Citrus Sinensis ID: 047023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSMLDSDDFLR
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccEEEcEEEEEEcccccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccHHHc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHHccccccccccEEEEEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHcccHHHcc
Coil and Loop (DISEMBL)
mrllthnmlssnikgvangFPLLIEVEKVIEKQVdfnpdflknifpKIEWQALVQASRSmgyaelpeespessmldsddflr
Flexible Loop (DISEMBL)
MRLLTHNmlssnikgvanGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGyaelpeespessmldsddflr
Low Complexity Region (SEG)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAelpeespessmldsddFLR
Disordered region (IsUnstruct)
*********SSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQA**************************
Disordered Region (DISOPRED)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEES*****L**DDFLR
Disordered Region (DISEMBL)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM**********************
Disordered Region (DISPRO)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPES**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSMLDSDDFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q8LFJ5	124	TRM112-like protein At1g2	yes	no	1.0	0.661	0.686	2e-28
Q9C9R3	124	TRM112-like protein At1g7	no	no	1.0	0.661	0.626	9e-25
Q9DCG9	125	tRNA methyltransferase 11	yes	no	0.987	0.648	0.469	6e-15
Q2KIA2	125	tRNA methyltransferase 11	yes	no	0.987	0.648	0.433	2e-13
Q9UI30	125	tRNA methyltransferase 11	yes	no	0.987	0.648	0.385	6e-12
Q09723	126	Multifunctional methyltra	yes	no	0.975	0.634	0.369	5e-08
Q8X0S4	127	Protein trm-112 OS=Neuros	N/A	no	0.987	0.637	0.333	8e-08
Q9VP65	124	TRM112-like protein OS=Dr	yes	no	0.817	0.540	0.422	5e-07
Q54N57	128	TRM112-like protein OS=Di	yes	no	0.695	0.445	0.396	2e-06
O45241	125	TRM112-like protein OS=Ca	yes	no	1.0	0.656	0.321	2e-05

>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1  MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
          GYAELPEESP++++L SD+ FL+
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLK 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM
Sbjct: 1  MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
           Y ELP+ +P+++ L+SD+ FLR
Sbjct: 61 EYTELPDNAPDTTTLESDETFLR 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 1  MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
          M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ +
Sbjct: 1  MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query: 60 MGYAELPEESPESSMLDSDDFLR 82
          +  AE+P+E  E    D + FLR
Sbjct: 61 LNLAEVPKEPTEGYEHD-ETFLR 82

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Mus musculus (taxid: 10090)

>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 2/83 (2%)

Query: 1  MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
          MRLLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  
Sbjct: 1  MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADH 60

Query: 60 MGYAELPEESPESSMLDSDDFLR 82
          +   ++P+E P      +++FLR
Sbjct: 61 LHLIQVPKE-PIQGYEHNEEFLR 82

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Bos taurus (taxid: 9913)

>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 1  MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
          M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ +
Sbjct: 1  MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60

Query: 60 MGYAELPEESPESSMLDSDDFLR 82
          +   ++P + P     ++++FLR
Sbjct: 61 LRLIQVP-KGPVEGYEENEEFLR 82

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Homo sapiens (taxid: 9606)

>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm112 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 1  MRLLTHNMLSSNIKGVAN---GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
          M+LLT N L+ + K   +    FPL +   K+  +Q++  P+FL  I P+I+W AL++ +
Sbjct: 1  MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60

Query: 58 RSMGYAELPEESPESSMLDSDDFL 81
          R +G   LP+E P+  + DSD+ L
Sbjct: 61 RQLGNYSLPDEKPD-LVDDSDEVL 83

Together with mtq2, required for the methylation of eRF1 on 'Gln-182'. Together with trm11, required for the formation of 2-methylguanosine at position 10 in tRNA. Probably has additional functions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=trm-112 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 1  MRLLTHNMLSS---NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
          M+++T N L+    N K   + FPL  +  ++ +  ++ NP  L N+ P+I+W AL   S
Sbjct: 1  MKVMTLNFLTCAVKNCKSSNDSFPLHPKEAELAKDDIEINPQLLINVLPRIDWAALRTTS 60

Query: 58 RSMGYAELPEESPESSMLDSDDFL 81
            +G+  LPE+ P    L SD+ L
Sbjct: 61 TELGFPTLPEQPPSPEDLQSDEAL 84

Required for the formation of 2-methylguanosine at position 10 in tRNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 1  MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
          M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++ 
Sbjct: 1  MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQ- 59

Query: 60 MGYAELPEESP 70
             AEL E+ P
Sbjct: 60 --VAELTEDIP 68

Drosophila melanogaster (taxid: 7227)

>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 1  MRLLTHNMLSSNIK-GVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
          M++LTHNM++   K  +  GFPL +E  + I  + +FN +F KNI+PK++W  + + S
Sbjct: 1  MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGIAEIS 58

Dictyostelium discoideum (taxid: 44689)

>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 1  MRLLTHNMLSSN-IKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
          M+L  HN +SS  +K V  G+PL + V++ +EK ++F+ D    +  +I+++AL+ A+ +
Sbjct: 1  MKLFVHNFMSSRFLKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAA 60

Query: 60 MGYAE-LPEESPESSMLDSDDFLR 82
          +  ++ +P E PE     +D+ LR
Sbjct: 61 VNQSDRIPREKPEKWDELTDEQLR 84

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
224066951	122	predicted protein [Populus trichocarpa]	0.987	0.663	0.768	2e-30
255579320	122	Protein trm112, putative [Ricinus commun	0.987	0.663	0.780	5e-30
449469867	122	PREDICTED: TRM112-like protein At1g78190	0.987	0.663	0.804	8e-30
225452543	122	PREDICTED: TRM112-like protein At1g78190	0.987	0.663	0.743	2e-28
9392687	1025	EST gb|F14399 comes from this gene [Arab	1.0	0.08	0.686	4e-28
297845250	124	hypothetical protein ARALYDRAFT_472463 [	1.0	0.661	0.686	5e-27
51970200	124	hypothetical protein [Arabidopsis thalia	1.0	0.661	0.686	6e-27
18395095	124	Trm1.2-like protein [Arabidopsis thalian	1.0	0.661	0.686	7e-27
357448337	122	TRM112-like protein [Medicago truncatula	0.975	0.655	0.740	1e-26
224082123	115	predicted protein [Populus trichocarpa]	0.902	0.643	0.746	5e-26

>gi|224066951|ref|XP_002302295.1| predicted protein [Populus trichocarpa] gi|222844021|gb|EEE81568.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 77/82 (93%), Gaps = 1/82 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL THNMLSSNIKGVANGFPL IEV++V+EKQVDFNPDFL+N+FPK+EW+ALV A+R+M
Sbjct: 1  MRLFTHNMLSSNIKGVANGFPLRIEVDQVVEKQVDFNPDFLRNMFPKLEWKALVDAARTM 60

Query: 61 GYAELPEESPESSMLDSDDFLR 82
          GY ELPEE+ +SSML+S++FLR
Sbjct: 61 GYTELPEEA-DSSMLESEEFLR 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579320|ref|XP_002530505.1| Protein trm112, putative [Ricinus communis] gi|223529962|gb|EEF31889.1| Protein trm112, putative [Ricinus communis]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 76/82 (92%), Gaps = 1/82 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRLLTHNMLSSNIKGVANGFPL IEV+KVIEK+VDFNPDFLKN+F KIEW+ALV A+R+M
Sbjct: 1  MRLLTHNMLSSNIKGVANGFPLRIEVQKVIEKEVDFNPDFLKNMFSKIEWKALVDAARTM 60

Query: 61 GYAELPEESPESSMLDSDDFLR 82
          GY ELP ++ ESSML+S++F+R
Sbjct: 61 GYTELP-DAAESSMLESEEFMR 81

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469867|ref|XP_004152640.1| PREDICTED: TRM112-like protein At1g78190-like [Cucumis sativus] gi|449503943|ref|XP_004162234.1| PREDICTED: TRM112-like protein At1g78190-like [Cucumis sativus]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 74/82 (90%), Gaps = 1/82 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRLLTHNMLSSNIKGV NGFPL IEVEKV+EK VDFNPDFLKN+F KIEW+ LV ASR+M
Sbjct: 1  MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKPVDFNPDFLKNMFSKIEWKPLVDASRTM 60

Query: 61 GYAELPEESPESSMLDSDDFLR 82
          GYAELPEE+ ++SMLDS DFL+
Sbjct: 61 GYAELPEEA-DASMLDSHDFLQ 81

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452543|ref|XP_002280169.1| PREDICTED: TRM112-like protein At1g78190 [Vitis vinifera] gi|296087709|emb|CBI34965.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 73/82 (89%), Gaps = 1/82 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRLLTHNMLSSNIKGV NGFPL +EVEK++EKQVDFN DFLKN+F KIEW+AL  A+++M
Sbjct: 1  MRLLTHNMLSSNIKGVTNGFPLRVEVEKMVEKQVDFNADFLKNMFTKIEWKALFDAAQTM 60

Query: 61 GYAELPEESPESSMLDSDDFLR 82
          GY +LP E+ ESSMLDSD+FL+
Sbjct: 61 GYTDLPAEA-ESSMLDSDEFLK 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9392687|gb|AAF87264.1|AC068562_11 EST gb|F14399 comes from this gene [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1  MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
          GYAELPEESP++++L SD+ FL+
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLK 83

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845250|ref|XP_002890506.1| hypothetical protein ARALYDRAFT_472463 [Arabidopsis lyrata subsp. lyrata] gi|297336348|gb|EFH66765.1| hypothetical protein ARALYDRAFT_472463 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+THNMLS NIKGV NGFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1  MRLITHNMLSCNIKGVTNGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
          GYAELPE+SP++++L SD+ FL+
Sbjct: 61 GYAELPEDSPDAAVLKSDEPFLK 83

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970200|dbj|BAD43792.1| hypothetical protein [Arabidopsis thaliana] gi|51970254|dbj|BAD43819.1| hypothetical protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1  MRLITHNMLSCNIKGVTSGFPLRIEAGSVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
          GYAELPEESP++++L SD+ FL+
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLK 83

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395095|ref|NP_564163.1| Trm1.2-like protein [Arabidopsis thaliana] gi|47606185|sp|Q8LFJ5.1|T112A_ARATH RecName: Full=TRM112-like protein At1g22270 gi|21537034|gb|AAM61375.1| unknown [Arabidopsis thaliana] gi|30102552|gb|AAP21194.1| At1g22270 [Arabidopsis thaliana] gi|51968428|dbj|BAD42906.1| hypothetical protein [Arabidopsis thaliana] gi|51969448|dbj|BAD43416.1| hypothetical protein [Arabidopsis thaliana] gi|51969466|dbj|BAD43425.1| hypothetical protein [Arabidopsis thaliana] gi|51969790|dbj|BAD43587.1| hypothetical protein [Arabidopsis thaliana] gi|51970600|dbj|BAD43992.1| hypothetical protein [Arabidopsis thaliana] gi|51970692|dbj|BAD44038.1| hypothetical protein [Arabidopsis thaliana] gi|110743745|dbj|BAE99709.1| hypothetical protein [Arabidopsis thaliana] gi|332192097|gb|AEE30218.1| Trm1.2-like protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1  MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61 GYAELPEESPESSMLDSDD-FLR 82
          GYAELPEESP++++L SD+ FL+
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLK 83

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448337|ref|XP_003594444.1| TRM112-like protein [Medicago truncatula] gi|355483492|gb|AES64695.1| TRM112-like protein [Medicago truncatula]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 69/81 (85%), Gaps = 1/81 (1%)

Query: 1  MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
          MRLLTHNMLSSNIKGV NGFPL IE EKV+EK V+ N DFLK +F KIEW+A V+ASR M
Sbjct: 1  MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKNVEMNGDFLKKMFEKIEWKAFVEASRGM 60

Query: 61 GYAELPEESPESSMLDSDDFL 81
          GY ELPEE+ +SSMLDS++FL
Sbjct: 61 GYTELPEEA-DSSMLDSNEFL 80

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082123|ref|XP_002306574.1| predicted protein [Populus trichocarpa] gi|222856023|gb|EEE93570.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 71/75 (94%), Gaps = 1/75 (1%)

Query: 8  MLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPE 67
          MLSSNIKGV+NGFPL IEVE+V+EKQVDFNPDF+KN+FPK+EW+ALV  +R++GYAELPE
Sbjct: 1  MLSSNIKGVSNGFPLRIEVEQVLEKQVDFNPDFVKNLFPKLEWKALVDGARTLGYAELPE 60

Query: 68 ESPESSMLDSDDFLR 82
          E+ +SSML+S++FLR
Sbjct: 61 EA-DSSMLESEEFLR 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2196536	124	AT1G22270 "AT1G22270" [Arabido	0.768	0.508	0.714	8e-21
TAIR|locus:2194724	124	AT1G78190 "AT1G78190" [Arabido	0.756	0.5	0.677	4.6e-18
RGD|1309710	125	Trmt112 "tRNA methyltransferas	0.768	0.504	0.5	5.6e-13
MGI|MGI:1914924	125	Trmt112 "tRNA methyltransferas	0.768	0.504	0.484	1.5e-12
UNIPROTKB|Q9UI30	125	TRMT112 "tRNA methyltransferas	0.731	0.48	0.442	5.8e-11
DICTYBASE|DDB_G0285489	128	DDB_G0285489 "TRM112 family pr	0.682	0.437	0.406	4.2e-08
FB|FBgn0037061	124	CG12975 [Drosophila melanogast	0.707	0.467	0.423	6.8e-08
ASPGD|ASPL0000030910	185	AN10721 [Emericella nidulans (	0.743	0.329	0.363	1e-06
POMBASE|SPAC31A2.02	126	trm112 "protein and tRNA methy	0.743	0.484	0.390	1.3e-06
CGD|CAL0006000	130	orf19.3585 [Candida albicans (	0.743	0.469	0.265	4.3e-06

TAIR|locus:2196536 AT1G22270 "AT1G22270" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
             MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct:     1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query:    61 GYA 63
             GYA
Sbjct:    61 GYA 63

GO:0003674 "molecular_function" evidence=ND

GO:0035265 "organ growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2194724 AT1G78190 "AT1G78190" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/62 (67%), Positives = 49/62 (79%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
             MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM
Sbjct:     1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query:    61 GY 62
              Y
Sbjct:    61 EY 62

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1309710 Trmt112 "tRNA methyltransferase 11-2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 32/64 (50%), Positives = 47/64 (73%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW ALVQA+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPDFVARMIPKVEWAALVQAADT 60

Query:    60 MGYA 63
             +  A
Sbjct:    61 LNLA 64

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

MGI|MGI:1914924 Trmt112 "tRNA methyltransferase 11-2" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query:    60 MGYA 63
             +  A
Sbjct:    61 LNLA 64

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|Q9UI30 TRMT112 "tRNA methyltransferase 112 homolog" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 27/61 (44%), Positives = 46/61 (75%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60

Query:    60 M 60
             +
Sbjct:    61 L 61

GO:0005515 "protein binding" evidence=IPI

GO:0018364 "peptidyl-glutamine methylation" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

DICTYBASE|DDB_G0285489 DDB_G0285489 "TRM112 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 24/59 (40%), Positives = 41/59 (69%)

Query:     1 MRLLTHNMLSSNIKG-VANGFPLLIE-VEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
             M++LTHNM++   K  +  GFPL +E  E+++ +Q +FN +F KNI+PK++W  + + S
Sbjct:     1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQ-EFNYEFTKNIYPKLDWLGIAEIS 58

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037061 CG12975 [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:     1 MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASR 58
             M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++
Sbjct:     1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQ 59

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000030910 AN10721 [Emericella nidulans (taxid:162425)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query:     1 MRLLTHNMLSSNIK---GVANGFPLLI-EVEKVIEKQVDFNPDFLKNIFPKIEWQALVQA 56
             M+LLT N L+  +K   G    FPL   +VE  ++ +VDF P+F++NI P+++W+AL + 
Sbjct:     1 MKLLTANFLTCAVKACKGSPAAFPLHFRDVELELQ-EVDFQPEFIRNIIPRVDWEALHRM 59

Query:    57 SRSMGY 62
                + +
Sbjct:    60 GTELNF 65

GO:0018364 "peptidyl-glutamine methylation" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

GO:0070476 "rRNA (guanine-N7)-methylation" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0016435 "rRNA (guanine) methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0043528 "tRNA (m2G10) methyltransferase complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0035657 "eRF1 methyltransferase complex" evidence=IEA

POMBASE|SPAC31A2.02 trm112 "protein and tRNA methyltransferase regulatory subunit Trm112 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 25/64 (39%), Positives = 41/64 (64%)

Query:     1 MRLLTHNMLS-SNIKGVAN--GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
             M+LLT N L+ SN K  ++   FPL +   K+  +Q++  P+FL  I P+I+W AL++ +
Sbjct:     1 MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60

Query:    58 RSMG 61
             R +G
Sbjct:    61 RQLG 64

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0030234 "enzyme regulator activity" evidence=ISO

GO:0030488 "tRNA methylation" evidence=ISO

GO:0035657 "eRF1 methyltransferase complex" evidence=ISO

GO:0043528 "tRNA (m2G10) methyltransferase complex" evidence=ISO

CGD|CAL0006000 orf19.3585 [Candida albicans (taxid:5476)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 17/64 (26%), Positives = 40/64 (62%)

Query:     1 MRLLTHNMLSSNIKGVANG---FPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
             M+ LT N +   +K   +    FPL  E  ++++++ D+NP+F+ ++  +++W A++Q +
Sbjct:     1 MKFLTTNFVKCAVKSCQSSLDSFPLKYEECQLVQEEQDYNPEFIVHMLDRLDWNAIIQVA 60

Query:    58 RSMG 61
             + +G
Sbjct:    61 KDLG 64

GO:0005730 "nucleolus" evidence=IEA

GO:0043528 "tRNA (m2G10) methyltransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0035657 "eRF1 methyltransferase complex" evidence=IEA

GO:0004809 "tRNA (guanine-N2-)-methyltransferase activity" evidence=IEA

GO:0016435 "rRNA (guanine) methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0018364 "peptidyl-glutamine methylation" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

GO:0070476 "rRNA (guanine-N7)-methylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFJ5	T112A_ARATH	No assigned EC number	0.6867	1.0	0.6612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG1088	124	consensus Uncharacterized conserved protein [Funct	100.0
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	98.72

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.9e-37  Score=207.44  Aligned_cols=81  Identities=53%  Similarity=1.033  Sum_probs=77.0

Q ss_pred             Ccccchhhhhhccccccc-CCCceeeeeeEEEeccCCCHHHHHhhcccccHHHHHHHHHhcCCCCCCCCCCCCCCCC-Cc
Q 047023            1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSMLD-SD   78 (82)
Q Consensus         1 MrLlThN~L~c~~k~c~~-gfPL~i~~~~~~~~e~efN~eFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p~~~~~~-de   78 (82)
                      |||+|||||+|++|+|.+ ||||++++.+++++++||||+|+.+|+|||||+||+.||+++|..+||++.| +++.+ ||
T Consensus         1 MKLlthNfLsc~~k~~~s~gFPL~l~~~k~~~~~vEFnPdFl~~m~~kidW~All~~A~~l~~~~lP~~kP-e~~~e~de   79 (124)
T KOG1088|consen    1 MKLLTHNFLSCSVKKVVSVGFPLRLVAKKVVEKEVEFNPDFLIRMLPKIDWSALLEAARSLGNTELPDEKP-EKLVEDDE   79 (124)
T ss_pred             CceeeeehhhheeecccccCCceEEEeeEEEEEeeecChHHHHHhhhhccHHHHHHHHHHhccccCCCCCc-cccccccH
Confidence            999999999999999985 9999999999999999999999999999999999999999999999999999 77766 77


Q ss_pred             hhhC
Q 047023           79 DFLR   82 (82)
Q Consensus        79 efL~   82 (82)
                      +|||
T Consensus        80 ~~Lr   83 (124)
T KOG1088|consen   80 EFLR   83 (124)
T ss_pred             HHHH
Confidence            7885

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=98.72  E-value=2.2e-09  Score=65.10  Aligned_cols=41  Identities=41%  Similarity=0.884  Sum_probs=33.4

Q ss_pred             cccchhhhhhcccccccCCCceeeeeeEEEeccCCCHHHHHhhcccccHHHHHHHHHhcCCCCCCCCCCCCCC
Q 047023            2 RLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSM   74 (82)
Q Consensus         2 rLlThN~L~c~~k~c~~gfPL~i~~~~~~~~e~efN~eFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p~~~~   74 (82)
                      |++|||||+|++  |+ | ||                          ||+||+++|+ +|..++|+..+ +++
T Consensus         1 k~~llniL~Cp~--ck-~-pL--------------------------~~~~l~~~~~-~~~~~lp~~~~-~~~   41 (68)
T PF03966_consen    1 KLLLLNILACPV--CK-G-PL--------------------------DWEALVETAQ-LGLSELPKELP-EDY   41 (68)
T ss_dssp             BGGGCGTBB-TT--TS-S-BE--------------------------HHHHHHHHHH-CCCCHCHHCHH-CHC
T ss_pred             ChhHHhhhcCCC--CC-C-cc--------------------------hHHHHHHHHH-hCcccCCCCCc-cch
Confidence            689999999993  54 3 88                          9999999999 99988888877 543

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
2j6a_A	141	Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc		9e-05

>pdb|2J6A|A Chain A, Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc Finger Protein From The Erf1 Methyltransferase Complex Length = 141

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 1  MRLLTHNMLSSNIKGVA---NGFPLLIEVEK---VIEKQVDFNPDFLKNIFPKIEWQALV 54
          M+ LT N L  ++K      + FPL  +  K   V ++ ++FNP+FL NI  +++W A++
Sbjct: 1  MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60
Query: 55 QASRSMG 61
            +  +G
Sbjct: 61 TVAAELG 67
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
2j6a_A	141	Protein TRM112; translation termination, methyltra	4e-25

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} Length = 141

 Score = 89.8 bits (222), Expect = 4e-25
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 1  MRLLTHNMLSSNIKGV---ANGFPLLI---EVEKVIEKQVDFNPDFLKNIFPKIEWQALV 54
          M+ LT N L  ++K      + FPL     + + V ++ ++FNP+FL NI  +++W A++
Sbjct: 1  MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60

Query: 55 QASRSMGYAELPEESPES------SMLDSDDFLR 82
            +  +G   LP   P           D    L 
Sbjct: 61 TVAAELGNNALPPTKPSFPSSIQELTDDDMAILN 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
2j6a_A	141	Protein TRM112; translation termination, methyltra	100.0
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	100.0

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=216.66  Aligned_cols=81  Identities=33%  Similarity=0.690  Sum_probs=76.4

Q ss_pred             Ccccchhhhhhcccccc---cCCCcee--eeeeEEEecc-CCCHHHHHhhcccccHHHHHHHHHhcCCCCCCCCCCCCCC
Q 047023            1 MRLLTHNMLSSNIKGVA---NGFPLLI--EVEKVIEKQV-DFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSM   74 (82)
Q Consensus         1 MrLlThN~L~c~~k~c~---~gfPL~i--~~~~~~~~e~-efN~eFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p~~~~   74 (82)
                      |||||||||+|++|||+   +||||++  +++++++.|+ ||||+||++|||||||+||++||++||.++||+++| +++
T Consensus         1 MkLlThN~L~c~vk~c~~~~~gFPL~~~~~~~~~~~~e~~efnpeFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p-e~~   79 (141)
T 2j6a_A            1 MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVLTVAAELGNNALPPTKP-SFP   79 (141)
T ss_dssp             CBGGGGGTCCCCCGGGTTCTTSSSCEECTTTCEEEECTTSCCCHHHHHHHHHHSCHHHHHHHHHHTTCCCSCSSCC-CCC
T ss_pred             CceeehhhhhcccccCCcCCCCcceeeccccceeEEcccccCCHHHHHHHHhhcCHHHHHHHHHHhCCccCCCcCC-ccc
Confidence            99999999999999998   8999999  9999999999 999999999999999999999999999999999999 775


Q ss_pred             -----CCCch--hhC
Q 047023           75 -----LDSDD--FLR   82 (82)
Q Consensus        75 -----~~dee--fL~   82 (82)
                           ++||+  |||
T Consensus        80 ~~~~~~~dee~~~Lk   94 (141)
T 2j6a_A           80 SSIQELTDDDMAILN   94 (141)
T ss_dssp             SSGGGCCHHHHHHHH
T ss_pred             ccccccCchHHHHHH
Confidence                 56776  875

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.4e-36  Score=203.61  Aligned_cols=79  Identities=24%  Similarity=0.284  Sum_probs=74.6

Q ss_pred             CcccchhhhhhcccccccCCCceeeeeeEEEeccCCC--HHHHHhhcc---cccHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 047023            1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFN--PDFLKNIFP---KIEWQALVQASRSMGYAELPEESPESSML   75 (82)
Q Consensus         1 MrLlThN~L~c~~k~c~~gfPL~i~~~~~~~~e~efN--~eFi~~mlp---kldW~aL~~aA~~lg~~~LP~~~p~~~~~   75 (82)
                      |||||||||+|++|||++|  |+++++++++.|+|||  |+||++|||   ||||+||++||++||+++||+++| ++++
T Consensus         1 MkLlThN~L~c~vk~~~~g--L~~~~~~~~~~e~efn~~~eFl~~mlp~~~kldW~aL~~aA~~lg~~~LP~~~p-~~~~   77 (125)
T 3q87_A            1 MKPFLLGLLKCKRCSFMTK--LILECEKAESNDVDTDDVKIFNKHMFTENGGERLKSLVNSLRDFHGRELSEQDI-SSFV   77 (125)
T ss_dssp             CCGGGGGTBCCSSCSSCCC--EEEEEEEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHHTTTCCSSCCCHHHH-HHHH
T ss_pred             CcccccchhhhcccccCCC--ceEEeeEEEEecccCCccHHHHHHHcCCccccCHHHHHHHHHHhCCccCCCCCC-Cccc
Confidence            9999999999999999988  9999999999999999  999999999   999999999999999988999999 8888


Q ss_pred             CCchhhC
Q 047023           76 DSDDFLR   82 (82)
Q Consensus        76 ~deefL~   82 (82)
                      +||+|||
T Consensus        78 ~deefLr   84 (125)
T 3q87_A           78 ENPGDDE   84 (125)
T ss_dssp             HCTTCCH
T ss_pred             CCHHHHH
Confidence            9999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00