T cd05562 201 GTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP----------- 256 (275)
T ss_pred ccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-----------
Confidence 4544433 2799999999999999999999999999999999999999999887422
Q ss_pred CCCCCcccCCcccccccCC
Q 047013 615 KATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 615 ~~~~~~~G~G~in~~~Av~ 633 (781)
..+..||||+||+.+|++
T Consensus 257 -g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 -GYDNASGSGLVDADRAVA 274 (275)
T ss_pred -CCCCCcCcCcccHHHHhh
Confidence 245689999999999987
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=412.94 Aligned_cols=287 Identities=26% Similarity=0.258 Sum_probs=190.8
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||||||++||+|.++.. ..|...++ +...+. .+++... .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d--------~~~~~~------~g~d~~~----------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD--------YKAYLL------PGMDKWG----------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC--------cCCCcc------CCcCCCC----------CccCCC
Confidence 8999999999999999999975421 01111100 000111 1111110 001246
Q ss_pred CCCCCccccccccccccccccccccccC-CccccccCCCceEeecccccCCCCCCCCChHHHHH-------HHHHh--hh
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMG-YGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIA-------GFDVA--IH 291 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~-~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------ai~~a--~~ 291 (781)
.|.+||||||||||||....+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.. +++|. .+
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccC
Confidence 7899999999999999864332222211 23569999999999999997543 132222222 34443 36
Q ss_pred cCCcEEEecCCCCCCCC-----CCChHHHHHHHH-HhCCCEEEEecCCCCCCCCC--ccCCCCceEEecccCCceeeeee
Q 047013 292 DGVDIISASLGSKPKEH-----FESSVAVGSFHA-MMHGILVVASAGNSGPAEKT--VDNVPPWVLTVGASTTDREFSSY 363 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~d~~~~~~ 363 (781)
++++|||||||.....+ ..+..+..+..+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+..
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~ 209 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY 209 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh
Confidence 79999999999863211 112233333332 48999999999999976444 34467999999997533100000
Q ss_pred EEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcC
Q 047013 364 VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAG 443 (781)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G 443 (781)
...
T Consensus 210 -------------------------~~~---------------------------------------------------- 212 (311)
T cd07497 210 -------------------------LFG---------------------------------------------------- 212 (311)
T ss_pred -------------------------hhc----------------------------------------------------
Confidence 000
Q ss_pred ceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCC
Q 047013 444 AVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAI 523 (781)
Q Consensus 444 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 523 (781)
......+.++.||||||+. +++
T Consensus 213 --------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~ 234 (311)
T cd07497 213 --------------------------------------------------------YLPGGSGDVVSWSSRGPSI--AGD 234 (311)
T ss_pred --------------------------------------------------------cccCCCCCccccccCCCCc--ccC
Confidence 0001136789999999998 899
Q ss_pred ccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 047013 524 LKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP------DWSPAAIKSAIMTTA 597 (781)
Q Consensus 524 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lt~~~ik~~L~~TA 597 (781)
+||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 235 ~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 235 PKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999999876532100 011123799999999999999999999999976 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=408.90 Aligned_cols=294 Identities=30% Similarity=0.337 Sum_probs=229.6
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccch-hhhhhccCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEG-LIESCRAMNSS 211 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~ 211 (781)
+.+|+.+++|+||+|||||+|||++||+|.++-. .+.++.+.+++..+ +....
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~~~------ 56 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDGTN------ 56 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccccc------
Confidence 5899999999999999999999999999986411 11223333333321 11000
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
.+.+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ....+.++++|+++++
T Consensus 57 --~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 57 --PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAYE 122 (312)
T ss_pred --CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHHh
Confidence 0111235667799999999999998643 2348999999999999998665 4778889999999999
Q ss_pred cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 292 DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
++++|||||||... .+....+..++.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 123 ~~~~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 123 DGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred cCCCEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 99999999999873 334467778888899999999999999986532 2234567888888721
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.||+|||+. +...||||
T Consensus 189 ------------------------------------------------------------~~~s~~g~~~--~~~~kpdv 206 (312)
T cd07489 189 ------------------------------------------------------------SYFSSWGPTN--ELYLKPDV 206 (312)
T ss_pred ------------------------------------------------------------CCccCCCCCC--CCCcCccE
Confidence 5689999998 78999999
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH-PDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
+|||++++++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+...
T Consensus 207 ~ApG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~ 275 (312)
T cd07489 207 AAPGGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS 275 (312)
T ss_pred EcCCCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc
Confidence 9999999999876522 58999999999999999999999999 99999999999999999874322111
Q ss_pred cccCCCCCCCCCcccCCcccccccCCCCe
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDPGL 636 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~~l 636 (781)
....+++..++|||+||+.+|++..-
T Consensus 276 ---~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 276 ---ALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred ---cccCCCCHhhcCcceeeHHHHhcCCc
Confidence 11124677899999999999999643
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=393.36 Aligned_cols=249 Identities=27% Similarity=0.324 Sum_probs=203.8
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986421110 00000
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCC
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGV 294 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~ 294 (781)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGA 107 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCC
Confidence 012445778999999999998742 23589999999999999876542 2457889999999999999
Q ss_pred cEEEecCCCCCC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEe
Q 047013 295 DIISASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIK 373 (781)
Q Consensus 295 dVIN~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~ 373 (781)
+|||||||.... ......+..++..+.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 171 (267)
T cd07476 108 HIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------- 171 (267)
T ss_pred CEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------
Confidence 999999997632 234456788888999999999999999998777777788999999984321
Q ss_pred eeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCC
Q 047013 374 GASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 374 g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCC
Q 047013 454 EDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533 (781)
Q Consensus 454 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 533 (781)
+.++.||+||+.. .||||+|||.
T Consensus 172 ----------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~ 194 (267)
T cd07476 172 ----------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGE 194 (267)
T ss_pred ----------------------------------------------------CCeeeecCCCCCC-----CCceEEecCC
Confidence 3567899999764 3889999999
Q ss_pred cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCCC
Q 047013 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD----WSPAAIKSAIMTTATTEDSS 603 (781)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lt~~~ik~~L~~TA~~~~~~ 603 (781)
+|+++.+.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||++++..
T Consensus 195 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 195 NILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999988764 7999999999999999999999999887 89999999999999998543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=382.61 Aligned_cols=238 Identities=26% Similarity=0.359 Sum_probs=193.4
Q ss_pred eEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 145 VIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
|+|||||||||.+||+|+++. +..+++.. ....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~~--------------------------~~~~~~~~-------------------~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV--------------------------IARLFFAG-------------------PGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc--------------------------cccccCCC-------------------CCCCCC
Confidence 789999999999999997541 11111110 134567
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.+|||||||||+|.... . .||||+|+|+.+|++...+....++..++++||+||++.|++|||||||..
T Consensus 36 ~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~ 104 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP 104 (239)
T ss_pred CCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 89999999999998521 1 699999999999999865322246788999999999999999999999975
Q ss_pred CCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCC
Q 047013 305 PKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSL 383 (781)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (781)
. ...+..++.++.++|++||+||||+|... ..++...+++|+||+++.+
T Consensus 105 ~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------- 154 (239)
T cd05561 105 P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------- 154 (239)
T ss_pred C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------
Confidence 2 34677888899999999999999999753 3455667899999984322
Q ss_pred CCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccccccc
Q 047013 384 TQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMV 463 (781)
Q Consensus 384 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 463 (781)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCC
Q 047013 464 HFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEY 543 (781)
Q Consensus 464 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 543 (781)
+.++.||++|+.. ||.|||++|+++.+.+
T Consensus 155 ------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~- 183 (239)
T cd05561 155 ------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG- 183 (239)
T ss_pred ------------------------------------------CCccccCCCCCcc--------eEEccccceecccCCC-
Confidence 4677899999987 9999999999977653
Q ss_pred CCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccC
Q 047013 544 GPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623 (781)
Q Consensus 544 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 623 (781)
.|..++|||||||||||++|||+|++| ++++|||++|++||++++..+ .+..|||
T Consensus 184 ------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~------------~d~~~G~ 238 (239)
T cd05561 184 ------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG------------RDPVFGY 238 (239)
T ss_pred ------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC------------cCCCcCC
Confidence 799999999999999999999999999 999999999999998874332 3468898
Q ss_pred C
Q 047013 624 G 624 (781)
Q Consensus 624 G 624 (781)
|
T Consensus 239 G 239 (239)
T cd05561 239 G 239 (239)
T ss_pred C
Confidence 7
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=391.45 Aligned_cols=292 Identities=37% Similarity=0.471 Sum_probs=217.9
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||+|||++||+|.+.. .++.++...++|............. ..+......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRPY--PSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCccccccc--ccccccCCC
Confidence 899999999999999999998531 1233444444444321100000000 000011234
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecC
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASL 301 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~Sl 301 (781)
.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...+++++|+|+++++++||||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S~ 127 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLSL 127 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 56899999999999998643 22458999999999999998554 47889999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeec
Q 047013 302 GSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAE 379 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~ 379 (781)
|.... ...+.+..++..+.++|+++|+||||+|...... +...+++|+|||+....
T Consensus 128 g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------- 185 (295)
T cd07474 128 GSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------- 185 (295)
T ss_pred CCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------
Confidence 98732 2456788888999999999999999998765444 44678999999853110
Q ss_pred cCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccc
Q 047013 380 KGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNIS 459 (781)
Q Consensus 380 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 459 (781)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC-CCCCCCCCCCccCeeeeCCCcEEee
Q 047013 460 LNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA-RGPNLIDPAILKPDVIAPGVDIIAA 538 (781)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs-~Gp~~~~~~~~KPDI~APG~~I~sa 538 (781)
.........|++ .|+.. ...+||||+|||++|+++
T Consensus 186 ------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~ 221 (295)
T cd07474 186 ------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMST 221 (295)
T ss_pred ------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEee
Confidence 000123334444 45555 788999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCC
Q 047013 539 FTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATP 618 (781)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 618 (781)
+.... ..|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++
T Consensus 222 ~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~ 282 (295)
T cd07474 222 APGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPV 282 (295)
T ss_pred ccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCCh
Confidence 87631 278999999999999999999999999999999999999999998754321 12345
Q ss_pred CcccCCccccccc
Q 047013 619 FAYGAGHVNPNSA 631 (781)
Q Consensus 619 ~~~G~G~in~~~A 631 (781)
..+|+|+||+.+|
T Consensus 283 ~~~G~G~l~~~~A 295 (295)
T cd07474 283 SRQGAGRVDALRA 295 (295)
T ss_pred hccCcceeccccC
Confidence 7899999999887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=380.81 Aligned_cols=245 Identities=29% Similarity=0.389 Sum_probs=196.3
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCC-CC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTT-SI 222 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 222 (781)
||+||||||||+++||+|... ....+.++.+.++|.++ ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999522 11123456666666543 112 36
Q ss_pred CCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCC
Q 047013 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLG 302 (781)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG 302 (781)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++|+.+.|++|||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G 113 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLG 113 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 788999999999999852 235899999999999987543311 245667899999999999999999999
Q ss_pred CCCCCCC------------CChHHHHHHHHHhCCCEEEEecCCCCCCC---CCccCCCCceEEecccCCceeeeeeEEeC
Q 047013 303 SKPKEHF------------ESSVAVGSFHAMMHGILVVASAGNSGPAE---KTVDNVPPWVLTVGASTTDREFSSYVTLG 367 (781)
Q Consensus 303 ~~~~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgA~~~d~~~~~~~~~~ 367 (781)
....... ...+..++..+.++|+++|+||||+|... ..++...+++|+|||.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------- 182 (261)
T cd07493 114 YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------- 182 (261)
T ss_pred cCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----------
Confidence 8732111 13467788889999999999999999763 345556789999998432
Q ss_pred CceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEE
Q 047013 368 NKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGM 447 (781)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~ 447 (781)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCe
Q 047013 448 ILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPD 527 (781)
Q Consensus 448 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 527 (781)
.+.++.||++||+. ++++|||
T Consensus 183 ---------------------------------------------------------~~~~~~~S~~G~~~--~~~~~pd 203 (261)
T cd07493 183 ---------------------------------------------------------NGNKASFSSIGPTA--DGRLKPD 203 (261)
T ss_pred ---------------------------------------------------------CCCCCccCCcCCCC--CCCcCCc
Confidence 14678899999988 8999999
Q ss_pred eeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 528 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
|+|||.+|++....+ .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 204 i~a~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 204 VMALGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEecCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999855442 7899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=380.69 Aligned_cols=247 Identities=30% Similarity=0.386 Sum_probs=194.7
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|||||+|||++||+|.+. |.+.... . +...++..+.. .....+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~----------~------~~~~~~~~d~~--------~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG----------S------ADHDYNWFDPV--------GNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC----------C------cccccccccCC--------CCCCCC
Confidence 89999999999999999999864 1110000 0 00000000000 001245
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh----------
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH---------- 291 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~---------- 291 (781)
.|..+|||||||||+|.... +...||||+|+|+.+|+++... +...+++++++|+++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhcccccccccc
Confidence 67889999999999987522 2237999999999999998765 778899999999875
Q ss_pred --cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---ccCCCCceEEecccCCceeeeeeEEe
Q 047013 292 --DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 292 --~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+|||++.+
T Consensus 116 ~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 116 PDLAPDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred cccCCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 789999999998732 24456667778889999999999999865433 44567899999984322
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.++.||++||.. .+++||
T Consensus 185 -----------------------------------------------------------~~~~~~S~~g~~~--~~~~~~ 203 (264)
T cd07481 185 -----------------------------------------------------------DVLADFSSRGPST--YGRIKP 203 (264)
T ss_pred -----------------------------------------------------------CCCccccCCCCCC--CCCcCc
Confidence 4778999999998 799999
Q ss_pred eeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 047013 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD--WSPAAIKSAIMTTAT 598 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lt~~~ik~~L~~TA~ 598 (781)
||+|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 204 dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 204 DISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999998764 7899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=377.04 Aligned_cols=333 Identities=24% Similarity=0.366 Sum_probs=257.6
Q ss_pred ccCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhcc------------------ccEEEEec---ccee
Q 047013 24 FTAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAA------------------GLIFHSYG---RYIN 82 (781)
Q Consensus 24 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------~~i~~~y~---~~~~ 82 (781)
.....+|||.|++... +...+.|.++++.......... ..+.+.|. .+|+
T Consensus 77 ~~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~ 147 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFR 147 (501)
T ss_pred cccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhh
Confidence 4567899999996554 3666777777777654322100 01333343 3788
Q ss_pred eEEEEeCHHHHHHHhcCCCeEEEEEcceeccc--------ccCCccccCcccCCCC----CCccccccCCCCCceEEEEe
Q 047013 83 GFGAVLEEEHAKQIARHPEVVSVFLEEGIDLH--------TTRSWEFLGLEKDNQI----PPDSAWNKARFGEDVIIGNL 150 (781)
Q Consensus 83 g~s~~l~~~~i~~L~~~~~V~~V~~~~~~~~~--------~~~s~~~~g~~~~~~~----~~~~~w~~~~~G~gv~VaVI 150 (781)
|....++.+-+..++++|-++.++++..++.. +..+|.+..+....+. ....+++ -..|+||...|+
T Consensus 148 ~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~ 226 (501)
T KOG1153|consen 148 GYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVL 226 (501)
T ss_pred ccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEe
Confidence 88889999999999999999999998777543 3334443333322110 1012222 238999999999
Q ss_pred cCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCcccc
Q 047013 151 DSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTH 230 (781)
Q Consensus 151 DtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGTh 230 (781)
||||+.+||+|.++ +.|- .|-. | .....|++|||||
T Consensus 227 DTGVni~H~dFegR------a~wG-a~i~-----------------------------------~--~~~~~D~nGHGTH 262 (501)
T KOG1153|consen 227 DTGVNIEHPDFEGR------AIWG-ATIP-----------------------------------P--KDGDEDCNGHGTH 262 (501)
T ss_pred cccccccccccccc------eecc-cccC-----------------------------------C--CCcccccCCCcce
Confidence 99999999999876 1221 1100 0 1145789999999
Q ss_pred ccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc---------CCcEEEecC
Q 047013 231 TLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD---------GVDIISASL 301 (781)
Q Consensus 231 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---------g~dVIN~Sl 301 (781)
|||+|+++. .|||.+++|+++||++++| .+..+++++++|++++. +..|.|||+
T Consensus 263 ~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSl 325 (501)
T KOG1153|consen 263 VAGLIGSKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSL 325 (501)
T ss_pred eeeeeeccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEec
Confidence 999999986 6889999999999999998 69999999999999976 579999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccC-CCCceEEecccCCceeeeeeEEeCCceEEeeeeeecc
Q 047013 302 GSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDN-VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEK 380 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~ 380 (781)
|+. ..-.+..|++.|.+.||.+++||||+..+.|..+. .+..+|||||++..
T Consensus 326 Gg~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------- 378 (501)
T KOG1153|consen 326 GGF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------- 378 (501)
T ss_pred CCc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------
Confidence 997 34568889999999999999999999988776664 67899999996532
Q ss_pred CCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccc
Q 047013 381 GSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISL 460 (781)
Q Consensus 381 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 460 (781)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeec
Q 047013 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT 540 (781)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (781)
+.+|.||+||+|+ ||.|||++|+|+|.
T Consensus 379 ---------------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~i 405 (501)
T KOG1153|consen 379 ---------------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWI 405 (501)
T ss_pred ---------------------------------------------cchhhhcCcccee--------eeecCchhhhhhhh
Confidence 6899999999999 99999999999999
Q ss_pred CCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 047013 541 NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD---------WSPAAIKSAIMTTAT 598 (781)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------lt~~~ik~~L~~TA~ 598 (781)
+... ....+||||||+|||||++|..+.++|. .++.++|..++.-..
T Consensus 406 Gs~~-----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 406 GSNN-----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cCcc-----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8643 6788999999999999999999999883 378888888776654
|
|
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=383.40 Aligned_cols=270 Identities=22% Similarity=0.292 Sum_probs=189.3
Q ss_pred CceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccC---CC-CCccccCceeeeeEeccchhhhhh----ccCCCC--C
Q 047013 143 EDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQN---DT-NKAITCNRKLIGIRYISEGLIESC----RAMNSS--F 212 (781)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~---~~-~~~~~~n~ki~g~~~~~~~~~~~~----~~~~~~--~ 212 (781)
|+|+|||||||||++||+|++. .|....+. +- .+....-.+ +++++|...++... .+.+.. .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDD-VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcccc-ccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999875 23221111 00 111111112 23333432211100 000000 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
..+.+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++.... ....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g~----~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNGD----ERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCCC----cCHHHHHHHHHHHHHC
Confidence 0001122445789999999999999864321 248999999999999986433 6678899999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---cc--------CCCCceEEecccCCceeee
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VD--------NVPPWVLTVGASTTDREFS 361 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~d~~~~ 361 (781)
|++|||||||.... .....+..++..+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 223456778888999999999999999854221 11 1235677777643221
Q ss_pred eeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHh
Q 047013 362 SYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQ 441 (781)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 441 (781)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCC
Q 047013 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDP 521 (781)
Q Consensus 442 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 521 (781)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999973
Q ss_pred CCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 522 AILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+|||.|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 349999999999997764 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=379.52 Aligned_cols=264 Identities=26% Similarity=0.341 Sum_probs=203.4
Q ss_pred cccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCc
Q 047013 134 SAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFL 213 (781)
Q Consensus 134 ~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (781)
++|..+++|+||+|+|||||||++||+|.+..... +...+...+...... .
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~---- 51 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD------------------------GYDPAVNGYNFVPNV-G---- 51 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC------------------------CcccccCCccccccc-C----
Confidence 47999999999999999999999999998751100 000000110000000 0
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcC
Q 047013 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293 (781)
Q Consensus 214 ~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 293 (781)
+......|..||||||||||+|...+.....|+. .+.|+||+|+|+.+|++.... .+....++++|+|+++.|
T Consensus 52 --~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~g 124 (273)
T cd07485 52 --DIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADNG 124 (273)
T ss_pred --CcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHcC
Confidence 0012456778999999999999864432222221 346799999999999998765 478889999999999999
Q ss_pred CcEEEecCCCCCCCCCCChHHHHHHHHHhC-------CCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEe
Q 047013 294 VDIISASLGSKPKEHFESSVAVGSFHAMMH-------GILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 294 ~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
++|||||||......+...+..++..+.++ |+++|+||||++......+...+++|+||+++.+
T Consensus 125 ~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------- 195 (273)
T cd07485 125 AVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------- 195 (273)
T ss_pred CcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------
Confidence 999999999874334556677788888888 9999999999998777667778999999985422
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.++.||++|+..
T Consensus 196 -----------------------------------------------------------~~~~~~S~~g~~~-------- 208 (273)
T cd07485 196 -----------------------------------------------------------DNKASFSNYGRWV-------- 208 (273)
T ss_pred -----------------------------------------------------------CCcCccccCCCce--------
Confidence 4677899999987
Q ss_pred eeeeCCC-cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 047013 527 DVIAPGV-DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD-WSPAAIKSAIMTT 596 (781)
Q Consensus 527 DI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lt~~~ik~~L~~T 596 (781)
||+|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++++|||++|++|
T Consensus 209 ~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 89888765311 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=383.99 Aligned_cols=223 Identities=25% Similarity=0.337 Sum_probs=168.0
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecC
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASL 301 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~Sl 301 (781)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... +..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~-gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRL-GSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCC-CCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 478899999999999985332 3358999999999999986543 1123446799999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHH-HHhCCCEEEEecCCCCCCCCCccC---CCCceEEecccCCceeeeeeEEeCCceEEeeeee
Q 047013 302 GSKPKEHFESSVAVGSFH-AMMHGILVVASAGNSGPAEKTVDN---VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377 (781)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~ 377 (781)
|..........+..++.+ +.++||++|+||||+|+..+++.. ..+++|+|||+.....+...
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987421112234444444 457999999999999987776543 36899999995322100000
Q ss_pred eccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcc
Q 047013 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQN 457 (781)
Q Consensus 378 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 457 (781)
+.+
T Consensus 319 ----------y~~------------------------------------------------------------------- 321 (412)
T cd04857 319 ----------YSL------------------------------------------------------------------- 321 (412)
T ss_pred ----------ccc-------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEe
Q 047013 458 ISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537 (781)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (781)
.....+.++.||||||+. ++++||||+|||+.|.+
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 000135789999999998 99999999999999987
Q ss_pred eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 047013 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~ 600 (781)
.-.... ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 357 ~p~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 357 VPNWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cccCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 532211 2789999999999999999999985 478999999999999999763
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=370.90 Aligned_cols=257 Identities=33% Similarity=0.458 Sum_probs=204.5
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
|+||+|+|||+|||++||+|.+.... ...+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~--------------------------~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR--------------------------FADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc--------------------------cccccccc--------------cCCCCC
Confidence 89999999999999999999864110 00111000 012355
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc----CCcEE
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD----GVDII 297 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----g~dVI 297 (781)
.|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ .....++++||+|+++. +++||
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~Ii 110 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRVV 110 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceEE
Confidence 677899999999999986431 23458999999999999998776 46788999999999998 99999
Q ss_pred EecCCCCCC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC--CccCCCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 298 SASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEK--TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 298 N~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
|||||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 111 n~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------- 175 (264)
T cd07487 111 NLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------- 175 (264)
T ss_pred EeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence 999998742 346677888999999999999999999997765 44456789999999654320
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCc
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVD 534 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (781)
....++.||++||+. ++++||||+|||++
T Consensus 176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~ 204 (264)
T cd07487 176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN 204 (264)
T ss_pred -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence 002478899999998 89999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
|+++.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 205 i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 205 IVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9998654311 11122347899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=363.52 Aligned_cols=233 Identities=34% Similarity=0.468 Sum_probs=196.0
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
+|..+++|+||+|||||+||+++||+|.++ +...+.+.+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 777889999999999999999999999753 1222222211
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc--
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-- 292 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-- 292 (781)
....|..+|||||||||+|+. .||||+|+|+.+|+++..+ ....+.++++++|+++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~~ 115 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDAT 115 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhccc
Confidence 125678899999999999874 6999999999999998775 47788999999999986
Q ss_pred ---CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 ---GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 ---g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+|||++.+
T Consensus 116 ~~~~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------- 180 (255)
T cd04077 116 KRGKPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------- 180 (255)
T ss_pred ccCCCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------
Confidence 4899999999873 45677888889999999999999999765 3445577999999985432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++||+. ||
T Consensus 181 ---------------------------------------------------------~~~~~~S~~g~~~--------~i 195 (255)
T cd04077 181 ---------------------------------------------------------DARASFSNYGSCV--------DI 195 (255)
T ss_pred ---------------------------------------------------------CCccCcccCCCCC--------cE
Confidence 3578899999988 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~ 599 (781)
+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 196 ~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 196 FAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999887422 279999999999999999999999999999999999999999964
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=362.82 Aligned_cols=241 Identities=31% Similarity=0.414 Sum_probs=202.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC------------
Confidence 4789988 999999999999999999998432 12222223221
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 -----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 -----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYAADK 124 (260)
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 1235678899999999999875332 2358999999999999998765 47888999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|++|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+++.+
T Consensus 125 ~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------- 186 (260)
T cd07484 125 GAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------- 186 (260)
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------
Confidence 9999999999873 4456777888889999999999999998878888888999999984422
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++|+.. |++|||
T Consensus 187 -----------------------------------------------------~~~~~~s~~g~~~--------~~~apG 205 (260)
T cd07484 187 -----------------------------------------------------DKRASFSNYGKWV--------DVSAPG 205 (260)
T ss_pred -----------------------------------------------------CCcCCcCCCCCCc--------eEEeCC
Confidence 4677899999887 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
.+|+++.+.. .|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 206 ~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 206 GGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999987663 799999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=371.51 Aligned_cols=266 Identities=24% Similarity=0.222 Sum_probs=188.5
Q ss_pred EEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCC
Q 047013 146 IIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHN 225 (781)
Q Consensus 146 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~ 225 (781)
+|||||||||.+||+|.+. +.....+... .....|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------------~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------------PGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------------CCCcCCCC
Confidence 7999999999999999753 1111111100 01156889
Q ss_pred CccccccccccccccccccccccCCccccccCCCceEeecccccCCC-CCCCCChHHHHHHHHHhhhcC---CcEEEecC
Q 047013 226 GHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN-GANLCNAADIIAGFDVAIHDG---VDIISASL 301 (781)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~~~~~i~~ai~~a~~~g---~dVIN~Sl 301 (781)
||||||||||++.... .....|+||+|+|+.+|++...+ .....+..++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 12347999999999999998764 111356788999999999753 59999999
Q ss_pred CCCCCCCC--CChHHHHHHH-HHhCCCEEEEecCCCCCCCCCc------------cCCCCceEEecccCCceeeeeeEEe
Q 047013 302 GSKPKEHF--ESSVAVGSFH-AMMHGILVVASAGNSGPAEKTV------------DNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 302 G~~~~~~~--~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
|....... ...+..++.+ +.++|++||+||||+|...... +...+++|+|||++.+.........
T Consensus 111 G~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~ 190 (291)
T cd04847 111 GSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY 190 (291)
T ss_pred CCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc
Confidence 99742211 1245555544 5689999999999999765432 3356799999997654310000000
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.......+.||++||.. ++.+||
T Consensus 191 ------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KP 214 (291)
T cd04847 191 ------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKP 214 (291)
T ss_pred ------------------------------------------------------cccccccCCCccccCCCC--CCCcCC
Confidence 000012234499999998 999999
Q ss_pred eeeeCCCcEEeeecCCCCCC-----CCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 527 DVIAPGVDIIAAFTNEYGPS-----HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
||+|||++|.+......... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 215 Dl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 215 DVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999988654211000 0001122347999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=361.05 Aligned_cols=253 Identities=32% Similarity=0.403 Sum_probs=188.0
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSID 223 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 223 (781)
||+|||||+|||++||+|.+. +.....|..+.. .......|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~~-------------~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENRR-------------ISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCCC-------------CCCCCCCC
Confidence 799999999999999999753 111122221100 01224567
Q ss_pred CCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCC
Q 047013 224 HNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS 303 (781)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 303 (781)
..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||.
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g~ 108 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLGG 108 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88999999999999863 22347999999999999998764 778999999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHh-CCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 304 KPKEHFESSVAVGSFHAMM-HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.... ...+..++....+ +|++||+||||+|......+...+++|+|||++.+........
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------- 169 (254)
T cd07490 109 TYYS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------- 169 (254)
T ss_pred CCCC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------
Confidence 7432 5566666665554 6999999999999876667777899999999654421000000
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
........++.+|.. .....||||.|||.+|+++....
T Consensus 170 -----------------------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~ 207 (254)
T cd07490 170 -----------------------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA 207 (254)
T ss_pred -----------------------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC
Confidence 000122223334433 25568999999999999865321
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
. ....|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 208 ~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 N---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 1237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=365.50 Aligned_cols=207 Identities=29% Similarity=0.396 Sum_probs=168.6
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh---------
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI--------- 290 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--------- 290 (781)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45677899999999999986422 2348999999999999998776 57889999999998
Q ss_pred -hcCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 291 -HDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 291 -~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
.++++|||||||.... ....+..++..+.++|++||+||||++... ..++...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4578999999998732 145678888899999999999999999765 4556677899999985432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++|+.. ||
T Consensus 201 ---------------------------------------------------------~~~~~~S~~g~~v--------di 215 (285)
T cd07496 201 ---------------------------------------------------------GQRASYSNYGPAV--------DV 215 (285)
T ss_pred ---------------------------------------------------------CCcccccCCCCCC--------CE
Confidence 4678899999988 99
Q ss_pred eeCCCcEEeeecCCCCCC--CCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 529 IAPGVDIIAAFTNEYGPS--HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 216 ~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 216 SAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999998876532110 00111223478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=362.69 Aligned_cols=279 Identities=30% Similarity=0.342 Sum_probs=201.3
Q ss_pred cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCC
Q 047013 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPEN 217 (781)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~ 217 (781)
++++|+||+|||||||||++||+|.+.... . ....++++.....+.+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------~-------~~~~~~~~~~~~~~~~------------------ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------K-------TNLFHRKIVRYDSLSD------------------ 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------c-------CccCcccEEEeeccCC------------------
Confidence 588999999999999999999999764210 0 0112233333222211
Q ss_pred CCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEE
Q 047013 218 LTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297 (781)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVI 297 (781)
...|..+|||||||||+|...+... ...+.||||+|+|+.+|+++..+. ......+..+++++.+.+++||
T Consensus 49 --~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vi 119 (293)
T cd04842 49 --TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARIS 119 (293)
T ss_pred --CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEE
Confidence 2227899999999999998644321 114589999999999999886642 3566778999999999999999
Q ss_pred EecCCCCCCCCCCChHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 298 SASLGSKPKEHFESSVAVGSFHAM-M-HGILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 298 N~SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|||||..... .......++.++. + +|++||+||||+|.... ..+...+++|+|||++.+....
T Consensus 120 n~S~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 120 SNSWGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred eccCCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 9999998432 1233444444443 3 89999999999997665 4556789999999976543100
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
...|..
T Consensus 188 ---------------------------------~~~~~~----------------------------------------- 193 (293)
T cd04842 188 ---------------------------------GEGGLG----------------------------------------- 193 (293)
T ss_pred ---------------------------------cccccc-----------------------------------------
Confidence 000000
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
.......++.||++||+. ++++||||+|||
T Consensus 194 ------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG 223 (293)
T cd04842 194 ------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPG 223 (293)
T ss_pred ------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCC
Confidence 001135789999999998 899999999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH-----P---DWSPAAIKSAIMTTAT 598 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lt~~~ik~~L~~TA~ 598 (781)
++|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 224 ~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 224 TGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999754200 011122378999999999999999999999985 4 6667799999999984
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=361.03 Aligned_cols=248 Identities=27% Similarity=0.342 Sum_probs=182.0
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|+.+++|+||+||||||||+..|| |..+++. + + ..+..+
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~--------------~----~~~~~~------------ 52 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V--------------R----VVLAPG------------ 52 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c--------------e----eecCCC------------
Confidence 589999999999999999999999998 7643110 0 0 001000
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
......|+.||||||||++ .||||+|+|+.+|+++. ..+.+++||+||+++
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISL 103 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhc
Confidence 0124567889999999875 47899999999999863 456789999999999
Q ss_pred CCcEEEecCCCCCCCC----------CCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeee
Q 047013 293 GVDIISASLGSKPKEH----------FESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSS 362 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~ 362 (781)
+++|||||||...... ....+..++..|.++|++||+||||++. .+++..|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 9999999999863111 1234777888899999999999999874 46778899999999644320
Q ss_pred eEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhc
Q 047013 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA 442 (781)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 442 (781)
T Consensus 178 -------------------------------------------------------------------------------- 177 (298)
T cd07494 178 -------------------------------------------------------------------------------- 177 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC--CCCCCCC
Q 047013 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA--RGPNLID 520 (781)
Q Consensus 443 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs--~Gp~~~~ 520 (781)
......+++ +... ..
T Consensus 178 --------------------------------------------------------------g~~~~~~~~~~~~s~-~~ 194 (298)
T cd07494 178 --------------------------------------------------------------GARRASSYASGFRSK-IY 194 (298)
T ss_pred --------------------------------------------------------------CcccccccccCcccc-cC
Confidence 000011111 1111 12
Q ss_pred CCCccCee----------------eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCC
Q 047013 521 PAILKPDV----------------IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584 (781)
Q Consensus 521 ~~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 584 (781)
+++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|
T Consensus 195 ~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~ 269 (298)
T cd07494 195 PGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGL 269 (298)
T ss_pred CCCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCC
Confidence 56777877 4799998765532100 00112379999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccCC
Q 047013 585 SPAAIKSAIMTTATTED 601 (781)
Q Consensus 585 t~~~ik~~L~~TA~~~~ 601 (781)
++++||.+|++||+++.
T Consensus 270 ~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 270 SPERARSLLNKTARDVT 286 (298)
T ss_pred CHHHHHHHHHHhCcccC
Confidence 99999999999998764
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=362.39 Aligned_cols=265 Identities=29% Similarity=0.329 Sum_probs=184.9
Q ss_pred ccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCC
Q 047013 137 NKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPE 216 (781)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~ 216 (781)
..+++|+||+|||||+|||++||+|.+.. +....|.+.
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~--------------------------~~~~~~~~~---------------- 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD--------------------------ITTKSFVGG---------------- 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc--------------------------ccCcccCCC----------------
Confidence 35789999999999999999999998641 111112111
Q ss_pred CCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcE
Q 047013 217 NLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDI 296 (781)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dV 296 (781)
....|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+....+++||+|+++.|++|
T Consensus 40 --~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~V 105 (297)
T cd07480 40 --EDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADV 105 (297)
T ss_pred --CCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCE
Confidence 12467899999999999998633 2347999999999999987665 467778999999999999999
Q ss_pred EEecCCCCCCCC----------CCChHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCccC-----CCC
Q 047013 297 ISASLGSKPKEH----------FESSVAVGSFHA---------------MMHGILVVASAGNSGPAEKTVDN-----VPP 346 (781)
Q Consensus 297 IN~SlG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~~-----~~p 346 (781)
||||||...... ....+......+ .++|++||+||||+|........ ..+
T Consensus 106 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~ 185 (297)
T cd07480 106 ISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACP 185 (297)
T ss_pred EEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccc
Confidence 999999863111 111222222333 67999999999999864332211 112
Q ss_pred ceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEE
Q 047013 347 WVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILIC 426 (781)
Q Consensus 347 ~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 426 (781)
++++|+++...
T Consensus 186 ~~~~V~~V~~~--------------------------------------------------------------------- 196 (297)
T cd07480 186 SAMGVAAVGAL--------------------------------------------------------------------- 196 (297)
T ss_pred cccEEEEECCC---------------------------------------------------------------------
Confidence 33333332111
Q ss_pred ecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCC
Q 047013 427 YDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSR 506 (781)
Q Consensus 427 ~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 506 (781)
+
T Consensus 197 -------------------------------------------------------------------------------~ 197 (297)
T cd07480 197 -------------------------------------------------------------------------------G 197 (297)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred ccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCH
Q 047013 507 MTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586 (781)
Q Consensus 507 ~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~ 586 (781)
....|+++.+ ....||||+|||.+|+++...+ .|..++|||||||+|||++|||+|++|.+++
T Consensus 198 ~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~ 260 (297)
T cd07480 198 RTGNFSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGG 260 (297)
T ss_pred CCCCccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCH
Confidence 2222333322 2235789999999999988764 8999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCccccc
Q 047013 587 AAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPN 629 (781)
Q Consensus 587 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~ 629 (781)
.+++.+|+......... ..........+|+|++++.
T Consensus 261 ~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 261 RALAALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 88888877432221000 1122345568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=353.42 Aligned_cols=240 Identities=26% Similarity=0.345 Sum_probs=189.9
Q ss_pred eEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 145 VIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
|+|||||+|||++||+|++.. ++...+.+... .....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~------------------------~~~~~~~~~~~-----------------~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP------------------------KLVPGWNFVSN-----------------NDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccCc------------------------CccCCccccCC-----------------CCCCCCC
Confidence 689999999999999998630 01111111110 1135678
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.+|||||||||+|+..+. ..+.||||+|+|+.+|++...+ .+...++.++++|+++.+++|||||||..
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~~ 108 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGGS 108 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCCC
Confidence 999999999999986322 2358999999999999998765 47889999999999999999999999987
Q ss_pred CC-CCCCChHHHHHHHHHh-CCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 305 PK-EHFESSVAVGSFHAMM-HGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 305 ~~-~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.. ......+..++..+.. +|+++|+||||+|......+...+++|+|||++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------- 163 (242)
T cd07498 109 DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------- 163 (242)
T ss_pred CCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------
Confidence 32 2234567777778888 99999999999998776667788999999985422
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
+.+++||++||.. |++|||.++.......
T Consensus 164 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~ 192 (242)
T cd07498 164 -------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGR 192 (242)
T ss_pred -------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccc
Confidence 4678999999988 9999999998875442
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
.. ........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 193 ~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 193 GS----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cc----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11 111223478899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=353.25 Aligned_cols=244 Identities=21% Similarity=0.214 Sum_probs=177.4
Q ss_pred ccccccCC-CCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 133 DSAWNKAR-FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 133 ~~~w~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
..+|+... .|+||+|+|||+|||.+||+|.++... ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----------------------------~~~------------ 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----------------------------LIS------------ 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-----------------------------ccC------------
Confidence 47898754 599999999999999999999864110 000
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
.....|+.+|||||||||+|..+ -.| +.||||+|+|+.+|+++ .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR---------VSNTADAILDAAD 99 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC---------CCCHHHHHHHHHh
Confidence 01245778999999999999741 122 48999999999999975 2245556666665
Q ss_pred ----cCCcEEEecCCCCCCCC------CCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-------------CCCCce
Q 047013 292 ----DGVDIISASLGSKPKEH------FESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD-------------NVPPWV 348 (781)
Q Consensus 292 ----~g~dVIN~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~v 348 (781)
.++.+||||||...... ....+..++..+.++|+++|+||||++....... ...+++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 45778999999873211 2234556778888999999999999986422111 123568
Q ss_pred EEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEec
Q 047013 349 LTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD 428 (781)
Q Consensus 349 itVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (781)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 8888754221
Q ss_pred CCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcc
Q 047013 429 AKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508 (781)
Q Consensus 429 g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 508 (781)
...+
T Consensus 190 ----------------------------------------------------------------------------~~~~ 193 (277)
T cd04843 190 ----------------------------------------------------------------------------GHTR 193 (277)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 1237
Q ss_pred ccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----h-CCC
Q 047013 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----L-HPD 583 (781)
Q Consensus 509 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ 583 (781)
+.||++|+.. ||.|||++|+++....... ........|..++|||||||||||++|||++ + +|+
T Consensus 194 ~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~ 262 (277)
T cd04843 194 LAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTP 262 (277)
T ss_pred ccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 8999999987 9999999999998764311 0111112457899999999999999999975 3 499
Q ss_pred CCHHHHHHHHHhccc
Q 047013 584 WSPAAIKSAIMTTAT 598 (781)
Q Consensus 584 lt~~~ik~~L~~TA~ 598 (781)
|+++|||++|+.|++
T Consensus 263 lt~~~v~~~L~~t~~ 277 (277)
T cd04843 263 LTPIEMRELLTATGT 277 (277)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=343.74 Aligned_cols=227 Identities=35% Similarity=0.493 Sum_probs=188.4
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSID 223 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 223 (781)
||+|||||+||+++||+|.+. +...+.|.... .....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999753 11222222110 024567
Q ss_pred CCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCC
Q 047013 224 HNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS 303 (781)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 303 (781)
..+|||||||+|++.... ..+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||||||.
T Consensus 39 ~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g~ 106 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLGG 106 (229)
T ss_pred CCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 889999999999998632 2458999999999999998766 4667899999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccC
Q 047013 304 KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKG 381 (781)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~ 381 (781)
.. ....+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 107 ~~---~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 107 PS---DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 63 334567777888999999999999999776554 6678999999985432
Q ss_pred CCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcccccc
Q 047013 382 SLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLN 461 (781)
Q Consensus 382 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 461 (781)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecC
Q 047013 462 MVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTN 541 (781)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 541 (781)
+.++.||++|+.. |+.|||.+|+++.+.
T Consensus 160 --------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~ 187 (229)
T cd07477 160 --------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN 187 (229)
T ss_pred --------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC
Confidence 4667899999977 999999999999876
Q ss_pred CCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 542 EYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 542 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
+ .|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 188 ~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 N-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred C-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 4 78999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=347.59 Aligned_cols=250 Identities=30% Similarity=0.397 Sum_probs=191.1
Q ss_pred CceEEEEecCCCCcCCCCccCCCCCCCCCCCccc---ccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCC
Q 047013 143 EDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGT---CQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLT 219 (781)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 219 (781)
+||+|||||||||++||+|.++. |... +..+. ....+. .+.. ..+|+... ...
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~--~~~~~~-~~~~---~~~~~~~~-----------~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGI--DDDGNG-YVDD---IYGWNFVN-----------NDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCc--ccCCCC-cccC---CCcccccC-----------CCC
Confidence 68999999999999999998752 2211 11110 000000 0000 00111110 123
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEe
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISA 299 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~ 299 (781)
+..|..+|||||||||+|...++. .+.||||+|+|+.+|++...+ .++..+++++++++++.+++|||+
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEe
Confidence 567889999999999999864322 248999999999999998766 488899999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC---CCccC--CCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 300 SLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE---KTVDN--VPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 300 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
|||... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 127 S~G~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------- 186 (259)
T cd07473 127 SWGGGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------- 186 (259)
T ss_pred CCCCCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence 999873 256678888899999999999999998652 23333 34788999984322
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCc
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVD 534 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (781)
+.++.||++||. +||+.|||.+
T Consensus 187 ---------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~ 208 (259)
T cd07473 187 ---------------------------------------------------DALASFSNYGKK-------TVDLAAPGVD 208 (259)
T ss_pred ---------------------------------------------------CCcCcccCCCCC-------CcEEEeccCC
Confidence 466779999985 3599999999
Q ss_pred EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 535 IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+++..... .|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 209 ~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 209 ILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eEeccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99976543 7999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=342.64 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=120.2
Q ss_pred CCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCC
Q 047013 142 GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTS 221 (781)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (781)
+++|+|||||||||++||+|.++ +...+.|....... + ......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----~------~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----N------KVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----c------cCCCCC
Confidence 78999999999999999999853 12222222210000 0 001123
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCC---CCCChHHHHHHHHHhhhcCCcEEE
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA---NLCNAADIIAGFDVAIHDGVDIIS 298 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~---~~~~~~~i~~ai~~a~~~g~dVIN 298 (781)
.|..||||||||||+ |+||+|+|+.+|+++..+.+ ..++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578899999999995 56999999999999865421 135678899999999999999999
Q ss_pred ecCCCCCCCC---CCChHHHHHHHHHhCCCEEEEecCCCCCCCC-Cc--cCCCCceEEecccCC
Q 047013 299 ASLGSKPKEH---FESSVAVGSFHAMMHGILVVASAGNSGPAEK-TV--DNVPPWVLTVGASTT 356 (781)
Q Consensus 299 ~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgA~~~ 356 (781)
||||.....+ ....+..++.+|.++|++||+||||+|.... .+ +...+++|+|||++.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 9999873211 2566888899999999999999999997654 33 335689999999543
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=351.33 Aligned_cols=249 Identities=19% Similarity=0.217 Sum_probs=181.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||||+.||+|.++... ...+.|.+... +
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~------~--- 75 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP------D--- 75 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC------C---
Confidence 68999999999999999999999999999864110 01111221100 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
+ .....|..||||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 76 --~--~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~- 137 (297)
T cd04059 76 --P--TPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD- 137 (297)
T ss_pred --C--CCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-
Confidence 0 00113788999999999999863221 24899999999999998754 233455566665554
Q ss_pred CCcEEEecCCCCCCCC----CCChHHHHHHHHHh-----CCCEEEEecCCCCCCCCC--c--cCCCCceEEecccCCcee
Q 047013 293 GVDIISASLGSKPKEH----FESSVAVGSFHAMM-----HGILVVASAGNSGPAEKT--V--DNVPPWVLTVGASTTDRE 359 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~p~vitVgA~~~d~~ 359 (781)
.++|||||||...... .......++.++.. +|++||+||||+|..... . ....+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999873221 22234445555553 699999999999973222 1 1345889999985432
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
+.++.||++|+..
T Consensus 216 ------------------------------------------------------------------g~~~~~s~~g~~~- 228 (297)
T cd04059 216 ------------------------------------------------------------------GVRASYSEVGSSV- 228 (297)
T ss_pred ------------------------------------------------------------------CCCcCCCCCCCcE-
Confidence 4678899999988
Q ss_pred CCCCccCeeeeCCCc-------EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 047013 520 DPAILKPDVIAPGVD-------IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSA 592 (781)
Q Consensus 520 ~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~ 592 (781)
++.|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++
T Consensus 229 -------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~ 291 (297)
T cd04059 229 -------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHI 291 (297)
T ss_pred -------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHH
Confidence 99999987 666654420 126788999999999999999999999999999999999
Q ss_pred HHhccc
Q 047013 593 IMTTAT 598 (781)
Q Consensus 593 L~~TA~ 598 (781)
|++||+
T Consensus 292 L~~TA~ 297 (297)
T cd04059 292 LALTAR 297 (297)
T ss_pred HHHhcC
Confidence 999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=352.45 Aligned_cols=274 Identities=32% Similarity=0.477 Sum_probs=207.1
Q ss_pred EEEEecCCCCcCCCCcc-CCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCC
Q 047013 146 IIGNLDSGVWPESQSFT-DEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224 (781)
Q Consensus 146 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 224 (781)
+|||||||||++||+|. ++ ....++.+.+.|.++. . ......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~------~--------~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGN------P--------NPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTB------S--------TTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCC------C--------CcCccccC
Confidence 69999999999999997 32 0112233344444331 0 02356778
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh-hcCCcEEEecCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI-HDGVDIISASLGS 303 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~g~dVIN~SlG~ 303 (781)
.+|||||||||+|.. . .+ .....|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G~ 114 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFGS 114 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEEB
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCccccccccc
Confidence 899999999999986 2 11 22348999999999999977654 67888999999999 8899999999988
Q ss_pred C--CC-CCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC---ccCCCCceEEecccCCceeeeeeEEeCCceEEeeeee
Q 047013 304 K--PK-EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT---VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377 (781)
Q Consensus 304 ~--~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~ 377 (781)
. .. ......+..++..+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~--------------------- 173 (282)
T PF00082_consen 115 NSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN--------------------- 173 (282)
T ss_dssp EESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET---------------------
T ss_pred cccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc---------------------
Confidence 3 11 1222335566678889999999999999876653 3445588899997432
Q ss_pred eccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCcc
Q 047013 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQN 457 (781)
Q Consensus 378 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 457 (781)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEe
Q 047013 458 ISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIA 537 (781)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (781)
.+.++.||++|+.. .++++||||+|||.+|++
T Consensus 174 -----------------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~ 205 (282)
T PF00082_consen 174 -----------------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILS 205 (282)
T ss_dssp -----------------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEE
T ss_pred -----------------------------------------------cccccccccccccc-cccccccccccccccccc
Confidence 13668899997543 278999999999999998
Q ss_pred eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCC
Q 047013 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKAT 617 (781)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 617 (781)
.++.... ..|..++|||||||+|||++|||+|++|+|++++||.+|++||+++...+ ....
T Consensus 206 ~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~ 266 (282)
T PF00082_consen 206 AVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGY 266 (282)
T ss_dssp EETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSS
T ss_pred ccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCC
Confidence 8876420 25888999999999999999999999999999999999999999875211 2334
Q ss_pred CCcccCCcccccccCC
Q 047013 618 PFAYGAGHVNPNSALD 633 (781)
Q Consensus 618 ~~~~G~G~in~~~Av~ 633 (781)
...||||++|+.+|++
T Consensus 267 ~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 267 DNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHTTSBE-HHHHHH
T ss_pred CCCccCChhCHHHHhC
Confidence 5688999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=331.94 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=174.6
Q ss_pred ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccc-hhhhhhccCCCCCccCCCCCCCC
Q 047013 144 DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISE-GLIESCRAMNSSFLVPENLTTSI 222 (781)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~ 222 (781)
||+|||||||||++||+|++... ..+.+.. .+. .+.....
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------------------------~~~~~~~~~~~-------------~~~~~~~ 41 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------------------------DGEVTIDLEII-------------VVSAEGG 41 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------------------------ccccccccccc-------------cCCCCCC
Confidence 79999999999999999986411 0111100 000 0122456
Q ss_pred CCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCC
Q 047013 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLG 302 (781)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG 302 (781)
|..||||||||||++. +|+++|+.+|+++..+ .+..+.+++||+|++++|++|||||||
T Consensus 42 d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 42 DKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 7899999999999865 6999999999998776 578899999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCC
Q 047013 303 SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGS 382 (781)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (781)
.... .....+..++.++.++|+++|+||||++.... .+...+++|+||+.+.+.
T Consensus 101 ~~~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------ 154 (222)
T cd07492 101 GPGD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------ 154 (222)
T ss_pred CCCC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------
Confidence 8742 22345677888888999999999999986543 356678899999743221
Q ss_pred CCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccc
Q 047013 383 LTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNM 462 (781)
Q Consensus 383 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 462 (781)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 463 VHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
.. +.+++. +|+.|||.+|+++.+.+
T Consensus 155 --------------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~ 179 (222)
T cd07492 155 --------------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG 179 (222)
T ss_pred --------------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC
Confidence 11 112443 39999999999988763
Q ss_pred CCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 543 YGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 543 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 -------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=342.53 Aligned_cols=361 Identities=21% Similarity=0.302 Sum_probs=270.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchh------ccccEEEEeccceeeEEEEeCH-----HHHH
Q 047013 26 AKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEE------AAGLIFHSYGRYINGFGAVLEE-----EHAK 94 (781)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~i~~~y~~~~~g~s~~l~~-----~~i~ 94 (781)
-+.+|||.||..-.+ ..++..+++.+....- .+......|-..|.-+-++-.. -+|+
T Consensus 48 ve~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ie 115 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIE 115 (1033)
T ss_pred ecceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheee
Confidence 457899999998775 4555566665542221 1223334566667666665443 3479
Q ss_pred HHhcCCCeEEEEEcceeccccc------------CCcccc-Cc-------------ccCCC-----------CCCccccc
Q 047013 95 QIARHPEVVSVFLEEGIDLHTT------------RSWEFL-GL-------------EKDNQ-----------IPPDSAWN 137 (781)
Q Consensus 95 ~L~~~~~V~~V~~~~~~~~~~~------------~s~~~~-g~-------------~~~~~-----------~~~~~~w~ 137 (781)
+|..+|+|+.|.|.+.+..-.. ..-.++ |. ....+ -..+.+|+
T Consensus 116 rLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk 195 (1033)
T KOG4266|consen 116 RLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWK 195 (1033)
T ss_pred ehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHh
Confidence 9999999999999877643100 000000 00 00000 01267999
Q ss_pred cCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCC
Q 047013 138 KARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPEN 217 (781)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~ 217 (781)
.|+||++|+|||.|||+.-+||.|+.- .-..++++
T Consensus 196 ~GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------ 230 (1033)
T KOG4266|consen 196 KGYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------ 230 (1033)
T ss_pred ccccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------
Confidence 999999999999999999999999741 11111111
Q ss_pred CCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEE
Q 047013 218 LTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297 (781)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVI 297 (781)
.....|.-||||.|||+|||.. ...|.||+++|++.|||.+.. -...+.+++|++||+..+.||+
T Consensus 231 E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 231 EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceE
Confidence 1245678899999999999873 347889999999999998876 5789999999999999999999
Q ss_pred EecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCC--CceEEecccCCceeeeeeEEeCCceEEeee
Q 047013 298 SASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP--PWVLTVGASTTDREFSSYVTLGNKMVIKGA 375 (781)
Q Consensus 298 N~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVgA~~~d~~~~~~~~~~~~~~~~g~ 375 (781)
|+|+|++ ++.+.|+-.-+......+|++|.|+||+||-.++..+++ ..||.||.
T Consensus 296 NLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------- 351 (1033)
T KOG4266|consen 296 NLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------- 351 (1033)
T ss_pred eeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------
Confidence 9999998 567888877778888999999999999999888877754 35566663
Q ss_pred eeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCC
Q 047013 376 SIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRED 455 (781)
Q Consensus 376 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~ 455 (781)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC----CCCCccCeeeeC
Q 047013 456 QNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI----DPAILKPDVIAP 531 (781)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~AP 531 (781)
.+..+.++.|||||-+.. ..||+||||++-
T Consensus 352 ----------------------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 352 ----------------------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred ----------------------------------------------ccccchhhhhccCCcceeecCCcccccCCceEee
Confidence 222478999999997652 468999999999
Q ss_pred CCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 532 GVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
|.+|....... +...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...
T Consensus 386 G~~v~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 99998776553 788999999999999999999976 233468999999999999988533
Q ss_pred cccCCCCCCCCCcccCCcccccccCCC
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
.-++||+|++|+.++++-
T Consensus 449 ---------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 ---------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ---------chhhccCcchhHHHHHHH
Confidence 247899999999998873
|
|
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=346.58 Aligned_cols=207 Identities=28% Similarity=0.257 Sum_probs=154.5
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEe
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISA 299 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~ 299 (781)
...|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|+||++++++||||
T Consensus 48 ~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin~ 112 (294)
T cd07482 48 DIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVINL 112 (294)
T ss_pred cCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEEe
Confidence 456789999999999998742 25999999999999998776 357889999999999999999999
Q ss_pred cCCCCCCCCC--------CChHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------------ccCCCCceE
Q 047013 300 SLGSKPKEHF--------ESSVAVGSFHAMMHGILVVASAGNSGPAEKT----------------------VDNVPPWVL 349 (781)
Q Consensus 300 SlG~~~~~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vi 349 (781)
|||....... ...+..++..+.++|++||+||||+|..... .+...+++|
T Consensus 113 S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi 192 (294)
T cd07482 113 SLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVI 192 (294)
T ss_pred CCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceE
Confidence 9998632111 1345667777889999999999999964311 111234444
Q ss_pred EecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecC
Q 047013 350 TVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDA 429 (781)
Q Consensus 350 tVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 429 (781)
+|||+
T Consensus 193 ~Vga~--------------------------------------------------------------------------- 197 (294)
T cd07482 193 TVSAT--------------------------------------------------------------------------- 197 (294)
T ss_pred EEEee---------------------------------------------------------------------------
Confidence 44442
Q ss_pred CcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc
Q 047013 430 KIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS 509 (781)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 509 (781)
...+.++
T Consensus 198 -------------------------------------------------------------------------~~~~~~~ 204 (294)
T cd07482 198 -------------------------------------------------------------------------DNNGNLS 204 (294)
T ss_pred -------------------------------------------------------------------------CCCCCcC
Confidence 2235778
Q ss_pred cccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCC---C------CCCCCCcccceeeccccchhhHHHHHHHHHHHh
Q 047013 510 FFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPS---H------EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL 580 (781)
Q Consensus 510 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~---~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 580 (781)
.||++|+.. +|++|||+++........... . .......+.|..++|||||||+|||++|||+|+
T Consensus 205 ~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~ 277 (294)
T cd07482 205 SFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDK 277 (294)
T ss_pred ccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHH
Confidence 899998654 499999999853222111000 0 001123457899999999999999999999999
Q ss_pred CCCCCH-HHHHHHHHhc
Q 047013 581 HPDWSP-AAIKSAIMTT 596 (781)
Q Consensus 581 ~p~lt~-~~ik~~L~~T 596 (781)
+|.+++ .|||++|++|
T Consensus 278 ~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 278 NPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCCCCcHHHHHHHHhhC
Confidence 999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=334.26 Aligned_cols=244 Identities=26% Similarity=0.319 Sum_probs=187.0
Q ss_pred CCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCC
Q 047013 141 FGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTT 220 (781)
Q Consensus 141 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (781)
+|+||+|+|||+||+++||+|.+..... ..+..... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~--------------------------~~~~~~~~-------------~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA--------------------------SYYVAVND-------------AGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc--------------------------cccccccc-------------ccCCC
Confidence 6999999999999999999998642110 00000000 00124
Q ss_pred CCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEec
Q 047013 221 SIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300 (781)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~S 300 (781)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||||
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 110 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINNS 110 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEcc
Confidence 567889999999999998633 34589999999999999987531 2667889999999999999999999
Q ss_pred CCCCCCC------------CCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCcc---------CCCCceEEecccCCcee
Q 047013 301 LGSKPKE------------HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVD---------NVPPWVLTVGASTTDRE 359 (781)
Q Consensus 301 lG~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~p~vitVgA~~~d~~ 359 (781)
||..... .....+...+..+.++|+++|+||||++....... ...+++|+||+++.+
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~-- 188 (267)
T cd04848 111 WGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN-- 188 (267)
T ss_pred CCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC--
Confidence 9998422 14455677778888999999999999986543332 235788999985443
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcccc--ccCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF--FSARGPN 517 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~ 517 (781)
+.... ||++|+.
T Consensus 189 ------------------------------------------------------------------~~~~~~~~s~~~~~ 202 (267)
T cd04848 189 ------------------------------------------------------------------GTIASYSYSNRCGV 202 (267)
T ss_pred ------------------------------------------------------------------CCcccccccccchh
Confidence 12333 4888864
Q ss_pred CCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 047013 518 LIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597 (781)
Q Consensus 518 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA 597 (781)
. -.+++.|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.|++++||++|++||
T Consensus 203 ~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA 266 (267)
T cd04848 203 A-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTA 266 (267)
T ss_pred h-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhc
Confidence 3 23479999999999887311 2788999999999999999999999999999999999999998
Q ss_pred c
Q 047013 598 T 598 (781)
Q Consensus 598 ~ 598 (781)
+
T Consensus 267 ~ 267 (267)
T cd04848 267 T 267 (267)
T ss_pred C
Confidence 4
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.09 Aligned_cols=240 Identities=25% Similarity=0.330 Sum_probs=182.2
Q ss_pred CCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEecCCCC
Q 047013 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSK 304 (781)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 304 (781)
.-|||||||||+|+..+.. ...||||+|+|+.+++.+..- +...+...+.+|+..++++++||||||+|-.
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 4699999999999985432 357999999999999976543 1234566799999999999999999999988
Q ss_pred C-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccC---CCCceEEecccCCceeeeeeEEeCCceEEeeeeeecc
Q 047013 305 P-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDN---VPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEK 380 (781)
Q Consensus 305 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~ 380 (781)
. .+.....++..-..+.+.|+++|.||||+||.-.+++. ....+|.|||.-.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 3 12222334444444458999999999999999887775 34588999983221100
Q ss_pred CCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccc
Q 047013 381 GSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISL 460 (781)
Q Consensus 381 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 460 (781)
...|.++
T Consensus 441 ----~a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ----QAEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred ----Hhhhhhh---------------------------------------------------------------------
Confidence 0000000
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeec
Q 047013 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT 540 (781)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (781)
..-...+..|||||||. ||.+--.|+|||+.|.+--.
T Consensus 448 -----------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~ 484 (1304)
T KOG1114|consen 448 -----------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ 484 (1304)
T ss_pred -----------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCch
Confidence 00024688999999999 99999999999999976533
Q ss_pred CCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCC
Q 047013 541 NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKA 616 (781)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 616 (781)
... ..-..|.|||||+|+++|++|||++ .+-.|||..||.+|++||.+++..
T Consensus 485 ~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------- 540 (1304)
T KOG1114|consen 485 YTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------- 540 (1304)
T ss_pred hhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------
Confidence 221 1567899999999999999999966 467899999999999999988542
Q ss_pred CCCcccCCcccccccCC
Q 047013 617 TPFAYGAGHVNPNSALD 633 (781)
Q Consensus 617 ~~~~~G~G~in~~~Av~ 633 (781)
.++.||.|++++++|.+
T Consensus 541 d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred chhccCcceeehhHHHH
Confidence 36899999999999998
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=289.56 Aligned_cols=192 Identities=22% Similarity=0.229 Sum_probs=142.0
Q ss_pred CCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHh--hhcCCcEEE
Q 047013 221 SIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVA--IHDGVDIIS 298 (781)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a--~~~g~dVIN 298 (781)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+..+++|+ .+.+++|||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~-------~~~~~~~~i~~~~~~~~gv~VIN 90 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK-------SNNGQWQECLEAQQNGNNVKIIN 90 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC-------CCCccHHHHHHHHHhcCCceEEE
Confidence 457899999999999997 35679999998666321 223466778887 567999999
Q ss_pred ecCCCCCCCC------CCChHHHHHHHHHhC-CCEEEEecCCCCCCCC-----CccCCCCceEEecccCCceeeeeeEEe
Q 047013 299 ASLGSKPKEH------FESSVAVGSFHAMMH-GILVVASAGNSGPAEK-----TVDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 299 ~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
||||...... ..+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 91 mS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------- 163 (247)
T cd07488 91 HSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------- 163 (247)
T ss_pred eCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-------
Confidence 9999873221 223466677776666 9999999999997532 22345688999998643310
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCC--CCCCCCCCCc
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSAR--GPNLIDPAIL 524 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~~ 524 (781)
....+.||++ +|+. ++..
T Consensus 164 ----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~~ 183 (247)
T cd07488 164 ----------------------------------------------------------RFFASDVSNAGSEINS--YGRR 183 (247)
T ss_pred ----------------------------------------------------------cceecccccccCCCCC--CCCc
Confidence 0123455654 4544 7789
Q ss_pred cCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHhc
Q 047013 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP------AAIKSAIMTT 596 (781)
Q Consensus 525 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~------~~ik~~L~~T 596 (781)
||||+|||++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+++
T Consensus 184 ~~di~APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 184 KVLIVAPGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeEEEEeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9999999999998 221 6889999999999999999999999888764 4566666665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=272.94 Aligned_cols=197 Identities=37% Similarity=0.488 Sum_probs=159.2
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh-hcCCcEEE
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI-HDGVDIIS 298 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~g~dVIN 298 (781)
...+..+||||||++|++..... ...|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 45578899999999999986332 127999999999999987765 467889999999999 89999999
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHhC-CCEEEEecCCCCCCCC---CccCCCCceEEecccCCceeeeeeEEeCCceEEee
Q 047013 299 ASLGSKPKEHFESSVAVGSFHAMMH-GILVVASAGNSGPAEK---TVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKG 374 (781)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g 374 (781)
||||..... ....+...+..+.++ |+++|+|+||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999988432 345577777788877 9999999999997765 4566789999999865431
Q ss_pred eeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCC
Q 047013 375 ASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc-cccCCCCCCCCCCCccCeeeeCCC
Q 047013 455 DQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS-FFSARGPNLIDPAILKPDVIAPGV 533 (781)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~ 533 (781)
... .++++|+ |||+.|||.
T Consensus 170 ----------------------------------------------------~~~~~~~~~~~--------~~~~~apg~ 189 (241)
T cd00306 170 ----------------------------------------------------TPASPSSNGGA--------GVDIAAPGG 189 (241)
T ss_pred ----------------------------------------------------CccCCcCCCCC--------CceEEeCcC
Confidence 122 4455554 559999999
Q ss_pred cEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047013 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTT 596 (781)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~T 596 (781)
++....... ...+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 190 ~~~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 190 DILSSPTTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CccCcccCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 998751111 1279999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=242.85 Aligned_cols=272 Identities=28% Similarity=0.403 Sum_probs=198.1
Q ss_pred cccccc--CCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCC
Q 047013 133 DSAWNK--ARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNS 210 (781)
Q Consensus 133 ~~~w~~--~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (781)
...|.. +.+|+||+|+|||+||+..||+|.+... ..++|.+.
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~---------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG---------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC----------
Confidence 467877 8999999999999999999999986410 00112211
Q ss_pred CCccCCCCC-CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCC-CCCCCCChHHHHHHHHH
Q 047013 211 SFLVPENLT-TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKP-NGANLCNAADIIAGFDV 288 (781)
Q Consensus 211 ~~~~p~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-~~~~~~~~~~i~~ai~~ 288 (781)
... ...|..+|||||+|++++.... ......|+||+++++.++++... + .....+++.+|++
T Consensus 174 ------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g---~~~~~~~~~~i~~ 237 (508)
T COG1404 174 ------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG---SGELSDVAEGIEG 237 (508)
T ss_pred ------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC---cccHHHHHHHHHH
Confidence 011 2578899999999999984211 11235899999999999999876 4 5777888999999
Q ss_pred hhhcC--CcEEEecCCCCCCCCCCChHHHHHHHHHhCC-CEEEEecCCCCCCCCC----ccCCC--CceEEecccCCcee
Q 047013 289 AIHDG--VDIISASLGSKPKEHFESSVAVGSFHAMMHG-ILVVASAGNSGPAEKT----VDNVP--PWVLTVGASTTDRE 359 (781)
Q Consensus 289 a~~~g--~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgA~~~d~~ 359 (781)
++..+ +++||||+|..........+..++..++..| +++|+|+||.+..... .+... +.+++|||.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--- 314 (508)
T COG1404 238 AANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--- 314 (508)
T ss_pred HHhcCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---
Confidence 99999 9999999998511223445667777787777 9999999999866521 11211 35666666321
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
.+..+.||++|+..
T Consensus 315 -----------------------------------------------------------------~~~~~~~s~~g~~~- 328 (508)
T COG1404 315 -----------------------------------------------------------------SDTVASFSNDGSPT- 328 (508)
T ss_pred -----------------------------------------------------------------CCccccccccCCCC-
Confidence 25778899999741
Q ss_pred CCCCccCeeeeCCCcEEe-----eecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHH
Q 047013 520 DPAILKPDVIAPGVDIIA-----AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHP-DWSPAAIKSAI 593 (781)
Q Consensus 520 ~~~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lt~~~ik~~L 593 (781)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..+
T Consensus 329 -----~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~ 392 (508)
T COG1404 329 -----GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLI 392 (508)
T ss_pred -----CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHH
Confidence 2299999999998 444421 1499999999999999999999999999 89999999998
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
..++.... .......++.|..+...+..
T Consensus 393 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 393 VTTAGLTP------------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred hhcccccc------------CCccccccccCccccccccc
Confidence 88876300 01123456667666555544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=217.51 Aligned_cols=310 Identities=18% Similarity=0.223 Sum_probs=190.3
Q ss_pred CccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 132 PDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 132 ~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
+..+|..+++||+|+++|+|.||||-||+++.+ ..-...++|..+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssn----------- 194 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSN----------- 194 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccC-----------
Confidence 468999999999999999999999999999743 111112222221
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
+|-|.+.....-.+.|||.|||-+++...++ .+| .|||.+.++..+|+++. ....++++|-....+
T Consensus 195 dpfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmghe 260 (629)
T KOG3526|consen 195 DPFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHE 260 (629)
T ss_pred CCCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCCC
Confidence 1122221111125899999999988776543 456 59999999999999985 456667665433322
Q ss_pred -cCCcEEEecCCCCCCCC-CCCh---HHHHHHHHHh-----CCCEEEEecCCCCCCC-CCccC--CCCceEEecccCCce
Q 047013 292 -DGVDIISASLGSKPKEH-FESS---VAVGSFHAMM-----HGILVVASAGNSGPAE-KTVDN--VPPWVLTVGASTTDR 358 (781)
Q Consensus 292 -~g~dVIN~SlG~~~~~~-~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~~--~~p~vitVgA~~~d~ 358 (781)
..++|.+-|||....+- .+.| ..+|+.+-++ .|-++|.|.|..|... +.... .+-|.|++-+.-.|.
T Consensus 261 p~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg 340 (629)
T KOG3526|consen 261 PSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG 340 (629)
T ss_pred CceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC
Confidence 35899999999874222 2222 2233333333 3558999999887532 22222 334555554421110
Q ss_pred eeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHH
Q 047013 359 EFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQR 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 438 (781)
. +....+.|.
T Consensus 341 -----------~-------------------------------nahydescs---------------------------- 350 (629)
T KOG3526|consen 341 -----------E-------------------------------NAHYDESCS---------------------------- 350 (629)
T ss_pred -----------c-------------------------------cccccchhh----------------------------
Confidence 0 001112221
Q ss_pred HHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 439 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
.-..+.||+-|-.+
T Consensus 351 ------------------------------------------------------------------stlastfsng~rnp 364 (629)
T KOG3526|consen 351 ------------------------------------------------------------------STLASTFSNGGRNP 364 (629)
T ss_pred ------------------------------------------------------------------HHHHHHhhcCCcCC
Confidence 12345677766544
Q ss_pred CCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 519 IDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 519 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
+- |+. .+. -++......||||.|||-.||+.||.++++|.|++.+++.+-.-|.+
T Consensus 365 --------et---gva--ttd------------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltsk 419 (629)
T KOG3526|consen 365 --------ET---GVA--TTD------------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSK 419 (629)
T ss_pred --------Cc---cee--eec------------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecc
Confidence 21 211 111 11125677899999999999999999999999999999998888776
Q ss_pred cCC-CCCCccccc--CCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccCCC
Q 047013 599 TED-SSKHPILDQ--VTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGY 654 (781)
Q Consensus 599 ~~~-~~g~~~~~~--~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~g~ 654 (781)
+.. .++.--... .....-.+.-||+|.+|+.+.+..+..+...+.- |-|..|.
T Consensus 420 rnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 420 RNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred cchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 532 111100000 2223345567999999998888766666666544 4576663
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-17 Score=179.54 Aligned_cols=101 Identities=25% Similarity=0.278 Sum_probs=79.8
Q ss_pred ccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc---CCcEEEecCCCCCCCC---CCChHHHHHHHHHhCC
Q 047013 251 GTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD---GVDIISASLGSKPKEH---FESSVAVGSFHAMMHG 324 (781)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~G 324 (781)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||...... +...+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 456899999999999997642 34577888888877 9999999999873221 2355777888899999
Q ss_pred CEEEEecCCCCCCCC-----------CccCCCCceEEecccCCce
Q 047013 325 ILVVASAGNSGPAEK-----------TVDNVPPWVLTVGASTTDR 358 (781)
Q Consensus 325 i~vV~AAGN~g~~~~-----------~~~~~~p~vitVgA~~~d~ 358 (781)
|+||+|+||+|.... .++...|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997654 2345789999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-11 Score=111.42 Aligned_cols=107 Identities=24% Similarity=0.252 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccccc-cccccEEEEehhhHHHHHHHHh
Q 047013 407 TQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISLNM-VHFLPTAYVNYKDGQSVYAYIY 484 (781)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~ 484 (781)
+.|...++...+++|||+||+||. .+.+|..+++++||.++|++|+.......... ...+|+++|+.++|+.|+++++
T Consensus 34 g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 34 GLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred cCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHh
Confidence 456666677778999999999999 99999999999999999999987543222211 2468999999999999999998
Q ss_pred cCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 485 NTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 485 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
+ . +++.+..+.. ..+...++.||||||+.
T Consensus 114 ~--~--~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 114 S--S--KKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred C--C--CeEEEEeccc-cccCCccccccCcCCCC
Confidence 8 3 4444343333 44567799999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=104.64 Aligned_cols=122 Identities=41% Similarity=0.635 Sum_probs=96.2
Q ss_pred EEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCC--cchHHHHHHHh
Q 047013 364 VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAK--IGDAKGQRAAQ 441 (781)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~--~~~~~~~~~~~ 441 (781)
+.++|+.++.|++++.... ..+++++..+. ........|.+..++..+++|||+||+|+. .+.+|..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHH
Confidence 6789999999999996543 35677763321 123345789999888899999999999987 66899999999
Q ss_pred cCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEE
Q 047013 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 442 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (781)
+||.|+|++++.............+|.+.|..++|+.|++|+++...++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999987644333333467999999999999999999988766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-09 Score=89.16 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=57.9
Q ss_pred cEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCc----hhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEE
Q 047013 29 PYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSV----EEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVS 104 (781)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~ 104 (781)
+|||.||+.... ......+.+++.+++.+. .....++.+.|...|+||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 599999998654 234566666666543321 34568999999999999999999999999999999999
Q ss_pred EEEcceeccc
Q 047013 105 VFLEEGIDLH 114 (781)
Q Consensus 105 V~~~~~~~~~ 114 (781)
|+|++.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999998764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-08 Score=87.77 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=63.0
Q ss_pred EEEecCCCCcEEEEEEEEecCCCCeeEEEEEecC--------Cc----------e-EEEEeecEEEEcCCCcEEEEEEEE
Q 047013 685 IAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEI--------VG----------V-SAVVEPITLNFTKYGEELTFKITF 745 (781)
Q Consensus 685 ~~~~~~~~~~~~~~~tv~n~~~~~~~y~~~~~~~--------~~----------~-~v~~~p~~~~~~~~g~~~~~~vt~ 745 (781)
|+|++.. ...++++||+|.|++..+|+++.... .| . .+...+..+++ ++|++++|+|++
T Consensus 1 i~L~d~~-~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti 78 (112)
T PF06280_consen 1 ISLKDTG-NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI 78 (112)
T ss_dssp EEEEEE--SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred CCccccC-CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence 4667775 67999999999999999999987610 11 1 56777888999 899999999999
Q ss_pred EeecCCCCCCCceEEEEEEEEcC-c-ceEEEEEE
Q 047013 746 SVKGNDKPVATDYVFGELVWSDG-F-HNVKSTIA 777 (781)
Q Consensus 746 ~~~~~~~~~~~~~~~G~i~~~~~-~-~~v~~P~~ 777 (781)
++...-....+.+++|||.|++. . +.++|||+
T Consensus 79 ~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 79 TPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp E--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 99311112457899999999874 4 48999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.5e-08 Score=88.98 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=72.4
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc---cc--cccccccEEEEehhhHHHH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI---SL--NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~---~~--~~~~~~p~~~i~~~~g~~l 479 (781)
...|.+..++..+++|||+||+||. .|.+|..+++++||.++|++|+...... .. .....+|+++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4789988888889999999999999 9999999999999999999997663211 11 1335699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 047013 480 YAYIYNTENPVAS 492 (781)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (781)
++++.++.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988766554
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.2e-08 Score=86.95 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=68.7
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc--cc--cccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI--SL--NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 479 (781)
....|...++...+++|||+|++||. +|.+|..+++++||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 45789999998889999999999999 9999999999999999999998753111 11 1335789999999999999
Q ss_pred HHHHhcC
Q 047013 480 YAYIYNT 486 (781)
Q Consensus 480 ~~~~~~~ 486 (781)
.+.+.+.
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9988743
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-08 Score=89.74 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=73.8
Q ss_pred ccCCCCCCCC--CCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc----cccccccEEEEehhhHH
Q 047013 405 DATQCKNGTI--DPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL----NMVHFLPTAYVNYKDGQ 477 (781)
Q Consensus 405 ~~~~c~~~~~--~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~ 477 (781)
....|.+... ++.++.|+|+|++||. +|.+|..+++++||.++|+||+...+.... .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4568998877 6678999999999999 999999999999999999999886322111 11247899999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 047013 478 SVYAYIYNTENPVASM 493 (781)
Q Consensus 478 ~l~~~~~~~~~~~~~i 493 (781)
.|++++.++.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988877653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=104.31 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
...|..+++|+++.|+|.|.|+...||+.... .-..+..++...-
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~----------- 67 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHD----------- 67 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCC-----------
Confidence 57899999999999999999999999998752 1112222222110
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
..|..-.+......|||-|++-.+...++.. . ..|+++++++..++++...- .+...+......
T Consensus 68 ~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--C------~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 68 NDPEPRCDGTNENKHGTRCAGCVAARANNLT--C------GVGVAYNATIGGIRMLAGCV-------SDAVEAPSLGFGP 132 (431)
T ss_pred CCcccccCCCCccccCCCCCcccccccCCCc--C------CCCcccCccccceeeeeeec-------ccceecccccCCC
Confidence 1122222344568999999999998862221 2 27999999999999986322 233333333232
Q ss_pred cCCcEEEecCCCCCCCC-CC---ChHHHHHHH-----HHhCCCEEEEecCCCCCCC
Q 047013 292 DGVDIISASLGSKPKEH-FE---SSVAVGSFH-----AMMHGILVVASAGNSGPAE 338 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~~-~~---~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~ 338 (781)
.-+++-..|||.....- .. .....+... ...+|-+.|+|.||.|...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 34899999999873111 11 112222322 2256788999999988544
|
|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=84.66 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=71.0
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc-ccc---cc----ccccccEEEEehhhH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ-NIS---LN----MVHFLPTAYVNYKDG 476 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~---~~----~~~~~p~~~i~~~~g 476 (781)
...|.+... ..+++|||+|++||. +|.+|..+++++||.++|+||+.... ... .. ....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467986543 568999999999999 99999999999999999999976531 111 11 234799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 047013 477 QSVYAYIYNTENPVASM 493 (781)
Q Consensus 477 ~~l~~~~~~~~~~~~~i 493 (781)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999998877655
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=84.59 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc----cccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL----NMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 479 (781)
....|.+.... .+++|||+||+|+. +|.+|..+++++||.|+|++|+........ .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888774 46999999999998 999999999999999999999876421111 1234699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 047013 480 YAYIYNTENPVAS 492 (781)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (781)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766654
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-08 Score=85.85 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=63.4
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCC----ccccccccccccEEEEehhhHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRED----QNISLNMVHFLPTAYVNYKDGQSV 479 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~----~~~~~~~~~~~p~~~i~~~~g~~l 479 (781)
....|....+...+++|||+||+||. +|.+|..+++++||.|+|++|.... ..........+|+++|+.++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 34567778888999999999999999 9999999999999999999992211 122233457899999999999999
Q ss_pred HHHH
Q 047013 480 YAYI 483 (781)
Q Consensus 480 ~~~~ 483 (781)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=84.37 Aligned_cols=86 Identities=27% Similarity=0.321 Sum_probs=68.9
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcc-------cccc-----ccccccEEEEe
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQN-------ISLN-----MVHFLPTAYVN 472 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~-----~~~~~p~~~i~ 472 (781)
...|.+..+ +.+++|||+|++||. +|.+|..+++++||.++|++|+..+.. .... +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999 999999999999999999998755320 1111 23579999999
Q ss_pred hhhHHHHHHHHhcCCCcEEE
Q 047013 473 YKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~ 492 (781)
..+|+.|++.+..+...++.
T Consensus 106 ~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred HHHHHHHHHHHHhCCceEEe
Confidence 99999999999987766543
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=84.00 Aligned_cols=85 Identities=22% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC-Cccc-c--ccccccccEEEEehhhHHHHHH
Q 047013 407 TQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE-DQNI-S--LNMVHFLPTAYVNYKDGQSVYA 481 (781)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~-~~~~-~--~~~~~~~p~~~i~~~~g~~l~~ 481 (781)
..|.+..+ +.+++|||+|++||. .|.+|..+++++||.++|+||+.. +... . ......+|+++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46877665 357999999999999 999999999999999999999873 2111 1 1123579999999999999999
Q ss_pred HHhcCCCcEEE
Q 047013 482 YIYNTENPVAS 492 (781)
Q Consensus 482 ~~~~~~~~~~~ 492 (781)
.+.++++.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998877664
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=84.79 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=71.8
Q ss_pred ccCCCCCCC--CCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccc--c----cccccccEEEEehhh
Q 047013 405 DATQCKNGT--IDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNIS--L----NMVHFLPTAYVNYKD 475 (781)
Q Consensus 405 ~~~~c~~~~--~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 475 (781)
....|.+.. +...+++|||+||+|+. .+.+|..+++++||.|+|++++....... . .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 456788877 77889999999999998 99999999999999999999987632111 1 133579999999999
Q ss_pred HHHHHHHHhcCCCcEEE
Q 047013 476 GQSVYAYIYNTENPVAS 492 (781)
Q Consensus 476 g~~l~~~~~~~~~~~~~ 492 (781)
|+.|++++.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987665543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=83.87 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=60.6
Q ss_pred CCCCCCceeEEEEEecCC-c-----chHHHHHHHhcCceEEEEecCC--CCcc-ccccc---cccccEEEEehhhHHHHH
Q 047013 413 TIDPEKVKGKILICYDAK-I-----GDAKGQRAAQAGAVGMILANSR--EDQN-ISLNM---VHFLPTAYVNYKDGQSVY 480 (781)
Q Consensus 413 ~~~~~~~~gkivl~~~g~-~-----~~~~~~~~~~~Ga~g~i~~~~~--~~~~-~~~~~---~~~~p~~~i~~~~g~~l~ 480 (781)
++.+.+++|||+|++||. . |.+|..+++++||.|+|+||+. .+.. ....+ ..+||+++|++++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 455668999999999999 7 9999999999999999999997 3211 12222 358999999999999999
Q ss_pred HHHhcC
Q 047013 481 AYIYNT 486 (781)
Q Consensus 481 ~~~~~~ 486 (781)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988654
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-07 Score=83.48 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=68.4
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc------cccccccEEEEehhhHHH
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL------NMVHFLPTAYVNYKDGQS 478 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 478 (781)
...|.+.. .+++|||+|++||. +|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788764 37899999999999 999999999999999999999765322111 113579999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 047013 479 VYAYIYNTENPVAS 492 (781)
Q Consensus 479 l~~~~~~~~~~~~~ 492 (781)
|++.+.++...+++
T Consensus 125 L~~~l~~g~~Vtv~ 138 (139)
T cd02132 125 LNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999988776553
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=80.37 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=68.2
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccccc-cccccccEEEEehhhHHHHHHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISL-NMVHFLPTAYVNYKDGQSVYAY 482 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~-~~~~~~p~~~i~~~~g~~l~~~ 482 (781)
....|.+...+..+++|||+|++||. .|.+|..+++++||.++|+||+........ .....+|.+.+ .++|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 45689877666668999999999999 999999999999999999999875432222 22234566666 9999999999
Q ss_pred HhcCCCcEEE
Q 047013 483 IYNTENPVAS 492 (781)
Q Consensus 483 ~~~~~~~~~~ 492 (781)
+.++...+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9888766554
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=80.31 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=68.8
Q ss_pred ccCCCCCCCCC--CC----CceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc-c----------ccccccc
Q 047013 405 DATQCKNGTID--PE----KVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI-S----------LNMVHFL 466 (781)
Q Consensus 405 ~~~~c~~~~~~--~~----~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~----------~~~~~~~ 466 (781)
....|.+.... +. ...++|+|++||. +|.+|..+|+++||.++|+||+...... . ......+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 34578865443 22 3789999999999 9999999999999999999998653211 1 1123469
Q ss_pred cEEEEehhhHHHHHHHHhcCCCcEEE
Q 047013 467 PTAYVNYKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (781)
|+++|+..+|+.|++.+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999998877654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-06 Score=100.72 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred ccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc-CCcEEEecCCCCC---CCC--CCChHHHHHHHHHhCC
Q 047013 251 GTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-GVDIISASLGSKP---KEH--FESSVAVGSFHAMMHG 324 (781)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-g~dVIN~SlG~~~---~~~--~~~~~~~a~~~a~~~G 324 (781)
.-..-+||+|+|..|-.-. .....+..|+++-... ---+|-.||+... ... +-+.+......|..+|
T Consensus 286 E~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeG 358 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEG 358 (1174)
T ss_pred hhhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccc
Confidence 3446789999999987621 2233333333332221 1133445666541 111 2233445556788999
Q ss_pred CEEEEecCCCCCCCCC--------ccCCCCceEEecc
Q 047013 325 ILVVASAGNSGPAEKT--------VDNVPPWVLTVGA 353 (781)
Q Consensus 325 i~vV~AAGN~g~~~~~--------~~~~~p~vitVgA 353 (781)
|.+++|+|.+|....+ .+..+|++++||-
T Consensus 359 ITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 359 ITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred eEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999876643 2346799999997
|
|
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=77.93 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=64.2
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc-c-ccc----cccccccEEEEehhhHH
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ-N-ISL----NMVHFLPTAYVNYKDGQ 477 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~-~-~~~----~~~~~~p~~~i~~~~g~ 477 (781)
....|.+. +..+++|||+|++||. +|.+|..+++++||.++|+||+.... . ... .....+|+++|+.++++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45679766 5688999999999999 99999999999999999999876532 1 111 22347999999999999
Q ss_pred HHHHHHhc
Q 047013 478 SVYAYIYN 485 (781)
Q Consensus 478 ~l~~~~~~ 485 (781)
.|..++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99887664
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=79.25 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=68.3
Q ss_pred cCCCCCCCCCC---CCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc-ccc-----ccccccEEEEehhh
Q 047013 406 ATQCKNGTIDP---EKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI-SLN-----MVHFLPTAYVNYKD 475 (781)
Q Consensus 406 ~~~c~~~~~~~---~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 475 (781)
...|.+....+ .++.|+|+|++||. +|.+|..+|+++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 78999999999999 9999999999999999999998654221 111 13489999999999
Q ss_pred HHHHHHHHhcCCC
Q 047013 476 GQSVYAYIYNTEN 488 (781)
Q Consensus 476 g~~l~~~~~~~~~ 488 (781)
|+.|+.++...+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-05 Score=72.49 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCCCCCceeEEEEEecCC---cchHHHHHHHhcCceEEEEecCCCCccccc-------cccccccEEEEehhhHHHHH
Q 047013 411 NGTIDPEKVKGKILICYDAK---IGDAKGQRAAQAGAVGMILANSREDQNISL-------NMVHFLPTAYVNYKDGQSVY 480 (781)
Q Consensus 411 ~~~~~~~~~~gkivl~~~g~---~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~-------~~~~~~p~~~i~~~~g~~l~ 480 (781)
+.++...+++|||+|++++. .+.+|..+++++||.|+|++|+........ .....+|++.|+.++|+.|.
T Consensus 35 ~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 35 PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 33455668999999999986 678999999999999999998765432111 22357999999999999999
Q ss_pred HHHhcCCCc
Q 047013 481 AYIYNTENP 489 (781)
Q Consensus 481 ~~~~~~~~~ 489 (781)
+.++.+...
T Consensus 115 ~~l~~g~~~ 123 (127)
T cd04819 115 RVAERNDTL 123 (127)
T ss_pred HHHhcCCce
Confidence 999875443
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=61.78 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=59.0
Q ss_pred CCCCceeEEEEEecCC-------cchHH-------HHHHHhcCceEEEEecCCCC-------ccccc-cccccccEEEEe
Q 047013 415 DPEKVKGKILICYDAK-------IGDAK-------GQRAAQAGAVGMILANSRED-------QNISL-NMVHFLPTAYVN 472 (781)
Q Consensus 415 ~~~~~~gkivl~~~g~-------~~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 472 (781)
+..+++|||+|++++. .|..| ...++++||.++|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 4568999999999865 45555 68999999999999986422 21111 222469999999
Q ss_pred hhhHHHHHHHHhcCCCcEEE
Q 047013 473 YKDGQSVYAYIYNTENPVAS 492 (781)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~ 492 (781)
.+++..|...+..+..++++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999987665543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=63.28 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCC------------------cccc-------cc--------
Q 047013 416 PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRED------------------QNIS-------LN-------- 461 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~------------------~~~~-------~~-------- 461 (781)
..+++|||+|+++|. .+.+|..+|+++||+|+|+|++... ++.. ..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 568999999999999 8999999999999999999987421 0000 00
Q ss_pred -ccccccEEEEehhhHHHHHHHHhc
Q 047013 462 -MVHFLPTAYVNYKDGQSVYAYIYN 485 (781)
Q Consensus 462 -~~~~~p~~~i~~~~g~~l~~~~~~ 485 (781)
....||+.-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013589999999999999998764
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.025 Score=50.00 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEEcCcceE
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNV 772 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~~~~~~v 772 (781)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.+++|+|.+ ....+ .+++.|.+...+..+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~----~~~~g-~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP----TKPLG-DYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe----CCCCc-eEEEEEEEEECCeEE
Confidence 6778889999999999999997654334557777766666 79999999999995 12333 468988887666788
Q ss_pred EEEEEEEe
Q 047013 773 KSTIAVKL 780 (781)
Q Consensus 773 ~~P~~~~~ 780 (781)
.+|+-.+.
T Consensus 94 ~i~v~a~~ 101 (102)
T PF14874_consen 94 EIPVKAEV 101 (102)
T ss_pred EEEEEEEE
Confidence 88887654
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=62.64 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=64.8
Q ss_pred CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCc------cccccccccccEEEEehhhHHHHHHHHhcCCC
Q 047013 416 PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQ------NISLNMVHFLPTAYVNYKDGQSVYAYIYNTEN 488 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~------~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 488 (781)
...++||++++.||. .|.+|+..++++||.++++.|+...- +........||+++|+.++++.+.+...++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 457899999999999 99999999999999999999996532 22233346899999999999999987777777
Q ss_pred cEEEEe
Q 047013 489 PVASMT 494 (781)
Q Consensus 489 ~~~~i~ 494 (781)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 766653
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.019 Score=53.37 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=41.8
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-c------------chHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-I------------GDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-~------------~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...++...+++|||+|+.++. . +..|..++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3567777888889999999999976 2 56899999999999999999754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.063 Score=44.88 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcEEEEEEEEecCCCC-eeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCce
Q 047013 693 GSMTVSRRLKNVGTPT-CTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDY 758 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~-~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~ 758 (781)
...+++++|+|.|..+ ...++++..|.|-++...|..+.--++|+++++++++++. .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp--~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP--ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE---TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC--CCCCCceE
Confidence 5788999999999755 4688888899999988888777544899999999999983 34444443
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.025 Score=52.93 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=41.9
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-------------------cchHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-------------------IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...++...|++|||+|+.+|. .+..|..+++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3468888888999999999998874 255799999999999999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.068 Score=50.65 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred cCCCCCCCCCCCCceeEEEEEecCC-------------------cchHHHHHHHhcCceEEEEecCCCCcc---cccccc
Q 047013 406 ATQCKNGTIDPEKVKGKILICYDAK-------------------IGDAKGQRAAQAGAVGMILANSREDQN---ISLNMV 463 (781)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~~~ 463 (781)
...|...++...+++|||+|+.++. .+..|..++.+.||.|+|+|++..... ......
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~ 112 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF 112 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence 4567777778889999999998762 346799999999999999999865321 111111
Q ss_pred ccccEEEEehhhHHHHHHH
Q 047013 464 HFLPTAYVNYKDGQSVYAY 482 (781)
Q Consensus 464 ~~~p~~~i~~~~g~~l~~~ 482 (781)
..-..+.++....+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 113 GGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CccceEEechHHHHHHhhh
Confidence 1222566666666665553
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.026 Score=52.80 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC
Q 047013 417 EKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 417 ~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
-+++|||+|++.|. .+..|..+|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 57999999999999 999999999999999999998753
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.049 Score=54.99 Aligned_cols=49 Identities=31% Similarity=0.330 Sum_probs=40.5
Q ss_pred cCCCCCCCCC-----CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCC
Q 047013 406 ATQCKNGTID-----PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRE 454 (781)
Q Consensus 406 ~~~c~~~~~~-----~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~ 454 (781)
...|...+++ ..+++|||+|+++|. .+..|..+|+++||.|+|+|++..
T Consensus 52 vnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 52 ANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred cCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 3456655443 568999999999998 778999999999999999999754
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.1 Score=39.09 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=53.5
Q ss_pred EEEecCCCCcEEEEEEEEecCCCCeeEEEEEec----CCceE--------------------EEEeecEEEEcCCCcEEE
Q 047013 685 IAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITE----IVGVS--------------------AVVEPITLNFTKYGEELT 740 (781)
Q Consensus 685 ~~~~~~~~~~~~~~~tv~n~~~~~~~y~~~~~~----~~~~~--------------------v~~~p~~~~~~~~g~~~~ 740 (781)
|.|.--.+++.+++++|+|.+++..+|.+++.. ..|+- +++ |..+++ +++|+++
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~ 96 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKT 96 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEE
Confidence 555444457899999999999999999998642 11110 222 344788 8999999
Q ss_pred EEEEEEeecCCCCCCCceEEEEEEEE
Q 047013 741 FKITFSVKGNDKPVATDYVFGELVWS 766 (781)
Q Consensus 741 ~~vt~~~~~~~~~~~~~~~~G~i~~~ 766 (781)
++++++. +...-.+.+-|-|.++
T Consensus 97 V~~~i~~---P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 97 VTFTIKM---PKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEc---CCCCcCCEEEeeEEEE
Confidence 9999998 4444455566777765
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.4 Score=38.42 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
-.-.++++|.|....+.+|+++++.++++++......+++ ++|++.++.|.+.+.
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 3567899999999999999999999889999665578888 899999999999984
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.41 Score=51.26 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=61.3
Q ss_pred CCCCCCCC---CCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccccc----ccccccEEEEehhhHHH
Q 047013 407 TQCKNGTI---DPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNISLN----MVHFLPTAYVNYKDGQS 478 (781)
Q Consensus 407 ~~c~~~~~---~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 478 (781)
.+|.+-.. ........++|+.||+ +|.+|..+|+++|..++|+||+......... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45664322 2456678899999999 9999999999999999999998765433222 23478999999999999
Q ss_pred HHHHHhcC
Q 047013 479 VYAYIYNT 486 (781)
Q Consensus 479 l~~~~~~~ 486 (781)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875543
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.22 Score=46.12 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=64.8
Q ss_pred ccCCCCCCCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc------ccc----ccccccEEEEeh
Q 047013 405 DATQCKNGTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI------SLN----MVHFLPTAYVNY 473 (781)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~----~~~~~p~~~i~~ 473 (781)
....|.... +.-+..|.+.|++||+ +|..|..++.++||.++|+.++...... ... +...+|++++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456776432 2346788999999999 9999999999999999999987653222 122 235799999999
Q ss_pred hhHHHHHHHHhcCCCcEEEE
Q 047013 474 KDGQSVYAYIYNTENPVASM 493 (781)
Q Consensus 474 ~~g~~l~~~~~~~~~~~~~i 493 (781)
.+|..+...+..-...-+.|
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred cceEEEehhHHHhCCccEEE
Confidence 98887777776655544433
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.1 Score=42.96 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCCCceeEEEEEecCC-cc-------------------hHHHHHHHhcCceEEEEecCC
Q 047013 412 GTIDPEKVKGKILICYDAK-IG-------------------DAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 412 ~~~~~~~~~gkivl~~~g~-~~-------------------~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
.++...|++||||++.++. .+ ..|...+.+.||.|+|++...
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3566789999999999765 22 249999999999999999764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.59 E-value=11 Score=41.78 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCcEEEEEEEEecCCCCe-eEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEEE
Q 047013 692 NGSMTVSRRLKNVGTPTC-TYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWS 766 (781)
Q Consensus 692 ~~~~~~~~tv~n~~~~~~-~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~~ 766 (781)
+...++...+.|.|+.+. .-++++..|.|-++.|+|.++-.-++||++++.+|+++. ....+++| +=+|.-+
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP--~~a~aGdY-~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP--EDAGAGDY-RITITAK 468 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC--CCCCCCcE-EEEEEEe
Confidence 467889999999998766 567889999999999999877555899999999999994 45566665 4445443
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=16 Score=40.67 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=45.0
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEe-cCCceEEEEee-----cEEEEcCCCcEEEEEEEEEee
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQIT-EIVGVSAVVEP-----ITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~-~~~~~~v~~~p-----~~~~~~~~g~~~~~~vt~~~~ 748 (781)
.+..|++++.|.|..+.+|.++.. .|++-...+.- +++.+ .+||+++|+|.+.++
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 567899999999999999999998 77776665543 34556 789999999999984
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=81.38 E-value=12 Score=33.91 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=48.5
Q ss_pred CcEEEEEEEEecCCCCeeEEEEEec---CC----ceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEEEE
Q 047013 693 GSMTVSRRLKNVGTPTCTYKAQITE---IV----GVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVW 765 (781)
Q Consensus 693 ~~~~~~~tv~n~~~~~~~y~~~~~~---~~----~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i~~ 765 (781)
...+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|++++++| +.. ...+.+....=+|.+
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~---~~~~~~~E~~yrl~~ 88 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG---SKLPIDRESLYRLSF 88 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC---SGS-SSS-EEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec---CCCCCCceEEEEEEE
Confidence 4568899999999888788777764 11 1257899999999 7999999999 664 343444444445666
Q ss_pred E
Q 047013 766 S 766 (781)
Q Consensus 766 ~ 766 (781)
+
T Consensus 89 ~ 89 (122)
T PF00345_consen 89 R 89 (122)
T ss_dssp E
T ss_pred E
Confidence 4
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 781 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-120 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-101 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-12 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 1e-10 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 1e-07 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 1e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 2e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 3e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 4e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 4e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 4e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 5e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 7e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 1e-06 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 2e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 2e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 4e-06 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 4e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 6e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 6e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 7e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 7e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 8e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 4e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 6e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 6e-05 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 6e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 8e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 8e-05 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 8e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 8e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 8e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 9e-05 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 1e-04 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 1e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 1e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 1e-04 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 2e-04 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 2e-04 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 2e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 2e-04 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 2e-04 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 2e-04 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 2e-04 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 2e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 3e-04 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 4e-04 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 7e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 651 bits (1681), Expect = 0.0
Identities = 234/674 (34%), Positives = 337/674 (50%), Gaps = 40/674 (5%)
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TT + +FL L P W + G+DVI+ LDSG+WPES SF D+GM IP RW+
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 175 GTCQNDTN-KAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLS 233
G C+ T A CNRKLIG Y ++G++ + +N + D +GHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSA------RDTDGHGTHCAS 109
Query: 234 TAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDG 293
G+F VS +G GTA+G +P+ARLA YK + +D+IA D A+ DG
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG----TFTSDLIAAMDQAVADG 165
Query: 294 VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
VD+IS S G + +E ++++ SF AMM G+LV ASAGN GP +++N PW+L V +
Sbjct: 166 VDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGT 413
TDR F+ +TLGN + I+G S+ P+I + + +
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFP-ARAFVRDSPVIYNKTLSDCSSEELLS------- 277
Query: 414 IDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNY 473
E + I+IC D + + +A I + S P VN
Sbjct: 278 -QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRS--ATFPNPGVVVNK 334
Query: 474 KDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533
K+G+ V Y+ N+ P A++T T + + + + SARGP+ I KPD++APGV
Sbjct: 335 KEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGV 394
Query: 534 DIIAAFTNEYGPSHEEFDPRR-VPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSA 592
I+AA+ + + Y + SGTSMA PH AGIA ++K HP+WSP+AI+SA
Sbjct: 395 LILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSA 454
Query: 593 IMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGL 652
+MTTA D+++ PI D + ATP GAGHV+PN ALDPGLVYD P DY+ LC L
Sbjct: 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL 514
Query: 653 GYNQSIIDLFTQPKEPFKCPGPFSIADFNYPS-IAVPNLVN----GSMTVSRRLKNVGTP 707
+ + + AD NYPS IA+ ++ R + NVG
Sbjct: 515 NFTEEQFKTIA--RSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG 572
Query: 708 TCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVW-- 765
TYKA++ + V P L F E+ ++ +T G+ G + W
Sbjct: 573 AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD---EGQSRNVGSITWVE 629
Query: 766 SDGFHNVKSTIAVK 779
+G H+V+S I
Sbjct: 630 QNGNHSVRSPIVTS 643
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 647 bits (1671), Expect = 0.0
Identities = 253/668 (37%), Positives = 364/668 (54%), Gaps = 53/668 (7%)
Query: 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQ 174
TTRSW+FLG P + +++ ++++G LD+G+WPES SF DEG P P +W+
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 175 GTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLST 234
GTC+ N CNRK+IG R G S P ++ D NGHGTHT ST
Sbjct: 54 GTCETSNN--FRCNRKIIGARSYHIGRPIS----------PGDVNGPRDTNGHGTHTAST 101
Query: 235 AGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGV 294
A G VS +LYG+G GTA+GG P AR+AAYKVCW +G C+ DI+A +D AI DGV
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDG---CSDTDILAAYDDAIADGV 157
Query: 295 DIISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353
DIIS S+G P+ +F ++A+GSFHA+ GIL SAGN GP T ++ PW+L+V A
Sbjct: 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGT 413
ST DR+F + V +GN +G SI + +YPL++G + C + +
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSIN---TFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKS 274
Query: 414 IDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNY 473
++P +KGKI++C + + GA G+++ ++ D S + LP++ ++
Sbjct: 275 VNPNLLKGKIVVCEAS--FGPHEFFKSLDGAAGVLMTSNTRDYADS----YPLPSSVLDP 328
Query: 474 KDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGV 533
D + YIY+ +P A++ S T N + SF S+RGPN ++KPD+ PGV
Sbjct: 329 NDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSF-SSRGPNRATKDVIKPDISGPGV 387
Query: 534 DIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593
+I+AA+ + R +N++SGTSM+CPH+ GIA VKT +P WSPAAIKSA+
Sbjct: 388 EILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSAL 444
Query: 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLG 653
MTTA+ ++ +P FAYG+GHVNP A+ PGLVYD DY+ +LCG G
Sbjct: 445 MTTASPMNARFNP---------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQG 495
Query: 654 YNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVN--GSMTVSRRLKNVGTPTCTY 711
YN + T + D NYPS + + + +R L +V TY
Sbjct: 496 YNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTY 555
Query: 712 KAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHN 771
+A I+ G++ V P L+F G+ +F +T + V LVWSDG H
Sbjct: 556 RAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS-----IKGFVVSASLVWSDGVHY 610
Query: 772 VKSTIAVK 779
V+S I +
Sbjct: 611 VRSPITIT 618
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-146
Identities = 108/656 (16%), Positives = 190/656 (28%), Gaps = 85/656 (12%)
Query: 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQND-----TNKAITC 187
+ KA G ++ +D+G +++ + + +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV 66
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
N K+ + HGTH G N
Sbjct: 67 NDKVAYYHD------------------YSKDGKTAVDQEHGTHVSGILSG----NAPSET 104
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS--KP 305
+G P+A+L +V A A + AI+ G +I+ S G+
Sbjct: 105 KEPYRLEGAMPEAQLLLMRVEIVNGLA--DYARNYAQAIRDAINLGAKVINMSFGNAALA 162
Query: 306 KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTDREFSS 362
+ +A G+ +V SAGN P VG +
Sbjct: 163 YANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLT 222
Query: 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGK 422
+ + + P+++ + + D + VKGK
Sbjct: 223 VASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGK 282
Query: 423 ILICYDAKIG-DAKGQRAAQAGAVGMILANSRED-QNISLNMVHFLPTAYVNYKDGQSVY 480
I + I K +A +AGAVG+++ ++++ I L V +P A+++ KDG +
Sbjct: 283 IALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK 342
Query: 481 AYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFT 540
+ + S FS+ G +KPD+ APG DI+++
Sbjct: 343 DNP----QKTITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVA 396
Query: 541 NEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA-TT 599
N Y +SGTSM+ P VAGI GL++ + P S + A
Sbjct: 397 NN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKV 443
Query: 600 EDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSII 659
SS + D+ +P GAG V+ A + D + L
Sbjct: 444 LMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVT--DKDNTSSKVHLNNVSDKF 501
Query: 660 DLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEIV 719
++ P + Y + + V+G
Sbjct: 502 EVTVNVHNKSDKP-----QELYYQATVQTDKVDGK-------------------HFALAP 537
Query: 720 GVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGELVWSDGFHNVKST 775
V + + K + + +GF K
Sbjct: 538 KVLYETSWQKITIPA-NSSKQVTVPIDASRFSKDLLAQ--MKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-33
Identities = 70/453 (15%), Positives = 140/453 (30%), Gaps = 83/453 (18%)
Query: 211 SFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK 270
+ N ++N HGTH T +N + G+ + A + KV
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIAAI-ANNEGVVGVM------PNQNANIHIVKVF-- 99
Query: 271 PNGANLCNAADIIAGFDVAI-HDGVDIISASLG-SKPKEHFESSVAVGSFHAMMHGILVV 328
N A ++ ++A D + G ++++ SLG S +++ +G+L++
Sbjct: 100 -NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLI 154
Query: 329 ASAGNSGPAEKTVDNVP---PWVLTVGASTTDREFSSYVTLGNKMVI------------- 372
A+AGN+G + + P V++V A ++ + +++ +++ I
Sbjct: 155 AAAGNAGDSSY---SYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTV 211
Query: 373 -KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKI 431
+G F + + ++ +
Sbjct: 212 GEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271
Query: 432 GDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVA 491
K + G G + Y N ++ + + +
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACK-TAGAKGIIVYSNSALPGLQNPFLVDANSDIT 330
Query: 492 SMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFD 551
+ S+ + + + G + V G
Sbjct: 331 VPSVSVDRATGL-----ALKAKLGQST--------TVSNQGNQ----------------- 360
Query: 552 PRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQV 611
Y +GTSMA PHV+G+A LV + HP+ S + +++A+ TA
Sbjct: 361 ----DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADD------------ 404
Query: 612 TGQKATPFAYGAGHVNPNSALDPGLVYDLGPGD 644
G G +N +A GP D
Sbjct: 405 LSVAGRDNQTGYGMINAVAAKAYLDESCTGPTD 437
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 49/137 (35%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
FS+RGP D + KP+V+APG IIAA P Y GT+MA PHV
Sbjct: 312 FSSRGPT-ADNRL-KPEVVAPGNWIIAA----RASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 571 AGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNS 630
AGIA L+ HP W+P +K+A++ TA V + AYGAG VN
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADI-----------VKPDEIADIAYGAGRVNAYK 414
Query: 631 ALDPGLVYDLGPGDYLA 647
A L Y++
Sbjct: 415 AAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 74/316 (23%), Positives = 116/316 (36%), Gaps = 73/316 (23%)
Query: 66 VEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEE--GI-----DLHTTRS 118
++ I ++Y I ++ + IA + + G+ D +
Sbjct: 55 LDFLGAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVA 113
Query: 119 WEFLGLEK-DNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTC 177
E GL++ Q+ + WN G + IG +D+G+
Sbjct: 114 VETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-------------- 159
Query: 178 QNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGG 237
+ + + +++ TT D NGHGTH S A G
Sbjct: 160 -----------KVIGWVDFVN------------------GKTTPYDDNGHGTHVASIAAG 190
Query: 238 SFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI----HDG 293
+ G KG +P A+L KV NG + +DII G D A+ G
Sbjct: 191 TG-------AASNGKYKGMAPGAKLVGIKVL---NGQGSGSISDIINGVDWAVQNKDKYG 240
Query: 294 VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVLT 350
+ +I+ SLGS S++ +A G++VV +AGNSGP + TV P V+T
Sbjct: 241 IKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTV-GSPAAASKVIT 299
Query: 351 VGASTTDRE---FSSY 363
VGA FSS
Sbjct: 300 VGAVDKYDVITDFSSR 315
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 28/139 (20%)
Query: 496 SITEFNKIWSRMTSFFSARGPNLIDPAIL----KPDVIAPGVDIIAAFTNEYGPSHEEFD 551
++ + + + +S+RG + ++ APG + + + N
Sbjct: 191 ALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------- 242
Query: 552 PRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQV 611
YN +SGTSMA PHV+G+A + +P S ++S + A + +D
Sbjct: 243 -----YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKS--------VDIK 289
Query: 612 TGQKATP---FAYGAGHVN 627
G A +A G G
Sbjct: 290 GGYGAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 7e-17
Identities = 50/158 (31%), Positives = 66/158 (41%), Gaps = 32/158 (20%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH TA S+ + YG A P A L AYKV + + DI
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGI---YGVA----PDADLWAYKVL---LDSGSGYSDDI 116
Query: 283 IAGFDVAIHDGV-----DIISASLG-SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGP 336
A A IIS SLG S S+V +A G+L+VA+AGNSG
Sbjct: 117 AAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGY 172
Query: 337 AEKTVDNVP---PWVLTVGASTTDRE--------FSSY 363
++ T+ P P + V A ++ +SS
Sbjct: 173 SQGTIG-YPGALPNAIAVAALENVQQNGTYRVADYSSR 209
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 5e-22
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 36/125 (28%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS+ GP + DV+APGV I + Y +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
HVAG A L+ + HP+W+ ++S++ T T + F YG G +N
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTT---------------KLGDSFYYGKGLINV 270
Query: 629 NSALD 633
+A
Sbjct: 271 QAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 47/157 (29%), Positives = 64/157 (40%), Gaps = 22/157 (14%)
Query: 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNG 273
VP D+N HGTH T G G +P A L A KV
Sbjct: 51 VPSETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVL---GA 98
Query: 274 ANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGN 333
+ II G + AI + +D+I+ SLG + AV A+ G++VVA+AGN
Sbjct: 99 DGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA-AVD--KAVASGVVVVAAAGN 155
Query: 334 SGP-AEKTVDNVP---PWVLTVGASTTDRE---FSSY 363
G + P P V+ VGA + + FSS
Sbjct: 156 EGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 7e-22
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 36/124 (29%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS+ G + +V+APG + + + Y ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
HVAG A L+ + HP+ S + +++ + +TAT + F YG G +N
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTAT---------------YLGSSFYYGKGLINV 269
Query: 629 NSAL 632
+A
Sbjct: 270 EAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T G G +P L A KV N + + + I
Sbjct: 59 DGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL---NSSGSGSYSGI 106
Query: 283 IAGFDVAIHDGVDIISASLG-SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
++G + A +G+D+I+ SLG + + +V +A G++VVA+AGNSG + T
Sbjct: 107 VSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGSTN 162
Query: 342 DNVPP----WVLTVGASTTDRE---FSSY 363
P V+ VGA ++ FSS
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNSNRASFSSV 191
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 1e-21
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHV 570
+++R P + V APG I + ++ S +M+GTSMA PHV
Sbjct: 422 WTSRDPCID--GGQGVTVCAPGGAIAS--VPQFTMSK---------SQLMNGTSMAAPHV 468
Query: 571 AGIAGLV----KTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHV 626
AG L+ K + ++SP +IK AI TAT PFA G G +
Sbjct: 469 AGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY-------------VDPFAQGHGLL 515
Query: 627 NPNSALDPGLVYDLGPGDYLAY 648
N A + + + L +
Sbjct: 516 NVEKAFEHLTEHRQSKDNMLRF 537
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 3e-19
Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 20/170 (11%)
Query: 217 NLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANL 276
L + HGTH S A G+ G +P A++ + + ++
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIG-DGRLGSM 311
Query: 277 CNAADIIAGFDVAI-----HDGVDIISASLGSKPKEHFESSVAVGSFHAMM-HGILVVAS 330
++ + +D+I+ S G + + +G++ VAS
Sbjct: 312 ETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVAS 371
Query: 331 AGNSGPAEKTVDNVP----PWVLTVGASTTDREFSSYVTLGNKMVIKGAS 376
AGN GPA TV P P ++ VGA + + + + K+ +
Sbjct: 372 AGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVYT 421
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS G D++APGV++ + + Y ++GTSMA P
Sbjct: 181 ASFSQYGA--------GLDIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
HVAG A LVK +P WS I++ + TAT+ + YG+G VN
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATS---------------LGSTNLYGSGLVNA 264
Query: 629 NSAL 632
+A
Sbjct: 265 EAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T G G +P A L A KV + + + I
Sbjct: 58 DGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL---GASGSGSVSSI 105
Query: 283 IAGFDVAIHDGVDIISASLG-SKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV 341
G + A ++G+ + + SLG P E +V A G+LVVA++GNSG
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI-- 159
Query: 342 DNVP---PWVLTVGASTTDRE---FSSY 363
+ P + VGA+ + FS Y
Sbjct: 160 -SYPARYANAMAVGATDQNNNRASFSQY 186
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 40/199 (20%)
Query: 437 QRAAQAGAVGMILA--NSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMT 494
+ + ++ A N D P AY + VA++
Sbjct: 168 RMGRNNDRL-IVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR----VAALA 222
Query: 495 NSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRR 554
+ S G N +D + APG +I +
Sbjct: 223 QYRKGETPVLHGGGITGSRFGNNWVD-------IAAPGQNITFLRPDA------------ 263
Query: 555 VPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQ 614
SGTS A V+G+ + + +P + +K ++ +A S
Sbjct: 264 -KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV---------- 312
Query: 615 KATPFAYGAGHVNPNSALD 633
+N A+
Sbjct: 313 ---DKVTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 31/164 (18%), Positives = 47/164 (28%), Gaps = 29/164 (17%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
HGT S YG G P A +++ +V + A +
Sbjct: 85 ALYIHGTAMASLIAS-----------RYGIY-GVYPHALISSRRVIPDGVQDSWIRAIES 132
Query: 283 IAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG------- 335
I II+ S G K + S + L+VA+ GN G
Sbjct: 133 IMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLS 192
Query: 336 ----------PAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNK 369
+V+ V+ V A R+ + V G
Sbjct: 193 AQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGG 236
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 8e-21
Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 33/249 (13%)
Query: 127 DNQIP-PDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAI 185
D +IP N+ + I +D F + + W ++ + I
Sbjct: 32 DERIPGLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYW-----HEPAEPI 86
Query: 186 TCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSL 245
T +GL + ++P+ I N H H ST G + +
Sbjct: 87 TPEDYAAFQSIRDQGLKGKEKEEALEAVIPDT-KDRIVLNDHACHVTSTIVGQ--EHSPV 143
Query: 246 YGMGYGTAKGGSPKARLAAYKVCWKPNGAN--LCNAADIIAGFDVAIHDGVDIISASLGS 303
+G+ +P R+ G + + ++ D+A+ G +II +
Sbjct: 144 FGI--------APNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCR 195
Query: 304 KPKEHFESSV---AVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTD 357
+ + A+ + +L+V+ GN+ +P P L VGA+ D
Sbjct: 196 PTQTSEGEEILVQAIKK--CQDNNVLIVSPTGNNSNES---WCLPAVLPGTLAVGAAKVD 250
Query: 358 RE---FSSY 363
FS++
Sbjct: 251 GTPCHFSNW 259
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSHEEFDPRRVPYNVMSGTSMAC 567
FS G N K ++APG +I+ A E ++GTSMA
Sbjct: 254 CHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE-------------PVRLTGTSMAA 295
Query: 568 PHVAGIAGLVKTLH----PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
P + GI+ L+ +L A+++A++ TA P +V + P
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI-------PCDPEVVEE---PERCLR 345
Query: 624 GHVNPNSALD 633
G VN A+
Sbjct: 346 GFVNIPGAMK 355
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 96.7 bits (240), Expect = 8e-21
Identities = 47/258 (18%), Positives = 75/258 (29%), Gaps = 33/258 (12%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVP-----YNVMSGT 563
+ FS+R + V APGV I++ E +E + Y+ GT
Sbjct: 329 AGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGT 380
Query: 564 SMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
SMA PHV G+ ++ P+ P I+ + TA G
Sbjct: 381 SMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFD------------FNGNGWDHDTGY 428
Query: 624 GHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLF------TQPKEPFKCPGPFSI 677
G V ++AL L G ++ + N + +F K
Sbjct: 429 GLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIA 488
Query: 678 ADFNYPSIAVPNLVNGSMTVSRRLKNV--GTPTCTYKAQITEIVGVSAVVEPITLNFTKY 735
+ S V G R L + Y + A ++
Sbjct: 489 RFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDAT 548
Query: 736 GEELTFKITFSVKGNDKP 753
+ F T VK +
Sbjct: 549 QLNVNFNSTLQVKFSTNL 566
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 2e-13
Identities = 34/153 (22%), Positives = 50/153 (32%), Gaps = 26/153 (16%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKV---CWKPNGANLCNA 279
GTH T G G G +P A++ + G
Sbjct: 196 YGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNGYVGD 246
Query: 280 ADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK 339
+ AG A G +++ S G + A +AM HG+++V SAGN+
Sbjct: 247 DYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE-AFD--YAMEHGVVMVVSAGNNTS--D 301
Query: 340 TVDNVP---PWVLTVGASTTDRE------FSSY 363
+ P P V+ V A FSS
Sbjct: 302 SHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 7e-19
Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 30/135 (22%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVP---------YNV 559
S FS G N D + APG E + Y
Sbjct: 350 SEFSNFGMNYTD-------IAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIY 402
Query: 560 MSGTSMACPHVAGIAGLVKT-LHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATP 618
+GT++A P V+G L+ H + P + T++++
Sbjct: 403 QAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR----------- 451
Query: 619 FAYGAGHVNPNSALD 633
YG G ++ AL+
Sbjct: 452 --YGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 3e-16
Identities = 37/274 (13%), Positives = 67/274 (24%), Gaps = 98/274 (35%)
Query: 132 PDSAWNKARFGEDVIIGNLDSGV-----------WPESQSFTDEGMGPIPDRWQGTCQND 180
++++ + I +D+GV +S++ + + +D
Sbjct: 135 NGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHD 194
Query: 181 TNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFV 240
N D GHGT
Sbjct: 195 VN----------------------------------------DRKGHGTMVSGQTSA--N 212
Query: 241 SNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISAS 300
+ G +P + Y+V G+ + A +DG +I+ S
Sbjct: 213 GKL----------IGVAPNNKFTMYRVF----GSKKTELLWVSKAIVQAANDGNQVINIS 258
Query: 301 LGSKPKEHFESSVAVGSFH-------------AMMHGILVVASAGNSGPAEKTVDNVP-- 345
+GS A +VVA+AGN G +
Sbjct: 259 VGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQ 318
Query: 346 ----------------PWVLTVGASTTDREFSSY 363
V+TVG++ S +
Sbjct: 319 REYQGNGEVKDVPASMDNVVTVGSTDQKSNLSEF 352
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 7e-19
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS+RGP +KPDV+APG I++A ++ S Y M GTSMA P
Sbjct: 203 AQFSSRGPTKDG--RIKPDVMAPGTFILSARSSLAPDSSFW-ANHDSKYAYMGGTSMATP 259
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
VAG ++ K +++ A ++ G G G V
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAAD-------IGLGYPNGNQGWGRVTL 312
Query: 629 NSALDPGLVYDLGPGD 644
+ +L+ V +
Sbjct: 313 DKSLNVAYVNESSSLS 328
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 5e-16
Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 55/240 (22%)
Query: 133 DSAWNKARF-GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKL 191
D A + G+ I+ D+G+ + + K
Sbjct: 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSS-------------MHEAFRGKIT------ 51
Query: 192 IGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYG 251
+ + D NGHGTH + G+ G
Sbjct: 52 -------------------ALYALGRTNNANDTNGHGTHVAGSVLGN-------GSTNKG 85
Query: 252 TAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFES 311
A P+A L + G +++ F A G I + S G+ + +
Sbjct: 86 MA----PQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTT 140
Query: 312 SVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTDREFSSYVTLGN 368
+ + + ++ +AGN GP T+ + P +TVGA+ R
Sbjct: 141 DSRNVDDYVRKNDMTILFAAGNEGPNGGTI-SAPGTAKNAITVGATENLRPSFGSYADNI 199
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 38/130 (29%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
S F+ + D++APGV I + + + Y +SGT+MA P
Sbjct: 216 SDFTNTNE--------EIDIVAPGVGIKSTYLDSG-------------YAELSGTAMAAP 254
Query: 569 HVAGIAGLVKTLHPD-----WSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623
HVAG L+ L D S I + ++ AT G A G
Sbjct: 255 HVAGALALIINLAEDAFKRSLSETEIYAQLVRRATP------------IGFTAQAEGNGF 302
Query: 624 GHVNPNSALD 633
++ +
Sbjct: 303 LTLDLVERIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 51/283 (18%), Positives = 89/283 (31%), Gaps = 77/283 (27%)
Query: 96 IARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVW 155
+ + + + + + G+E + + W + G IIG +D+G
Sbjct: 1 MRKFRLIPYK-QVDKVSALSEVPM---GVE---IVEAPAVWRASAKGAGQIIGVIDTGCQ 53
Query: 156 PESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVP 215
+ + R + G+ ++
Sbjct: 54 VDHPDLAE-------------------------RIIGGVNLTTDYGG------------- 75
Query: 216 ENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGAN 275
+ T D+NGHGTH T + G G G +PKA L K +G
Sbjct: 76 -DETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKAL---SGDG 122
Query: 276 LCNAADIIAGFDVAI------HDGVDIISASLGSKPK-EHFESSVAVGSFHAMMHGILVV 328
I A+ + + II+ SLG E +V +A+ + + VV
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVV 178
Query: 329 ASAGNSGPAEKTVDNVP-----PWVLTVGASTTDRE---FSSY 363
+AGN G + + V+ VGA D F++
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNT 221
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 37/125 (29%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
S FS G + DV APG I + + Y +SGTSMA P
Sbjct: 191 SSFSTYGSWV--------DVAAPGSSIYSTYPTST-------------YASLSGTSMATP 229
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
HVAG+AGL+ S + I++AI TA T + G VN
Sbjct: 230 HVAGVAGLLA--SQGRSASNIRAAIENTADKIS--------------GTGTYWAKGRVNA 273
Query: 629 NSALD 633
A+
Sbjct: 274 YKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 23/153 (15%)
Query: 217 NLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANL 276
N +T + NGHGTH A G A G +PKA + A +V + +
Sbjct: 61 NDSTPQNGNGHGTHCAGIAAAV-------TNNSTGIA-GTAPKASILAVRVL---DNSGS 109
Query: 277 CNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGP 336
+ G A G +IS SLG AV +A G +VVA+AGN+G
Sbjct: 110 GTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ-AVN--YAWNKGSVVVAAAGNAGN 166
Query: 337 AEKTVDNVP---PWVLTVGASTTDRE---FSSY 363
N P + V ++ + FS+Y
Sbjct: 167 TAP---NYPAYYSNAIAVASTDQNDNKSSFSTY 196
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 37/125 (29%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS G + DV+APGVDI++ T Y MSGTSMA P
Sbjct: 192 ASFSNYGTWV--------DVVAPGVDIVSTITGNR-------------YAYMSGTSMASP 230
Query: 569 HVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNP 628
HVAG+A L+ + I+ AI TA T + G +N
Sbjct: 231 HVAGLAALLA--SQGRNNIEIRQAIEQTADKIS--------------GTGTYFKYGRINS 274
Query: 629 NSALD 633
+A+
Sbjct: 275 YNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 50/243 (20%), Positives = 77/243 (31%), Gaps = 68/243 (27%)
Query: 128 NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITC 187
D AW+ + I +D+GV + +
Sbjct: 16 QNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK-------------------- 55
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
G ++ N +D N HGTH A +N
Sbjct: 56 -----GYDFVD------------------NDYDPMDLNNHGTHVAGIAAAE-TNN----- 86
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLG-SKPK 306
G A G +P R+ A + + +DI A G ++I+ SLG
Sbjct: 87 -ATGIA-GMAPNTRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHT 141
Query: 307 EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTDRE---F 360
E++V +A G +VVA+AGN+G + P V+ VGA F
Sbjct: 142 TTLENAVN----YAWNKGSVVVAAAGNNGSST---TFEPASYENVIAVGAVDQYDRLASF 194
Query: 361 SSY 363
S+Y
Sbjct: 195 SNY 197
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 37/149 (24%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHE 548
A + + +T SR S FS G + D+ APG I +A+ +
Sbjct: 168 ARVPSGVTVGSTTSSDSR--SSFSNWGSCV--------DLFAPGSQIKSAWYDG------ 211
Query: 549 EFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608
Y +SGTSMA PHVAG+A L + +P + + + A+
Sbjct: 212 -------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASE--------- 255
Query: 609 DQVTGQKATP--FAY-GAGHVNPNSALDP 634
++V+ + T Y A P
Sbjct: 256 NKVSDTRGTTNKLLYSLADSGCEPDCGGP 284
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 36/158 (22%)
Query: 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA 274
+N S D NGHGTH T GGS YG AK + +V + +
Sbjct: 58 VDNDADSSDCNGHGTHVAGTIGGS----------QYGVAK----NVNIVGVRVL---SCS 100
Query: 275 NLCNAADIIAGFD--VAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ +I+G D G + + SLG +S+V A+ G+ + +AG
Sbjct: 101 GSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAG 156
Query: 333 NSG-------PAEKTVDNVPPWVLTVGASTTDREFSSY 363
NS PA P +TVG++T+ SS+
Sbjct: 157 NSNADACNTSPARV------PSGVTVGSTTSSDSRSSF 188
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHE 548
A ++IT SR S FS G L D+ APG I +++
Sbjct: 170 ARAADAITVGSTTSNDSR--SSFSNYGTCL--------DIYAPGSSITSSWYTSNSA--- 216
Query: 549 EFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
N +SGTSMA PHVAG+A L +P+ SPA + + + T AT
Sbjct: 217 --------TNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 36/158 (22%)
Query: 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA 274
+N + D NGHGTH T GGS YG AK + +V N +
Sbjct: 60 IDNDYDATDCNGHGTHVAGTIGGS----------TYGVAK----NVNVVGVRVL---NCS 102
Query: 275 NLCNAADIIAGFD--VAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ + +IAG + G + + SLG + + +V A+ GI V +AG
Sbjct: 103 GSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAG 158
Query: 333 NSG-------PAEKTVDNVPPWVLTVGASTTDREFSSY 363
N PA +TVG++T++ SS+
Sbjct: 159 NDNSNACNYSPARA------ADAITVGSTTSNDSRSSF 190
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 48/138 (34%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS R P +V APGVDI++ + ++ Y + GT+MA P
Sbjct: 214 ASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMATP 250
Query: 569 HVAGIAGLVKTLH-------------PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQK 615
HV+G+ L++ + D S ++ + TA G
Sbjct: 251 HVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD------------LGPT 298
Query: 616 ATPFAYGAGHVNPNSALD 633
YG G V A+
Sbjct: 299 GWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 46/168 (27%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH + T G G +P ++ + +V + + +DI
Sbjct: 71 DQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVL---DARGSGSYSDI 118
Query: 283 IAGFDVAIHD--------------------GVDIISASLGSKPK-EHFESSVAVGSFHAM 321
G + AI ++IS SLG + + A
Sbjct: 119 AIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAY 174
Query: 322 MHGILVVASAGNSGPAEKTVDNVP---PWVLTVGASTTDRE---FSSY 363
GI++VA++GN G + P P V+ VGA ++ FS+
Sbjct: 175 NAGIVIVAASGNEGAPS---PSYPAAYPEVIAVGAIDSNDNIASFSNR 219
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 59/334 (17%), Positives = 99/334 (29%), Gaps = 94/334 (28%)
Query: 66 VEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLE 125
V G I + + + I + ++ + P V V + L SW G
Sbjct: 19 VLGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGST 77
Query: 126 KDNQIPP--------DSAWNKARF-GEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGT 176
+ Q P S W+ + + LD+GV +
Sbjct: 78 QPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA------------- 124
Query: 177 CQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAG 236
+ + + L D NGHGTH + T
Sbjct: 125 ------------NIAWCVSTLRGKVST-------------KLRDCADQNGHGTHVIGTIA 159
Query: 237 GSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD---- 292
G G +P ++ + +V G+ + +DI G + AI
Sbjct: 160 AL--------NNDIGVV-GVAPGVQIYSVRVL-DARGS--GSYSDIAIGIEQAILGPDGV 207
Query: 293 ----------------GVDIISASLGSKPK-EHFESSVAVGSFHAMMHGILVVASAGNSG 335
++IS SLG + + A GI++VA++GN G
Sbjct: 208 ADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEG 263
Query: 336 PAEKTVDNVP---PWVLTVGASTTDRE---FSSY 363
+ P P V+ VGA ++ FS+
Sbjct: 264 APS---PSYPAAYPEVIAVGAIDSNDNIASFSNR 294
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 5e-15
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 48/138 (34%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS R P +V APGVDI++ + ++ Y + GT+MA P
Sbjct: 289 ASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMATP 325
Query: 569 HVAGIAGLVKTLH-------------PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQK 615
HV+G+ L++ + D S ++ + TA G
Sbjct: 326 HVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD------------LGPT 373
Query: 616 ATPFAYGAGHVNPNSALD 633
YG G V A+
Sbjct: 374 GWDADYGYGVVRAALAVQ 391
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAF-TNEYGPSH 547
A + ++T +R + FS G + D+ APG I +A+ T++
Sbjct: 168 ARVAEALTVGATTSSDAR--ASFSNYGSCV--------DLFAPGASIPSAWYTSDTA--- 214
Query: 548 EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
++GTSMA PHVAG+A L +P +PA++ SAI+ ATT
Sbjct: 215 ---------TQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T GG YG AK L A +V + + + +
Sbjct: 66 DCNGHGTHVAGTIGGV----------TYGVAK----AVNLYAVRVL---DCNGSGSTSGV 108
Query: 283 IAGFDVAIHDGVD--IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG----- 335
IAG D + + + SLG +++V +++ G++ +AGN
Sbjct: 109 IAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDNANACN 164
Query: 336 --PAEKTVDNVPPWVLTVGASTTDREFSSY 363
PA LTVGA+T+ +S+
Sbjct: 165 YSPARV------AEALTVGATTSSDARASF 188
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 1e-15
Identities = 48/336 (14%), Positives = 93/336 (27%), Gaps = 83/336 (24%)
Query: 47 DINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVF 106
+ + ++ + + I H + + GF + + + + P V +
Sbjct: 85 ETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI- 143
Query: 107 LEEGIDLHTTR-SWEFLGLEK-DNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDE 164
EE + W LE+ + G V + LD+ + + + E
Sbjct: 144 -EEDSSVFAQSIPW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--E 197
Query: 165 GMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDH 224
G R ++ + +S
Sbjct: 198 G-----------------------RVMVTDFENVPEEDGTRFHRQAS-----------KC 223
Query: 225 NGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIA 284
+ HGTH G G AK A + + +V N + +
Sbjct: 224 DSHGTHLAGVVSGR----------DAGVAK----GASMRSLRVL---NCQGKGTVSGTLI 266
Query: 285 GFDVAIHDGVD------IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG--- 335
G + + ++ L ++ G+++V +AGN
Sbjct: 267 GLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFRDDA 322
Query: 336 ----PAEKTVDNVPPWVLTVGASTTDREFSSYVTLG 367
PA P V+TVGA+ + + TLG
Sbjct: 323 CLYSPASA------PEVITVGATNAQDQPVTLGTLG 352
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APG DII A ++ + + SGTS A HVAGIA ++ + P+ +
Sbjct: 360 DLFAPGEDIIGASSD--CST---------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 587 AAIKSAIMTTATT 599
A ++ ++ +
Sbjct: 409 AELRQRLIHFSAK 421
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 1e-15
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSP 586
D+ APG DII A ++ + + SGTS A HVAGIA ++ + P+ +
Sbjct: 208 DLFAPGEDIIGASSD--CST---------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 587 AAIKSAIMTTATT 599
A ++ ++ +
Sbjct: 257 AELRQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 40/162 (24%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
+ + HGTH G G AK A + + +V N
Sbjct: 66 RQASKCDSHGTHLAGVVSGR----------DAGVAK----GASMRSLRVL---NCQGKGT 108
Query: 279 AADIIAGFDVAIHD------GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAG 332
+ + G + G ++ L ++ G+++V +AG
Sbjct: 109 VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAG 164
Query: 333 NSG-------PAEKTVDNVPPWVLTVGASTTDREFSSYVTLG 367
N PA P V+TVGA+ + + TLG
Sbjct: 165 NFRDDACLYSPASA------PEVITVGATNAQDQPVTLGTLG 200
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 51/259 (19%)
Query: 123 GLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVW--PESQSFTDEGMGPIPDRWQGTCQND 180
+ D W+ G++V++ +D+G+ + + G I + D
Sbjct: 12 HYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQIS---LD 68
Query: 181 TNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFV 240
+ P+ D + HG+H T
Sbjct: 69 GDGRDADPFDEGDWFDNWACGGR-----------PDPRKERSDSSWHGSHVAGTIAAV-T 116
Query: 241 SNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI---------- 290
+N G A G + A++ + G +DI G A
Sbjct: 117 NN------RIGVA-GVAYGAKVVPVRAL----GRCGGYDSDISDGLYWAAGGRIAGIPEN 165
Query: 291 HDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVP----- 345
+ +I+ SLGS + + + + G LVV +AGN +
Sbjct: 166 RNPAKVINMSLGSDGQCSYNAQTMIDRATR--LGALVVVAAGNEN-----QNASNTWPTS 218
Query: 346 -PWVLTVGASTTDREFSSY 363
VL+VGA+T+ +S+
Sbjct: 219 CNNVLSVGATTSRGIRASF 237
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 31/129 (24%)
Query: 509 SFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACP 568
+ FS G ++ D+ APG DI++ + P Y+ M+GTSMA P
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATP 280
Query: 569 HVAGIAGLVK----TLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAG 624
HV+G+A LV +++ + +PA +K +++T + + A G+G
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR-------------LDRALGSG 327
Query: 625 HVNPNSALD 633
V+ +A++
Sbjct: 328 IVDAEAAVN 336
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 26/111 (23%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHE 548
AS T + R S FS G + D+ APG I + +
Sbjct: 173 ASEPTVCTVGATDSNDVR--STFSNYGRVV--------DIFAPGTSITSTWIGG------ 216
Query: 549 EFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
N +SGTSMA PH+AG+A + L S A+ I T +T
Sbjct: 217 -------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 41/155 (26%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D +GHGTH T G +G AK K + KV + + + ++I
Sbjct: 66 DGHGHGTHCAGTIGSK----------TWGVAK----KVSIFGVKVL---DDSGSGSLSNI 108
Query: 283 IAGFDVAIHDGVD-------IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG 335
IAG D D + S SLG + A G+ V +AGN
Sbjct: 109 IAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAGNDN 164
Query: 336 -------PAEKTVDNVPPWVLTVGASTTDREFSSY 363
PA + P V TVGA+ ++ S++
Sbjct: 165 RDAANTSPASE------PTVCTVGATDSNDVRSTF 193
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 26/111 (23%)
Query: 491 ASMTNSIT--EFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHE 548
AS + T ++ R S FS G L D+ PG DI++ +
Sbjct: 172 ASEPSVCTVGASDRYDRR--SSFSNYGSVL--------DIFGPGTDILSTWIGG------ 215
Query: 549 EFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599
+SGTSMA PHVAG+A + TL + A+ I TA
Sbjct: 216 -------STRSISGTSMATPHVAGLAAYLMTLGKT-TAASACRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 41/155 (26%)
Query: 223 DHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADI 282
D NGHGTH T G YG AK K +L KV + + I
Sbjct: 65 DGNGHGTHCAGTVGSR----------TYGVAK----KTQLFGVKVL---DDNGSGQYSTI 107
Query: 283 IAGFDVAIHDGVD-------IISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSG 335
IAG D D + + S SLG S+ A G++V +AGN+
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAGNNN 163
Query: 336 -------PAEKTVDNVPPWVLTVGASTTDREFSSY 363
PA + P V TVGAS SS+
Sbjct: 164 ADARNYSPASE------PSVCTVGASDRYDRRSSF 192
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 21/119 (17%), Positives = 41/119 (34%)
Query: 551 DPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQ 610
D N GTS A P AG+ L+ +P+ + ++ + +A + +
Sbjct: 259 DINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD 318
Query: 611 VTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPF 669
K YG G ++ + ++ ++ YL L +QS +
Sbjct: 319 SAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESVI 377
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 33/170 (19%)
Query: 219 TTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCN 278
+ + HGT + G+ G A+++ ++ +
Sbjct: 92 KPRLSDDYHGTRCAGEIAA--KKGNNFCGV------GVGYNAKISGIRIL-----SGDIT 138
Query: 279 AADIIAGFDVAIHDGVDIISASLGSK---------PKEHFESSVAVGSFHAMMHGILVVA 329
D A + D DI S S G ++ V + G + V
Sbjct: 139 TEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVF 197
Query: 330 SAGNSGPAEKTVDNVP-------PWVLTVGASTTDREFSSYVTLGNKMVI 372
++GN G DN + +T+GA Y + ++
Sbjct: 198 ASGNGG---TRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMA 244
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 557 YNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKA 616
+GTS + P AGI L + + + ++ ++ T+ + G+K
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313
Query: 617 TPFAYGAGHVNPNSALD 633
+ +YG G ++ + +
Sbjct: 314 SH-SYGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 38/260 (14%), Positives = 71/260 (27%), Gaps = 70/260 (26%)
Query: 134 SAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIG 193
AW + G +++ LD G+ P D +
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---DPGASFDVNDQDPD----------- 74
Query: 194 IRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTA 253
P+ T ++ N HGT +N G
Sbjct: 75 ---------------------PQPRYTQMNDNRHGTRCAGEVAAV-ANN------GVCGV 106
Query: 254 KGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH-DGVDIISASLGSK-------- 304
G + AR+ ++ D + + ++ + + I SAS G +
Sbjct: 107 -GVAYNARIGGVRML-------DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDG 158
Query: 305 PKEHFESSVAVGSFHAM-MHGILVVASAGNSGPAEKTVDNVP-------PWVLTVGASTT 356
P E + G G + V ++GN G D+ + L++ ++T
Sbjct: 159 PARLAEEAFFRGVSQGRGGLGSIFVWASGNGGR---EHDSCNCDGYTNSIYTLSISSATQ 215
Query: 357 DREFSSYVTLGNKMVIKGAS 376
Y + + S
Sbjct: 216 FGNVPWYSEACSSTLATTYS 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 94/599 (15%), Positives = 174/599 (29%), Gaps = 172/599 (28%)
Query: 14 FILSLLQTPAFTAKKPYVVYLGSHS--HGSNPTSHDINRARIKHHEFLGSFLGSVEEAAG 71
F++S ++T +Y+ + N N +R++ + L L + A
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 72 LIFHSYGRYINGFG-AVLEEEHAKQIARHPEVVSVFLEEGIDLHTTRSWEFLGLEKDNQI 130
++ G G + A + +V + I W L L+ N
Sbjct: 153 VLIDGVL----GSGKTWV----ALDVCLSYKVQCKM-DFKI------FW--LNLKNCNSP 195
Query: 131 PPDSAWNKARFGEDVI--IGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCN 188
E V+ + L + P S +D I R + +
Sbjct: 196 ------------ETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLR-----IHSIQAEL--- 234
Query: 189 RKLIGIRYISEGLI--------ESCRAMN--SSFLVPENLTTSIDHNGHGTHTLSTAGGS 238
R+L+ + L+ ++ A N L+ TT T LS +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTR---FKQVTDFLS---AA 284
Query: 239 FVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK---PNGANLCN--AADIIAGFDVAIHDG 293
+++SL K+ L Y C P N IIA I DG
Sbjct: 285 TTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDG 340
Query: 294 VD---------------IISASLGS-KPKEHFESSVAVGSFHAMMHGILVVASAGNSGPA 337
+ II +SL +P E+ + F + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFDRL--SVF----------- 381
Query: 338 EKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKG---------SLTQDFY 388
+ ++P +L++ + V NK+ S+ EK S+ +
Sbjct: 382 PPSA-HIPTILLSLIWFDVIKSDVMVVV--NKLHKY--SLVEKQPKESTISIPSIYLELK 436
Query: 389 PLIAGEAA---KVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAV 445
+ E A + + N T + I P + + +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPP-YLDQYFY-SH-----------------I 477
Query: 446 GMILANSREDQNISLNMVHFLPTAYVNYK--------DGQSVYA--YIYNTENPVASMTN 495
G L N + ++L +++++ D + A I NT +
Sbjct: 478 GHHLKNIEHPERMTL-----FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 496 SITEFNKIWSRMTS----FFSARGPNLIDPAILKPDVIAPGVDII-AAFTNEYGPSHEE 549
I + + + R+ + F NLI + D++ A E EE
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLI---------CSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 72/489 (14%), Positives = 134/489 (27%), Gaps = 158/489 (32%)
Query: 339 KTVDNVPPWVLTVGASTTDREFSSYVTLGNK----------MVIKGASIAEK--GSLTQD 386
K V ++P +L+ E + + ++ K + +K + +
Sbjct: 36 KDVQDMPKSILS------KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 387 FYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD-------AKIGDA-KGQR 438
Y + K T+ D ++ Y+ K+ A R
Sbjct: 90 NYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 439 AAQAGAV-GM------ILANS--REDQNISLNM---VHFLPTAYVNYKDG-----QSVYA 481
A+ + G+ +A + M + +L N + Q +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 482 YI-YNTENPVASMTNSITEFNKIWSRMTSFFSARG-PN-LIDPAILKPDVIAPGVDIIAA 538
I N + +N + I + + ++ N L+ +L +V A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLL-NVQNA--KAWNA 261
Query: 539 FTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598
F + C K L T
Sbjct: 262 F-----------NLS-------------C----------KIL----------------LT 271
Query: 599 TEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSI 658
T + D ++ T + + + L P V L L YL +
Sbjct: 272 TRFKQ---VTDFLSAATTTHISL----DHHSMTLTPDEVKSL----LLKYL-----DCRP 315
Query: 659 IDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPTCTYKAQITEI 718
DL P+E P + SI ++ +G T K+V ++T I
Sbjct: 316 QDL---PREVLTT-NPRRL------SIIAESIRDGLAT-WDNWKHVNCD------KLTTI 358
Query: 719 VGVS-AVVEPITLNFTKYGEELT-F----KITFSVKGNDKPVATDYVFGELVWSDGFHNV 772
+ S V+EP + K + L+ F I + L+W D +
Sbjct: 359 IESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL-------------SLIWFDVIKSD 403
Query: 773 KSTIAVKLQ 781
+ KL
Sbjct: 404 VMVVVNKLH 412
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.99 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.94 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.8 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.63 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.62 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.51 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.46 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.31 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.0 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.38 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.93 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 94.39 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 91.53 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 91.44 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 89.07 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 86.98 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 83.77 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 83.66 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 82.58 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-119 Score=1044.35 Aligned_cols=630 Identities=36% Similarity=0.614 Sum_probs=566.9
Q ss_pred ccCCccccCcccCCCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCC-CCccccCceeee
Q 047013 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDT-NKAITCNRKLIG 193 (781)
Q Consensus 115 ~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~-~~~~~~n~ki~g 193 (781)
++++|+|+|+... ..+|..+.+|+||+|||||||||++||+|.+.++++++.+|+|.|+.+. |+...||+|+++
T Consensus 1 Tt~s~~flgl~~~-----~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNPS-----SGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCSS-----SSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCCc-----hhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 4789999999854 5799999999999999999999999999999999999999999999988 888899999999
Q ss_pred eEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCC
Q 047013 194 IRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNG 273 (781)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~ 273 (781)
.++|.++++... .+. +.+..++.|.+||||||||||||+.+++.+++|++.+.+.||||+|+|+++|+++..+
T Consensus 76 ~~~f~~~~~~~~--~~~----~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g- 148 (649)
T 3i6s_A 76 ANYFNKGILAND--PTV----NITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG- 148 (649)
T ss_dssp EEECCHHHHHHC--TTC----CCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE-
T ss_pred eEeccCcccccc--ccc----ccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC-
Confidence 999998876543 111 1234578899999999999999999999999999889999999999999999999875
Q ss_pred CCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecc
Q 047013 274 ANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353 (781)
Q Consensus 274 ~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA 353 (781)
+..+++++||+||+++|+||||||||.....+..+++.+++++|+++||+||+||||+|+...++.+.+||+|+|||
T Consensus 149 ---~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgA 225 (649)
T 3i6s_A 149 ---TFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225 (649)
T ss_dssp ---ECHHHHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEE
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEee
Confidence 89999999999999999999999999886677889999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCc--eeEEEEEecCC-
Q 047013 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKV--KGKILICYDAK- 430 (781)
Q Consensus 354 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~- 430 (781)
++.||.|+..+.++++.++.|.+++..... ...+|++|.. ....|.+..++..++ +|||+||.||.
T Consensus 226 st~dr~f~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~ 294 (649)
T 3i6s_A 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNGD 294 (649)
T ss_dssp EECSCEEEEEEEETTSCEEEEECCCSSCBC-EEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCSC
T ss_pred eecccceeeEEEeCCCcEEeeeecccCccc-CcceeeEecc----------cccccccccccccccccCCcEEEEeCCCc
Confidence 999999999999999999999999876543 5678999755 456899988888877 99999999999
Q ss_pred cchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcccc
Q 047013 431 IGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF 510 (781)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (781)
.+.+|..+++++|+.|+|++|+. .....+.+.+|+++|+.++++.|++|++++.+++++|.+..++.+....+.+++
T Consensus 295 ~~~~k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~ 371 (649)
T 3i6s_A 295 FSDQMRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAA 371 (649)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECT
T ss_pred cHHHHHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccc
Confidence 99999999999999999999987 344556789999999999999999999999999999999999988888999999
Q ss_pred ccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCC-CcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 047013 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDP-RRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAI 589 (781)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~i 589 (781)
||||||+...+++|||||+|||++|+++|+..........+. ....|..+||||||||||||++|||||+||+|+|++|
T Consensus 372 FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~I 451 (649)
T 3i6s_A 372 SSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAI 451 (649)
T ss_dssp TSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred cCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHH
Confidence 999999997789999999999999999998864433222222 3358999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccCCCcccceecccCCCCCC
Q 047013 590 KSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPF 669 (781)
Q Consensus 590 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 669 (781)
|++||+||+++++.+.|+.+.....+++++.||+|+||+.+|++||||||...+||+.|||++||+..+|++|++ +++
T Consensus 452 ksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~--~~~ 529 (649)
T 3i6s_A 452 RSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR--SSA 529 (649)
T ss_dssp HHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT--TTS
T ss_pred HHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec--CCC
Confidence 999999999999999999885567788999999999999999999999999999999999999999999999999 677
Q ss_pred C--CCCCCCCCCCCCCeEEEec-CCCCc-----EEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEE
Q 047013 670 K--CPGPFSIADFNYPSIAVPN-LVNGS-----MTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTF 741 (781)
Q Consensus 670 ~--~~~~~~~~~ln~ps~~~~~-~~~~~-----~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~ 741 (781)
. |+. ...+||||||++.. +. .. ++|+|||||||....+|++++++|.|++|+|+|.+|+|++.+|+++|
T Consensus 530 ~~~C~~--~~~~lNyPs~~~~~~~~-~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f 606 (649)
T 3i6s_A 530 SHNCSN--PSADLNYPSFIALYSIE-GNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSY 606 (649)
T ss_dssp CC-CCC--CCCCCCCSSEEEEECCS-SCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEE
T ss_pred cCCCCC--chhhcCCCcEEeecccC-CCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEE
Confidence 7 986 56799999999987 45 45 89999999999989999999999999999999999999889999999
Q ss_pred EEEEEeecCCCCCCCceEEEEEEEEc--CcceEEEEEEEEeC
Q 047013 742 KITFSVKGNDKPVATDYVFGELVWSD--GFHNVKSTIAVKLQ 781 (781)
Q Consensus 742 ~vt~~~~~~~~~~~~~~~~G~i~~~~--~~~~v~~P~~~~~~ 781 (781)
+|||+. .....+.|.||+|+|++ +.|.||+|++|+++
T Consensus 607 ~v~~~~---~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 607 TLTIRY---IGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEE---CCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEe---cccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 999998 34556678999999999 89999999999874
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-109 Score=964.86 Aligned_cols=614 Identities=40% Similarity=0.716 Sum_probs=518.0
Q ss_pred ccCCccccCcccCCCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeee
Q 047013 115 TTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGI 194 (781)
Q Consensus 115 ~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~ 194 (781)
++++|+|+|++ ..+|.+..+|+||+|||||||||++||+|+++++++++.+|+|.|+.+. .+.||+|++|+
T Consensus 1 tt~s~~flGl~-------~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~--~~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN--NFRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCC-------TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSS--SCCCCSSEEEE
T ss_pred CCCChhHcCCC-------ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCC--CcccCcceeee
Confidence 57899999997 4688899999999999999999999999999999999999999999877 56799999999
Q ss_pred EeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCC
Q 047013 195 RYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGA 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~ 274 (781)
++|..++... +.+..+++|++||||||||||||+...+.+.+|+..+.++||||+|+|++||+|++.+
T Consensus 72 ~~~~~~~~~~----------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-- 139 (621)
T 3vta_A 72 RSYHIGRPIS----------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG-- 139 (621)
T ss_dssp EECCCSSSCC----------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE--
T ss_pred eecccCCccC----------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC--
Confidence 9998764332 2335578899999999999999999888888888888999999999999999999876
Q ss_pred CCCChHHHHHHHHHhhhcCCcEEEecCCCCC-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecc
Q 047013 275 NLCNAADIIAGFDVAIHDGVDIISASLGSKP-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGA 353 (781)
Q Consensus 275 ~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA 353 (781)
|..+++++||++|+++|+||||||||+.. ..+..+++++++++|+++||++|+||||+|+...++++.+||+++|++
T Consensus 140 --~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~a 217 (621)
T 3vta_A 140 --CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217 (621)
T ss_dssp --ECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEE
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEE
Confidence 88999999999999999999999999873 345678899999999999999999999999999999999999999999
Q ss_pred cCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcch
Q 047013 354 STTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGD 433 (781)
Q Consensus 354 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 433 (781)
++.++.+...+.++++..+.+.++.... ...+++++..+.............|.+..+++.+++|||++|.++. .
T Consensus 218 st~d~~~~~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~--~ 292 (621)
T 3vta_A 218 STMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF--G 292 (621)
T ss_dssp ECCSEEEEEEEEETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC--C
T ss_pred eeccccceeeEEeccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecCC--C
Confidence 9999999999999999999998876543 4667888777766655556677889999999999999999998864 4
Q ss_pred HHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccC
Q 047013 434 AKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSA 513 (781)
Q Consensus 434 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 513 (781)
.+..+...+|+.++|++++... ..+.+.+|...++..++..++.++.......+.+....+.. ....+.++.|||
T Consensus 293 ~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FSS 367 (621)
T 3vta_A 293 PHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSS 367 (621)
T ss_dssp HHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTSC
T ss_pred hhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeecC
Confidence 5667778899999999987643 23467899999999999999999999988888876655443 456789999999
Q ss_pred CCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 047013 514 RGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593 (781)
Q Consensus 514 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L 593 (781)
|||+...++++||||+|||++|+|+++....... ......|..+||||||||||||++|||||+||+|+|++||++|
T Consensus 368 rGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaL 444 (621)
T 3vta_A 368 RGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSAL 444 (621)
T ss_dssp CCSCTTCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCCCCCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHH
Confidence 9999877899999999999999999986543221 2334589999999999999999999999999999999999999
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccCCCcccceecccCCCCCCCCCC
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQSIIDLFTQPKEPFKCPG 673 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 673 (781)
|+||++++..+. ++.+++||+|+||+.+|++|+||||+..+||+.|||++||+.++++.+++ ....|+.
T Consensus 445 mtTA~~~~~~~~---------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~--~~~~~~~ 513 (621)
T 3vta_A 445 MTTASPMNARFN---------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG--DYSACTS 513 (621)
T ss_dssp HHTCBCCCTTTC---------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------
T ss_pred HhcCCcccccCC---------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec--cccccCC
Confidence 999998865543 44568999999999999999999999999999999999999999999998 7888876
Q ss_pred CC--CCCCCCCCeEEEecCC--CCcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeec
Q 047013 674 PF--SIADFNYPSIAVPNLV--NGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKG 749 (781)
Q Consensus 674 ~~--~~~~ln~ps~~~~~~~--~~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~ 749 (781)
.. ...+||||||++.... ..+++|+|||||+|....+|++++++|.|++|+|+|.+|+|++.||+++|+|||+.
T Consensus 514 ~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~-- 591 (621)
T 3vta_A 514 GNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-- 591 (621)
T ss_dssp ----CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE--
T ss_pred CCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe--
Confidence 54 5679999999986322 27899999999999999999999999999999999999999888999999999987
Q ss_pred CCCCCCCceEEEEEEEEcCcceEEEEEEEEe
Q 047013 750 NDKPVATDYVFGELVWSDGFHNVKSTIAVKL 780 (781)
Q Consensus 750 ~~~~~~~~~~~G~i~~~~~~~~v~~P~~~~~ 780 (781)
..++.|+||+|+|+++.|.||+|++|+.
T Consensus 592 ---~~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 592 ---SIKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp ---CCCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred ---cCCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 3678899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-81 Score=757.18 Aligned_cols=540 Identities=21% Similarity=0.247 Sum_probs=425.1
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCC----------C-CCccccCceeeeeEeccchh
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQND----------T-NKAITCNRKLIGIRYISEGL 201 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~----------~-~~~~~~n~ki~g~~~~~~~~ 201 (781)
..+|..+++|+||+|||||||||++||+|.+. ..|++.|... . ..+.+||+|++++++|.++.
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 47999999999999999999999999999853 4566655432 1 23458999999999986531
Q ss_pred hhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHH
Q 047013 202 IESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAAD 281 (781)
Q Consensus 202 ~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~ 281 (781)
...|..||||||||||||+...+.+. .+.+.||||+|+|+++|+|++.+. .+..++
T Consensus 81 ------------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~~ 136 (926)
T 1xf1_A 81 ------------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL--ADYARN 136 (926)
T ss_dssp ------------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH--HHHHHH
T ss_pred ------------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC--CCcHHH
Confidence 12288999999999999987554321 246799999999999999987641 245678
Q ss_pred HHHHHHHhhhcCCcEEEecCCCCC--CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-------------CCccC--C
Q 047013 282 IIAGFDVAIHDGVDIISASLGSKP--KEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-------------KTVDN--V 344 (781)
Q Consensus 282 i~~ai~~a~~~g~dVIN~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~~~~~--~ 344 (781)
+++||+||+++|+||||||||... ...+.+++..+++.|.++||+||+||||+|+.. .++.+ .
T Consensus 137 i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~ 216 (926)
T 1xf1_A 137 YAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 216 (926)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTT
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCccc
Confidence 999999999999999999999873 234566788899999999999999999999632 22333 4
Q ss_pred CCceEEecccCCceeeeeeEEe-CCceEEeeeeeec-cCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeE
Q 047013 345 PPWVLTVGASTTDREFSSYVTL-GNKMVIKGASIAE-KGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGK 422 (781)
Q Consensus 345 ~p~vitVgA~~~d~~~~~~~~~-~~~~~~~g~~~~~-~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 422 (781)
+||+|+|||++.++.+...+.+ +++....+.++.. ..+.....+|+++..+ .|.+..+ .+++||
T Consensus 217 ~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gk 282 (926)
T 1xf1_A 217 ADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGK 282 (926)
T ss_dssp TCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTS
T ss_pred CCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCe
Confidence 7999999999999999888887 5554444555433 2233467789987542 4766666 689999
Q ss_pred EEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccc-ccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeee
Q 047013 423 ILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNIS-LNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEF 500 (781)
Q Consensus 423 ivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 500 (781)
|+||+||. .+.+|..+++.+|+.|+|++|+....... .....++|+.+|+.++++.|.. .+..++++.......
T Consensus 283 ivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~ 358 (926)
T 1xf1_A 283 IALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVL 358 (926)
T ss_dssp EEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEE
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceec
Confidence 99999999 99999999999999999999987543322 2335689999999999988763 556666665555445
Q ss_pred ccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH-
Q 047013 501 NKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT- 579 (781)
Q Consensus 501 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q- 579 (781)
.....+.++.||||||+. ++++||||+|||++|+++++++ .|..+||||||||||||++|||+|
T Consensus 359 ~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~ 423 (926)
T 1xf1_A 359 PTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQ 423 (926)
T ss_dssp ECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHH
T ss_pred ccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHH
Confidence 556678999999999997 9999999999999999999764 899999999999999999999965
Q ss_pred ---hCCCCCHHH----HHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccC
Q 047013 580 ---LHPDWSPAA----IKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGL 652 (781)
Q Consensus 580 ---~~p~lt~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~ 652 (781)
.||+|+|+| ||++||+||++++..+ ....+++++||+|+||+.+|+++.+ |||..
T Consensus 424 ~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~-------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~ 485 (926)
T 1xf1_A 424 YETQYPDMTPSERLDLAKKVLMSSATALYDED-------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDK 485 (926)
T ss_dssp HHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG-------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEES
T ss_pred HhccCCCCCHHHHHHHHHHHHHhcCCCcccCC-------CCccCChhccCCCccCHHHhcCCCe-----------EEEcC
Confidence 599999997 9999999999874321 1234678899999999999999854 57877
Q ss_pred CCcccceecccCCCCCCCCCCCCCCCCCCCCeEEEecCCCCcEEEEEEEEecCCCC--eeEEEEEec--CCceEEEEeec
Q 047013 653 GYNQSIIDLFTQPKEPFKCPGPFSIADFNYPSIAVPNLVNGSMTVSRRLKNVGTPT--CTYKAQITE--IVGVSAVVEPI 728 (781)
Q Consensus 653 g~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~tv~n~~~~~--~~y~~~~~~--~~~~~v~~~p~ 728 (781)
+++.. +|.++++. ...+++|||+|+|+.+ .+|++.+.. +.+..++++|.
T Consensus 486 ~~~~~--------------------------~i~l~~~~-~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~ 538 (926)
T 1xf1_A 486 DNTSS--------------------------KVHLNNVS-DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPK 538 (926)
T ss_dssp SSSCS--------------------------CEEEEEEC-SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCcc--------------------------eeeccccC-ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccc
Confidence 65332 45556555 6889999999999854 567777764 66888888887
Q ss_pred EEEEc-------CCCcEEEEEEEEEeecC-----CCCCCCceEEEEEEEE--cCcc-eEEEEEEEEe
Q 047013 729 TLNFT-------KYGEELTFKITFSVKGN-----DKPVATDYVFGELVWS--DGFH-NVKSTIAVKL 780 (781)
Q Consensus 729 ~~~~~-------~~g~~~~~~vt~~~~~~-----~~~~~~~~~~G~i~~~--~~~~-~v~~P~~~~~ 780 (781)
.|.+. ++||+++|+|||++... +.++++.|+||+|+|+ ++.| .||+||++..
T Consensus 539 ~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 539 VLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred eeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 65544 45999999999997310 1245677999999999 4555 5999999863
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=546.28 Aligned_cols=369 Identities=32% Similarity=0.451 Sum_probs=290.3
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHH--------
Q 047013 25 TAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQI-------- 96 (781)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L-------- 96 (781)
.++.+|||.||+.... +...++++.+ ..++.++|. .|+||+++++++++++|
T Consensus 33 ~~~~~~iV~~~~~~~~------------~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~ 92 (539)
T 3afg_A 33 DQEVSTIIMFDNQADK------------EKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGY 92 (539)
T ss_dssp TCEEEEEEEESSHHHH------------HHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC-
T ss_pred cCceEEEEEECCCCCH------------HHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccc
Confidence 3445799999985431 2222333332 257889997 79999999999999999
Q ss_pred ---hcCCCeEEEEEcceecccccCCccccCcccC-CCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCC
Q 047013 97 ---ARHPEVVSVFLEEGIDLHTTRSWEFLGLEKD-NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDR 172 (781)
Q Consensus 97 ---~~~~~V~~V~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~ 172 (781)
+++|+|++|+++..+++.... .++... .+.....+|..+++|+||+|||||||||++||+|.++
T Consensus 93 ~~~~~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~-------- 160 (539)
T 3afg_A 93 FGNAQLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK-------- 160 (539)
T ss_dssp --CCCCTTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT--------
T ss_pred cccccCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC--------
Confidence 899999999999998875321 111110 0111257899999999999999999999999999743
Q ss_pred CcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCcc
Q 047013 173 WQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGT 252 (781)
Q Consensus 173 ~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~ 252 (781)
+++.++|.++ ...+.|++||||||||||||+.... .+.
T Consensus 161 ------------------i~~~~d~~~~-----------------~~~~~D~~gHGThVAgiiag~~~~~-------~g~ 198 (539)
T 3afg_A 161 ------------------VIGWVDFVNG-----------------KTTPYDDNGHGTHVASIAAGTGAAS-------NGK 198 (539)
T ss_dssp ------------------EEEEEETTTC-----------------CSSCCBSSSHHHHHHHHHHCCCGGG-------TTT
T ss_pred ------------------EeeeEECCCC-----------------CCCCCCCCCCHHHHHHHHhCcCccC-------CCC
Confidence 5666666543 1246788999999999999985321 234
Q ss_pred ccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc----CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEE
Q 047013 253 AKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD----GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVV 328 (781)
Q Consensus 253 ~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV 328 (781)
+.||||+|+|+.+|++++.+ .++.+++++||+||+++ |++|||||||........+.+..++.++.++|++||
T Consensus 199 ~~GvAp~A~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV 275 (539)
T 3afg_A 199 YKGMAPGAKLVGIKVLNGQG---SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVV 275 (539)
T ss_dssp TCCSCTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEE
Confidence 68999999999999998776 47889999999999975 899999999987544566788999999999999999
Q ss_pred EecCCCCCCCCC--ccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCcccc
Q 047013 329 ASAGNSGPAEKT--VDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDA 406 (781)
Q Consensus 329 ~AAGN~g~~~~~--~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 406 (781)
+||||+|+...+ .++..+++|+|||++.
T Consensus 276 ~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~-------------------------------------------------- 305 (539)
T 3afg_A 276 VAAGNSGPNKYTVGSPAAASKVITVGAVDK-------------------------------------------------- 305 (539)
T ss_dssp EECCSCCSSSSCCCTTTTCSSSEEEEEECT--------------------------------------------------
T ss_pred EECCCCCCCCCcccCCccCCceEEEeeecC--------------------------------------------------
Confidence 999999976544 3456799999998432
Q ss_pred CCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcC
Q 047013 407 TQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNT 486 (781)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 486 (781)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccch
Q 047013 487 ENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMA 566 (781)
Q Consensus 487 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 566 (781)
.+.+++||||||+. ++++||||+|||++|++++....... ......|..++|||||
T Consensus 306 ------------------~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmA 361 (539)
T 3afg_A 306 ------------------YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMA 361 (539)
T ss_dssp ------------------TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHH
T ss_pred ------------------CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHH
Confidence 14789999999998 89999999999999999986532110 1112269999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCC
Q 047013 567 CPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPG 635 (781)
Q Consensus 567 aP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 635 (781)
||||||++|||+|++|+|++++||++|++||++++..+ .+++.||+|+||+.+|++..
T Consensus 362 aP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 99999999999999999999999999999998764221 24578999999999999953
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=509.45 Aligned_cols=345 Identities=25% Similarity=0.354 Sum_probs=276.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEEEE
Q 047013 27 KKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVF 106 (781)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~V~ 106 (781)
+.+|||.||+.... .++++. ...++.++|. .+++|+++++++++++|+++|+|++|+
T Consensus 2 ~~~~iV~~~~~~~~---------------~~~~~~-------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~ 58 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN---------------PHEVLG-------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVE 58 (395)
T ss_dssp EEEEEEEECTTTCC---------------HHHHHH-------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEE
T ss_pred cEEEEEEECCCccH---------------HHHHHH-------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEE
Confidence 46899999997432 112222 2357889998 699999999999999999999999999
Q ss_pred EcceecccccCCc-----------cccCcccCCCCCCccccccCCCCCc--eEEEEecCCCCcCCCCccCCCCCCCCCCC
Q 047013 107 LEEGIDLHTTRSW-----------EFLGLEKDNQIPPDSAWNKARFGED--VIIGNLDSGVWPESQSFTDEGMGPIPDRW 173 (781)
Q Consensus 107 ~~~~~~~~~~~s~-----------~~~g~~~~~~~~~~~~w~~~~~G~g--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~ 173 (781)
++..++++....+ ..|++... ....+|..+ +|+| |+|||||||||++||+|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i---~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------- 125 (395)
T 2z2z_A 59 FDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV---KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------- 125 (395)
T ss_dssp ECCEEEECCEECC------CCSCCCCHHHHHT---TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------
T ss_pred EeeeecccCCCCcccccccCccccCCcchhhc---CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------
Confidence 9999876532221 12233222 125789988 9999 99999999999999999753
Q ss_pred cccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccc
Q 047013 174 QGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTA 253 (781)
Q Consensus 174 ~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~ 253 (781)
+...++|..+... . +..+..|+.||||||||||+|.. + ...+
T Consensus 126 -----------------~~~~~~~~~~~~~------~------~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~ 167 (395)
T 2z2z_A 126 -----------------IAWCVSTLRGKVS------T------KLRDCADQNGHGTHVIGTIAALN-N--------DIGV 167 (395)
T ss_dssp -----------------EEEEEECGGGCCB------C------CHHHHBCSSSHHHHHHHHHHCCC-S--------SSSC
T ss_pred -----------------cccCccccCCccc------C------CCCCCCCCCCCHHHHHHHHHeec-C--------CCce
Confidence 4444445432100 0 00124678999999999999973 1 1234
Q ss_pred cccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc--------------------CCcEEEecCCCCCCCCCCChH
Q 047013 254 KGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD--------------------GVDIISASLGSKPKEHFESSV 313 (781)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~ 313 (781)
.||||+|+|+.+|++++.+ .++.+++++||+||+++ +++|||||||... ....+
T Consensus 168 ~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~ 241 (395)
T 2z2z_A 168 VGVAPGVQIYSVRVLDARG---SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYL 241 (395)
T ss_dssp CCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHH
T ss_pred EEECCCCEEEEEEEecCCC---CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHH
Confidence 8999999999999998776 47789999999999987 9999999999873 23567
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEec
Q 047013 314 AVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAG 393 (781)
Q Consensus 314 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~ 393 (781)
..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 242 ~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 285 (395)
T 2z2z_A 242 YDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN------------------------------------ 285 (395)
T ss_dssp HHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------------------------------------
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC------------------------------------
Confidence 78888899999999999999998777778888999999985422
Q ss_pred ccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEeh
Q 047013 394 EAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNY 473 (781)
Q Consensus 394 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~ 473 (781)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCC
Q 047013 474 KDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPR 553 (781)
Q Consensus 474 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 553 (781)
+.+++||++|| +|+|||++|+++++.+
T Consensus 286 --------------------------------~~~a~fS~~G~----------~v~APG~~i~s~~~~~----------- 312 (395)
T 2z2z_A 286 --------------------------------DNIASFSNRQP----------EVSAPGVDILSTYPDD----------- 312 (395)
T ss_dssp --------------------------------SCBCTTSCSSC----------SEEEECSSEEEEETTT-----------
T ss_pred --------------------------------CCCCcccCCCC----------CEEeCCCCeeeecCCC-----------
Confidence 57899999997 6799999999999864
Q ss_pred cccceeeccccchhhHHHHHHHHHHHhCC-------------CCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCc
Q 047013 554 RVPYNVMSGTSMACPHVAGIAGLVKTLHP-------------DWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFA 620 (781)
Q Consensus 554 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p-------------~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 620 (781)
.|..++|||||||||||++|||+|++| .|++.+||++|++||++++..| .++.
T Consensus 313 --~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g------------~~~~ 378 (395)
T 2z2z_A 313 --SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG------------WDAD 378 (395)
T ss_dssp --EEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS------------SBTT
T ss_pred --ceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC------------CCCC
Confidence 899999999999999999999999999 9999999999999999874322 3468
Q ss_pred ccCCcccccccCCC
Q 047013 621 YGAGHVNPNSALDP 634 (781)
Q Consensus 621 ~G~G~in~~~Av~~ 634 (781)
||||+||+.+|++.
T Consensus 379 ~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 379 YGYGVVRAALAVQA 392 (395)
T ss_dssp TBTCBCCHHHHHHH
T ss_pred ccCceeCHHHHHHH
Confidence 99999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-56 Score=503.83 Aligned_cols=336 Identities=19% Similarity=0.202 Sum_probs=262.3
Q ss_pred ccEEEEeccceeeEEEEeCHHHHHHHhc-CCCeEEEEEcceecccccCCc----------cccCcccCCCCCCccccccC
Q 047013 71 GLIFHSYGRYINGFGAVLEEEHAKQIAR-HPEVVSVFLEEGIDLHTTRSW----------EFLGLEKDNQIPPDSAWNKA 139 (781)
Q Consensus 71 ~~i~~~y~~~~~g~s~~l~~~~i~~L~~-~~~V~~V~~~~~~~~~~~~s~----------~~~g~~~~~~~~~~~~w~~~ 139 (781)
.++.+.|. .|++|+++++++++++|++ +|+|++|+++..++++..... ..|++...... ..+|..+
T Consensus 66 ~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~--~~~~~~~ 142 (471)
T 3t41_A 66 LNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNN--GASYDDL 142 (471)
T ss_dssp CEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTT--TGGGGGC
T ss_pred CEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCc--HHHHhcc
Confidence 56788886 6999999999999999999 999999999988877543221 11233322211 3789999
Q ss_pred CCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCC
Q 047013 140 RFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLT 219 (781)
Q Consensus 140 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 219 (781)
.+|+||+|||||||||++||+|.++- |. +.+.|..+........+. ..+..
T Consensus 143 ~~G~gv~VaViDtGid~~Hp~~~~~~-------~~------------------~~~~~~~~~~~~~~~~~~----~~~~~ 193 (471)
T 3t41_A 143 PKHANTKIAIIDTGVMKNHDDLKNNF-------ST------------------DSKNLVPLNGFRGTEPEE----TGDVH 193 (471)
T ss_dssp CSSCCCCEEEEESCCCTTCTTTTTTB-------CT------------------TCEECCCTTCGGGCCTTC----CCCTT
T ss_pred CCCCCcEEEEEeCCCCCCChhHhcCc-------cc------------------CCcccccCCCccCCCccc----CCCCC
Confidence 99999999999999999999998641 11 111121111110000000 01123
Q ss_pred CCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEEEe
Q 047013 220 TSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISA 299 (781)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVIN~ 299 (781)
.+.|..||||||||||+|+. .+.||||+|+|+.+|++++.. +...++++||+||+++|++||||
T Consensus 194 ~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~----~~~~~i~~ai~~a~~~g~~Vin~ 257 (471)
T 3t41_A 194 DVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKK----TELLWVSKAIVQAANDGNQVINI 257 (471)
T ss_dssp CCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSC----CCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCC----CcHHHHHHHHHHHHhCCCCEEEe
Confidence 56789999999999999863 258999999999999998754 88999999999999999999999
Q ss_pred cCCCCCC-C------------CCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC------------------ccCCCCce
Q 047013 300 SLGSKPK-E------------HFESSVAVGSFHAMMHGILVVASAGNSGPAEKT------------------VDNVPPWV 348 (781)
Q Consensus 300 SlG~~~~-~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~v 348 (781)
|||.... . ...+.+..++..+.++|++||+||||+|..... .++..+++
T Consensus 258 S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~v 337 (471)
T 3t41_A 258 SVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNV 337 (471)
T ss_dssp CCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTE
T ss_pred CCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCe
Confidence 9997410 0 122457788888999999999999999976542 45677899
Q ss_pred EEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEec
Q 047013 349 LTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYD 428 (781)
Q Consensus 349 itVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (781)
|+|||++.+
T Consensus 338 itVgA~~~~----------------------------------------------------------------------- 346 (471)
T 3t41_A 338 VTVGSTDQK----------------------------------------------------------------------- 346 (471)
T ss_dssp EEEEEECTT-----------------------------------------------------------------------
T ss_pred EEEEeeCCC-----------------------------------------------------------------------
Confidence 999985422
Q ss_pred CCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcc
Q 047013 429 AKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMT 508 (781)
Q Consensus 429 g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 508 (781)
+.+
T Consensus 347 -----------------------------------------------------------------------------~~~ 349 (471)
T 3t41_A 347 -----------------------------------------------------------------------------SNL 349 (471)
T ss_dssp -----------------------------------------------------------------------------SSB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 578
Q ss_pred ccccCCCCCCCCCCCccCeeeeCCCc----------------------EEeeecCCCCCCCCCCCCCcccceeeccccch
Q 047013 509 SFFSARGPNLIDPAILKPDVIAPGVD----------------------IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMA 566 (781)
Q Consensus 509 a~fSs~Gp~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 566 (781)
++||++||+. |||+|||++ |+++++.+ .|..++|||||
T Consensus 350 a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGTS~A 409 (471)
T 3t41_A 350 SEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG-------------RYIYQAGTALA 409 (471)
T ss_dssp CTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-------------SEEEECSHHHH
T ss_pred CCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC-------------CEEeecchHHH
Confidence 9999999963 499999987 88888764 89999999999
Q ss_pred hhHHHHHHHHHHHhCC-CCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCC
Q 047013 567 CPHVAGIAGLVKTLHP-DWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPG 635 (781)
Q Consensus 567 aP~VAG~aALl~q~~p-~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 635 (781)
||||||++|||+|++| .++|++||++|++||++... .+...||||+||+.+|++.+
T Consensus 410 aP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 410 TPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------CCHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------CCcCccccChhCHHHHHHHH
Confidence 9999999999999999 89999999999999987532 34578999999999999954
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-58 Score=526.74 Aligned_cols=339 Identities=19% Similarity=0.243 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEEEEEc
Q 047013 29 PYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLE 108 (781)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~V~~~ 108 (781)
+|||+||+.... ...+.+.+++...... .....++.+.|.+.|+||+++++++++++|+++|+|++|+++
T Consensus 77 ~YIV~lk~~~~~---------~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd 146 (692)
T 2p4e_P 77 TYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 146 (692)
T ss_dssp EEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred cEEEEECCCCCH---------HHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEec
Confidence 899999998763 2333344444433211 112457899999999999999999999999999999999999
Q ss_pred ceecccccCCccccCcccCCCCCCccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccC
Q 047013 109 EGIDLHTTRSWEFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCN 188 (781)
Q Consensus 109 ~~~~~~~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n 188 (781)
..+..+ ..+|.+..+..... . ...|..+.+|+||+|||||||||++||+|.++.. |.
T Consensus 147 ~~v~~~-~~pWgL~~i~~~~~-~-~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------------- 203 (692)
T 2p4e_P 147 SSVFAQ-SIPWNLERITPPRY-R-ADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------------- 203 (692)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred cccccC-CCCcchhhcccccc-c-ccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec--------------
Confidence 988652 23444333221110 1 2478888999999999999999999999986410 00
Q ss_pred ceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccc
Q 047013 189 RKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVC 268 (781)
Q Consensus 189 ~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~ 268 (781)
+...+.+. ++. .....+.|.+||||||||||+|+. .||||+|+|+.+|++
T Consensus 204 ----~~~~~~d~----dg~--------~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl 253 (692)
T 2p4e_P 204 ----DFENVPEE----DGT--------RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVL 253 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----ccccccCC----CCC--------cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEee
Confidence 00000000 000 001245788999999999999874 699999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHhhhc------CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc-
Q 047013 269 WKPNGANLCNAADIIAGFDVAIHD------GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV- 341 (781)
Q Consensus 269 ~~~~~~~~~~~~~i~~ai~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~- 341 (781)
++.+ .++.+++++||+|++++ +++|||||||+.. ...+..++..+.++||+||+||||+|.....+
T Consensus 254 ~~~G---~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~s 326 (692)
T 2p4e_P 254 NCQG---KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYS 326 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCC---CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccC
Confidence 8876 47788999999999986 8999999999763 34566777888999999999999999765443
Q ss_pred cCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCcee
Q 047013 342 DNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKG 421 (781)
Q Consensus 342 ~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 421 (781)
++..+++|+|||++.+...
T Consensus 327 PA~~~~vItVGA~d~~~~~------------------------------------------------------------- 345 (692)
T 2p4e_P 327 PASAPEVITVGATNAQDQP------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEEEEcCCCCc-------------------------------------------------------------
Confidence 5577999999996543100
Q ss_pred EEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeec
Q 047013 422 KILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFN 501 (781)
Q Consensus 422 kivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 501 (781)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC
Q 047013 502 KIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581 (781)
Q Consensus 502 ~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (781)
...-+.||+|||.+ ||+|||++|+++++... ..|..++|||||||||||++|||+|++
T Consensus 346 ---a~~ss~fSn~G~~v--------DI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~ 403 (692)
T 2p4e_P 346 ---VTLGTLGTNFGRCV--------DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAE 403 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cccccccCCCCCce--------eEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHC
Confidence 00112389999854 99999999999997632 279999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccccC
Q 047013 582 PDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 582 p~lt~~~ik~~L~~TA~~~ 600 (781)
|+|+|++||++|++||.+.
T Consensus 404 P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 404 PELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp -------------------
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 9999999999999999764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=496.19 Aligned_cols=379 Identities=22% Similarity=0.235 Sum_probs=273.8
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCH----HHHHHHh--c
Q 047013 25 TAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEE----EHAKQIA--R 98 (781)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~----~~i~~L~--~ 98 (781)
..+.+|||.||+... ..++++.. +.++.+++. .+++++++++. +.+++|+ +
T Consensus 29 ~~~~~~IV~~k~~~~---------------~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~ 85 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALA 85 (671)
T ss_dssp BCTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSC
T ss_pred cCCccEEEEECCCcC---------------HHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhcc
Confidence 456899999998421 11222221 246777776 78999999865 3356776 4
Q ss_pred CCCeEEEEEcceeccccc---C------------------------CccccCcccCCCCCCccc-cccCCCCCceEEEEe
Q 047013 99 HPEVVSVFLEEGIDLHTT---R------------------------SWEFLGLEKDNQIPPDSA-WNKARFGEDVIIGNL 150 (781)
Q Consensus 99 ~~~V~~V~~~~~~~~~~~---~------------------------s~~~~g~~~~~~~~~~~~-w~~~~~G~gv~VaVI 150 (781)
+|+|++|||+..+++... . ....|++..+ ....+ |.. .+|+||+||||
T Consensus 86 ~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I---~~~~a~w~~-~tG~gV~VAVI 161 (671)
T 1r6v_A 86 LKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI---GVTQQLWEE-ASGTNIIVAVV 161 (671)
T ss_dssp CSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT---TCCHHHHHH-CSCTTCEEEEE
T ss_pred CCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhcc---CCchhhhhc-cCCCCCEEEEE
Confidence 899999999977654310 0 0011222222 11355 888 89999999999
Q ss_pred cCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCcccc
Q 047013 151 DSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTH 230 (781)
Q Consensus 151 DtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGTh 230 (781)
|||||++||+|.++ ++..+.+..+ .. .|. ..+..|.+|||||
T Consensus 162 DTGVd~~HpdL~~~--------------------------~~~g~~~~~~------~~-----~p~-~~d~~d~~gHGTh 203 (671)
T 1r6v_A 162 DTGVDGTHPDLEGQ--------------------------VIAGYRPAFD------EE-----LPA-GTDSSYGGSAGTH 203 (671)
T ss_dssp ESCCBTTSGGGTTT--------------------------BCCEEEGGGT------EE-----ECT-TCBCCTTCSHHHH
T ss_pred eCCCCCCCcccccc--------------------------EEecccccCC------Cc-----CCC-CCCCccCCCcchh
Confidence 99999999999864 1111111110 00 000 1134567899999
Q ss_pred ccccccccccccccccccCCccccccCCCceEeecccccCC---CCCCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCC
Q 047013 231 TLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKP---NGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKE 307 (781)
Q Consensus 231 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---~~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 307 (781)
|||||||..+ +..+.||||+|+|+.+|+++.. +.......+.+++||+||+++|++|||||||...
T Consensus 204 VAGiIAa~~n---------g~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-- 272 (671)
T 1r6v_A 204 VAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-- 272 (671)
T ss_dssp HHHHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC--
T ss_pred hhhhhhccCC---------CCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC--
Confidence 9999999741 1235899999999999999761 1011345677999999999999999999999862
Q ss_pred CCCChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCc
Q 047013 308 HFESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQD 386 (781)
Q Consensus 308 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (781)
+...+..++..|.++|++||+||||+|... ..+++..+++|+|||++.+.
T Consensus 273 -~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g---------------------------- 323 (671)
T 1r6v_A 273 -YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG---------------------------- 323 (671)
T ss_dssp -CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------
T ss_pred -CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC----------------------------
Confidence 345678888999999999999999999765 45666789999999954321
Q ss_pred ceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccc
Q 047013 387 FYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFL 466 (781)
Q Consensus 387 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 466 (781)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCC
Q 047013 467 PTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPS 546 (781)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 546 (781)
....+++|||+||.+ ||+|||++|+++++......
T Consensus 324 -------------------------------------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g 358 (671)
T 1r6v_A 324 -------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIG 358 (671)
T ss_dssp -------------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTT
T ss_pred -------------------------------------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccc
Confidence 002478999999987 99999999999987642211
Q ss_pred C-----CCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcc
Q 047013 547 H-----EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAY 621 (781)
Q Consensus 547 ~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 621 (781)
. .......+.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..| .+..|
T Consensus 359 ~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g------------~d~~~ 426 (671)
T 1r6v_A 359 YEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDT 426 (671)
T ss_dssp CCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTT
T ss_pred cccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC------------CCCCc
Confidence 0 001112347999999999999999999999999999999999999999999875332 24689
Q ss_pred cCCcccccccCCCCeeecCCCccc
Q 047013 622 GAGHVNPNSALDPGLVYDLGPGDY 645 (781)
Q Consensus 622 G~G~in~~~Av~~~l~~~~~~~~~ 645 (781)
|||+||+.+|++..|..+....+|
T Consensus 427 G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 427 GYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred ccceeCHHHHhhhhcCCCCCccce
Confidence 999999999999887766554454
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=486.31 Aligned_cols=381 Identities=21% Similarity=0.267 Sum_probs=272.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+ |+||+|||||||||++||+|.++ ++..+++...
T Consensus 14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~~~~~~~------------ 53 (441)
T 1y9z_A 14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT------------ 53 (441)
T ss_dssp SSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS------------
T ss_pred hhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccCcccCCC------------
Confidence 4788765 77999999999999999999753 1111111110
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCc--eEeecccccCCCCCCCCChHHHHHHHHHhh
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKA--RLAAYKVCWKPNGANLCNAADIIAGFDVAI 290 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~ 290 (781)
.+...+.|..||||||||||+|..+. ..+.||||+| +|+.+|+++..+ .+..+++++||+||+
T Consensus 54 ---~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g---~~~~~~~~~ai~~a~ 118 (441)
T 1y9z_A 54 ---GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG---WGYSSSLVAAIDTCV 118 (441)
T ss_dssp ---CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE---ECCSSCHHHHHHHHH
T ss_pred ---CCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHH
Confidence 01224568899999999999998521 2358999995 999999998765 477889999999999
Q ss_pred hc-CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCC-
Q 047013 291 HD-GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGN- 368 (781)
Q Consensus 291 ~~-g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~- 368 (781)
++ |++|||||||... ....+..++.++.++|++||+||||+|.....+++..+++|+|||++.+.....+...+.
T Consensus 119 ~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~ 195 (441)
T 1y9z_A 119 NSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ 195 (441)
T ss_dssp HTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTT
T ss_pred HhcCCcEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCc
Confidence 99 9999999999873 234567788899999999999999999887778888899999999987754322211111
Q ss_pred ------------------ce----EEeeeeeeccCCC-CCccee--eEecccccccccCccccCCCCCC--CCCCCCcee
Q 047013 369 ------------------KM----VIKGASIAEKGSL-TQDFYP--LIAGEAAKVANVSNEDATQCKNG--TIDPEKVKG 421 (781)
Q Consensus 369 ------------------~~----~~~g~~~~~~~~~-~~~~~~--lv~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~g 421 (781)
+. .+.|.+++..... ....++ +.|..+..... .......|... .++..+++|
T Consensus 196 vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~-~~~~~~~C~~~~~~~~~~~~~g 274 (441)
T 1y9z_A 196 VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS-ATGALAECTVNGTSFSCGNMAN 274 (441)
T ss_dssp EEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCE-EEEEEEEEEEETTEEECCCCTT
T ss_pred eEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccc-cccchhccccccccccCCCccc
Confidence 11 1222222211000 000000 11111110000 01123457643 567889999
Q ss_pred EEEEEecCC------cchHHHHHHHhcCceEEEEecCCCCccc------cccccccccEEEEehhhHHHHHHHHhcCCCc
Q 047013 422 KILICYDAK------IGDAKGQRAAQAGAVGMILANSREDQNI------SLNMVHFLPTAYVNYKDGQSVYAYIYNTENP 489 (781)
Q Consensus 422 kivl~~~g~------~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 489 (781)
||+||+|+. .+.+|..+++++|+.++|++|+...... .......+|.+.++.++|+.|++++.+.
T Consensus 275 kivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~--- 351 (441)
T 1y9z_A 275 KICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS--- 351 (441)
T ss_dssp EEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE---
T ss_pred cEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC---
Confidence 999999974 5678999999999999999998642111 1123457999999999999998765321
Q ss_pred EEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhH
Q 047013 490 VASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPH 569 (781)
Q Consensus 490 ~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 569 (781)
+ .+ ++... ..|..+|||||||||
T Consensus 352 -~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmAaP~ 374 (441)
T 1y9z_A 352 -T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMATPH 374 (441)
T ss_dssp -E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHHHHH
T ss_pred -c-----------------------------------cc--------ccccC-------------CCceeecccccCCcc
Confidence 1 11 11111 289999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCCeeecCCCccccccc
Q 047013 570 VAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYL 649 (781)
Q Consensus 570 VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~ 649 (781)
|||++|||+|+||+|+|++||++||+||++++..+ ++.+||+|+||+.+|++ |+.||
T Consensus 375 VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~~-----------~~~~l 431 (441)
T 1y9z_A 375 VSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAKA-----------YLDES 431 (441)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHHH-----------HHHHC
T ss_pred cchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHHH-----------HHHhh
Confidence 99999999999999999999999999999875443 24679999999999965 99999
Q ss_pred ccCCCc
Q 047013 650 CGLGYN 655 (781)
Q Consensus 650 ~~~g~~ 655 (781)
|++++.
T Consensus 432 c~~~~~ 437 (441)
T 1y9z_A 432 CTGPTD 437 (441)
T ss_dssp TTCC--
T ss_pred hcCCCC
Confidence 999864
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-52 Score=435.89 Aligned_cols=256 Identities=32% Similarity=0.465 Sum_probs=218.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~----------------------------~~~~~~~~~~------------ 52 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLN----------------------------IRGGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCC----------------------------EEEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhc----------------------------ccCCcccCCC------------
Confidence 4789999999999999999999 8999994 2233344322
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
.....|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .++.+++++||+|++++
T Consensus 53 -----~~~~~d~~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 115 (269)
T 1gci_A 53 -----EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIAQGLEWAGNN 115 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeECCCC---CcCHHHHHHHHHHHHHC
Confidence 11356889999999999999731 12348999999999999998766 47888999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
+++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 116 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 177 (269)
T 1gci_A 116 GMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------- 177 (269)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCeEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC---------------
Confidence 9999999999873 2356788888999999999999999998777777888999999985322
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++||.+ ||+|||
T Consensus 178 -----------------------------------------------------~~~~~~S~~G~~~--------di~APG 196 (269)
T 1gci_A 178 -----------------------------------------------------NNRASFSQYGAGL--------DIVAPG 196 (269)
T ss_dssp -----------------------------------------------------SCBCTTCCCSTTE--------EEEEEC
T ss_pred -----------------------------------------------------CCCCCCCCCCCCc--------ceEecC
Confidence 4778999999976 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
++|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||++++
T Consensus 197 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------- 252 (269)
T 1gci_A 197 VNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------- 252 (269)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----------
T ss_pred CCeEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-----------
Confidence 9999998764 8999999999999999999999999999999999999999998763
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
+++.||+|+||+.+|++
T Consensus 253 ----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 ----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ----CHHHHTTCBCCHHHHTC
T ss_pred ----CCCCcccCccCHHHHcC
Confidence 24689999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=466.69 Aligned_cols=308 Identities=22% Similarity=0.254 Sum_probs=201.8
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhh--ccCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESC--RAMNS 210 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~--~~~~~ 210 (781)
.++|.++..|++|+|||||||||++||+|++....+....|+..++.........+..+.... ..++.... ....
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~- 97 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG--LKGKEKEEALEAVI- 97 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHT--CCSHHHHHHHHHHC-
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcc--cccccccccccccc-
Confidence 489999999999999999999999999999877777777787765533200000000000000 00000000 0000
Q ss_pred CCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCC--CCCCChHHHHHHHHH
Q 047013 211 SFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNG--ANLCNAADIIAGFDV 288 (781)
Q Consensus 211 ~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~~~~i~~ai~~ 288 (781)
| +...+.|.+||||||||||||+.. +.+.||||+|+|+.+|++..... ...+...++++||+|
T Consensus 98 ----~-~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~ 162 (357)
T 4h6x_A 98 ----P-DTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDL 162 (357)
T ss_dssp ----T-TTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHH
T ss_pred ----C-CCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHH
Confidence 0 122456788999999999999742 23589999999999999754321 112455678999999
Q ss_pred hhhcCCcEEEecCCCCC-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeC
Q 047013 289 AIHDGVDIISASLGSKP-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLG 367 (781)
Q Consensus 289 a~~~g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~ 367 (781)
|++.|++|||||||... .....+.+..++.++.++|++||+||||+|.....+++..+++|+|||++.+
T Consensus 163 a~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------- 232 (357)
T 4h6x_A 163 ALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD---------- 232 (357)
T ss_dssp HHHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT----------
T ss_pred HHHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC----------
Confidence 99999999999999863 3345667888899999999999999999998877777888999999985432
Q ss_pred CceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEE
Q 047013 368 NKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGM 447 (781)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~ 447 (781)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCe
Q 047013 448 ILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPD 527 (781)
Q Consensus 448 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 527 (781)
+.++.|||||+.. .|||
T Consensus 233 ----------------------------------------------------------~~~~~fSn~G~~~-----~~~d 249 (357)
T 4h6x_A 233 ----------------------------------------------------------GTPCHFSNWGGNN-----TKEG 249 (357)
T ss_dssp ----------------------------------------------------------SSBCTTCC---CT-----TTTE
T ss_pred ----------------------------------------------------------CcccccccCCCCC-----Cccc
Confidence 5789999999653 5899
Q ss_pred eeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCC
Q 047013 528 VIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL----HPDWSPAAIKSAIMTTATTEDSS 603 (781)
Q Consensus 528 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lt~~~ik~~L~~TA~~~~~~ 603 (781)
|+|||++|+++++.+. .|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..
T Consensus 250 i~APG~~i~s~~~~~~------------~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~ 317 (357)
T 4h6x_A 250 ILAPGEEILGAQPCTE------------EPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE 317 (357)
T ss_dssp EEEECSSEEECCTTCS------------CCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------
T ss_pred eeecCCCeEeccCCCC------------cccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC
Confidence 9999999999987642 6778999999999999999999964 66899999999999999987432
Q ss_pred CCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 604 KHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 604 g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
+ ...+.+||+|+||+.+|++
T Consensus 318 ~----------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 V----------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp -----------------CTTCBCCHHHHHH
T ss_pred C----------CCCcccceeEEecHHHHHH
Confidence 1 2345689999999999998
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=438.42 Aligned_cols=257 Identities=30% Similarity=0.454 Sum_probs=216.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||||++||+|+ +...+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~----------------------------~~~g~~~~~~------------ 53 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLN----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCC----------------------------EEEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHc----------------------------CCCCccccCC------------
Confidence 478999999999999999999999999994 2233344322
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
.....|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .++.+++++||+|++++
T Consensus 54 -----~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~i~~ai~~a~~~ 116 (274)
T 1r0r_E 54 -----EAYNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSG---SGSYSGIVSGIEWATTN 116 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHc
Confidence 11346789999999999999731 12358999999999999998766 47788999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC----CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE----KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|||||||... ....+..++.++.++|+++|+||||+|... ..++...+++|+|||++.
T Consensus 117 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------------ 181 (274)
T 1r0r_E 117 GMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS------------ 181 (274)
T ss_dssp TCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT------------
T ss_pred CCCEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC------------
Confidence 9999999999873 245678888899999999999999999753 334556789999998432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
.+.++.||++||.+ ||
T Consensus 182 --------------------------------------------------------~~~~~~~S~~G~~~--------di 197 (274)
T 1r0r_E 182 --------------------------------------------------------NSNRASFSSVGAEL--------EV 197 (274)
T ss_dssp --------------------------------------------------------TSCBCTTCCCSTTE--------EE
T ss_pred --------------------------------------------------------CCCcCccCCCCCCc--------eE
Confidence 24778999999865 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~ 608 (781)
+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 198 ~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------- 257 (274)
T 1r0r_E 198 MAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------- 257 (274)
T ss_dssp EEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-------
T ss_pred EeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-------
Confidence 99999999998764 8999999999999999999999999999999999999999998763
Q ss_pred ccCCCCCCCCCcccCCcccccccCC
Q 047013 609 DQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 609 ~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
++..||+|+||+.+|++
T Consensus 258 --------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 --------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --------CHHHHTTCBCCHHHHTC
T ss_pred --------CCCCcccCccCHHHHhC
Confidence 24689999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=435.71 Aligned_cols=259 Identities=29% Similarity=0.372 Sum_probs=213.1
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+..|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T 1dbi_A 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhhcCCCCCCEEEEEeCCcCCCChhhccC--------------------------cccceeccCC------------
Confidence 47999988888999999999999999999753 4444555432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..||||||||||+|...++ ..+.||||+|+|+.+|+++..+ .++.+++++||+||+++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 126 (280)
T 1dbi_A 63 -----DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNG---SGTLSDIADAIIYAADS 126 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 1245688999999999999986432 2248999999999999998766 47889999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|++|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 127 g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 188 (280)
T 1dbi_A 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--------------- 188 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---------------
T ss_pred CCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC---------------
Confidence 9999999999873 3456788888999999999999999998766777788999999985422
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++||.+ ||+|||
T Consensus 189 -----------------------------------------------------~~~~~~S~~G~~~--------dv~ApG 207 (280)
T 1dbi_A 189 -----------------------------------------------------DRLASFSNYGTWV--------DVVAPG 207 (280)
T ss_dssp -----------------------------------------------------SCBCTTBCCSTTC--------CEEEEC
T ss_pred -----------------------------------------------------CCcCCCCCCCCCc--------eEEEec
Confidence 4788999999876 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
++|+++++.+ .|..++|||||||||||++|||++ |.+++.+||++|++||+++...
T Consensus 208 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~--------- 263 (280)
T 1dbi_A 208 VDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT--------- 263 (280)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------
T ss_pred CCeEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------
Confidence 9999998764 899999999999999999999987 8999999999999999987421
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
...||+|+||+.+|++
T Consensus 264 -----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 -----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----TTTBSSEECCHHHHHT
T ss_pred -----CCcccCCEECHHHHhc
Confidence 2579999999999986
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=433.69 Aligned_cols=259 Identities=32% Similarity=0.450 Sum_probs=217.5
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~------------ 53 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----------------------------AGGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECCTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----------------------------cCCccccCC------------
Confidence 4789999999999999999999999999952 222333321
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
+..+..|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..++++++|+|++++
T Consensus 54 ----~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 117 (281)
T 1to2_E 54 ----ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADG---SGQYSWIINGIEWAIAN 117 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeCCCC---CccHHHHHHHHHHHHHC
Confidence 011236789999999999999731 12358999999999999998766 46788999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC----CCccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE----KTVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|||||||... ....+..++.++.++|++||+||||+|... ..++...|++|+|||++.
T Consensus 118 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------------ 182 (281)
T 1to2_E 118 NMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS------------ 182 (281)
T ss_dssp TCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT------------
T ss_pred CCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC------------
Confidence 9999999999873 245678888899999999999999999753 344556789999998432
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
.+.++.||++||.+ ||
T Consensus 183 --------------------------------------------------------~~~~~~fS~~G~~~--------di 198 (281)
T 1to2_E 183 --------------------------------------------------------SNQRASFSSVGPEL--------DV 198 (281)
T ss_dssp --------------------------------------------------------TSCBCTTCCCSTTC--------CE
T ss_pred --------------------------------------------------------CCCcCCcCCCCCCc--------eE
Confidence 25788999999976 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~ 608 (781)
+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 199 ~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------- 258 (281)
T 1to2_E 199 MAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------- 258 (281)
T ss_dssp EEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-------
T ss_pred EecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-------
Confidence 99999999998764 7999999999999999999999999999999999999999998763
Q ss_pred ccCCCCCCCCCcccCCcccccccCCC
Q 047013 609 DQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 609 ~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
+++.||||+||+.+|++.
T Consensus 259 --------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 --------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --------CHHHHTTCBCCHHHHTSS
T ss_pred --------CCCCcccceecHHHHhhh
Confidence 246899999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=429.97 Aligned_cols=258 Identities=30% Similarity=0.406 Sum_probs=219.4
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|... +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------ 61 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------ 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhcC--------------------------ccccccccCC------------
Confidence 4789887 799999999999999999999753 4445555432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ .++.+++++||+||+++
T Consensus 62 -----~~~~~d~~gHGT~vAgiia~~~~n~~--------g~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 125 (279)
T 1thm_A 62 -----DSTPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSG---SGTWTAVANGITYAADQ 125 (279)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCCC--------ccEEeCCCCEEEEEEeeCCCC---CccHHHHHHHHHHHHHC
Confidence 12456789999999999999864322 248999999999999998776 47788999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|++|||||||... ....+..++.++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 126 g~~Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 187 (279)
T 1thm_A 126 GAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------- 187 (279)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCCEEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC---------------
Confidence 9999999999873 2456788888999999999999999998777778888999999985422
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++||.+ ||+|||
T Consensus 188 -----------------------------------------------------~~~~~fS~~G~~~--------dv~APG 206 (279)
T 1thm_A 188 -----------------------------------------------------DNKSSFSTYGSWV--------DVAAPG 206 (279)
T ss_dssp -----------------------------------------------------SCBCTTCCCCTTC--------CEEEEC
T ss_pred -----------------------------------------------------CCcCCcCCCCCce--------EEEEcC
Confidence 4778999999876 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
++|+++++.+ .|..++|||||||||||++||| ++|.+++++||++|++||+++...+
T Consensus 207 ~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~-------- 263 (279)
T 1thm_A 207 SSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG-------- 263 (279)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------
T ss_pred CCeEEEeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------
Confidence 9999998764 8999999999999999999999 5899999999999999999874321
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
..||+|+||+.+|++
T Consensus 264 ------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 264 ------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ------TTBSSEECCHHHHHH
T ss_pred ------ccccCCeeCHHHHhc
Confidence 478999999999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=443.83 Aligned_cols=265 Identities=27% Similarity=0.342 Sum_probs=217.3
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++ +.+.++|..++...
T Consensus 31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~~~~-------- 76 (327)
T 2x8j_A 31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAER--------------------------IIGGVNLTTDYGGD-------- 76 (327)
T ss_dssp HHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG--------------------------EEEEEECSSGGGGC--------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc--------------------------ccCCccccCCCCCC--------
Confidence 47999999999999999999999999999753 55556666543211
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
.....|..||||||||||+|..+ +..+.||||+|+|+.+|+++..+ .++.+++++||+||++
T Consensus 77 -----~~~~~d~~gHGT~VAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 139 (327)
T 2x8j_A 77 -----ETNFSDNNGHGTHVAGTVAAAET---------GSGVVGVAPKADLFIIKALSGDG---SGEMGWIAKAIRYAVDW 139 (327)
T ss_dssp -----TTCCCCSSSHHHHHHHHHHCCCC---------SSBCCCSSTTCEEEEEECSCTTS---EECHHHHHHHHHHHHHC
T ss_pred -----CCCCCCCCCchHHHHHHHhccCC---------CCCcEeeCCCCEEEEEEeECCCC---CcCHHHHHHHHHHHHhh
Confidence 12356889999999999999841 12358999999999999998766 4678899999999999
Q ss_pred -----cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC-----CCccCCCCceEEecccCCceeee
Q 047013 292 -----DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE-----KTVDNVPPWVLTVGASTTDREFS 361 (781)
Q Consensus 292 -----~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~d~~~~ 361 (781)
.+++|||||||... ....+..++..+.++|++||+||||+|... ..++...+++|+|||++.+
T Consensus 140 ~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~---- 212 (327)
T 2x8j_A 140 RGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD---- 212 (327)
T ss_dssp CCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT----
T ss_pred cccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC----
Confidence 89999999999873 235678888899999999999999999652 3455567899999985422
Q ss_pred eeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHh
Q 047013 362 SYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQ 441 (781)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 441 (781)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCC
Q 047013 442 AGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDP 521 (781)
Q Consensus 442 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 521 (781)
+.++.||++||.+
T Consensus 213 ----------------------------------------------------------------~~~~~fS~~G~~~--- 225 (327)
T 2x8j_A 213 ----------------------------------------------------------------LRLSDFTNTNEEI--- 225 (327)
T ss_dssp ----------------------------------------------------------------CCBSCC---CCCC---
T ss_pred ----------------------------------------------------------------CCCCCccCCCCCc---
Confidence 5788999999865
Q ss_pred CCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh-----CCCCCHHHHHHHHHhc
Q 047013 522 AILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL-----HPDWSPAAIKSAIMTT 596 (781)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~lt~~~ik~~L~~T 596 (781)
||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+||++|++|
T Consensus 226 -----di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~t 287 (327)
T 2x8j_A 226 -----DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287 (327)
T ss_dssp -----SEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTT
T ss_pred -----eEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHh
Confidence 9999999999998764 7999999999999999999999999 9999999999999999
Q ss_pred cccCCCCCCcccccCCCCCCCCCcccCCcccccccCCC
Q 047013 597 ATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 597 A~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
|++++ +++..+|+|++|+.+|++.
T Consensus 288 A~~~g--------------~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 288 ATPIG--------------FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp EECCS--------------SCHHHHTTCEECTTHHHHH
T ss_pred CccCC--------------CCCCceeeeEECHHHHHHh
Confidence 98763 1346899999999999984
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-51 Score=433.16 Aligned_cols=266 Identities=23% Similarity=0.251 Sum_probs=211.8
Q ss_pred CCCC-CceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCC
Q 047013 139 ARFG-EDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPEN 217 (781)
Q Consensus 139 ~~~G-~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~ 217 (781)
.++| +||+|||||||||++||+|+++ .+..+.+... ..
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~---------------~~ 41 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAP---------------TA 41 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSC---------------CC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCC---------------CC
Confidence 3578 7999999999999999999864 1111111110 11
Q ss_pred CCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCCcEE
Q 047013 218 LTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDII 297 (781)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~dVI 297 (781)
.....|.+||||||||||+|+.. ..+.||||+|+|+.+|++.+... ..+...+++||+||++++++||
T Consensus 42 ~~~d~~~~gHGT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~~~~Vi 109 (282)
T 3zxy_A 42 ARSDGFMSAHGTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRR--RITQLDLARGIERAVNAGAHII 109 (282)
T ss_dssp CCTTCHHHHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSS--CCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCCCCCCcccceeehhhccCC----------ceeeeeccccceEeeEeeccccc--cchHHHHHHHHHHhhccCCeEE
Confidence 12334567999999999999742 23589999999999999865442 3678889999999999999999
Q ss_pred EecCCCCC-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEEeeee
Q 047013 298 SASLGSKP-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGAS 376 (781)
Q Consensus 298 N~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~ 376 (781)
|||||... .......+..++..+.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 110 n~S~G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 170 (282)
T 3zxy_A 110 NISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------- 170 (282)
T ss_dssp EECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------
T ss_pred eccCccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------
Confidence 99999763 2233455778888999999999999999998877777788999999984322
Q ss_pred eeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCc
Q 047013 377 IAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQ 456 (781)
Q Consensus 377 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 456 (781)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEE
Q 047013 457 NISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDII 536 (781)
Q Consensus 457 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 536 (781)
+.++.||+||+. ..||||+|||++|+
T Consensus 171 -------------------------------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~ 196 (282)
T 3zxy_A 171 -------------------------------------------------GHPLDFSNWGST-----YEQQGILAPGEDIL 196 (282)
T ss_dssp -------------------------------------------------SCBCSSSCCCHH-----HHHHEEEEECSSEE
T ss_pred -------------------------------------------------CccccccCCCCC-----ccccceeccCccee
Confidence 577889999864 46889999999999
Q ss_pred eeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC----CCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 537 AAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH----PDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 537 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
++++.+ .|..++|||||||||||++|||+|++ |.++|++||++|++||++++..
T Consensus 197 s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~--------- 254 (282)
T 3zxy_A 197 GAKPGG-------------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD--------- 254 (282)
T ss_dssp EECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC------------
T ss_pred eecCCC-------------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------
Confidence 998874 89999999999999999999999874 7899999999999999876432
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
.+.....+|+|+||+.+|++
T Consensus 255 -~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 255 -APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp -----CGGGTTCBCCHHHHHH
T ss_pred -CCCccCceeeeEeCHHHHHH
Confidence 22345689999999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=430.24 Aligned_cols=281 Identities=27% Similarity=0.320 Sum_probs=223.9
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~--------------------------~~~~~~~~~~~~---------- 59 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATT---------- 59 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSS----------
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc--------------------------ccccccccCCCC----------
Confidence 47999999999999999999999999999753 344455543210
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
.......|..||||||||||+|.... ....+.||||+|+|+.+|++++.+ .+..+++++||+|++++
T Consensus 60 ---~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 126 (310)
T 2ixt_A 60 ---PINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSG---SGYSDDIAAAIRHAADQ 126 (310)
T ss_dssp ---CEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCC---CCcHHHHHHHHHHHHHh
Confidence 00124568899999999999998521 122358999999999999998776 46889999999999999
Q ss_pred CC-----cEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCC--CCccCCCCceEEecccCCceeeeeeEE
Q 047013 293 GV-----DIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAE--KTVDNVPPWVLTVGASTTDREFSSYVT 365 (781)
Q Consensus 293 g~-----dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgA~~~d~~~~~~~~ 365 (781)
++ +|||||||... ....+..++.++.++|++||+||||+|... ..++...+++|+|||++...
T Consensus 127 ~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~------- 196 (310)
T 2ixt_A 127 ATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ------- 196 (310)
T ss_dssp HHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-------
T ss_pred hhccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-------
Confidence 88 99999999873 245678888899999999999999999763 44556779999999853210
Q ss_pred eCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCce
Q 047013 366 LGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAV 445 (781)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~ 445 (781)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCC--ccccccCCCCCCCC---
Q 047013 446 GMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSR--MTSFFSARGPNLID--- 520 (781)
Q Consensus 446 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~--- 520 (781)
..+ .++.||++||....
T Consensus 197 ----------------------------------------------------------~~g~~~~~~~S~~G~~~~~g~~ 218 (310)
T 2ixt_A 197 ----------------------------------------------------------QNGTYRVADYSSRGYISTAGDY 218 (310)
T ss_dssp ----------------------------------------------------------ETTEEEECTTSCCCCTTTTTSS
T ss_pred ----------------------------------------------------------cCCCeeeccccCCCCccCCccc
Confidence 012 67889999995421
Q ss_pred -CCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047013 521 -PAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599 (781)
Q Consensus 521 -~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~ 599 (781)
..+.||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||++
T Consensus 219 ~~~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~ 285 (310)
T 2ixt_A 219 VIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKS 285 (310)
T ss_dssp SCCTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred cccCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcc
Confidence 1235999999999999998764 79999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCCCCCCcccCCcccc
Q 047013 600 EDSSKHPILDQVTGQKATPFAYGAGHVNP 628 (781)
Q Consensus 600 ~~~~g~~~~~~~~~~~~~~~~~G~G~in~ 628 (781)
++..+. ......++..+|||++|+
T Consensus 286 ~~~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 286 VDIKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp SCCCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred cCCCCC-----cccccCCccccccceeec
Confidence 764321 222455678999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=433.92 Aligned_cols=265 Identities=28% Similarity=0.412 Sum_probs=219.4
Q ss_pred ccccccCCCCC--ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCC
Q 047013 133 DSAWNKARFGE--DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNS 210 (781)
Q Consensus 133 ~~~w~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (781)
..+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+...
T Consensus 18 ~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~~~------- 63 (320)
T 2z30_A 18 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------------------IAWCVSTLRGKVS------- 63 (320)
T ss_dssp GGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG--------------------------EEEEEECGGGCCB-------
T ss_pred HHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc--------------------------cccCccccCCccC-------
Confidence 4899988 999 999999999999999999753 3344444432100
Q ss_pred CCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh
Q 047013 211 SFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI 290 (781)
Q Consensus 211 ~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~ 290 (781)
.+.....|..||||||||||+|.. + ...+.||||+|+|+.+|+++..+ .++.+++++||+||+
T Consensus 64 -----~~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~i~~ai~~a~ 126 (320)
T 2z30_A 64 -----TKLRDCADQNGHGTHVIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLDARG---SGSYSDIAIGIEQAI 126 (320)
T ss_dssp -----CCHHHHBCSSSHHHHHHHHHHCCS-S--------SBSCCCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCCHHHHHHHHHccc-C--------CCceEeeCCCCEEEEEEeeCCCC---CccHHHHHHHHHHHH
Confidence 001124678999999999999973 1 12348999999999999998766 477899999999999
Q ss_pred hc--------------------CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEE
Q 047013 291 HD--------------------GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLT 350 (781)
Q Consensus 291 ~~--------------------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vit 350 (781)
++ +++|||||||... ....+..++.++.++|++||+||||+|.....++...|++|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~ 203 (320)
T 2z30_A 127 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIA 203 (320)
T ss_dssp HTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEE
T ss_pred hCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEE
Confidence 87 9999999999873 245677888889999999999999999877777788899999
Q ss_pred ecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCC
Q 047013 351 VGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAK 430 (781)
Q Consensus 351 VgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 430 (781)
|||++.+
T Consensus 204 Vga~~~~------------------------------------------------------------------------- 210 (320)
T 2z30_A 204 VGAIDSN------------------------------------------------------------------------- 210 (320)
T ss_dssp EEEECTT-------------------------------------------------------------------------
T ss_pred EEeeCCC-------------------------------------------------------------------------
Confidence 9985422
Q ss_pred cchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCcccc
Q 047013 431 IGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF 510 (781)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (781)
+.++.
T Consensus 211 ---------------------------------------------------------------------------~~~~~ 215 (320)
T 2z30_A 211 ---------------------------------------------------------------------------DNIAS 215 (320)
T ss_dssp ---------------------------------------------------------------------------SCBCT
T ss_pred ---------------------------------------------------------------------------CCcCc
Confidence 57889
Q ss_pred ccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC---------
Q 047013 511 FSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH--------- 581 (781)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~--------- 581 (781)
||++|| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 216 ~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~ 272 (320)
T 2z30_A 216 FSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILP 272 (320)
T ss_dssp TSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccc
Confidence 999997 7899999999998764 89999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCC
Q 047013 582 ----PDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 582 ----p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
|.|++.+||++|++||+++...| ....||||+||+.+|++.
T Consensus 273 ~~~~p~lt~~~v~~~L~~ta~~~~~~g------------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 273 VGTFDDISKNTVRGILHITADDLGPTG------------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCTTCCSTTSHHHHHHHHSBCCSSSS------------SBTTTBTCBCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhhCccCCCCC------------CCCCcCCceeCHHHHHHH
Confidence 99999999999999999874322 346799999999999874
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=431.68 Aligned_cols=273 Identities=25% Similarity=0.307 Sum_probs=219.3
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+++|+....++||+|||||||||++||+|.++ .+.+..++..+
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-------------------------~~~~~~~~~~~------------ 53 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA-------------------------DLTRLPSLVSG------------ 53 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-------------------------EEEECC-----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-------------------------cccCCCcccCC------------
Confidence 48999987779999999999999999999764 12222222221
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
+.....|.+||||||||||+|+.. +.+.||||+|+|+.+|++.+.+. .+....+++||+||+++
T Consensus 54 ----~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~ 117 (306)
T 4h6w_A 54 ----EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESL--KLSQLDLSRAIEQAVNN 117 (306)
T ss_dssp ---------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSC--CCCHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccc--cchHHHHHHHHHHhhcc
Confidence 011345778999999999999742 23589999999999999865432 46788899999999999
Q ss_pred CCcEEEecCCCCC-CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceE
Q 047013 293 GVDIISASLGSKP-KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMV 371 (781)
Q Consensus 293 g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~ 371 (781)
+++|||+|||... .......+..++..+.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 118 g~~vi~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 183 (306)
T 4h6w_A 118 GANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------------- 183 (306)
T ss_dssp TCSEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------
T ss_pred cceeeeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------
Confidence 9999999999752 2234455788888999999999999999998777777788999999985432
Q ss_pred EeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEec
Q 047013 372 IKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILAN 451 (781)
Q Consensus 372 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~ 451 (781)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeC
Q 047013 452 SREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAP 531 (781)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (781)
+.+++||++|+. ..||||+||
T Consensus 184 ------------------------------------------------------~~~~~~s~~g~~-----~~~~di~AP 204 (306)
T 4h6w_A 184 ------------------------------------------------------GKPVDFSNWGDA-----YQKQGILAP 204 (306)
T ss_dssp ------------------------------------------------------SCBCSSSCBCHH-----HHHHEEEEE
T ss_pred ------------------------------------------------------CCccccccccCC-----cCcceeecC
Confidence 467889999954 468899999
Q ss_pred CCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 532 GVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL----HPDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
|++|+++++.+ .|..++|||||||||||++|||+++ +|.|+|++||++|++||++++..+
T Consensus 205 G~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~--- 268 (306)
T 4h6w_A 205 GKDILGAKPNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD--- 268 (306)
T ss_dssp CSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT---
T ss_pred CcCcccccCCC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC---
Confidence 99999998864 8999999999999999999999865 699999999999999999875432
Q ss_pred cccCCCCCCCCCcccCCcccccccCCC
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
..+...||+|+||+.+|++.
T Consensus 269 -------~~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 269 -------TDDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp -------CSCGGGGTTCBCCHHHHHHH
T ss_pred -------CCCCCCcceeecCHHHHHHH
Confidence 22345799999999999983
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=436.37 Aligned_cols=270 Identities=21% Similarity=0.158 Sum_probs=216.9
Q ss_pred ccccccCCCCC--ceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCC
Q 047013 133 DSAWNKARFGE--DVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNS 210 (781)
Q Consensus 133 ~~~w~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (781)
..+|+. .+|+ ||+||||||||| +||+|.++ +...++|.++-
T Consensus 33 ~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~--------------------------~~~~~~~~~~~--------- 75 (347)
T 2iy9_A 33 TETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS--------------------------EFAKFSFTQDG--------- 75 (347)
T ss_dssp CHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC--------------------------EEEEEECBTTC---------
T ss_pred HHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC--------------------------cccCCcccCCC---------
Confidence 478988 8999 999999999999 99999753 44444554320
Q ss_pred CCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh
Q 047013 211 SFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI 290 (781)
Q Consensus 211 ~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~ 290 (781)
.|.......|..||||||||||+|. .| +.||||+|+|+.+|++++.+ . .++++||+||+
T Consensus 76 ---~~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~----~--~~~~~ai~~a~ 134 (347)
T 2iy9_A 76 ---SPFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGV----Q--DSWIRAIESIM 134 (347)
T ss_dssp ---CSSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBC----T--THHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCC----H--HHHHHHHHHHH
Confidence 0011224567899999999999997 22 38999999999999997654 2 29999999999
Q ss_pred hc------CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCC-------CCCccCCCC----------c
Q 047013 291 HD------GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPA-------EKTVDNVPP----------W 347 (781)
Q Consensus 291 ~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~ 347 (781)
++ |++|||||||..........+..++..+.++|++||+||||+|.. ...++...+ +
T Consensus 135 ~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~ 214 (347)
T 2iy9_A 135 SNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDP 214 (347)
T ss_dssp TCTTSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCC
T ss_pred hhhhcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCC
Confidence 99 999999999976433455678888899999999999999999975 334555667 9
Q ss_pred eEEecccCC--ceeeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEE
Q 047013 348 VLTVGASTT--DREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILI 425 (781)
Q Consensus 348 vitVgA~~~--d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 425 (781)
+|+|||++. +...
T Consensus 215 vi~Vga~~~~~~g~~----------------------------------------------------------------- 229 (347)
T 2iy9_A 215 VIRVAALAQYRKGET----------------------------------------------------------------- 229 (347)
T ss_dssp EEEEEEECCCCTTSC-----------------------------------------------------------------
T ss_pred EEEEEEcccCCCCce-----------------------------------------------------------------
Confidence 999998654 2100
Q ss_pred EecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccC
Q 047013 426 CYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWS 505 (781)
Q Consensus 426 ~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 505 (781)
....
T Consensus 230 ----------------------------------------------------------------------------~~~~ 233 (347)
T 2iy9_A 230 ----------------------------------------------------------------------------PVLH 233 (347)
T ss_dssp ----------------------------------------------------------------------------CCBC
T ss_pred ----------------------------------------------------------------------------eccc
Confidence 0001
Q ss_pred CccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCC
Q 047013 506 RMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWS 585 (781)
Q Consensus 506 ~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt 585 (781)
+.++.||++||+ ||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|+
T Consensus 234 ~~~~~fS~~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt 293 (347)
T 2iy9_A 234 GGGITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRAT 293 (347)
T ss_dssp CCSSSCBCBCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCCCCCCCCCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCC
Confidence 356799999984 569999999999999864 899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCC
Q 047013 586 PAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 586 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
+.+||++|++||+++... ....+|+|+||+.+|++.
T Consensus 294 ~~~v~~~L~~tA~~~~~~-------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 294 ATELKRTLLESADKYPSL-------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHHHHHHHHSEECGGG-------------TTTSGGGEECCHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCC-------------CCccccCCEecHHHHHHH
Confidence 999999999999987432 125899999999999985
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=467.18 Aligned_cols=357 Identities=22% Similarity=0.230 Sum_probs=247.6
Q ss_pred CCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-----cCCcE
Q 047013 222 IDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH-----DGVDI 296 (781)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~-----~g~dV 296 (781)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++.... ..++...++.+|.+|++ .|++|
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g-~~~t~s~l~~AI~~Aid~a~~~~gadV 336 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLG-SMETGTALVRAMTKVMELCRDGRRIDV 336 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTS-SCBCHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCC-cccChHHHHHHHHHHHHHHhhcCCceE
Confidence 578999999999999986 22 23589999999999999876541 12356778888888877 79999
Q ss_pred EEecCCCCCCCCCCChHHHHHHHHH-hCCCEEEEecCCCCCCCCCc--cCC--CCceEEecccCCceeeeeeEEeCCceE
Q 047013 297 ISASLGSKPKEHFESSVAVGSFHAM-MHGILVVASAGNSGPAEKTV--DNV--PPWVLTVGASTTDREFSSYVTLGNKMV 371 (781)
Q Consensus 297 IN~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~~--~~~--~p~vitVgA~~~d~~~~~~~~~~~~~~ 371 (781)
||||||........+.+..++.++. ++|++||+||||+|....+. ++. .+++|+|||++.+......
T Consensus 337 INmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~-------- 408 (1354)
T 3lxu_X 337 INMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE-------- 408 (1354)
T ss_dssp EEECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------
T ss_pred EEcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc--------
Confidence 9999999854344567788888886 89999999999999765443 333 7999999997543210000
Q ss_pred EeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEec
Q 047013 372 IKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILAN 451 (781)
Q Consensus 372 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~ 451 (781)
|.
T Consensus 409 --------------------ys---------------------------------------------------------- 410 (1354)
T 3lxu_X 409 --------------------YA---------------------------------------------------------- 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cc----------------------------------------------------------
Confidence 00
Q ss_pred CCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeC
Q 047013 452 SREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAP 531 (781)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (781)
......+.+++|||+||+. ++++||||+||
T Consensus 411 ------------------------------------------------~~~~~~g~~asFSS~GPt~--dg~~KpDIaAP 440 (1354)
T 3lxu_X 411 ------------------------------------------------MREKLPGNVYTWTSRDPCI--DGGQGVTVCAP 440 (1354)
T ss_dssp -------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEE
T ss_pred ------------------------------------------------cccCCCCccccccCCCCCc--cCCCcceEEec
Confidence 0000126889999999998 89999999999
Q ss_pred CCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcc
Q 047013 532 GVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKT----LHPDWSPAAIKSAIMTTATTEDSSKHPI 607 (781)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lt~~~ik~~L~~TA~~~~~~g~~~ 607 (781)
|++|+++..... +.|..++|||||||||||++|||++ .+|.|++.+||++|++||++++.
T Consensus 441 G~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~----- 504 (1354)
T 3lxu_X 441 GGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY----- 504 (1354)
T ss_dssp C--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT-----
T ss_pred CceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC-----
Confidence 999999865422 2789999999999999999999986 79999999999999999988642
Q ss_pred cccCCCCCCCCCcccCCcccccccCCCCeeecCCCcccccccccCCCccc-ceecccCCCCCCCCCCCCCCCCCCCCeEE
Q 047013 608 LDQVTGQKATPFAYGAGHVNPNSALDPGLVYDLGPGDYLAYLCGLGYNQS-IIDLFTQPKEPFKCPGPFSIADFNYPSIA 686 (781)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~ps~~ 686 (781)
.+++.||+|+||+.+|++..+.|+..+.+++.|.|..+.... .|.+-.. .
T Consensus 505 --------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~~-----~---------------- 555 (1354)
T 3lxu_X 505 --------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQG-----V---------------- 555 (1354)
T ss_dssp --------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECSS-----C----------------
T ss_pred --------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEecc-----c----------------
Confidence 245689999999999999999999999999999999885322 2221100 0
Q ss_pred EecCCCCcEEEEEEE----EecC---C-CCeeE--EEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCC
Q 047013 687 VPNLVNGSMTVSRRL----KNVG---T-PTCTY--KAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVAT 756 (781)
Q Consensus 687 ~~~~~~~~~~~~~tv----~n~~---~-~~~~y--~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 756 (781)
. ....+++++| .|.. . ....| ++.+.... .+-..|..+.+ .++.++|.|++++ ... ..
T Consensus 556 ---~-~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~--~wv~~p~~l~l--~~~~r~~~v~vDp---~~L-~~ 623 (1354)
T 3lxu_X 556 ---Q-RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ--PWVQCGAFLDL--SYGTRSIAVRVDP---TGL-QP 623 (1354)
T ss_dssp ---C-CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS--TTEEECSCEEC--TTSCEEEEEEECG---GGC-CS
T ss_pred ---c-CCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC--Cceecccceee--cCCCceEEEEECC---CCC-CC
Confidence 0 1234444443 2211 1 11112 22222221 12223777766 5777889999998 233 55
Q ss_pred ceEEEEEEEEc-----CcceEEEEEEEEeC
Q 047013 757 DYVFGELVWSD-----GFHNVKSTIAVKLQ 781 (781)
Q Consensus 757 ~~~~G~i~~~~-----~~~~v~~P~~~~~~ 781 (781)
+.+++.|..-| .+...|||+-|..|
T Consensus 624 G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 624 GVHSAVIRAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp EEEEEEEEEEESSCTTSCCSEEEEEEEEEC
T ss_pred cceeEEEEEEEcCCcccCceEEeeEEEEee
Confidence 67899998765 26899999998765
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=430.00 Aligned_cols=301 Identities=24% Similarity=0.324 Sum_probs=221.3
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCC-CCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDT-NKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~-~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
..+|+.+++|+||+||||||||+ +||+|.++-. ..|+-...... .+.......-.....+.+.+...
T Consensus 22 ~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------- 89 (340)
T 3lpc_A 22 DKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL----PGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG------- 89 (340)
T ss_dssp HHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC----CCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS-------
T ss_pred HHHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc----cCccccCCccccccCCCccCCcccccccccccccc-------
Confidence 58999999999999999999998 9999986411 11110000000 00000000000000000000000
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
..|.+.....|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ +..++++++|+|+++
T Consensus 90 -~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~~~~----~~~~~~~~ai~~a~~ 156 (340)
T 3lpc_A 90 -GRPDPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALGRCG----GYDSDISDGLYWAAG 156 (340)
T ss_dssp -CTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCBTTB----CCHHHHHHHHHHHHT
T ss_pred -CCCCcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEecCCC----CcHHHHHHHHHHHhc
Confidence 0122233567889999999999999864332 248999999999999998765 778999999999997
Q ss_pred ----------cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC-CccCCCCceEEecccCCceee
Q 047013 292 ----------DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK-TVDNVPPWVLTVGASTTDREF 360 (781)
Q Consensus 292 ----------~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~d~~~ 360 (781)
.+++|||||||... .....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 157 ~~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--- 231 (340)
T 3lpc_A 157 GRIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--- 231 (340)
T ss_dssp CCCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT---
T ss_pred ccccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC---
Confidence 89999999999762 23445777888899999999999999997643 345677999999985422
Q ss_pred eeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHH
Q 047013 361 SSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAA 440 (781)
Q Consensus 361 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 440 (781)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCC
Q 047013 441 QAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLID 520 (781)
Q Consensus 441 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 520 (781)
+.++.||++||.+
T Consensus 232 -----------------------------------------------------------------~~~~~~S~~g~~~-- 244 (340)
T 3lpc_A 232 -----------------------------------------------------------------GIRASFSNYGVDV-- 244 (340)
T ss_dssp -----------------------------------------------------------------SSBCTTCCBSTTC--
T ss_pred -----------------------------------------------------------------CCcCCCCCCCCCc--
Confidence 5788999999854
Q ss_pred CCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHh-C---CCCCHHHHHHHHHhc
Q 047013 521 PAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL-H---PDWSPAAIKSAIMTT 596 (781)
Q Consensus 521 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~lt~~~ik~~L~~T 596 (781)
||+|||++|+++++.+... .....|..++|||||||||||++|||+|+ + |.|++++||++|++|
T Consensus 245 ------di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~t 312 (340)
T 3lpc_A 245 ------DLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312 (340)
T ss_dssp ------CEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred ------eEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhc
Confidence 9999999999998865321 11236999999999999999999999998 5 999999999999999
Q ss_pred cccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCC
Q 047013 597 ATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPG 635 (781)
Q Consensus 597 A~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 635 (781)
|+++.. .+...+|+|+||+.+|++..
T Consensus 313 A~~~~~-------------~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 313 TSPFNG-------------RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp CBCCSS-------------CCSSCCCSSBCCHHHHHHHH
T ss_pred CCcCCC-------------CCCCCcccceecHHHHHHHH
Confidence 987631 23468999999999998753
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=408.43 Aligned_cols=235 Identities=29% Similarity=0.384 Sum_probs=202.2
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++ +...++|.++
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------ 60 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR--------------------------SVSGYDFVDN------------ 60 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC--------------------------EEEEEETTTT------------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC--------------------------ccccccccCC------------
Confidence 57999999999999999999999999999753 3334445432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..||||||||||+|.. .||||+|+|+.+|+++..+ .++.+++++||+|++++
T Consensus 61 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g---~~~~~~~~~ai~~a~~~ 118 (284)
T 1sh7_A 61 -----DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSG---SGTTSGVISGVDWVAQN 118 (284)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHHHhC
Confidence 1245688999999999999873 6999999999999998776 47889999999999974
Q ss_pred --CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC-CccCCCCceEEecccCCceeeeeeEEeCCc
Q 047013 293 --GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK-TVDNVPPWVLTVGASTTDREFSSYVTLGNK 369 (781)
Q Consensus 293 --g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~d~~~~~~~~~~~~ 369 (781)
+++|||||||.. ....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 119 ~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 182 (284)
T 1sh7_A 119 ASGPSVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS------------ 182 (284)
T ss_dssp CCSSEEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT------------
T ss_pred CCCCcEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC------------
Confidence 799999999987 3456788888999999999999999997543 345677999999985422
Q ss_pred eEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEE
Q 047013 370 MVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMIL 449 (781)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~ 449 (781)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeee
Q 047013 450 ANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVI 529 (781)
Q Consensus 450 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (781)
+.++.||++||++ ||+
T Consensus 183 --------------------------------------------------------~~~~~~S~~G~~~--------di~ 198 (284)
T 1sh7_A 183 --------------------------------------------------------DSRSSFSNWGSCV--------DLF 198 (284)
T ss_dssp --------------------------------------------------------SBBCTTCCBSTTC--------CEE
T ss_pred --------------------------------------------------------CCcCcccCCCCcc--------EEE
Confidence 5788999999977 999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||++.
T Consensus 199 ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 256 (284)
T 1sh7_A 199 APGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN 256 (284)
T ss_dssp EECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred eccCCeEEecCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 9999999998764 799999999999999999999999999999999999999999875
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=436.04 Aligned_cols=294 Identities=24% Similarity=0.296 Sum_probs=225.0
Q ss_pred ccccc-cCCCCCceEEEEecCCCCc------CCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhh
Q 047013 133 DSAWN-KARFGEDVIIGNLDSGVWP------ESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESC 205 (781)
Q Consensus 133 ~~~w~-~~~~G~gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~ 205 (781)
+.+|. .+++|+||+|||||||||+ .||+|.++ +...++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~--------------------------i~~~~~~~~~----- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK--------------------------ITALYALGRT----- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC--------------------------EEEEEETTTT-----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC--------------------------EeeeccccCC-----
Confidence 37897 7999999999999999999 79999753 4444444321
Q ss_pred ccCCCCCccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHH
Q 047013 206 RAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAG 285 (781)
Q Consensus 206 ~~~~~~~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~a 285 (781)
..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..+.. .+...++.++
T Consensus 60 -------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~-~~~~~~~~~a 114 (434)
T 1wmd_A 60 -------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTL 114 (434)
T ss_dssp -------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHH
T ss_pred -------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCcc-ccccHHHHHH
Confidence 2456789999999999998641 24799999999999999766521 1245789999
Q ss_pred HHHhhhcCCcEEEecCCCCCCCCCCChHHHHHHHH-HhCCCEEEEecCCCCCCCC--CccCCCCceEEecccCCceeeee
Q 047013 286 FDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHA-MMHGILVVASAGNSGPAEK--TVDNVPPWVLTVGASTTDREFSS 362 (781)
Q Consensus 286 i~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~d~~~~~ 362 (781)
|++++++|++|||||||......+ +....++.++ .++|++||+||||+|.... ..++..+++|+|||++..+...
T Consensus 115 i~~a~~~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~- 192 (434)
T 1wmd_A 115 FSQAYSAGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF- 192 (434)
T ss_dssp HHHHHHTTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-
T ss_pred HHHHHhcCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-
Confidence 999999999999999998742222 4455666665 5899999999999997643 3455789999999965432000
Q ss_pred eEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhc
Q 047013 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA 442 (781)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 442 (781)
.
T Consensus 193 ----------------------------------------------~--------------------------------- 193 (434)
T 1wmd_A 193 ----------------------------------------------G--------------------------------- 193 (434)
T ss_dssp ----------------------------------------------C---------------------------------
T ss_pred ----------------------------------------------C---------------------------------
Confidence 0
Q ss_pred CceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCC
Q 047013 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPA 522 (781)
Q Consensus 443 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 522 (781)
......+.+++|||+||+. ++
T Consensus 194 ---------------------------------------------------------~~~~~~~~~a~fS~~G~~~--~g 214 (434)
T 1wmd_A 194 ---------------------------------------------------------SYADNINHVAQFSSRGPTK--DG 214 (434)
T ss_dssp ---------------------------------------------------------GGGSCTTSBCTTSCCCCCT--TS
T ss_pred ---------------------------------------------------------cccCCCCccccccCCCCCC--CC
Confidence 0001136899999999998 99
Q ss_pred CccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCC-----CHHHHHHHHHhcc
Q 047013 523 ILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW-----SPAAIKSAIMTTA 597 (781)
Q Consensus 523 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----t~~~ik~~L~~TA 597 (781)
++||||+|||++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||
T Consensus 215 ~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA 293 (434)
T 1wmd_A 215 RIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293 (434)
T ss_dssp CCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred CCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCC
Confidence 99999999999999998642210000 00012479999999999999999999999998865 8999999999999
Q ss_pred ccCCCCCCcccccCCCCCCCCCcccCCcccccccCCCC
Q 047013 598 TTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPG 635 (781)
Q Consensus 598 ~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 635 (781)
+++.. .++.+.||||++|+.+|++..
T Consensus 294 ~~~~~------------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 294 ADIGL------------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp BCCSS------------CSSCTTTTTCBCCHHHHHTCE
T ss_pred cccCC------------CCCCccCCcCeEeHHHhcccc
Confidence 87521 235678999999999999754
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=403.71 Aligned_cols=237 Identities=29% Similarity=0.385 Sum_probs=201.6
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~--------------------------~~~~~d~~~~------------ 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR--------------------------ASSGYDFIDN------------ 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTTT------------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc--------------------------cccCeecCCC------------
Confidence 57899999999999999999999999999753 3334444432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
...+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..+++++||+|+++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 120 (278)
T 2b6n_A 63 -----DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSG---SGSNSGVIAGINWVKNN 120 (278)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCC---CccHHHHHHHHHHHHhC
Confidence 1245688999999999999873 6999999999999998776 4788999999999997
Q ss_pred -cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC-ccCCCCceEEecccCCceeeeeeEEeCCc
Q 047013 292 -DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT-VDNVPPWVLTVGASTTDREFSSYVTLGNK 369 (781)
Q Consensus 292 -~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~d~~~~~~~~~~~~ 369 (781)
.+++|||||||... ...+..++.++.++|++||+||||+|..... ++...+++|+|||++.+
T Consensus 121 ~~g~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 184 (278)
T 2b6n_A 121 ASGPAVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN------------ 184 (278)
T ss_dssp CCSSEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------
T ss_pred CCCCeEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC------------
Confidence 59999999999863 4567788888999999999999999976543 45577999999985422
Q ss_pred eEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEE
Q 047013 370 MVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMIL 449 (781)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~ 449 (781)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeee
Q 047013 450 ANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVI 529 (781)
Q Consensus 450 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (781)
+.++.||++||.+ ||+
T Consensus 185 --------------------------------------------------------~~~~~~S~~G~~~--------di~ 200 (278)
T 2b6n_A 185 --------------------------------------------------------DSRSSFSNYGTCL--------DIY 200 (278)
T ss_dssp --------------------------------------------------------SBBCTTCCBSTTC--------CEE
T ss_pred --------------------------------------------------------CCcCCcCCCCCCC--------eEE
Confidence 4778999999866 999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
|||++|++++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++.
T Consensus 201 ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 201 APGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp EECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred eCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999999986532 2799999999999999999999999999999999999999999874
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=405.58 Aligned_cols=236 Identities=28% Similarity=0.366 Sum_probs=203.3
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------- 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR--------------------------ARVGYDALG------------- 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTS-------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC--------------------------eeccccCCC-------------
Confidence 57899999999999999999999999999753 333333332
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
....|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..+.++++++|+++.
T Consensus 62 ------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 118 (276)
T 4dzt_A 62 ------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNG---SGSTSGVIAGVDWVTRN 118 (276)
T ss_dssp ------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 145678999999999999873 7999999999999998776 57889999999999987
Q ss_pred --CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc-cCCCCceEEecccCCceeeeeeEEeCCc
Q 047013 293 --GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV-DNVPPWVLTVGASTTDREFSSYVTLGNK 369 (781)
Q Consensus 293 --g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgA~~~d~~~~~~~~~~~~ 369 (781)
+++|||||||.. ....+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 119 ~~~~~vin~S~g~~----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 181 (276)
T 4dzt_A 119 HRRPAVANMSLGGG----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------- 181 (276)
T ss_dssp CCSSEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------
T ss_pred CCCCeEEEECCCCC----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------------
Confidence 899999999976 346688888999999999999999999765443 567789999998432
Q ss_pred eEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEE
Q 047013 370 MVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMIL 449 (781)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~ 449 (781)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeee
Q 047013 450 ANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVI 529 (781)
Q Consensus 450 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (781)
.+.++.||++||+. ||+
T Consensus 182 -------------------------------------------------------~~~~~~~S~~g~~~--------dv~ 198 (276)
T 4dzt_A 182 -------------------------------------------------------SDARASFSNYGSCV--------DLF 198 (276)
T ss_dssp -------------------------------------------------------TSBBCTTCCBSTTC--------CEE
T ss_pred -------------------------------------------------------CCCcCCcCCCCCCc--------eEE
Confidence 25788999999987 999
Q ss_pred eCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 047013 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTED 601 (781)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~ 601 (781)
|||++|++++..... .|..++|||||||+|||++|||+|++|++++++||++|++||++..
T Consensus 199 ApG~~i~s~~~~~~~-----------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 199 APGASIPSAWYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp EECSSEEEECTTSSS-----------CEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred eCCCCeEccccCCCC-----------ceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 999999999876432 7999999999999999999999999999999999999999999864
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=403.06 Aligned_cols=240 Identities=32% Similarity=0.387 Sum_probs=202.9
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
.|. ..+|+||+|+|||||||++||+|.++ +...++|.+
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~--------------------------~~~~~~~~~--------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTYYY--------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEESSS---------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc--------------------------cccccCCCC---------------
Confidence 454 37999999999999999999999753 333334431
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhcCC
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGV 294 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g~ 294 (781)
...|..||||||||||+|+. .||||+|+|+.+|++++.+ .++.+++++||+|++++++
T Consensus 62 -----~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a~~~~~ 119 (279)
T 2pwa_A 62 -----SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDKN 119 (279)
T ss_dssp -----CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHGG
T ss_pred -----CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCC---CcCHHHHHHHHHHHHhcCc
Confidence 34578999999999999873 7999999999999998776 4788999999999999887
Q ss_pred -------cEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC-CccCCCCceEEecccCCceeeeeeEEe
Q 047013 295 -------DIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK-TVDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 295 -------dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
+|||||||.. ....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 120 ~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------- 186 (279)
T 2pwa_A 120 NRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------- 186 (279)
T ss_dssp GSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------
T ss_pred cccCCCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------
Confidence 9999999976 3456888888999999999999999997643 345677999999985422
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
+.++.||++||++
T Consensus 187 -----------------------------------------------------------~~~~~~S~~G~~~-------- 199 (279)
T 2pwa_A 187 -----------------------------------------------------------DRRSSFSNYGSVL-------- 199 (279)
T ss_dssp -----------------------------------------------------------SBBCTTCCBSTTC--------
T ss_pred -----------------------------------------------------------CCcCCcCCCCCcc--------
Confidence 5788999999976
Q ss_pred eeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCc
Q 047013 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHP 606 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~ 606 (781)
||+|||++|+++++.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 200 di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~---- 261 (279)
T 2pwa_A 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL---- 261 (279)
T ss_dssp CEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC----
T ss_pred eEEEecCCeEEeecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc----
Confidence 9999999999999864 7999999999999999999999999 999999999999999987521
Q ss_pred ccccCCCCCCCCCcccCCcccc
Q 047013 607 ILDQVTGQKATPFAYGAGHVNP 628 (781)
Q Consensus 607 ~~~~~~~~~~~~~~~G~G~in~ 628 (781)
..+|+|..|+
T Consensus 262 ------------~~~~~g~~n~ 271 (279)
T 2pwa_A 262 ------------SNIPFGTVNL 271 (279)
T ss_dssp ------------BSCCTTSCCE
T ss_pred ------------CCCCCCCccE
Confidence 2467888776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=428.05 Aligned_cols=293 Identities=15% Similarity=0.196 Sum_probs=218.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++- .....++|.++ .
T Consensus 28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~------~----- 72 (471)
T 1p8j_A 28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------------------DPGASFDVNDQ------D----- 72 (471)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------------------CGGGCEETTTT------B-----
T ss_pred HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------------------CccCcccccCC------C-----
Confidence 689999999999999999999999999998630 00012233322 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
.+|.+.....|.+||||||||||||...++. .+.||||+|+|+.+|+++ +..+++++|++++++
T Consensus 73 ~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~-------g~~~~~~~ai~~a~~~ 137 (471)
T 1p8j_A 73 PDPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD-------GEVTDAVEARSLGLNP 137 (471)
T ss_dssp SCCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS-------SCCCHHHHHHHHTSCT
T ss_pred CCCCCccCCCCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccC-------CchhHHHHHHHhhhcc
Confidence 0112222456889999999999999754322 248999999999999985 335789999999999
Q ss_pred cCCcEEEecCCCCCCC----CCCChHHHHHHHHH-----hCCCEEEEecCCCCCCCCC--c--cCCCCceEEecccCCce
Q 047013 292 DGVDIISASLGSKPKE----HFESSVAVGSFHAM-----MHGILVVASAGNSGPAEKT--V--DNVPPWVLTVGASTTDR 358 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~--~--~~~~p~vitVgA~~~d~ 358 (781)
++++|||||||..... .....+..++.++. .+|++||+||||+|..... . ...++++|+|||++.+
T Consensus 138 ~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~- 216 (471)
T 1p8j_A 138 NHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF- 216 (471)
T ss_dssp TTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-
T ss_pred CCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-
Confidence 9999999999986321 11223445555554 3699999999999975322 1 2245889999985432
Q ss_pred eeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHH
Q 047013 359 EFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQR 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 438 (781)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 439 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
+.++.||++||..
T Consensus 217 -------------------------------------------------------------------g~~a~~S~~g~~~ 229 (471)
T 1p8j_A 217 -------------------------------------------------------------------GNVPWYSEACSST 229 (471)
T ss_dssp -------------------------------------------------------------------SCCCTTCCBCTTC
T ss_pred -------------------------------------------------------------------CCcccccCCCCcc
Confidence 5788999999987
Q ss_pred CCCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047013 519 IDPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTAT 598 (781)
Q Consensus 519 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~ 598 (781)
....+|...+||..|+++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++||+
T Consensus 230 --~~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 295 (471)
T 1p8j_A 230 --LATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSK 295 (471)
T ss_dssp --CEEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred --eEEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCc
Confidence 5555666667778999997642 26899999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccCCCCCCCCCcccCCcccccccCCCCeee
Q 047013 599 TEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVY 638 (781)
Q Consensus 599 ~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~~ 638 (781)
+++.....+.. ..........||||+||+.+|++.+..+
T Consensus 296 ~~~~~~~~~~~-n~~g~~~~~~~G~G~vda~~Av~~a~~~ 334 (471)
T 1p8j_A 296 PAHLNADDWAT-NGVGRKVSHSYGYGLLDAGAMVALAQNW 334 (471)
T ss_dssp CTTCCCSCCEE-CTTSCEEBTTTBTCBCCHHHHHHHHHTC
T ss_pred cCCCCCCCcee-cCCCcccCCCCCCEEEcHhHHHHHhhcc
Confidence 87643322221 1111224568999999999999865433
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=394.06 Aligned_cols=230 Identities=30% Similarity=0.414 Sum_probs=197.2
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
...|... +|+||+|||||||||++||+|.++ +...+.|..
T Consensus 23 ~~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------- 62 (279)
T 3f7m_A 23 AYAYDTS-AGAGACVYVIDTGVEDTHPDFEGR--------------------------AKQIKSYAS------------- 62 (279)
T ss_dssp SEEECTT-TTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEECSS-------------
T ss_pred ceeecCC-CCCCCEEEEEcCCCCCCChhhccc--------------------------cccccCCCC-------------
Confidence 3567666 999999999999999999999753 333333432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...|..||||||||||+|+. .||||+|+|+.+|+++..+ .++.+.++++|+|++++
T Consensus 63 -------~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 118 (279)
T 3f7m_A 63 -------TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSG---SGSLSNIIAGMDFVASD 118 (279)
T ss_dssp -------SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHHHhc
Confidence 22378999999999999873 7999999999999998776 57889999999999987
Q ss_pred C-------CcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc-cCCCCceEEecccCCceeeeeeE
Q 047013 293 G-------VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV-DNVPPWVLTVGASTTDREFSSYV 364 (781)
Q Consensus 293 g-------~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgA~~~d~~~~~~~ 364 (781)
+ ++|||||||.. ....+..++..+.++|++||+||||+|...... +...+++|+|||++.+
T Consensus 119 ~~~~~~~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------- 187 (279)
T 3f7m_A 119 RQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN------- 187 (279)
T ss_dssp GGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------
T ss_pred cccccCCCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC-------
Confidence 6 89999999975 456788888999999999999999999765433 5577999999985422
Q ss_pred EeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCc
Q 047013 365 TLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGA 444 (781)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga 444 (781)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCc
Q 047013 445 VGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAIL 524 (781)
Q Consensus 445 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 524 (781)
+.++.||++||.+
T Consensus 188 -------------------------------------------------------------~~~~~~S~~g~~~------ 200 (279)
T 3f7m_A 188 -------------------------------------------------------------DVRSTFSNYGRVV------ 200 (279)
T ss_dssp -------------------------------------------------------------SBBCTTCCBSTTC------
T ss_pred -------------------------------------------------------------CCCCCCCCCCCCC------
Confidence 5788999999976
Q ss_pred cCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 525 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
||+|||++|+++++.+ .|..++|||||||||||++|||+|++|. ++++||++|++||++.
T Consensus 201 --di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~ 260 (279)
T 3f7m_A 201 --DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKN 260 (279)
T ss_dssp --CEEEECSSEEEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEES
T ss_pred --eEEECCCCeEeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccc
Confidence 9999999999998864 7899999999999999999999999999 9999999999999875
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=415.94 Aligned_cols=243 Identities=20% Similarity=0.253 Sum_probs=189.2
Q ss_pred cccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCc
Q 047013 134 SAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFL 213 (781)
Q Consensus 134 ~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (781)
..|..+++|+||+|+|||||||++||+|.++- ......+... .++.
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------------------------~~~~~~~v~~---~dg~------ 62 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------------------------MVTDFENVPE---EDGT------ 62 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE-------------------------EEEEEECCCC---CC--------
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc-------------------------cccCcccccC---CCCc------
Confidence 47888999999999999999999999998640 1111111100 0000
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc-
Q 047013 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD- 292 (781)
Q Consensus 214 ~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~- 292 (781)
+ ......|..||||||||||+|+. .||||+|+|+.+|+++..+ .++.+++++||+|+++.
T Consensus 63 -~-f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G---~g~~s~ii~ai~~a~~~~ 123 (546)
T 2qtw_B 63 -R-FHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG---KGTVSGTLIGLEFIRKSQ 123 (546)
T ss_dssp -------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHHH
T ss_pred -c-ccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHhh
Confidence 0 00245688999999999999874 6999999999999998776 47789999999999974
Q ss_pred -----CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC-ccCCCCceEEecccCCceeeeeeEEe
Q 047013 293 -----GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT-VDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 293 -----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
+++|||||||+. +...+..++.++.++|++||+||||+|..... ++...+++|+|||++.+.
T Consensus 124 ~~~~~g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g-------- 191 (546)
T 2qtw_B 124 LVQPVGPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD-------- 191 (546)
T ss_dssp HHSCCSCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS--------
T ss_pred hhccCCCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC--------
Confidence 899999999975 34567888889999999999999999976533 356779999999965431
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccc----cccCCCCCCCCCC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTS----FFSARGPNLIDPA 522 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a----~fSs~Gp~~~~~~ 522 (781)
.++ .||++|+.+
T Consensus 192 ------------------------------------------------------------~~a~~s~~fSn~G~~v---- 207 (546)
T 2qtw_B 192 ------------------------------------------------------------QPVTLGTLGTNFGRCV---- 207 (546)
T ss_dssp ------------------------------------------------------------CBCEETTEECCBSTTC----
T ss_pred ------------------------------------------------------------CcccccCCcCCCCCcc----
Confidence 122 289999855
Q ss_pred CccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 047013 523 ILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTE 600 (781)
Q Consensus 523 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~ 600 (781)
||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.
T Consensus 208 ----DI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 208 ----DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp ----CEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred ----eEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 99999999999987642 2799999999999999999999999999999999999999999764
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-46 Score=422.10 Aligned_cols=284 Identities=18% Similarity=0.214 Sum_probs=215.4
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++- ...+.++|.++ ..+
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~------~~~--- 90 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF------------------------CAEGSWDFNDN------TNL--- 90 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB------------------------CGGGCEETTTT------BSC---
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc------------------------cccCcccCCCC------CCC---
Confidence 689999999999999999999999999998641 00122334322 000
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
..+..|.+||||||||||||...++. .+.||||+|+|+.+|+++.. ++..++++||+|++++
T Consensus 91 -----~~p~~d~~gHGT~vAGiiaa~~~n~~--------~~~GvAp~a~i~~~rv~~~~-----~~~~~~~~ai~~a~~~ 152 (503)
T 2id4_A 91 -----PKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSGD-----ITTEDEAASLIYGLDV 152 (503)
T ss_dssp -----CCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTSC-----CCHHHHHHHTTTTTTT
T ss_pred -----CCCCCCCCChHHHHHHHHHhccCCCC--------CcEEECCCCEEEEEEeeCCC-----CChHHHHHHHHhHhhc
Confidence 11335788999999999999753322 24799999999999999742 6788999999999999
Q ss_pred CCcEEEecCCCCCCC-C---CCChHHHHHHHHH-----hCCCEEEEecCCCCCCCC--CccC--CCCceEEecccCCcee
Q 047013 293 GVDIISASLGSKPKE-H---FESSVAVGSFHAM-----MHGILVVASAGNSGPAEK--TVDN--VPPWVLTVGASTTDRE 359 (781)
Q Consensus 293 g~dVIN~SlG~~~~~-~---~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~~--~~p~vitVgA~~~d~~ 359 (781)
+ +|||||||..... . ....+..++.++. .+|++||+||||+|.... .++. ..+++|+|||++.+
T Consensus 153 ~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~-- 229 (503)
T 2id4_A 153 N-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK-- 229 (503)
T ss_dssp C-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT--
T ss_pred C-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC--
Confidence 8 9999999986321 1 1233566666665 479999999999996432 2222 45789999985432
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
+.++.||++||..
T Consensus 230 ------------------------------------------------------------------~~~a~~S~~g~~~- 242 (503)
T 2id4_A 230 ------------------------------------------------------------------DLHPPYSEGCSAV- 242 (503)
T ss_dssp ------------------------------------------------------------------SCCCTTCCCCTTE-
T ss_pred ------------------------------------------------------------------CCcCCcCCCCCcc-
Confidence 5778999999988
Q ss_pred CCCCccCeeee----CCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 047013 520 DPAILKPDVIA----PGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMT 595 (781)
Q Consensus 520 ~~~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~ 595 (781)
|++| ||..|+++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++
T Consensus 243 -------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~ 303 (503)
T 2id4_A 243 -------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSIL 303 (503)
T ss_dssp -------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred -------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 8887 899999995432 27999999999999999999999999999999999999999
Q ss_pred ccccCCCC-CCcccccCCCCCCCCCcccCCcccccccCCCCee
Q 047013 596 TATTEDSS-KHPILDQVTGQKATPFAYGAGHVNPNSALDPGLV 637 (781)
Q Consensus 596 TA~~~~~~-g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~l~ 637 (781)
||++++.. ...+.. ..........||+|+||+.+|++.+.-
T Consensus 304 tA~~~~~~~~~~~~~-~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 304 SAVGLEKNADGDWRD-SAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp HCBCCTTCGGGCCEE-CSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred ccccCCCCcCCCcee-cCCCCccCcccCCcEecHHHHHHHHhc
Confidence 99987543 111111 111122356899999999999996543
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=416.15 Aligned_cols=322 Identities=18% Similarity=0.173 Sum_probs=203.2
Q ss_pred CccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCC
Q 047013 132 PDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSS 211 (781)
Q Consensus 132 ~~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (781)
+..+|..+++|+||+|||||||||++||||.++ ...+.++|.++. .
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------------------------~~~~~~~~~~~~------~--- 104 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------------------------VRPGSKNVVTGS------D--- 104 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------------------------BCSCCBCTTTSS------S---
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------------------------cccCcceeecCC------C---
Confidence 368999999999999999999999999999863 011222232221 0
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHH-HHhh
Q 047013 212 FLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGF-DVAI 290 (781)
Q Consensus 212 ~~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai-~~a~ 290 (781)
+..+..|.+||||||||||||.. ++ .| +.||||+|+|+.+|++++.+ .+...+++.|+ +++.
T Consensus 105 -----dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~---~~~~~~~~~a~~~~~~ 167 (600)
T 3hjr_A 105 -----DPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNS---QQLQKDWLYALGDSNA 167 (600)
T ss_dssp -----CCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTC---CCCHHHHHHHTTSSHH
T ss_pred -----CCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCC---CccHHHHHHHhhhhhh
Confidence 01234467899999999999863 11 22 48999999999999998776 46677777776 5677
Q ss_pred hcCCcEEEecCCCCCC-CCCCCh-----HHHHHHHH--HhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeee
Q 047013 291 HDGVDIISASLGSKPK-EHFESS-----VAVGSFHA--MMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSS 362 (781)
Q Consensus 291 ~~g~dVIN~SlG~~~~-~~~~~~-----~~~a~~~a--~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~ 362 (781)
.++++|||+|||.... ....+. +..++..+ ..+|+++|+||||.+....... +.+.+.
T Consensus 168 ~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~-------- 233 (600)
T 3hjr_A 168 SRDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRT-------- 233 (600)
T ss_dssp HHTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEE--------
T ss_pred hcCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccC--------
Confidence 8899999999997621 111122 12222222 2689999999999763210000 000000
Q ss_pred eEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhc
Q 047013 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA 442 (781)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 442 (781)
+++ .......|..... ....
T Consensus 234 ----g~~--------------------------------~~~~~~~~~~d~~--~~~~---------------------- 253 (600)
T 3hjr_A 234 ----GNG--------------------------------PKLPFENSNLDPS--NSNF---------------------- 253 (600)
T ss_dssp ----SSC--------------------------------CCCCSSBTTSSGG--GGSS----------------------
T ss_pred ----CCC--------------------------------CCCCcccccccCc--cccC----------------------
Confidence 000 0000000100000 0000
Q ss_pred CceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCC
Q 047013 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPA 522 (781)
Q Consensus 443 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 522 (781)
...++......+.++.||++|+..
T Consensus 254 ----------------------------------------------------~~IsVgA~~~~g~~a~yS~~G~~v---- 277 (600)
T 3hjr_A 254 ----------------------------------------------------WNLVVSALNADGVRSSYSSVGSNI---- 277 (600)
T ss_dssp ----------------------------------------------------SEEEEEEECTTSSBCTTCCBCTTC----
T ss_pred ----------------------------------------------------cceEEeeecCCCCEeecccCCcce----
Confidence 001122233357889999999988
Q ss_pred CccCeeeeCCCcE-------Eee-ecCCCCCC-------------CCCCCCCcccceeeccccchhhHHHHHHHHHHHhC
Q 047013 523 ILKPDVIAPGVDI-------IAA-FTNEYGPS-------------HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH 581 (781)
Q Consensus 523 ~~KPDI~APG~~I-------~sa-~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (781)
+++|||..+ ..+ .++..... ..........|..++|||||||||||++|||+|++
T Consensus 278 ----~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~ 353 (600)
T 3hjr_A 278 ----FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAY 353 (600)
T ss_dssp ----CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHS
T ss_pred ----eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHC
Confidence 999999763 222 22110000 00111233468899999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccccCCCCCCccccc-------------------CCCCCCCCCcccCCcccccccCCCCeee
Q 047013 582 PDWSPAAIKSAIMTTATTEDSSKHPILDQ-------------------VTGQKATPFAYGAGHVNPNSALDPGLVY 638 (781)
Q Consensus 582 p~lt~~~ik~~L~~TA~~~~~~g~~~~~~-------------------~~~~~~~~~~~G~G~in~~~Av~~~l~~ 638 (781)
|+|+++|||++|++||++++....|.... ..........||+|+||+.+||+.+..+
T Consensus 354 P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 354 PDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH 429 (600)
T ss_dssp TTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence 99999999999999999998766553210 1111223457999999999999855433
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-25 Score=253.05 Aligned_cols=97 Identities=25% Similarity=0.375 Sum_probs=76.6
Q ss_pred cccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh---cCCcEEEecCCCCCCCC---CCChHHHHHHHHHhCCC
Q 047013 252 TAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH---DGVDIISASLGSKPKEH---FESSVAVGSFHAMMHGI 325 (781)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gi 325 (781)
.+.||||+|+|+.|++. ...+.++++|+||++ ++++|||||||...... +...+..++.+|..+||
T Consensus 273 ~~~gvAp~a~i~~~~~~--------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 344 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP--------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGV 344 (552)
T ss_dssp HHHHHCTTSEEEEEECC--------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCeEEEEEcC--------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCe
Confidence 45899999999999973 245689999999998 78999999999873211 12346667778889999
Q ss_pred EEEEecCCCCCCC--------CCccCCCCceEEecccCC
Q 047013 326 LVVASAGNSGPAE--------KTVDNVPPWVLTVGASTT 356 (781)
Q Consensus 326 ~vV~AAGN~g~~~--------~~~~~~~p~vitVgA~~~ 356 (781)
+||+||||+|... ..+++..|+|++||+++.
T Consensus 345 ~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 345 TVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999999653 234457799999999754
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-22 Score=214.08 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=78.7
Q ss_pred cccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-cCCcEEEecCCCCCC----CCCCChHHHHHHHHHhCCCEEE
Q 047013 254 KGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH-DGVDIISASLGSKPK----EHFESSVAVGSFHAMMHGILVV 328 (781)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV 328 (781)
..+||+++++.|++.+... +..++++++|+||++ ++++|||||||.... ..+...+..++.+|..+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~~----~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv 165 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA----SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 165 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS----STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCCCCcEEEEEeCCCCC----cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 4579999999999986543 667899999999997 899999999998621 1122456677778889999999
Q ss_pred EecCCCCCCCC-------------CccCCCCceEEecccCCc
Q 047013 329 ASAGNSGPAEK-------------TVDNVPPWVLTVGASTTD 357 (781)
Q Consensus 329 ~AAGN~g~~~~-------------~~~~~~p~vitVgA~~~d 357 (781)
+||||+|...+ .+++..|+|++||+++..
T Consensus 166 ~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 166 VSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp EECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred EEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99999997543 334567999999997643
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-10 Score=128.96 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=62.3
Q ss_pred ccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh--hcCCcEEEecCCCCCCCC---CCChHHHHHHHHHhCCCEE
Q 047013 253 AKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI--HDGVDIISASLGSKPKEH---FESSVAVGSFHAMMHGILV 327 (781)
Q Consensus 253 ~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~v 327 (781)
+.+++++..++.|...+.. .....++..+++.. .+-++|||+|||...... +...+...+.++..+||.|
T Consensus 261 a~a~~~~i~~~~~~~~g~~-----~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv 335 (544)
T 3edy_A 261 LMSAGANISTWVYSSPGRH-----EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTL 335 (544)
T ss_dssp HHHHSTTSEEEEECCCSCC-----TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HhccCCCceEEEEecCCcc-----cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 3455566666555432211 12234444444433 346899999999873211 1233555666788999999
Q ss_pred EEecCCCCCCC----------CCccCCCCceEEecccCC
Q 047013 328 VASAGNSGPAE----------KTVDNVPPWVLTVGASTT 356 (781)
Q Consensus 328 V~AAGN~g~~~----------~~~~~~~p~vitVgA~~~ 356 (781)
++|+||+|... ..+++..|||++||+++.
T Consensus 336 ~~ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 336 LFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp EEECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred EEecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99999999642 134557799999999753
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=97.48 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=66.7
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEE
Q 047013 25 TAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVS 104 (781)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~ 104 (781)
...++|||+||+.... .....|.+|+.+++.+ +....++.+.|++.|+||+++++++++++|+++|+|.+
T Consensus 35 ~ip~~YIV~lk~~~~~---------~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~ 104 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDY 104 (114)
T ss_dssp EEEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEE
T ss_pred CCCCcEEEEECCCCCH---------HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccE
Confidence 3457899999987653 4456888999887664 33467899999999999999999999999999999999
Q ss_pred EEEcceecc
Q 047013 105 VFLEEGIDL 113 (781)
Q Consensus 105 V~~~~~~~~ 113 (781)
|++++.++.
T Consensus 105 VE~D~~v~~ 113 (114)
T 2w2n_P 105 IEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEE
T ss_pred EEeCceEec
Confidence 999998764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=83.68 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=57.1
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEE
Q 047013 25 TAKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVS 104 (781)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~ 104 (781)
...++|||.||+.... .. .+..+++ ....++.++|.+ |+||+++++++++++|+++|+|.+
T Consensus 6 ~i~~~YIV~~k~~~~~--------~~---~~~~~~~-------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~ 66 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS--------CA---KKEDVIS-------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAY 66 (80)
T ss_dssp --CCEEEEEECTTCCS--------HH---HHHHHHH-------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEE
T ss_pred cCCCCEEEEECCCCCh--------HH---HHHHHHH-------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccE
Confidence 3468999999998764 11 1222222 123689999998 999999999999999999999999
Q ss_pred EEEcceecccccC
Q 047013 105 VFLEEGIDLHTTR 117 (781)
Q Consensus 105 V~~~~~~~~~~~~ 117 (781)
||++..++++++.
T Consensus 67 Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 67 VEEDKLYRALSAT 79 (80)
T ss_dssp EEECCEEEECCC-
T ss_pred EEeCcEEEEeeec
Confidence 9999999987653
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=87.92 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEEE
Q 047013 26 AKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSV 105 (781)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~V 105 (781)
..++|||+||+.... .....+.+++..+... +....++.+.|++.|+||+++++++++++|+++|+|.+|
T Consensus 46 Ip~~YIV~~K~~~~~---------~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~V 115 (124)
T 2qtw_A 46 LPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115 (124)
T ss_dssp EEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCCEEEEECCCCCH---------HHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEE
Confidence 457899999998753 3344555555553221 113468999999999999999999999999999999999
Q ss_pred EEcceecc
Q 047013 106 FLEEGIDL 113 (781)
Q Consensus 106 ~~~~~~~~ 113 (781)
+++..++.
T Consensus 116 E~D~~v~a 123 (124)
T 2qtw_A 116 EEDSSVFA 123 (124)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=78.28 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEe-ccceeeEEEEeCHHHHHHHhcC--CCeEE
Q 047013 28 KPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSY-GRYINGFGAVLEEEHAKQIARH--PEVVS 104 (781)
Q Consensus 28 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y-~~~~~g~s~~l~~~~i~~L~~~--~~V~~ 104 (781)
+.|||.||+.... ...+.+.+++... ..++.+.| ...|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~~---------~~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVSE---------DKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCCH---------HHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCCH---------HHHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 6899999998763 4556666776654 24688999 4799999999999999999999 88999
Q ss_pred EEEcceecc
Q 047013 105 VFLEEGIDL 113 (781)
Q Consensus 105 V~~~~~~~~ 113 (781)
||+++.++.
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999988764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=87.42 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=73.9
Q ss_pred ccCCCCCCCCCCCC-------ceeEEEEEecCC--cchHHHHHHHhcCceEEEEecCCCCcccc--c--cccccccEEEE
Q 047013 405 DATQCKNGTIDPEK-------VKGKILICYDAK--IGDAKGQRAAQAGAVGMILANSREDQNIS--L--NMVHFLPTAYV 471 (781)
Q Consensus 405 ~~~~c~~~~~~~~~-------~~gkivl~~~g~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~--~~~~~~p~~~i 471 (781)
....|.+..+.... .+|||+|++||. +|.+|..+|+++||.++|+||+...+... . .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 46789887654322 579999999997 99999999999999999999985322211 1 12247999999
Q ss_pred ehhhHHHHHHHHhcCCCcEEEEecce
Q 047013 472 NYKDGQSVYAYIYNTENPVASMTNSI 497 (781)
Q Consensus 472 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 497 (781)
+..+|+.|++++.++...+++|....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999998888886553
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00025 Score=55.99 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=41.0
Q ss_pred hhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEEEEEcceecc
Q 047013 67 EEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVFLEEGIDL 113 (781)
Q Consensus 67 ~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~V~~~~~~~~ 113 (781)
...+.++.++|. .+++++++|+++.++.|+++|+|++|++|...+.
T Consensus 19 ~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 19 LGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp GGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred HHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 344678999998 9999999999999999999999999999987653
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.008 Score=66.23 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCCCCCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcccc-c--cccccccEEEEehhhHHHHHHHHh
Q 047013 412 GTIDPEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNIS-L--NMVHFLPTAYVNYKDGQSVYAYIY 484 (781)
Q Consensus 412 ~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~--~~~~~~p~~~i~~~~g~~l~~~~~ 484 (781)
.++...+++|||+|+.+|. .|..|..+|+++||.|+|++++..+.... . .....+|+..|+.++++.|++++.
T Consensus 106 ~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 106 ADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3444558999999999999 89999999999999999999986432111 1 124579999999999999999984
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.031 Score=49.95 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=57.3
Q ss_pred EEEecCC-CCcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEE
Q 047013 685 IAVPNLV-NGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGEL 763 (781)
Q Consensus 685 ~~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i 763 (781)
+.++.+. +.+.+.+++|+|+|..+..|++....+ ++++|+.-++ .+|++.+++|+|.+. ....+++.+
T Consensus 32 l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~------~~g~~~~~l 100 (122)
T 2ys4_A 32 LNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQ------SVGDHSGRL 100 (122)
T ss_dssp ECCCSEESSSCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCS------SSBCCCCBC
T ss_pred eecCCeecCCeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcC------CCccEEEEE
Confidence 4444333 478899999999999999998876543 7778999999 799999999999982 333346665
Q ss_pred EEE-cCcceEEEE
Q 047013 764 VWS-DGFHNVKST 775 (781)
Q Consensus 764 ~~~-~~~~~v~~P 775 (781)
.+. ++...+.++
T Consensus 101 ~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 101 IVCYDTGEKVFVS 113 (122)
T ss_dssp EEEESSSCEECCE
T ss_pred EEEECCCCEEEEE
Confidence 553 444444443
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.037 Score=61.22 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCceeEEEEEecCC-c---------chHH----HHHHHhcCceEEEEecCCCCccc--------cccccccccEEEEeh
Q 047013 416 PEKVKGKILICYDAK-I---------GDAK----GQRAAQAGAVGMILANSREDQNI--------SLNMVHFLPTAYVNY 473 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~---------~~~~----~~~~~~~Ga~g~i~~~~~~~~~~--------~~~~~~~~p~~~i~~ 473 (781)
..+++|||||+.++. . +..| ..+|.++||.|+|++++...... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 468999999999875 2 2333 45799999999999997543211 111235799999999
Q ss_pred hhHHHHHHHHhcCCCcEEEEecc
Q 047013 474 KDGQSVYAYIYNTENPVASMTNS 496 (781)
Q Consensus 474 ~~g~~l~~~~~~~~~~~~~i~~~ 496 (781)
++++.|++.+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998877666666543
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.93 E-value=0.021 Score=66.58 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=55.2
Q ss_pred CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCC----c------------------cc----cccc------
Q 047013 416 PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSRED----Q------------------NI----SLNM------ 462 (781)
Q Consensus 416 ~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~----~------------------~~----~~~~------ 462 (781)
..+++|||+|+++|. .+.+|..+|+++||.|+|+|++... + .- ..++
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 457999999999999 9999999999999999999986210 0 00 0011
Q ss_pred ----------------cccccEEEEehhhHHHHHHHHhc
Q 047013 463 ----------------VHFLPTAYVNYKDGQSVYAYIYN 485 (781)
Q Consensus 463 ----------------~~~~p~~~i~~~~g~~l~~~~~~ 485 (781)
...||+..|+.++++.|++.+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 13689999999999999987754
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.037 Score=63.76 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=53.8
Q ss_pred CCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCcc------------------cc-cc---------------
Q 047013 417 EKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQN------------------IS-LN--------------- 461 (781)
Q Consensus 417 ~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~------------------~~-~~--------------- 461 (781)
.+++|||+|+.+|. .+.+|..+|+++||.|+|+|++..... .. ++
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 47999999999999 999999999999999999999753210 00 00
Q ss_pred ccccccEEEEehhhHHHHHHHHh
Q 047013 462 MVHFLPTAYVNYKDGQSVYAYIY 484 (781)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~ 484 (781)
....||+..|+.++++.|++.+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 01258999999999999987654
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.53 E-value=1.4 Score=39.97 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=65.3
Q ss_pred eEEEecCC-CCcEEEEEEEEecCCCCeeEEEEEecC----CceEEEEeecEEEEcCCCcEEEEEEEEEeecC--CCCCCC
Q 047013 684 SIAVPNLV-NGSMTVSRRLKNVGTPTCTYKAQITEI----VGVSAVVEPITLNFTKYGEELTFKITFSVKGN--DKPVAT 756 (781)
Q Consensus 684 s~~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~~----~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~--~~~~~~ 756 (781)
.|.+++.. ....+.+++|+|+|..+.+|++..... ..--++++|..-++ .+|++.+++|++.+++. .....+
T Consensus 33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g 111 (140)
T 3qbt_B 33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSG 111 (140)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHS
T ss_pred eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccc
Confidence 44555444 467788899999999999999985421 12236778999899 89999999999997420 000011
Q ss_pred -ceEEEEEEEE-cCcceEEEEEEEEe
Q 047013 757 -DYVFGELVWS-DGFHNVKSTIAVKL 780 (781)
Q Consensus 757 -~~~~G~i~~~-~~~~~v~~P~~~~~ 780 (781)
.-++--|++. .++....||+...+
T Consensus 112 ~~~l~diLvL~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 112 EDKIEDILVLHLDRGKDYFLTISGNY 137 (140)
T ss_dssp SSCSCEEEEEEETTSCEEEEEEEEEE
T ss_pred hhhhheeEEEEeecCCcEEEEEeccc
Confidence 2345667764 56788888886544
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.26 Score=42.88 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCCeEEEecCC-CCcEEEEEEEEecCCCCeeEEEEEec-CCceEEEEeecEEEEcCCCcEEEEEEEEEe
Q 047013 680 FNYPSIAVPNLV-NGSMTVSRRLKNVGTPTCTYKAQITE-IVGVSAVVEPITLNFTKYGEELTFKITFSV 747 (781)
Q Consensus 680 ln~ps~~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~-~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~ 747 (781)
++...+.++... +...+.+++++|.|+.+..|++.... ..+...+++|..-.+ .+|++.+++|+|.+
T Consensus 12 ~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 12 FNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSS 80 (112)
T ss_dssp ESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECC
T ss_pred ECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEEC
Confidence 333455555444 35678889999999999999984321 123447778999888 78999999999998
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=0.26 Score=54.34 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.2
Q ss_pred eeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCC
Q 047013 498 TEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNE 542 (781)
Q Consensus 498 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (781)
++...+..+.++.||++||.+ ||+|||++|+++++.+
T Consensus 176 ~VgA~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 176 SVAAVDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp EEEEECTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred EEEEECCCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 344455568899999999876 9999999999998753
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.98 E-value=0.43 Score=58.68 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=23.1
Q ss_pred CCCCCceEEEEecCCCCcCCCCccC
Q 047013 139 ARFGEDVIIGNLDSGVWPESQSFTD 163 (781)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~Hp~f~~ 163 (781)
.+.|+||+|||+|||||+.+|-|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 6799999999999999999999963
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=83.77 E-value=4 Score=35.74 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=44.0
Q ss_pred cEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEee
Q 047013 694 SMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVK 748 (781)
Q Consensus 694 ~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~ 748 (781)
.-..++.|.|....+.+|.++++..+++++.- +..+++ ++||..++.|.+.+.
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g-~~~i~v-~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYG-KQTIQV-EPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEES-CCEEEE-CTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeC-CCcEEE-CCCCEEEEEEEEEEC
Confidence 56788999999999999999999876765542 456888 899999999999984
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.66 E-value=6.9 Score=38.30 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=50.5
Q ss_pred EEEecCC-CCcEEEEEEEEecCCCCeeEEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCceEEEEE
Q 047013 685 IAVPNLV-NGSMTVSRRLKNVGTPTCTYKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDYVFGEL 763 (781)
Q Consensus 685 ~~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~i 763 (781)
+.++... +...+.+++++|.|+.+.+++.... |.-.++..+|. ++ .+|++.+++|++.. .....-+...+.|
T Consensus 10 idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~--~I-~PG~~g~I~vt~~~---~~~~~~G~~~~~i 82 (220)
T 2qsv_A 10 LLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAF--RL-QAREPRELNLSLAV---PRNMPPGMKDEPL 82 (220)
T ss_dssp EECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEE--EE-CSSSCEEEEEEECC---CTTCCSEEEEEEE
T ss_pred eEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcc--ee-CCCCceEEEEEEcc---hhcccCCceeeEE
Confidence 3344443 3567789999999999998887543 55555444444 44 78999999999988 3443345567777
Q ss_pred EEE
Q 047013 764 VWS 766 (781)
Q Consensus 764 ~~~ 766 (781)
++.
T Consensus 83 ~v~ 85 (220)
T 2qsv_A 83 VLE 85 (220)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=82.58 E-value=10 Score=40.27 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=62.6
Q ss_pred CeEEEecCC-CCcEEEEEEEEecCCCCeeEEEEEecCCceE----EEEeecEEEEcCCCcEEEEEEEEEeecCC-CCCC-
Q 047013 683 PSIAVPNLV-NGSMTVSRRLKNVGTPTCTYKAQITEIVGVS----AVVEPITLNFTKYGEELTFKITFSVKGND-KPVA- 755 (781)
Q Consensus 683 ps~~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~~~~~~----v~~~p~~~~~~~~g~~~~~~vt~~~~~~~-~~~~- 755 (781)
..|.+++.. ....+-++||+|+|..+.+|++......... ++++|..-++ .+|++++++|++.+++.. ...+
T Consensus 35 ~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~ 113 (366)
T 3qis_A 35 REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNS 113 (366)
T ss_dssp SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHH
T ss_pred CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhc
Confidence 355555554 4678888999999999999999764332222 7788999888 899999999999984200 0000
Q ss_pred -CceEEEEEEEE-cCcceEEEEEEEE
Q 047013 756 -TDYVFGELVWS-DGFHNVKSTIAVK 779 (781)
Q Consensus 756 -~~~~~G~i~~~-~~~~~v~~P~~~~ 779 (781)
..-++--|++. +++....+|+-..
T Consensus 114 g~~~l~diLvL~ve~G~d~FI~v~~~ 139 (366)
T 3qis_A 114 GEDKIEDILVLHLDRGKDYFLTISGN 139 (366)
T ss_dssp TSSCSCEEEEEEETTSCEEEEEEEEE
T ss_pred CccccceEEEEEEeCCCcEEEEeccc
Confidence 12234455553 4455556665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 781 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-42 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-15 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-14 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-14 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 7e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 8e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-07 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-11 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 8e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 5e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 8e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.002 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 158 bits (399), Expect = 2e-42
Identities = 76/438 (17%), Positives = 148/438 (33%), Gaps = 57/438 (13%)
Query: 211 SFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWK 270
+ N ++N HGTH T G G P + V
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVF 99
Query: 271 PNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVAS 330
+++ + A G ++++ SLG ++ +G+L++A+
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALNTHYNNGVLLIAA 156
Query: 331 AGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFYPL 390
AGN+G + + V++V A ++ + +++ +++ I G A ++T L
Sbjct: 157 AGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRL 216
Query: 391 IAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILA 450
+ SN G + G + A A G +
Sbjct: 217 ADITIGGQSYFSN-----------------GVVPHNRLTPSGTSYAPAPINASATGALA- 258
Query: 451 NSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSF 510
++N F + N + + + N + + ++ + +
Sbjct: 259 ------ECTVNGTSF---SCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVY 309
Query: 511 FSARGPNLIDPAIL--KPDVIAPGVDIIAAFT----NEYGPSHEEFDPRRVPYNVMSGTS 564
++ P L +P ++ D+ P V + A + G S + Y +GTS
Sbjct: 310 SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTS 369
Query: 565 MACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAG 624
MA PHV+G+A LV + HP+ S + +++A+ TA G G
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADD------------LSVAGRDNQTGYG 417
Query: 625 HVNPNSALDPGLVYDLGP 642
+N +A GP
Sbjct: 418 MINAVAAKAYLDESCTGP 435
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 77.4 bits (189), Expect = 3e-15
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 526 PDVIAPGVDIIAAFTNEYGPSHEEFDPRRVP-----YNVMSGTSMACPHVAGIAGLVKTL 580
V APGV I++ E +E + Y+ GTSMA PHV G+ ++
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 581 HPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPGLVYDL 640
P+ P I+ + TA G G V ++AL L
Sbjct: 398 FPNAKPWQIRKLLENTAFD------------FNGNGWDHDTGYGLVKLDAALQGPLPTQG 445
Query: 641 GPGDY 645
G ++
Sbjct: 446 GVEEF 450
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 50.4 bits (119), Expect = 6e-07
Identities = 31/229 (13%), Positives = 58/229 (25%), Gaps = 53/229 (23%)
Query: 132 PDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKL 191
W +A G ++I+ +D+GV + + + T+
Sbjct: 144 TQQLWEEAS-GTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTD--------- 193
Query: 192 IGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYG 251
S GTH T
Sbjct: 194 -----------------------------SSYGGSAGTHVAGTIAAK---------KDGK 215
Query: 252 TAKGGSPKARLAAYKVCWKP---NGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEH 308
G +P A++ + P G + AG A G +++ S G +
Sbjct: 216 GIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSY 275
Query: 309 FESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTD 357
+ + +VV++ N+ + P V+ V A
Sbjct: 276 TMKEAFDYAMEHGVV--MVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 71.4 bits (173), Expect = 6e-14
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 18/167 (10%)
Query: 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLID 520
++ Y G Y VA++ N + +S
Sbjct: 160 GVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYV 219
Query: 521 PAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL 580
++ APG + + + N YN +SGTSMA PHV+G+A +
Sbjct: 220 IQEGDIEISAPGSSVYSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAE 266
Query: 581 HPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVN 627
+P S ++S + A + D +A G G
Sbjct: 267 NPSLSNTQLRSNLQERAKSVDIKGGY-----GAAIGDDYASGFGFAR 308
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 70.7 bits (172), Expect = 6e-14
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 36/162 (22%)
Query: 471 VNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIA 530
V G S + NT A + I + + FS+ G + +V+A
Sbjct: 148 VVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMA 199
Query: 531 PGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIK 590
PG + + + Y ++GTSMA PHVAG A L+ + HP+ S + ++
Sbjct: 200 PGAGVYSTYPTNT-------------YATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 591 SAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSAL 632
+ + +TAT SS F YG G +N +A
Sbjct: 247 NRLSSTATYLGSS---------------FYYGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 51/302 (16%), Positives = 101/302 (33%), Gaps = 65/302 (21%)
Query: 128 NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITC 187
I D + G +V + LD+G+ G
Sbjct: 9 PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG---------------------- 46
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
+SF+ E T + +G
Sbjct: 47 ---------------------GASFVAGEAYNTDGNGHGTHVA-----------GTVAAL 74
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKE 307
G +P L A KV N + + + I++G + A +G+D+I+ S
Sbjct: 75 DNTTGVLGVAPSVSLYAVKVL---NSSGSGSYSGIVSGIEWATTNGMDVIN---MSLGGA 128
Query: 308 HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPW----VLTVGASTTDREFSSY 363
+++ +A G++VVA+AGNSG + T P V+ VGA ++ +S+
Sbjct: 129 SGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASF 188
Query: 364 VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDAT-QCKNGTIDPEKVKGK 422
++G ++ + + + Y + G + +V+ A K+ + +V+ +
Sbjct: 189 SSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNR 248
Query: 423 IL 424
+
Sbjct: 249 LS 250
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 67.3 bits (163), Expect = 7e-13
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 36/142 (25%)
Query: 491 ASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSHEEF 550
A N++ + + FS G D++APGV + +
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGV-------------NVQS 201
Query: 551 DPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQ 610
Y ++GTSMA PHVAG A LVK +P WS I++ + TAT+ S+
Sbjct: 202 TYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL----- 256
Query: 611 VTGQKATPFAYGAGHVNPNSAL 632
YG+G VN +A
Sbjct: 257 ----------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 46.1 bits (108), Expect = 8e-06
Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 258 PKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFESSVAVGS 317
P A L A KV ++ I G + A ++G+ + + SL +++
Sbjct: 84 PSAELYAVKVLGASGSGSVS---SIAQGLEWAGNNGMHVANLSL---GSPSPSATLEQAV 137
Query: 318 FHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASI 377
A G+LVVA++GNSG + + VGA+ + +S+ G + I +
Sbjct: 138 NSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV 197
Query: 378 AEKGSLTQDFYPLIAGEAAKVANVSNEDA-TQCKNGTIDPEKVKGKIL 424
+ + Y + G + +V+ A + KN + +++ +
Sbjct: 198 NVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLK 245
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 66.5 bits (161), Expect = 2e-12
Identities = 42/164 (25%), Positives = 60/164 (36%), Gaps = 36/164 (21%)
Query: 470 YVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVI 529
V G + +T + I S + FS+ GP L DV+
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPEL--------DVM 199
Query: 530 APGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAI 589
APGV I + Y +GTSMA PHVAG A L+ + HP+W+ +
Sbjct: 200 APGVSIQSTLPGNK-------------YGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 590 KSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633
+S++ T T F YG G +N +A
Sbjct: 247 RSSLENTTTKLGD---------------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 45/276 (16%), Positives = 90/276 (32%), Gaps = 57/276 (20%)
Query: 128 NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITC 187
+QI + ++ G +V + +DSG+
Sbjct: 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------- 42
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
+ + +VP D+N HGTH V+
Sbjct: 43 ------------------KVAGGASMVPSETNPFQDNNSHGTH---------VAGTVAAL 75
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGS-KPK 306
G +P A L A KV + II G + AI + +D+I+ SLG
Sbjct: 76 NNSIGVLGVAPSASLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGS 132
Query: 307 EHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTL 366
+++V ++ + + P V+ VGA + + +S+ ++
Sbjct: 133 AALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
Query: 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVS 402
G ++ + ++ + +L + Y G + +V+
Sbjct: 193 GPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVA 228
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 547 HEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHP 606
D R+ +GTS + P AGI L + + + ++ ++ T+ +
Sbjct: 243 IVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADD 302
Query: 607 ILDQVTGQKATPFAYGAGHVNPNSALD 633
G+K + YG G ++ + +
Sbjct: 303 WATNGVGRKVSHS-YGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 63.7 bits (153), Expect = 2e-11
Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 18/178 (10%)
Query: 461 NMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLID 520
+M G V + N F +
Sbjct: 153 DMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTK 212
Query: 521 PAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTL 580
+KPDV+APG I++A ++ S + Y M GTSMA P VAG ++
Sbjct: 213 DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 581 HPD-----WSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633
P+ +K+A++ A G G G V + +L+
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAAD------------IGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.1 bits (149), Expect = 7e-11
Identities = 17/96 (17%), Positives = 36/96 (37%)
Query: 538 AFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTA 597
+++ G D N GTS A P AG+ L+ +P+ + ++ + +A
Sbjct: 238 TYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 297
Query: 598 TTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633
+ + K YG G ++ + ++
Sbjct: 298 VGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 55.1 bits (131), Expect = 8e-09
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 556 PYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHP 606
+SGTSMA PHVAG+A + TL + +A + I TA D S P
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 54.2 bits (129), Expect = 2e-08
Identities = 49/283 (17%), Positives = 78/283 (27%), Gaps = 67/283 (23%)
Query: 128 NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITC 187
D AW+ + I +D+GV + + D
Sbjct: 16 QNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMD------- 68
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
N HGTH A + + G
Sbjct: 69 ------------------------------------LNNHGTHVAGIAAAETNNATGIAG 92
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKE 307
M R+ A + + +DI A G ++I+ SLG
Sbjct: 93 MAPN--------TRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHT 141
Query: 308 HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLG 367
+ +A G +VVA+AGN+G + V+ VGA +S+ G
Sbjct: 142 TTLENA---VNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYG 198
Query: 368 N----------KMVIKGASIAEKGSLTQDFYPLIAGEAAKVAN 400
+ + S T P +AG AA +A+
Sbjct: 199 TWVDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS 241
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 49.9 bits (118), Expect = 5e-07
Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 27/229 (11%)
Query: 406 ATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHF 465
A T + + G + + +I + +G + I + +++
Sbjct: 77 AGIAAAETNNATGIAG---MAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINL 133
Query: 466 LPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLID-PAIL 524
+ ++ Y +N + V + T+F A N+I A+
Sbjct: 134 SLGCDCHTTTLENAVNYAWNKGSVVVAAAG-------NNGSSTTFEPASYENVIAVGAVD 186
Query: 525 KPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDW 584
+ D +A + Y MSGTSMA PHVAG+A L+
Sbjct: 187 QYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALL--ASQGR 244
Query: 585 SPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633
+ I+ AI TA + + G +N +A+
Sbjct: 245 NNIEIRQAIEQTADKISGTGTY--------------FKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 48.9 bits (115), Expect = 8e-07
Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 22/208 (10%)
Query: 426 CYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYN 485
A I + + +G + + ++ V Q Y +N
Sbjct: 93 APKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWN 152
Query: 486 TENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGP 545
+ V + + + S A + VD+ A ++ Y
Sbjct: 153 KGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGSSIYST 212
Query: 546 SHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKH 605
Y +SGTSMA PHVAG+AGL+ S + I++AI TA
Sbjct: 213 YP------TSTYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA-------- 256
Query: 606 PILDQVTGQKATPFAYGAGHVNPNSALD 633
D+++G T + G VN A+
Sbjct: 257 ---DKISG---TGTYWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 43/291 (14%), Positives = 73/291 (25%), Gaps = 63/291 (21%)
Query: 128 NQIPPDSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITC 187
+I AW+ A G I +D+GV + +G + + N T
Sbjct: 16 QKIQAPQAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTH 74
Query: 188 NRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYG 247
+
Sbjct: 75 CAGIAAA---------------------------------------------------VT 83
Query: 248 MGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKE 307
G +PKA + A +V + G A G +IS SLG
Sbjct: 84 NNSTGIAGTAPKASILAVRVLDNSGSGTWTA---VANGITYAADQGAKVISLSLGGTVGN 140
Query: 308 HFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSY---- 363
+++ + +AGN+ P + V + + FS+Y
Sbjct: 141 SGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWV 200
Query: 364 ---VTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKN 411
+ S S T P +AG A +A+ A+ +
Sbjct: 201 DVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQ-GRSASNIRA 250
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.8 bits (89), Expect = 0.002
Identities = 45/386 (11%), Positives = 94/386 (24%), Gaps = 40/386 (10%)
Query: 251 GTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHFE 310
GTAKG +P Y P AN I G + +++ G
Sbjct: 2 GTAKGHNPTEFPTIYDASSAPTAANTT-VGIITIGGVSQTLQDLQQFTSANGLASVNTQT 60
Query: 311 SSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKM 370
+ +S + +L A + + N+
Sbjct: 61 IQTGSSNGDYSDDQQGQGEWDLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQA 120
Query: 371 VIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAK 430
V + SL A + + A
Sbjct: 121 VSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAA----------------------- 157
Query: 431 IGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPV 490
A+GQ + + + + P + N
Sbjct: 158 ---AQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVG----GTTLYTTSA 210
Query: 491 ASMTNSITEFNKIWSRMTSFFSARGPNLID--PAILKPDVIAPGVDIIAAFTNEYGPSHE 548
+ +N + S + + G ++ + P+ PG ++ + +
Sbjct: 211 GAYSNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTG 270
Query: 549 EFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD----WSPAAIKSAIMTTATTEDSSK 604
+ GTS+A P G+ +++ + + + + + T + D
Sbjct: 271 ALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKS 330
Query: 605 HPILDQVTGQKATP---FAYGAGHVN 627
G A + G G ++
Sbjct: 331 GNNGYGGYGYNAGTGWDYPTGWGSLD 356
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.79 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.59 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.41 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.33 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 94.16 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=5.9e-52 Score=485.15 Aligned_cols=372 Identities=21% Similarity=0.198 Sum_probs=265.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHH----HH--HhcC
Q 047013 26 AKKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHA----KQ--IARH 99 (781)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i----~~--L~~~ 99 (781)
.+.+|||.||+... ..++++.+ ..++.+++. .++.+.++++...+ +. +..+
T Consensus 30 ~~~~~iV~~k~~~~---------------~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (671)
T d1r6va_ 30 TEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALAL 86 (671)
T ss_dssp CTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCC
T ss_pred CCCeEEEEECCccC---------------HHHHHHhc-------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcC
Confidence 45789999997432 12223322 245666666 66777787764332 22 2358
Q ss_pred CCeEEEEEcceeccccc----CCc-----------------------cccCcccCCCCCCccccccCCCCCceEEEEecC
Q 047013 100 PEVVSVFLEEGIDLHTT----RSW-----------------------EFLGLEKDNQIPPDSAWNKARFGEDVIIGNLDS 152 (781)
Q Consensus 100 ~~V~~V~~~~~~~~~~~----~s~-----------------------~~~g~~~~~~~~~~~~w~~~~~G~gv~VaVIDt 152 (781)
|+|++|+|+...++... ... ..|++..+. ..++|....+|+||+||||||
T Consensus 87 ~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~---~~~a~~~~~tG~gV~VaViDt 163 (671)
T d1r6va_ 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEEASGTNIIVAVVDT 163 (671)
T ss_dssp SSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHHCSCTTCEEEEEES
T ss_pred CCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcC---ccHHHHhcCCCCCCEEEEEcC
Confidence 99999999866543210 000 012222211 123333456999999999999
Q ss_pred CCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCCCCCCCCCCCCcccccc
Q 047013 153 GVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPENLTTSIDHNGHGTHTL 232 (781)
Q Consensus 153 Gid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~gHGThVA 232 (781)
|||++||+|.++ ++..+++..+.+. | ...+..|..|||||||
T Consensus 164 Gvd~~Hpdl~~~--------------------------~~~~~~~~~~~~~-----------~-~~~~~~d~~gHGT~VA 205 (671)
T d1r6va_ 164 GVDGTHPDLEGQ--------------------------VIAGYRPAFDEEL-----------P-AGTDSSYGGSAGTHVA 205 (671)
T ss_dssp CCBTTSGGGTTT--------------------------BCCEEEGGGTEEE-----------C-TTCBCCTTCSHHHHHH
T ss_pred CcCCCChhhcCC--------------------------cccCccccccCCC-----------C-CCCcCcccCCCCcccc
Confidence 999999999754 2222222211000 0 0224567889999999
Q ss_pred ccccccccccccccccCCccccccCCCceEeecccccCCC---CCCCCChHHHHHHHHHhhhcCCcEEEecCCCCCCCCC
Q 047013 233 STAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPN---GANLCNAADIIAGFDVAIHDGVDIISASLGSKPKEHF 309 (781)
Q Consensus 233 Giiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~---~~~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 309 (781)
|||||+.+ +..+.||||+|+|+++|++++.. .........+++||+||+++|++|||||||+.. .
T Consensus 206 Giiaa~~~---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~ 273 (671)
T d1r6va_ 206 GTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---Y 273 (671)
T ss_dssp HHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---C
T ss_pred ceeeeecc---------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---C
Confidence 99999752 22358999999999999986421 011456788999999999999999999999862 3
Q ss_pred CChHHHHHHHHHhCCCEEEEecCCCCCCC-CCccCCCCceEEecccCCceeeeeeEEeCCceEEeeeeeeccCCCCCcce
Q 047013 310 ESSVAVGSFHAMMHGILVVASAGNSGPAE-KTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVIKGASIAEKGSLTQDFY 388 (781)
Q Consensus 310 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 388 (781)
...+..++..+.++|+++|+||||++... ..+++..|++|+|||++.+.
T Consensus 274 ~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------ 323 (671)
T d1r6va_ 274 SYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------ 323 (671)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------------
T ss_pred ChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------------
Confidence 45677888899999999999999998754 45566789999999854221
Q ss_pred eeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecCCCCccccccccccccE
Q 047013 389 PLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPT 468 (781)
Q Consensus 389 ~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 468 (781)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCCCcEEeeecCCCCCCC-
Q 047013 469 AYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPGVDIIAAFTNEYGPSH- 547 (781)
Q Consensus 469 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~- 547 (781)
....+++||+|||.+ ||+|||++|+++++.......
T Consensus 324 -----------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~ 360 (671)
T d1r6va_ 324 -----------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYE 360 (671)
T ss_dssp -----------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCC
T ss_pred -----------------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccc
Confidence 013678999999987 999999999999875432211
Q ss_pred ----CCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccC
Q 047013 548 ----EEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGA 623 (781)
Q Consensus 548 ----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 623 (781)
.......+.|..++|||||||||||++|||+|++|+|++.|||++|++||++++..+ .+..|||
T Consensus 361 ~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~~~~~G~ 428 (671)
T d1r6va_ 361 GHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDTGY 428 (671)
T ss_dssp CCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTTBT
T ss_pred cccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCCCccc
Confidence 111223458999999999999999999999999999999999999999999875332 3468999
Q ss_pred CcccccccCCCCeee
Q 047013 624 GHVNPNSALDPGLVY 638 (781)
Q Consensus 624 G~in~~~Av~~~l~~ 638 (781)
|+||+.+||+..+..
T Consensus 429 G~vna~~Av~~~~~~ 443 (671)
T d1r6va_ 429 GLVKLDAALQGPLPT 443 (671)
T ss_dssp CBCCHHHHHHCCCCS
T ss_pred ChhCHHHHhhCcCCC
Confidence 999999999865543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.3e-49 Score=443.53 Aligned_cols=370 Identities=21% Similarity=0.259 Sum_probs=239.4
Q ss_pred cccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCc
Q 047013 134 SAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFL 213 (781)
Q Consensus 134 ~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (781)
.+|. .+|+||+|||||||||++||+|+++ ++..+++...
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~--------------------------~~~~~~~~~~------------- 53 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT------------- 53 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-------------
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC--------------------------eeeeeccCCC-------------
Confidence 4554 4899999999999999999999754 2222222211
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccccccCCccccccCC--CceEeecccccCCCCCCCCChHHHHHHHHHhhh
Q 047013 214 VPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSP--KARLAAYKVCWKPNGANLCNAADIIAGFDVAIH 291 (781)
Q Consensus 214 ~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~ 291 (781)
.+...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++.... .+...++++||+++++
T Consensus 54 --~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~---~~~~~~~~~a~~~a~~ 119 (435)
T d1v6ca_ 54 --GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG---WGYSSSLVAAIDTCVN 119 (435)
T ss_dssp --CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE---ECCSSCHHHHHHHHHH
T ss_pred --CCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccc---cchhhhhhhHHHHHhh
Confidence 11235678899999999999998622 23589999 89999999988765 4667789999999986
Q ss_pred -cCCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCce
Q 047013 292 -DGVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKM 370 (781)
Q Consensus 292 -~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~ 370 (781)
.+++|||+|||... ....+..++..+.++|+++|+||||+|....++++..+++|+|||++.+........++...
T Consensus 120 ~~~~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~v 196 (435)
T d1v6ca_ 120 SGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQV 196 (435)
T ss_dssp TTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSE
T ss_pred cccceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCce
Confidence 59999999999873 33456677888999999999999999998888888999999999987765432222222111
Q ss_pred EE--eeeeeeccCCCCCcceee-Eecc------------cccccc-------cCc---cccCCC--CCCCCCCCCceeEE
Q 047013 371 VI--KGASIAEKGSLTQDFYPL-IAGE------------AAKVAN-------VSN---EDATQC--KNGTIDPEKVKGKI 423 (781)
Q Consensus 371 ~~--~g~~~~~~~~~~~~~~~l-v~~~------------~~~~~~-------~~~---~~~~~c--~~~~~~~~~~~gki 423 (781)
.+ .|..+......+...... .... ...... ... .....| ....+...++.+++
T Consensus 197 dv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (435)
T d1v6ca_ 197 EISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKI 276 (435)
T ss_dssp EEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEE
T ss_pred EEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccccccc
Confidence 11 111111000000000000 0000 000000 000 000000 01122234556667
Q ss_pred EEEecCC------cchHHHHHHHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecce
Q 047013 424 LICYDAK------IGDAKGQRAAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSI 497 (781)
Q Consensus 424 vl~~~g~------~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 497 (781)
.++.+.. ............++.+++.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 311 (435)
T d1v6ca_ 277 CLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN--------------------------------------------- 311 (435)
T ss_dssp EEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC---------------------------------------------
T ss_pred ceeeccCCccccceeeeeceeecccCCcceEEecc---------------------------------------------
Confidence 7776643 3344555566666666665543
Q ss_pred eeeccccCCccccccCCCCCCC--CCCCccCeeeeCCCcEEeeecCCC----CCCCCCCCCCcccceeeccccchhhHHH
Q 047013 498 TEFNKIWSRMTSFFSARGPNLI--DPAILKPDVIAPGVDIIAAFTNEY----GPSHEEFDPRRVPYNVMSGTSMACPHVA 571 (781)
Q Consensus 498 ~~~~~~~~~~~a~fSs~Gp~~~--~~~~~KPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP~VA 571 (781)
+.+|... .....||||.+||..|.++..... .............|..||||||||||||
T Consensus 312 ---------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VA 376 (435)
T d1v6ca_ 312 ---------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVS 376 (435)
T ss_dssp ---------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHH
T ss_pred ---------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHH
Confidence 2222221 124578899999988865432100 0000000112247999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCC
Q 047013 572 GIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 572 G~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
|++|||+|+||+|+++|||++||+||++++. .+++++||+|+||+.+|++
T Consensus 377 G~aALl~q~~P~~s~~~vk~~L~~TA~~~~~------------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 377 GVATLVWSYHPECSASQVRAALNATADDLSV------------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS------------SSCBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhhCcccCC------------CCCCCCcccceecHHHHHH
Confidence 9999999999999999999999999987632 3456899999999999965
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.5e-48 Score=410.24 Aligned_cols=259 Identities=29% Similarity=0.370 Sum_probs=212.0
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+.+|+++++|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 21 ~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T d1dbia_ 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccCC------------
Confidence 58999999999999999999999999999753 3444444322
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...++++||+|++++
T Consensus 63 -----~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 126 (280)
T d1dbia_ 63 -----DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNG---SGTLSDIADAIIYAADS 126 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHc
Confidence 224668899999999999987532 23468999999999999998776 57899999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 127 g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~---------------- 187 (280)
T d1dbia_ 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ---------------- 187 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------------
T ss_pred CCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC----------------
Confidence 9999999999873 334456677888999999999999999877777778899999998432
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
.+.++.||++||.. |++|||
T Consensus 188 ----------------------------------------------------~~~~a~~S~~g~~~--------d~~apg 207 (280)
T d1dbia_ 188 ----------------------------------------------------YDRLASFSNYGTWV--------DVVAPG 207 (280)
T ss_dssp ----------------------------------------------------TSCBCTTBCCSTTC--------CEEEEC
T ss_pred ----------------------------------------------------CCCcCCcCCCCCcc--------cccCCc
Confidence 25788999999987 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
.+|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 208 ~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---------- 262 (280)
T d1dbia_ 208 VDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---------- 262 (280)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT----------
T ss_pred cceeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC----------
Confidence 9999998764 8999999999999999999999995 56899999999999987632
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
+...||+|+||+++||+
T Consensus 263 ----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 ----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ----BTTTBSSEECCHHHHHT
T ss_pred ----CCCcCCCCeEcHHHHcC
Confidence 23579999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.3e-48 Score=410.15 Aligned_cols=257 Identities=30% Similarity=0.457 Sum_probs=214.6
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+.+|.++++|+||+|||||||||++||+|+. ...++|..+
T Consensus 14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~----------------------------~~~~~~~~~------------ 53 (274)
T d1r0re_ 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVAG------------ 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECSTT------------
T ss_pred HHHHHcCCCCCCeEEEEECCCCCCCChhhcc----------------------------cCCccccCC------------
Confidence 4789999999999999999999999999952 233444432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+++++..+ .+..++++++++++.++
T Consensus 54 -----~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~ 116 (274)
T d1r0re_ 54 -----EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSG---SGSYSGIVSGIEWATTN 116 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred -----CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 124567889999999999987522 2358999999999999998776 46789999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC----CccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK----TVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|+|+|||... ..........++.++++++|+||||+|.... ..+...+++|+|||++.+
T Consensus 117 ~~~i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~----------- 182 (274)
T d1r0re_ 117 GMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN----------- 182 (274)
T ss_dssp TCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-----------
T ss_pred CCceecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC-----------
Confidence 9999999999873 2334556677889999999999999986532 334456889999984422
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++||.+ ||
T Consensus 183 ---------------------------------------------------------~~~~~~s~~g~~~--------di 197 (274)
T d1r0re_ 183 ---------------------------------------------------------SNRASFSSVGAEL--------EV 197 (274)
T ss_dssp ---------------------------------------------------------SCBCTTCCCSTTE--------EE
T ss_pred ---------------------------------------------------------CCcccccCCCCCE--------EE
Confidence 5788999999865 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~ 608 (781)
+|||++|+++...+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 198 ~APG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------- 257 (274)
T d1r0re_ 198 MAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------- 257 (274)
T ss_dssp EEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-------
T ss_pred EecCCCcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-------
Confidence 99999999998764 8999999999999999999999999999999999999999998763
Q ss_pred ccCCCCCCCCCcccCCcccccccCC
Q 047013 609 DQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 609 ~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
+...||+|+||+.+|++
T Consensus 258 --------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 --------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --------CHHHHTTCBCCHHHHTC
T ss_pred --------CCCceEcCeecHHHhcC
Confidence 23589999999999986
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=8.7e-48 Score=402.45 Aligned_cols=256 Identities=32% Similarity=0.456 Sum_probs=217.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+.+|.++++|+||+|+||||||+ +||+|... ..++|..+
T Consensus 14 ~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----------------------------~~~~~~~~------------ 52 (269)
T d1gcia_ 14 PAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----------------------------GGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----------------------------EEEECSTT------------
T ss_pred HHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----------------------------ccccccCC------------
Confidence 48999999999999999999998 89999532 22333322
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|.++|||||||||++... .....|+||+|+|+.+|++...+ .+....+.++++++..+
T Consensus 53 -----~~~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 115 (269)
T d1gcia_ 53 -----EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIAQGLEWAGNN 115 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHT
T ss_pred -----CCCccccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCC---CccHHHHHHHHHHHHhc
Confidence 12456788999999999998752 23457999999999999998776 47788999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
++++||+|||... .......+...+.++|+++|+||||+|.....++...+++|+||+++.+
T Consensus 116 ~~~~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 177 (269)
T d1gcia_ 116 GMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------- 177 (269)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred ccccccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC---------------
Confidence 9999999999872 2344566778889999999999999998877777888999999985432
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++||.+ ||+|||
T Consensus 178 -----------------------------------------------------~~~~~~S~~G~~~--------di~Apg 196 (269)
T d1gcia_ 178 -----------------------------------------------------NNRASFSQYGAGL--------DIVAPG 196 (269)
T ss_dssp -----------------------------------------------------SCBCTTCCCSTTE--------EEEEEC
T ss_pred -----------------------------------------------------CCcccccCCCCCc--------eEEEee
Confidence 5788999999977 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
.++.++.... .|..++|||||||+|||++|||+|++|+|++++||++|++||++++.
T Consensus 197 ~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------- 253 (269)
T d1gcia_ 197 VNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------- 253 (269)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC----------
T ss_pred ecceeccCCC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC----------
Confidence 9999988764 89999999999999999999999999999999999999999987632
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
...||+|+||+++|++
T Consensus 254 -----~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 254 -----TNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----HHHHTTCBCCHHHHTC
T ss_pred -----CCCcccCeEcHHHhcC
Confidence 3478999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1e-47 Score=404.28 Aligned_cols=258 Identities=30% Similarity=0.402 Sum_probs=219.8
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~--------------------------~~~~~~~~~~------------ 61 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------ 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC--------------------------eecccccccc------------
Confidence 4889887 999999999999999999999753 4455555432
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
...+.|..+|||||||+|++...+ ...+.||||+|+|+.+|++...+ .+...+++++|+++++.
T Consensus 62 -----~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 125 (279)
T d1thma_ 62 -----DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSG---SGTWTAVANGITYAADQ 125 (279)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CcccccccccccccceeeeeccCC--------CccccccCCcceEEEEEEEecCC---CCcHHHHHHHHHHHhhc
Confidence 235668899999999999998633 23458999999999999998776 57889999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccCCCCceEEecccCCceeeeeeEEeCCceEE
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDNVPPWVLTVGASTTDREFSSYVTLGNKMVI 372 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~ 372 (781)
+++|+|+|||... .......+...+.++|+++|+|+||+|..........+++|+|||++.+
T Consensus 126 ~~~i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~--------------- 187 (279)
T d1thma_ 126 GAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------- 187 (279)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCceeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC---------------
Confidence 9999999999873 3445667778899999999999999998877777788999999985432
Q ss_pred eeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEecC
Q 047013 373 KGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILANS 452 (781)
Q Consensus 373 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~~~ 452 (781)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeeeCC
Q 047013 453 REDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIAPG 532 (781)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (781)
+.++.||++|++. ||.|||
T Consensus 188 -----------------------------------------------------~~~~~~S~~G~~~--------di~Apg 206 (279)
T d1thma_ 188 -----------------------------------------------------DNKSSFSTYGSWV--------DVAAPG 206 (279)
T ss_dssp -----------------------------------------------------SCBCTTCCCCTTC--------CEEEEC
T ss_pred -----------------------------------------------------CCCccccCCCceE--------EEeeee
Confidence 5788999999988 999999
Q ss_pred CcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccccCC
Q 047013 533 VDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPILDQVT 612 (781)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~~~~~ 612 (781)
.+|+++.+.+ .|..++|||||||+|||++|||+|.+| ++.+||++|++||+++..
T Consensus 207 ~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g---------- 261 (279)
T d1thma_ 207 SSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG---------- 261 (279)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT----------
T ss_pred eccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC----------
Confidence 9999998875 899999999999999999999999765 799999999999987631
Q ss_pred CCCCCCCcccCCcccccccCC
Q 047013 613 GQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 613 ~~~~~~~~~G~G~in~~~Av~ 633 (781)
....||+|+||+.+||+
T Consensus 262 ----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 262 ----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ----BTTTBSSEECCHHHHHH
T ss_pred ----CCCcceeeeEcHHHhhC
Confidence 24579999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=6.7e-48 Score=406.04 Aligned_cols=259 Identities=31% Similarity=0.451 Sum_probs=215.6
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
+.+|.++++|+||+|+|||||||++||+|+.. ..+++...
T Consensus 14 ~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----------------------------~~~~~~~~------------ 53 (281)
T d1to2e_ 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----------------------------GGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----------------------------EEEECCTT------------
T ss_pred HHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----------------------------CCccccCC------------
Confidence 48999999999999999999999999999632 22223221
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
+.....+..+|||||||||+|... +....||||+|+|+.+|++..++ .+...+++++|+|++..
T Consensus 54 ----~~~~~~~~~~HGT~vAgiiag~~~---------~~~~~giAp~a~l~~~kv~~~~~---~~~~~~~~~ai~~a~~~ 117 (281)
T d1to2e_ 54 ----ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADG---SGQYSWIINGIEWAIAN 117 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred ----CCCCCcCcCCCCceeecccccCCC---------CCCcceeecccEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 011233467999999999998752 22358999999999999998766 46788999999999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCC----CccCCCCceEEecccCCceeeeeeEEeCC
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEK----TVDNVPPWVLTVGASTTDREFSSYVTLGN 368 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~d~~~~~~~~~~~ 368 (781)
+++|||+|||.. .....+..++..+.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 118 ~~~v~n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~----------- 183 (281)
T d1to2e_ 118 NMDVINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS----------- 183 (281)
T ss_dssp TCSEEEECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-----------
T ss_pred cccccccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC-----------
Confidence 999999999986 34456778888899999999999999986532 234567889999985422
Q ss_pred ceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEE
Q 047013 369 KMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMI 448 (781)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i 448 (781)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCee
Q 047013 449 LANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDV 528 (781)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (781)
+.++.||++||.+ |+
T Consensus 184 ---------------------------------------------------------~~~~~~S~~G~~~--------d~ 198 (281)
T d1to2e_ 184 ---------------------------------------------------------NQRASFSSVGPEL--------DV 198 (281)
T ss_dssp ---------------------------------------------------------SCBCTTCCCSTTC--------CE
T ss_pred ---------------------------------------------------------CCCCcccCCCCCc--------cc
Confidence 5788999999987 99
Q ss_pred eeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 047013 529 IAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHPIL 608 (781)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~~~ 608 (781)
.|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++..
T Consensus 199 ~apG~~i~s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------ 259 (281)
T d1to2e_ 199 MAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------ 259 (281)
T ss_dssp EEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------
T ss_pred cCCCCCceeecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------
Confidence 99999999998764 88999999999999999999999999999999999999999987632
Q ss_pred ccCCCCCCCCCcccCCcccccccCCC
Q 047013 609 DQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 609 ~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
...||+|+||+.+|++.
T Consensus 260 ---------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 260 ---------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------HHHHTTCBCCHHHHTSS
T ss_pred ---------CCCcccCcccHHHHHhh
Confidence 34799999999999993
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.8e-43 Score=374.76 Aligned_cols=287 Identities=27% Similarity=0.335 Sum_probs=217.2
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|+|||||||++||+|.++ +...++|......
T Consensus 16 ~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~--------------------------~~~~~~~~~~~~~--------- 60 (309)
T d2ixta1 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATTP--------- 60 (309)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSSC---------
T ss_pred hhhhccCCCCCCeEEEEEccCCCCCChhHhcc--------------------------ccccccccCCCCC---------
Confidence 47899999999999999999999999999753 4444455432110
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
......|..+|||||||||+|...++ ...+.||||+|+|+.++++...+ .+..++++.+++++++.
T Consensus 61 ----~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~~~~~a~~~ 126 (309)
T d2ixta1 61 ----INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSG---SGYSDDIAAAIRHAADQ 126 (309)
T ss_dssp ----EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ----CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCC---Ccccccccccccccccc
Confidence 01245678899999999999875322 23458999999999999988776 47888999999998865
Q ss_pred C-----CcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCc--cCCCCceEEecccCCceeeeeeEE
Q 047013 293 G-----VDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTV--DNVPPWVLTVGASTTDREFSSYVT 365 (781)
Q Consensus 293 g-----~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~d~~~~~~~~ 365 (781)
+ ..|+|+||+... .......++..+.++|+++|+||||++...... +...+++++|++.+........
T Consensus 127 ~~~~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-- 201 (309)
T d2ixta1 127 ATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-- 201 (309)
T ss_dssp HHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE--
T ss_pred cccccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc--
Confidence 3 478999999762 334456677788899999999999998765443 3355788888874322100000
Q ss_pred eCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCce
Q 047013 366 LGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAV 445 (781)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~ 445 (781)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCcc
Q 047013 446 GMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILK 525 (781)
Q Consensus 446 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 525 (781)
..........++++|+.. ....|
T Consensus 202 -------------------------------------------------------~~~~~~~~~~~~~~~~~~--~~~~~ 224 (309)
T d2ixta1 202 -------------------------------------------------------RVADYSSRGYISTAGDYV--IQEGD 224 (309)
T ss_dssp -------------------------------------------------------EECTTSCCCCTTTTTSSS--CCTTC
T ss_pred -------------------------------------------------------cccccccccccccccccc--cCCCc
Confidence 000012444567777766 66789
Q ss_pred CeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCC
Q 047013 526 PDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKH 605 (781)
Q Consensus 526 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~ 605 (781)
|||+|||.+|+++.... .|..++|||||||+|||++|||+|++|+|++++||++|++||++++..+.
T Consensus 225 vdi~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~ 291 (309)
T d2ixta1 225 IEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG 291 (309)
T ss_dssp CCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS
T ss_pred ceeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC
Confidence 99999999999998764 89999999999999999999999999999999999999999998865432
Q ss_pred cccccCCCCCCCCCcccCCcccc
Q 047013 606 PILDQVTGQKATPFAYGAGHVNP 628 (781)
Q Consensus 606 ~~~~~~~~~~~~~~~~G~G~in~ 628 (781)
.......++.+|+|++|+
T Consensus 292 -----~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 292 -----YGAAIGDDYASGFGFARV 309 (309)
T ss_dssp -----TTCCSSSBTTTBTCBCCC
T ss_pred -----cCCccCCCcccCCCEecC
Confidence 122344567889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=5.8e-43 Score=367.63 Aligned_cols=241 Identities=32% Similarity=0.393 Sum_probs=195.5
Q ss_pred ccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCcc
Q 047013 135 AWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLV 214 (781)
Q Consensus 135 ~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (781)
.|....+|+||+|+|||||||++||+|.++ +.....+
T Consensus 23 ~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~--------------------------~~~~~~~----------------- 59 (279)
T d2pwaa1 23 YYYDESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTY----------------- 59 (279)
T ss_dssp EECCTTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEES-----------------
T ss_pred ceecCCCCCCeEEEEECcCCCCCChhhcCC--------------------------ceeccCC-----------------
Confidence 333466999999999999999999999754 1111111
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc--
Q 047013 215 PENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-- 292 (781)
Q Consensus 215 p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-- 292 (781)
.....|.+||||||||||+|+. .|+||+|+|+.+|++.... ....+.+..+++++...
T Consensus 60 ---~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (279)
T d2pwaa1 60 ---YYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDKN 119 (279)
T ss_dssp ---SSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHGG
T ss_pred ---CCCcccccCccccccccccccc--------------cccCCCccccceeeecCCc---ccccccccchhheeccccc
Confidence 1134577899999999999874 6999999999999988766 47788899999998764
Q ss_pred -----CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC-ccCCCCceEEecccCCceeeeeeEEe
Q 047013 293 -----GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT-VDNVPPWVLTVGASTTDREFSSYVTL 366 (781)
Q Consensus 293 -----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~d~~~~~~~~~ 366 (781)
+++|+|+|||.. ..+.+..++..+.++|+++|+||||++..... .+...|++|+|||++.
T Consensus 120 ~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------- 185 (279)
T d2pwaa1 120 NRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------- 185 (279)
T ss_dssp GSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred ccccccccceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----------
Confidence 356999999976 34567778888999999999999999866443 3456789999998542
Q ss_pred CCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceE
Q 047013 367 GNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVG 446 (781)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g 446 (781)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccC
Q 047013 447 MILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKP 526 (781)
Q Consensus 447 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (781)
.+.++.||++||..
T Consensus 186 ----------------------------------------------------------~g~~~~~S~~G~~~-------- 199 (279)
T d2pwaa1 186 ----------------------------------------------------------YDRRSSFSNYGSVL-------- 199 (279)
T ss_dssp ----------------------------------------------------------TSBBCTTCCBSTTC--------
T ss_pred ----------------------------------------------------------cCCCccccCCCCcc--------
Confidence 25788999999987
Q ss_pred eeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCc
Q 047013 527 DVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATTEDSSKHP 606 (781)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~~~~~g~~ 606 (781)
||+|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++..
T Consensus 200 dv~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----- 260 (279)
T d2pwaa1 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----- 260 (279)
T ss_dssp CEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-----
T ss_pred ccccccccccccccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-----
Confidence 9999999999998864 899999999999999999999999999999887775 677886531
Q ss_pred ccccCCCCCCCCCcccCCcccc
Q 047013 607 ILDQVTGQKATPFAYGAGHVNP 628 (781)
Q Consensus 607 ~~~~~~~~~~~~~~~G~G~in~ 628 (781)
....|+|++|+
T Consensus 261 -----------~~~~g~g~~n~ 271 (279)
T d2pwaa1 261 -----------LSNIPFGTVNL 271 (279)
T ss_dssp -----------CBSCCTTSCCE
T ss_pred -----------CCCCCCCChhh
Confidence 24579999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1e-40 Score=357.25 Aligned_cols=298 Identities=24% Similarity=0.280 Sum_probs=219.5
Q ss_pred ccccc-CCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 134 SAWNK-ARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 134 ~~w~~-~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
.+|.. |+||+||+|||||||||++||+|.... ....++...+.+..
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------------------~~~~~~~~~~~~~~------------- 58 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE--------------------AFRGKITALYALGR------------- 58 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT--------------------TTTTCEEEEEETTT-------------
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc--------------------ccCCcEEeecCCCC-------------
Confidence 67775 999999999999999999999997531 01122333332211
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
.....|..||||||||||+|+.. ...||||+|+|+.+|+++..+.. ......+..+++++...
T Consensus 59 -----~~~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~ 121 (318)
T d1wmda2 59 -----TNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQAYSA 121 (318)
T ss_dssp -----TTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHHHHHT
T ss_pred -----CCCCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccc-cccchhhHHHHHHHHhc
Confidence 12456789999999999998742 13799999999999999876521 24456688899999999
Q ss_pred CCcEEEecCCCCCCCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCCccC--CCCceEEecccCCceeeeeeEEeCCce
Q 047013 293 GVDIISASLGSKPKEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKTVDN--VPPWVLTVGASTTDREFSSYVTLGNKM 370 (781)
Q Consensus 293 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~--~~p~vitVgA~~~d~~~~~~~~~~~~~ 370 (781)
+++|+|+|||.............+...+.++++++|+|+||.|........ ..++++++.+.......
T Consensus 122 ~~~i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~---------- 191 (318)
T d1wmda2 122 GARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS---------- 191 (318)
T ss_dssp TCSEEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG----------
T ss_pred CCceeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc----------
Confidence 999999999987544455556666667789999999999999977655443 45667777663322100
Q ss_pred EEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhcCceEEEEe
Q 047013 371 VIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQAGAVGMILA 450 (781)
Q Consensus 371 ~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~Ga~g~i~~ 450 (781)
. +
T Consensus 192 --------------------~-----------------~----------------------------------------- 193 (318)
T d1wmda2 192 --------------------F-----------------G----------------------------------------- 193 (318)
T ss_dssp --------------------G-----------------C-----------------------------------------
T ss_pred --------------------c-----------------c-----------------------------------------
Confidence 0 0
Q ss_pred cCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCCCccCeeee
Q 047013 451 NSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPAILKPDVIA 530 (781)
Q Consensus 451 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (781)
........+..||++||.. ....|||+.|
T Consensus 194 -------------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a 222 (318)
T d1wmda2 194 -------------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMA 222 (318)
T ss_dssp -------------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEE
T ss_pred -------------------------------------------------cccccccccccccccCCCc--CCCcccceee
Confidence 0001124677899999987 7789999999
Q ss_pred CCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhC-----CCCCHHHHHHHHHhccccCCCCCC
Q 047013 531 PGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLH-----PDWSPAAIKSAIMTTATTEDSSKH 605 (781)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~lt~~~ik~~L~~TA~~~~~~g~ 605 (781)
||.+|+++......... ........|..++|||||||||||++|||+|++ +.+++.+||++|++||++++.
T Consensus 223 ~G~~i~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~--- 298 (318)
T d1wmda2 223 PGTFILSARSSLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL--- 298 (318)
T ss_dssp ECSSEEEECCTTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS---
T ss_pred cCceEEeccccccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC---
Confidence 99999998766432111 111123468889999999999999999999974 467899999999999987643
Q ss_pred cccccCCCCCCCCCcccCCcccccccCC
Q 047013 606 PILDQVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 606 ~~~~~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
..+...||||+||+.+||+
T Consensus 299 ---------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 ---------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp ---------CSSCTTTTTCBCCHHHHHT
T ss_pred ---------CCCCCCeeeceecHHHHhC
Confidence 2345789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-39 Score=348.20 Aligned_cols=284 Identities=15% Similarity=0.222 Sum_probs=192.7
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|.++- .....|... .. +
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~--------------------------~~~~~~~~~--~~----~--- 71 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY--------------------------DPGASFDVN--DQ----D--- 71 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB--------------------------CGGGCEETT--TT----B---
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc--------------------------ccCCCcccc--CC----C---
Confidence 589999999999999999999999999998641 111111100 00 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhh-
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIH- 291 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~- 291 (781)
..+.......|..+|||||||||+|...++. ...|+||+++++.+|++.. .....+.++.++++
T Consensus 72 ~~~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~ 136 (334)
T d1p8ja2 72 PDPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG-------EVTDAVEARSLGLNP 136 (334)
T ss_dssp SCCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS-------CCCHHHHHHHHTSCT
T ss_pred CccccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc-------cccchHHHHHHHhhh
Confidence 0111123456789999999999999864322 2378999999999999753 33566678888775
Q ss_pred cCCcEEEecCCCCCC-CCCCCh--------HHHHHHHHHhCCCEEEEecCCCCCCCCCccC----CCCceEEecccCCce
Q 047013 292 DGVDIISASLGSKPK-EHFESS--------VAVGSFHAMMHGILVVASAGNSGPAEKTVDN----VPPWVLTVGASTTDR 358 (781)
Q Consensus 292 ~g~dVIN~SlG~~~~-~~~~~~--------~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~----~~p~vitVgA~~~d~ 358 (781)
.+++++|+|||.... .....+ ...+...+..+|+++|+||||++........ ..+.+++|++++.
T Consensus 137 ~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 214 (334)
T d1p8ja2 137 NHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ-- 214 (334)
T ss_dssp TTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT--
T ss_pred cCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc--
Confidence 689999999998631 111111 2223344567999999999998755433221 2344555554322
Q ss_pred eeeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHH
Q 047013 359 EFSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQR 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 438 (781)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCC
Q 047013 439 AAQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNL 518 (781)
Q Consensus 439 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (781)
.+..+.||++|+..
T Consensus 215 ------------------------------------------------------------------~g~~~~~s~~~~~~ 228 (334)
T d1p8ja2 215 ------------------------------------------------------------------FGNVPWYSEACSST 228 (334)
T ss_dssp ------------------------------------------------------------------TSCCCTTCCBCTTC
T ss_pred ------------------------------------------------------------------CCceeeecccCCcc
Confidence 24555666666554
Q ss_pred CCCCCccCeeeeCCCc-----EEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 047013 519 IDPAILKPDVIAPGVD-----IIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAI 593 (781)
Q Consensus 519 ~~~~~~KPDI~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L 593 (781)
..+..+||.. +.+.... ..|..++|||||||||||++|||+|++|+|++.|||++|
T Consensus 229 ------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L 289 (334)
T d1p8ja2 229 ------LATTYSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLV 289 (334)
T ss_dssp ------CEEEECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred ------ccccccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1133444432 2222221 378899999999999999999999999999999999999
Q ss_pred HhccccCCCCCCcccccCCCCCCCCCcccCCcccccccCCC
Q 047013 594 MTTATTEDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDP 634 (781)
Q Consensus 594 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~ 634 (781)
++||++....+..+.. ..........||+|+||+++||+.
T Consensus 290 ~~TA~~~~~~~~~~~~-~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 290 VQTSKPAHLNADDWAT-NGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp HHHCBCTTCCCSCCEE-CTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHhCcccCCCCccccc-cCCCcccCCCCcceEeCHHHHHHH
Confidence 9999987654433322 222233456789999999999984
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-39 Score=347.23 Aligned_cols=287 Identities=17% Similarity=0.181 Sum_probs=202.8
Q ss_pred ccccccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCC
Q 047013 133 DSAWNKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSF 212 (781)
Q Consensus 133 ~~~w~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (781)
..+|..+++|+||+|||||||||++||+|+++-. ..+.++|.+..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~------------------------~~~~~~~~~~~----------- 80 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC------------------------AEGSWDFNDNT----------- 80 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC------------------------GGGCEETTTTB-----------
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc------------------------cccccccccCC-----------
Confidence 6899999999999999999999999999986410 01122232210
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc
Q 047013 213 LVPENLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD 292 (781)
Q Consensus 213 ~~p~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 292 (781)
.......+..+|||||||+|+|....+ ..+.||||+|+|+.+++... ......+..++.+++..
T Consensus 81 ---~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 144 (339)
T d2id4a2 81 ---NLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG-----DITTEDEAASLIYGLDV 144 (339)
T ss_dssp ---SCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS-----CCCHHHHHHHTTTTTTT
T ss_pred ---CccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec-----cccchHHHHHHHHHHhh
Confidence 012245567899999999999875432 23489999999999999763 26677788888887665
Q ss_pred CCcEEEecCCCCCCC-CC---CCh-----HHHHHHHHHhCCCEEEEecCCCCCCCCCcc--C--CCCceEEecccCCcee
Q 047013 293 GVDIISASLGSKPKE-HF---ESS-----VAVGSFHAMMHGILVVASAGNSGPAEKTVD--N--VPPWVLTVGASTTDRE 359 (781)
Q Consensus 293 g~dVIN~SlG~~~~~-~~---~~~-----~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~--~~p~vitVgA~~~d~~ 359 (781)
.+|+|+|||..... .. ... ...+...+..+|+++|+||||++....... . ..+.+++|++++
T Consensus 145 -~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~---- 219 (339)
T d2id4a2 145 -NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID---- 219 (339)
T ss_dssp -CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC----
T ss_pred -CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc----
Confidence 49999999976211 11 111 223344556799999999999875432221 1 223344444321
Q ss_pred eeeeEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHH
Q 047013 360 FSSYVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRA 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~ 439 (781)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCC
Q 047013 440 AQAGAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLI 519 (781)
Q Consensus 440 ~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (781)
..+..+.||++|+..
T Consensus 220 ----------------------------------------------------------------~~g~~~~~s~~~~~~- 234 (339)
T d2id4a2 220 ----------------------------------------------------------------HKDLHPPYSEGCSAV- 234 (339)
T ss_dssp ----------------------------------------------------------------TTSCCCTTCCCCTTE-
T ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Confidence 124667777777643
Q ss_pred CCCCccCeeeeCCCcEEeeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047013 520 DPAILKPDVIAPGVDIIAAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPDWSPAAIKSAIMTTATT 599 (781)
Q Consensus 520 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lt~~~ik~~L~~TA~~ 599 (781)
...++..+||..+.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|+.||++
T Consensus 235 ---~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~ 299 (339)
T d2id4a2 235 ---MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVG 299 (339)
T ss_dssp ---EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBC
T ss_pred ---ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcc
Confidence 34567888999998876553 268899999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCCCCCCcccCCcccccccCCCC
Q 047013 600 EDSSKHPILDQVTGQKATPFAYGAGHVNPNSALDPG 635 (781)
Q Consensus 600 ~~~~g~~~~~~~~~~~~~~~~~G~G~in~~~Av~~~ 635 (781)
++...................||||+||+.+||+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~a 335 (339)
T d2id4a2 300 LEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS 335 (339)
T ss_dssp CTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHH
T ss_pred cCCCCCccccccCCCCCcCCCccchhhCHHHHHHHH
Confidence 754322111102223344567999999999999853
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=5e-31 Score=285.82 Aligned_cols=313 Identities=15% Similarity=0.115 Sum_probs=185.6
Q ss_pred ccCCCCCceEEEEecCCCCcCCCCccCCCCCCCCCCCcccccCCCCCccccCceeeeeEeccchhhhhhccCCCCCccCC
Q 047013 137 NKARFGEDVIIGNLDSGVWPESQSFTDEGMGPIPDRWQGTCQNDTNKAITCNRKLIGIRYISEGLIESCRAMNSSFLVPE 216 (781)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~p~ 216 (781)
.++++|+||+|||||||||++||+|.+. |+ .+.. + .
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~-------------------------~~~~-----~------~ 53 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FA-------------------------SLGV-----S------A 53 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HH-------------------------HTTC-----C------C
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hh-------------------------hcCC-----C------C
Confidence 3689999999999999999999999742 00 0000 0 0
Q ss_pred CCCCCCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhh---hcC
Q 047013 217 NLTTSIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAI---HDG 293 (781)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~---~~g 293 (781)
......+.++|+|||+|++++...... .....+.||||+|+|+.+|+.... ..++.++++++ +.+
T Consensus 54 ~~~~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~--------~~~~~~i~~~~~~~~~~ 121 (357)
T d1t1ga_ 54 PQVVSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD--------AGFLNAITTAVHDPTHK 121 (357)
T ss_dssp CCEEEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH--------HHHHHHHHHHHHCTTTC
T ss_pred CCCceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC--------CchHHHHHHHHHhhhcC
Confidence 011334567899999999876532111 112245899999999999997532 34455555554 568
Q ss_pred CcEEEecCCCCCCCC---CCChHHHHHHHHHhCCCEEEEecCCCCCCCCC--------ccCCCCceEEecccCCceeeee
Q 047013 294 VDIISASLGSKPKEH---FESSVAVGSFHAMMHGILVVASAGNSGPAEKT--------VDNVPPWVLTVGASTTDREFSS 362 (781)
Q Consensus 294 ~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgA~~~d~~~~~ 362 (781)
++|||+|||...... ....+......+..+|+++|+|+||+|..... .....+++++|++.......
T Consensus 122 ~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 199 (357)
T d1t1ga_ 122 PSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA-- 199 (357)
T ss_dssp CSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--
T ss_pred CeEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--
Confidence 999999999863211 12335556667778999999999999854322 22245778888874332100
Q ss_pred eEEeCCceEEeeeeeeccCCCCCcceeeEecccccccccCccccCCCCCCCCCCCCceeEEEEEecCCcchHHHHHHHhc
Q 047013 363 YVTLGNKMVIKGASIAEKGSLTQDFYPLIAGEAAKVANVSNEDATQCKNGTIDPEKVKGKILICYDAKIGDAKGQRAAQA 442 (781)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 442 (781)
+.. ...+.. ....... ....+..
T Consensus 200 ------~~~-~~~~~~---------------~~~~~~~----~~~~g~s------------------------------- 222 (357)
T d1t1ga_ 200 ------GRI-ERETVW---------------NDGPDGG----STGGGVS------------------------------- 222 (357)
T ss_dssp ------SCE-EEEEEC---------------BCHHHHC----BCCCEEC-------------------------------
T ss_pred ------Ccc-ccceec---------------ccccccc----cccCCcc-------------------------------
Confidence 000 000000 0000000 0000000
Q ss_pred CceEEEEecCCCCccccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEecceeeeccccCCccccccCCCCCCCCCC
Q 047013 443 GAVGMILANSREDQNISLNMVHFLPTAYVNYKDGQSVYAYIYNTENPVASMTNSITEFNKIWSRMTSFFSARGPNLIDPA 522 (781)
Q Consensus 443 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 522 (781)
.. .............+++.+++. .+
T Consensus 223 ----------------------------------------------------~~-~~~p~~~~~~~~~~~~~~~~~--~~ 247 (357)
T d1t1ga_ 223 ----------------------------------------------------RI-FPLPSWQERANVPPSANPGAG--SG 247 (357)
T ss_dssp ----------------------------------------------------SS-SCCCGGGTTSCCCCCSSTTCC--CC
T ss_pred ----------------------------------------------------cc-cccCcccccccccccccCCCC--CC
Confidence 00 000011134566778888877 89
Q ss_pred CccCeeeeCCCcEE--eeecCCCCCCCCCCCCCcccceeeccccchhhHHHHHHHHHHHhCCC---CCHHHHHHHHHhcc
Q 047013 523 ILKPDVIAPGVDII--AAFTNEYGPSHEEFDPRRVPYNVMSGTSMACPHVAGIAGLVKTLHPD---WSPAAIKSAIMTTA 597 (781)
Q Consensus 523 ~~KPDI~APG~~I~--sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---lt~~~ik~~L~~TA 597 (781)
+.|||+.+++.... ++...+ .|..++|||||||||||++|||+|+++. +...+++.+...+.
T Consensus 248 ~~~pd~~~~~~~~~~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~ 314 (357)
T d1t1ga_ 248 RGVPDVAGNADPATGYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVF 314 (357)
T ss_dssp CEECSEEEECCTTEEEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGE
T ss_pred ceecceecccCCCCceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccce
Confidence 99999999876654 444332 8999999999999999999999999654 23334444333333
Q ss_pred ccCCCCCCc-ccc---cCCCCCCCCCcccCCcccccccCC
Q 047013 598 TTEDSSKHP-ILD---QVTGQKATPFAYGAGHVNPNSALD 633 (781)
Q Consensus 598 ~~~~~~g~~-~~~---~~~~~~~~~~~~G~G~in~~~Av~ 633 (781)
+++.. |.. ... .....+.++..+|||++|+.++++
T Consensus 315 ~dit~-g~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 315 HDITE-GNNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp ECCCS-CBCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred ecccc-cCCCCCCCCCcccCccCCCCCccCchhhHHHHHH
Confidence 32210 100 000 011234456789999999888776
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=3.4e-29 Score=272.82 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=94.1
Q ss_pred CCCCCCccccccccccccccccccccccCCccccccCCCceEeecccccCCCCCCCCChHHHHHHHHHhhhc-CCcEEEe
Q 047013 221 SIDHNGHGTHTLSTAGGSFVSNVSLYGMGYGTAKGGSPKARLAAYKVCWKPNGANLCNAADIIAGFDVAIHD-GVDIISA 299 (781)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~-g~dVIN~ 299 (781)
..+..+||||+++++.+.. +...+.||||+|+|+.++++.+.+ ......++++|+|++++ +++|||+
T Consensus 64 ~~~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~~Vis~ 131 (369)
T d1ga6a_ 64 GSSNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQS---ASGNTGLTQAFNQAVSDNVAKVINV 131 (369)
T ss_dssp SCTTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECTT---SSTTHHHHHHHHHHHHHCCCSEEEE
T ss_pred CCCCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCCC---CcchHHHHHHHHHHHHcCCCceeec
Confidence 3456789999999987663 122358999999999999998776 47788999999999965 7999999
Q ss_pred cCCCCC----CCCCCChHHHHHHHHHhCCCEEEEecCCCCCCCCC-------------ccCCCCceEEecccC
Q 047013 300 SLGSKP----KEHFESSVAVGSFHAMMHGILVVASAGNSGPAEKT-------------VDNVPPWVLTVGAST 355 (781)
Q Consensus 300 SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-------------~~~~~p~vitVgA~~ 355 (781)
|||... .....+.+..++.++..+||+||+||||+|..... .+...+++++|+++.
T Consensus 132 S~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 132 SLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp CCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 999862 12233446667778889999999999999864322 223458899999753
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.79 E-value=7.3e-09 Score=81.75 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEeccceeeEEEEeCHHHHHHHhcCCCeEEEE
Q 047013 27 KKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYGRYINGFGAVLEEEHAKQIARHPEVVSVF 106 (781)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~i~~L~~~~~V~~V~ 106 (781)
+++|||.||++... .....+..++.+ ...++.+.|. .|+||+++|++++++.|+++|+|.+||
T Consensus 1 e~~YIV~fK~~~~~---------~~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE 63 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA---------MSSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE 63 (71)
T ss_dssp CEEEEEEECSSSSC---------CSHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCCh---------HHHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence 46899999998764 222333333332 3468999998 799999999999999999999999999
Q ss_pred Ecceecc
Q 047013 107 LEEGIDL 113 (781)
Q Consensus 107 ~~~~~~~ 113 (781)
+|+.++.
T Consensus 64 ~D~v~~a 70 (71)
T d1scjb_ 64 EDHIAHE 70 (71)
T ss_dssp ECCEEEE
T ss_pred CCcEEEc
Confidence 9998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.59 E-value=5.9e-08 Score=76.71 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhCCchhccccEEEEec-cceeeEEEEeCHHHHHHHhcCCC--eE
Q 047013 27 KKPYVVYLGSHSHGSNPTSHDINRARIKHHEFLGSFLGSVEEAAGLIFHSYG-RYINGFGAVLEEEHAKQIARHPE--VV 103 (781)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~~g~s~~l~~~~i~~L~~~~~--V~ 103 (781)
.++|||.||+.... ...+.+..++... ...+.+.|. ..|+||+++++++.++.|+++|+ |.
T Consensus 2 aG~YIVvlK~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVSE---------DKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCCH---------HHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCCH---------HHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 46899999997763 4445555555543 245667777 68999999999999999999665 99
Q ss_pred EEEEcc
Q 047013 104 SVFLEE 109 (781)
Q Consensus 104 ~V~~~~ 109 (781)
+||++.
T Consensus 66 yVE~D~ 71 (72)
T d1v5ib1 66 SIEEDH 71 (72)
T ss_dssp EEEECC
T ss_pred eECCCC
Confidence 999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.41 E-value=0.028 Score=46.45 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCCCeEEEecCCCCcEEEEEEEEecCCCCee-EEEEEecCCceEEEEeecEEEEcCCCcEEEEEEEEEeecCCCCCCCce
Q 047013 680 FNYPSIAVPNLVNGSMTVSRRLKNVGTPTCT-YKAQITEIVGVSAVVEPITLNFTKYGEELTFKITFSVKGNDKPVATDY 758 (781)
Q Consensus 680 ln~ps~~~~~~~~~~~~~~~tv~n~~~~~~~-y~~~~~~~~~~~v~~~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~ 758 (781)
+..|++.+.-. ...+++++|+|.|+...+ -++.++.|.|=+++ +....+ ++||++++++++++. .....+.|
T Consensus 6 ~t~p~~~v~pG--~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p--~~a~~G~Y 78 (103)
T d1w8oa1 6 FTIPDVALEPG--QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVP--AGTTPGRY 78 (103)
T ss_dssp EECCCEEECTT--CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECC--TTCCCEEE
T ss_pred ccCcceeeCCC--CeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECC--CCCCCceE
Confidence 44567777654 589999999999986654 56788889997765 444456 799999999999983 34445555
Q ss_pred EEEEEEEEcCcc
Q 047013 759 VFGELVWSDGFH 770 (781)
Q Consensus 759 ~~G~i~~~~~~~ 770 (781)
.. .+..+.+..
T Consensus 79 ~i-~~~a~~~~~ 89 (103)
T d1w8oa1 79 RV-GATLRTSAG 89 (103)
T ss_dssp EE-EEEEEETTE
T ss_pred EE-EEEEEeCCc
Confidence 33 355555433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0013 Score=60.97 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCCCCCCCC--CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCCCCccc-------------cccc--------
Q 047013 407 TQCKNGTID--PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSREDQNI-------------SLNM-------- 462 (781)
Q Consensus 407 ~~c~~~~~~--~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-------------~~~~-------- 462 (781)
..|...+|. ..+++|||+|+++|. .+.+|..+|+++||.|+|+|.+...... ..++
T Consensus 47 n~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps 126 (193)
T d1de4c2 47 NFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPS 126 (193)
T ss_dssp STTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCC
T ss_pred cCCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCccc
Confidence 344443333 357999999999999 9999999999999999999986422100 0011
Q ss_pred -------------cccccEEEEehhhHHHHHHHHh
Q 047013 463 -------------VHFLPTAYVNYKDGQSVYAYIY 484 (781)
Q Consensus 463 -------------~~~~p~~~i~~~~g~~l~~~~~ 484 (781)
...||+.-|+..+++.|++.|.
T Consensus 127 ~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 127 FNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 1247999999999999988664
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.015 Score=55.38 Aligned_cols=49 Identities=27% Similarity=0.264 Sum_probs=41.1
Q ss_pred ccCCCCCCCCC------CCCceeEEEEEecCC-cchHHHHHHHhcCceEEEEecCC
Q 047013 405 DATQCKNGTID------PEKVKGKILICYDAK-IGDAKGQRAAQAGAVGMILANSR 453 (781)
Q Consensus 405 ~~~~c~~~~~~------~~~~~gkivl~~~g~-~~~~~~~~~~~~Ga~g~i~~~~~ 453 (781)
....|...+|. ..+++|||+|+++|. .+.+|..+|++.||.|+|+|++.
T Consensus 59 yvnyG~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 59 YVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp ECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred EecCCcHHHHHHHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 34556655552 458999999999999 89999999999999999999864
|