Citrus Sinensis ID: 047026

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTSSFMI
cccccccccccccccEEEEEEccccccccEEEccccEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccEEEEccEEEEEcccccccccEEEcccccccccccccEEEEEEcccEEEEEEEccccccccccccEEcccccccccEEEEEEccccccccEEEccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEccccccccccccccccEEEEEEcccccEEEccEEcEEEEEEEEEccEEEEEEEEEEEEEEcccEEEEccEEEEEccccccEEEEccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEEccccccccEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEEccccccEEEEEEccccccccEEEEcccccccEEEEcEEEEEEEEEEEEEEcccEEEcccEEEEEEEEccccccEEEEEEEEEEcccccccc
cccEEEEccccccccEEEEEEccccccccEEEEEcEEEEEEEEcccEEEEEEEEccccccccccccEcEEEEEEEEccccEEEEEEEEccccccccccccHEEEEEEccccccccEEEccccccccccccccccccccEEEcccEEEEcccccccccccccccEEEccccccccEEEEEcccccEEEEEEccccccccccccHcccccccccEEHHHEEcccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEccccEEcccEEEcccccccEEEEEEcccccccccccccccccccccccccccHHHHHHcHHHHHHHHcccccEEEEEcccccccccccEEEEccccccccccccEEEEEEcccccccccEEEEEEEHcccccccEEEcccccccccccccccccccEEEEccEcccEEEEEEEEcHHHHEccccEEEEEEEcccccccEEEEEEEEEccccccEEc
mdnlldlkssessrgywdinwnlpegqdryqllnggeysvinmsndsvevsfrssydpsiqstklplsvDIRYILrsgvsgfhcysiyerppgcrafDLAQTRLAFKLRRDKFHYMAITDAKqrimplpedllpgrgkqlivpesvllvnpinpdlkgevddkyqysmdnkdgglhgwissgpiigfwiifpshefrnggptkqnltvhtgptclamfhgthyIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQeaawpydfvsspyyltanergsatgrffvqdkfvssslipakyAYIGlssarteggwqteskDYQFWVQtdskgnftvknvvpgvyglhgwvpgfiGDYLDKALVTIsagsqtelgnltyvplrngptvweigfpdrtalgcyvpdvnpmyvnklflnspekyrqyglwdrytdvhpesdqfftvgvndpkkdwffahvdrrgpdnkylpttwtIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLgmdntvcrhgihgLYQLFSIHVSSLLLikgdnsmflvqsrsgdpvcgvlydylrleaptssfmi
mdnlldlkssessrgywDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSydpsiqstklplsVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVdrrgpdnkylpttWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLrleaptssfmi
MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTSSFMI
**************GYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSF*******IQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLE********
MDNLLD*KSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTS****
MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTSSFMI
MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTSSFMI
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MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTSSFMI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query596 2.2.26 [Sep-21-2011]
Q0C7K7660 Probable rhamnogalacturon N/A no 0.773 0.698 0.251 6e-18
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.669 0.690 0.240 7e-18
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.676 0.610 0.241 2e-15
A5ABH4706 Probable rhamnogalacturon yes no 0.766 0.647 0.231 3e-14
B8N5T6663 Probable rhamnogalacturon N/A no 0.773 0.695 0.231 4e-13
Q4WR79658 Probable rhamnogalacturon no no 0.786 0.712 0.246 3e-12
B0XPA2658 Probable rhamnogalacturon N/A no 0.786 0.712 0.246 3e-12
A1D144658 Probable rhamnogalacturon N/A no 0.691 0.626 0.249 4e-12
Q5B5P1 1041 Probable rhamnogalacturon no no 0.469 0.268 0.260 3e-11
Q2U5P7695 Probable rhamnogalacturon no no 0.645 0.553 0.238 1e-10
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function desciption
 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 226/540 (41%), Gaps = 79/540 (14%)

Query: 73  YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
           + LR G +G H +S      E  P  R  +L + R  F+   D + ++  T ++ +  PL
Sbjct: 123 WFLRDGETGLHMFSRLAYYNETTPFLR--NLQEFRTLFRPNTDLWTHL--TSSELQTAPL 178

Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGW-----I 179
           P D     GKQ++V ++    N    D       E   KY +S   +D  +HG       
Sbjct: 179 PSD--EAVGKQVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNAWRDNNVHGLYADGST 236

Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
           S+G   G W++  + +   GGP   +LTV           G  Y  N I++ H  EG   
Sbjct: 237 SNGTTFGAWLVMNTKDTYYGGPLHSDLTVD----------GIVY--NYIVSNHHGEGTPN 284

Query: 236 --EAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YLT 288
               + + FGP F YL +   +S    L  +A+    L + +W  +F  S       Y+ 
Sbjct: 285 ITNGFDRTFGPQF-YLFNGGGSSSLNELRSEAES---LADPSWNVEFYDSIAKHVVGYVP 340

Query: 289 ANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNF 348
           +++RGS  G    Q K    +  P     +     +       + + YQ+WV+ D+ G F
Sbjct: 341 SSKRGSVQG----QIKLPRGATRPIAILTVDGQYFQDN---SVDPRSYQYWVEMDANGKF 393

Query: 349 TVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPD 408
            + +VV G Y L  +  G  GDY+   +     G +T   N ++ P   G  VW +G PD
Sbjct: 394 QLDHVVEGKYRLTVYADGIFGDYVRDGVQV--RGRKTTRINDSWQPESAGVEVWRLGTPD 451

Query: 409 RTALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDW 466
           +++ G ++  V  +P +     L+ PE    +G +D   D     +  +T+G +DP  D+
Sbjct: 452 KSS-GEFLHGVARDPTHP----LHPPEYLIYWGAYDWQQDFPNGVN--YTIGSSDPATDF 504

Query: 467 FFAHVDRRG-----PDNKYLPT-TWTIKFHLDSI---IKGTYNLRLAIASATRSDLEIFV 517
              H    G     PD +Y  T  W I F L       + T  L + +A A  +     V
Sbjct: 505 NTVHWSVFGPTPDNPDVEYDTTHDWAINFSLTKKQLQKRKTATLTIQLAGAKTASGNTDV 564

Query: 518 NYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPV 577
              D+ +      NL +++ + +     L  L   + SS  +++   S + V+SR   P 
Sbjct: 565 YKPDEPY-----TNLALESYINQQE-EPLTMLIGFNQSSSCIVRSAVSCYQVRSRMTFPA 618
Pectinolytic enzymes consist of four classes of enzymes: pectine lyase, polygalacturonase, pectin methylesterase and rhamnogalacturonase. Degrades the rhamnogalacturonan I (RG-I) backbone of pectin.
Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function description
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
224115782650 predicted protein [Populus trichocarpa] 0.991 0.909 0.793 0.0
359483426618 PREDICTED: probable rhamnogalacturonate 0.994 0.959 0.774 0.0
449433966522 PREDICTED: probable rhamnogalacturonate 0.870 0.994 0.740 0.0
168034453631 predicted protein [Physcomitrella patens 0.988 0.933 0.515 0.0
168021660632 predicted protein [Physcomitrella patens 0.994 0.938 0.525 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 0.993 0.920 0.509 0.0
356515685643 PREDICTED: probable rhamnogalacturonate 0.994 0.922 0.494 1e-178
356510088643 PREDICTED: rhamnogalacturonate lyase B-l 0.994 0.922 0.494 1e-178
302142095656 unnamed protein product [Vitis vinifera] 0.993 0.902 0.498 1e-177
357142216660 PREDICTED: rhamnogalacturonate lyase-lik 0.989 0.893 0.501 1e-177
>gi|224115782|ref|XP_002317123.1| predicted protein [Populus trichocarpa] gi|222860188|gb|EEE97735.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/592 (79%), Positives = 533/592 (90%), Gaps = 1/592 (0%)

Query: 1   MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSI 60
           MDN+LDL+S+ES+RGYWD+NWNLP G+DRYQ +NG EYSVI  SND +E+SFRS+YDPS 
Sbjct: 41  MDNILDLQSNESNRGYWDMNWNLPGGKDRYQSVNGAEYSVIYNSNDKLEISFRSTYDPSN 100

Query: 61  QSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITD 120
           + TKLPLS+DIRYIL SGVSGFHCY+IYERP G  AFDL QTR+ FKLRRDKFHYMAI+D
Sbjct: 101 KGTKLPLSIDIRYILNSGVSGFHCYAIYERPAGSPAFDLVQTRMVFKLRRDKFHYMAISD 160

Query: 121 AKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWIS 180
            KQR+MP+PEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGG+HGWI 
Sbjct: 161 EKQRVMPMPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWIG 220

Query: 181 SGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRK 240
           SGP+IGFW+IFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIG++I+A FQEGEAWRK
Sbjct: 221 SGPVIGFWVIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGDDIVAQFQEGEAWRK 280

Query: 241 VFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFF 300
           VFGP FVYLNSTS+ S AYNLWIDAKKQRLL+EA WPY+FVSSPYYL A ERGSAT R F
Sbjct: 281 VFGPFFVYLNSTSNVSDAYNLWIDAKKQRLLEEATWPYEFVSSPYYLNAKERGSATARLF 340

Query: 301 VQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGL 360
           VQ++FVS SLIPAK AY+GLS+AR +G WQTESKDYQFWVQTDS GNFT+KNV+PGVYG 
Sbjct: 341 VQERFVSESLIPAKNAYVGLSTARAQGAWQTESKDYQFWVQTDSNGNFTIKNVIPGVYGF 400

Query: 361 HGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVN 420
           HGWVPGFIGD+LD ALVTIS GS+T+LGNLTYVPLR+GPT+WEIGFPDRT +G YVPD N
Sbjct: 401 HGWVPGFIGDFLDNALVTISEGSETQLGNLTYVPLRDGPTIWEIGFPDRTGIGFYVPDAN 460

Query: 421 PMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDNKY 480
           PMYVNKLF+NSPEK+RQYGLWDRYTDVHPE DQ FT+G++DPKK+WFFAHVDRR  D KY
Sbjct: 461 PMYVNKLFVNSPEKFRQYGLWDRYTDVHPEYDQTFTIGISDPKKNWFFAHVDRRVAD-KY 519

Query: 481 LPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCR 540
           +P+TWTIKF L+SI  G Y LRLAIASA RSDL++++N +D+ H+V+Q MNLG +N VCR
Sbjct: 520 IPSTWTIKFLLNSIKNGIYKLRLAIASANRSDLQVYLNDMDKEHMVFQVMNLGAENAVCR 579

Query: 541 HGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPTS 592
           HGIHGLY+LFSI + S LL+ GDNSMFLVQ+R GD +CG+LYDYLRLEAP S
Sbjct: 580 HGIHGLYRLFSIDIPSSLLLNGDNSMFLVQARGGDALCGILYDYLRLEAPAS 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483426|ref|XP_003632957.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Vitis vinifera] gi|302144126|emb|CBI23231.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433966|ref|XP_004134767.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Cucumis sativus] gi|449479483|ref|XP_004155611.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|168034453|ref|XP_001769727.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679076|gb|EDQ65528.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|168021660|ref|XP_001763359.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685494|gb|EDQ71889.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357142216|ref|XP_003572497.1| PREDICTED: rhamnogalacturonate lyase-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.988 0.954 0.495 7.6e-167
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.991 0.875 0.472 1e-162
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.989 0.913 0.466 3e-156
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.981 0.864 0.479 2.1e-155
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.991 0.936 0.447 3.2e-152
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.971 0.853 0.461 3.4e-148
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.968 0.865 0.455 7.5e-144
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.359 0.862 0.384 3.3e-40
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.691 0.624 0.252 5.9e-18
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.691 0.624 0.252 5.9e-18
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1623 (576.4 bits), Expect = 7.6e-167, P = 7.6e-167
 Identities = 295/595 (49%), Positives = 406/595 (68%)

Query:     1 MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSI 60
             +DNLL++ + E +RGYWD+ W        + ++ G  + VI  + + +E+SF   +DPS 
Sbjct:    25 IDNLLEVLNEEVNRGYWDLVWGGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQ 84

Query:    61 QSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITD 120
             +   +PL++D R+++ SG SGF+ Y+IYE      AF LA+TR+AFKLR++KFHYMA+TD
Sbjct:    85 EGKAVPLNIDKRFVMLSGSSGFYTYAIYEHLKEWPAFSLAETRIAFKLRKEKFHYMAVTD 144

Query:   121 AKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWI- 179
              +QR MPLP+D LP RG+ L  PE+VLLVNP+    KGEVDDKYQYS +NKD  +HGWI 
Sbjct:   145 DRQRFMPLPDDRLPDRGQALAYPEAVLLVNPLESQFKGEVDDKYQYSCENKDITVHGWIC 204

Query:   180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWR 239
             +  P +GFW+I PSHE+R GGP KQNLT H GPT LA+F   HY G +++  F EGEAW+
Sbjct:   205 TEQPSVGFWLITPSHEYRTGGPQKQNLTSHVGPTALAVFISAHYTGEDLVPKFSEGEAWK 264

Query:   240 KVFGPIFVYLNS-TSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGR 298
             KVFGP+FVYLNS T D +    LW DAK Q  ++  +WPY F +S  Y+   +RG+  GR
Sbjct:   265 KVFGPVFVYLNSSTDDDNDPLWLWQDAKSQMNVEAESWPYSFPASDDYVKTEQRGNVVGR 324

Query:   299 FFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVY 358
               VQD++V    I A   Y+GL+     G WQ E K+YQFW +TD +G F +  + PG Y
Sbjct:   325 LLVQDRYVDKDFIAANRGYVGLAVPGAAGSWQRECKEYQFWTRTDEEGFFYISGIRPGQY 384

Query:   359 GLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPD 418
              L+ W+PGFIGDY    ++TI++G    + +L Y P RNG T+WEIGFPDR+A   YVPD
Sbjct:   385 NLYAWIPGFIGDYKYDDVITITSGCYIYVEDLVYQPPRNGATLWEIGFPDRSAAEFYVPD 444

Query:   419 VNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPDN 478
              NP Y+N L+ N P+++RQYGLW+RY +++P+ D  + VG +D +KDWF+A V R+  DN
Sbjct:   445 PNPKYINNLYQNHPDRFRQYGLWERYAELYPDKDLVYVVGSSDYRKDWFYAQVTRK-KDN 503

Query:   479 K-YLPTTWTIKFHLDSIIKG-TYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDN 536
             K Y  TTW IKF L +I K  +Y LR+AIASAT S+L+I VN  +   +    + +G DN
Sbjct:   504 KTYQGTTWQIKFELKNIDKNHSYTLRVAIASATFSELQIRVNNANASPMFTSGL-IGRDN 562

Query:   537 TVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPVCGVLYDYLRLEAPT 591
             ++ RHGIHGLY LF++ V+   L++G+N++FL Q RS  P  G++YDY+R EAP+
Sbjct:   563 SIARHGIHGLYWLFNVEVAGSKLLEGENTLFLTQPRSTSPFQGIMYDYIRFEAPS 617
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 3e-57
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 1e-54
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 1e-35
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 2e-27
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information 
 Score =  192 bits (491), Expect = 3e-57
 Identities = 77/257 (29%), Positives = 110/257 (42%), Gaps = 27/257 (10%)

Query: 3   NLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQ- 61
            LL+  + +  RGY D+   +  G ++      G+ S I   +        +     IQ 
Sbjct: 35  GLLENDNGKGDRGYLDLVSIVYGGTEQT----PGKLSHIE--SGLGATVSATQSGDYIQI 88

Query: 62  STKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDA 121
           S       ++ Y++R G  G + Y++   P       L + R  F+L  D F   AI+D 
Sbjct: 89  SFSRTFETELHYVVRKGEPGIYMYTVATHPAP--EPSLGELRTVFRLNPDLFPNGAISD- 145

Query: 122 KQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGLHGWISS 181
            +   P    L           E      P+     GE D KY YS  N+D  +HG    
Sbjct: 146 DRGDPPPGTALEGK--------EVQDDTFPLPD---GEYDSKYYYSGYNRDNKVHGVYGD 194

Query: 182 GPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKV 241
           G  +G W+I PS E+ +GGP KQ+LTVH GP  L  F+  HY G +        E WRK+
Sbjct: 195 G--VGAWMIMPSREYSSGGPLKQDLTVHGGPILLNYFNSGHYGGKD----LNATEGWRKL 248

Query: 242 FGPIFVYLNSTSDASKA 258
           FGP  +Y NS    S  
Sbjct: 249 FGPYLLYFNSGGAPSTL 265

The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. Length = 265
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 596
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.86
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.83
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.51
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 98.01
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 98.0
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 98.0
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.77
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.63
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.59
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.26
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.35
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.45
PRK15036137 hydroxyisourate hydrolase; Provisional 95.29
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 94.63
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.59
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 93.59
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 93.41
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 93.08
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 92.56
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 92.3
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 91.99
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 91.11
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 90.89
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 89.54
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 89.3
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 89.09
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 88.86
smart00606129 CBD_IV Cellulose Binding Domain Type IV. 88.81
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 88.78
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 88.09
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 87.4
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 87.16
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 85.97
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 85.68
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 84.62
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 83.82
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 83.12
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 82.57
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 81.67
PF10670215 DUF4198: Domain of unknown function (DUF4198) 81.52
PRK11114 756 cellulose synthase regulator protein; Provisional 81.51
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 81.47
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-49  Score=388.21  Aligned_cols=160  Identities=53%  Similarity=1.014  Sum_probs=157.7

Q ss_pred             CCCccCCCCCCCCccEEEEEecCCCCccceeeccCceEEEEeccCCEEEEEEEeecCCCCCCCccccceeEEEEEecCcc
Q 047026            1 MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVS   80 (596)
Q Consensus         1 ~~~~l~~~~~~~~~gY~d~~w~~~~~~~~~~~~~gt~~~vi~~~~~~i~vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~s   80 (596)
                      |+|||+..|++.+|||||++|+.+|.+++|++++||+|+||++++++|||||+++|+||++++.+||+||+||||++|+|
T Consensus        44 i~NLle~~n~e~nrGYwD~~W~~~G~~~~~~~~~gt~f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~S  123 (203)
T PF06045_consen   44 IDNLLEVANKENNRGYWDLVWNEPGSKGKFDRIKGTEFSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSS  123 (203)
T ss_pred             EehhhcccCcccCCceEEEecccCCccccccccCCcEEEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCc
Confidence            58999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeecCCCCCCCCCCCceEEEEEcCCCCCccceecccccccCCCCCCCCCCCcceeeeeceEEeecCCCCCCCceE
Q 047026           81 GFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEV  160 (596)
Q Consensus        81 giY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~~~~~~~~l~~~eav~l~~~~~~~~~G~~  160 (596)
                      |||+|+|++|+++||+++|+|+|+||||++++|++||++|+||+.||+|+||++++|++|+|||||+|++|+||+++|||
T Consensus       124 GfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  124 GFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             eEEEEEEEecCCCCCCcccceeEEEEECCccccceEEecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>smart00606 CBD_IV Cellulose Binding Domain Type IV Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>PRK11114 cellulose synthase regulator protein; Provisional Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-101
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  316 bits (812), Expect = e-101
 Identities = 97/563 (17%), Positives = 175/563 (31%), Gaps = 101/563 (17%)

Query: 31  QLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYER 90
           +L    + S I     S  V+   S D  I+ T +  ++    ++ +G    H  +    
Sbjct: 41  ELQYSSQGSHIGSGLGSATVTATQSGD-YIKVTCVTDTLTQYMVVHNGDPIIHMATYITA 99

Query: 91  PPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVN 150
            P      + + R   +L  D          ++    +            I    V LV 
Sbjct: 100 EP-----SIGELRFIARLNSDLL------PNEEPFGDVSTT----ADGTAIEGSDVFLVG 144

Query: 151 PINPDLKGEVDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHT 210
                   E   K+  S    D   H            +I   +E  +GGP  +++  + 
Sbjct: 145 -------SETRSKFYSSERFIDDQRHCIAGDA--HRVCMILNQYESSSGGPFHRDINSNN 195

Query: 211 GPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRL 270
           G +  A++   +        H Q       + GP  +Y + +   S      ID      
Sbjct: 196 GGSYNALYWYMNS------GHVQTESYRMGLHGPYSMYFSRSGTPST----SIDTSF--- 242

Query: 271 LQEAAWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQ 330
                  +  +    Y+ A+ RG   G                       + +  +    
Sbjct: 243 -------FADLDIKGYVAASGRGKVAGT-------------------ASGADSSMDWVVH 276

Query: 331 TESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNL 390
             +   Q+W  T S G+FT   + PG Y +  +   +    +  + VT+SAGS T     
Sbjct: 277 WYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYA---VATSSVTVSAGSTTTKN-- 331

Query: 391 TYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPE 450
               ++ G T+++IG  D    G              F N+  + R +    R       
Sbjct: 332 ISGSVKTGTTIFKIGEWDGQPTG--------------FRNAANQLRMHPSDSRM---SSW 374

Query: 451 SDQFFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATR 510
               +TVG +    D+  A                TIKF   S   G   LR+    +  
Sbjct: 375 GPLTYTVGSSAL-TDFPMAVFKSVN-------NPVTIKFTATSAQTGAATLRIGTTLSFA 426

Query: 511 SD-LEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLV 569
               +  +N                   V R    GL +++ + + S  ++ G N++ + 
Sbjct: 427 GGRPQATIN--SYTGSAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITIN 484

Query: 570 QSR--SGDPVC--GVLYDYLRLE 588
                SGD       ++D + L 
Sbjct: 485 VISGSSGDTYLSPNFIFDCVELF 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.92
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.82
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.78
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.72
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.61
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.51
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 96.5
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.21
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 96.17
2w3j_A145 Carbohydrate binding module; sugar-binding protein 96.06
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 96.06
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 95.34
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 94.65
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 93.13
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 91.23
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 90.98
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 89.48
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 89.02
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 88.24
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 88.07
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 87.71
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 87.23
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 86.87
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 86.33
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 85.85
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 84.53
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 83.07
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 82.66
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 82.45
1w9s_A142 BH0236 protein, BHCBM6; carbohydrate-binding modul 82.43
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 81.47
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 81.36
2v4v_A129 GH59 galactosidase; hydrolase, family 6 carbohydra 81.29
1uy4_A145 Endo-1,4-beta-xylanase A; carbohydrate-binding mod 80.96
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=1.2e-119  Score=989.66  Aligned_cols=458  Identities=19%  Similarity=0.263  Sum_probs=400.3

Q ss_pred             CCCccCCCCCCCCccEEEEEecCCCCccceeeccCceEEEEeccCCEEEEEEEeecCCCCCCCccccceeEEEEEecCcc
Q 047026            1 MDNLLDLKSSESSRGYWDINWNLPEGQDRYQLLNGGEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVS   80 (596)
Q Consensus         1 ~~~~l~~~~~~~~~gY~d~~w~~~~~~~~~~~~~gt~~~vi~~~~~~i~vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~s   80 (596)
                      +|+|+  .++++++|      +..|. ..        ++++. .+++|+|||++.            +||||||||+|++
T Consensus        40 ~e~~~--~~~~s~~g------sg~G~-~~--------~~~~~-~~~~i~vs~~~~------------~l~~~~v~~~g~s   89 (508)
T 1nkg_A           40 TELQY--SSQGSHIG------SGLGS-AT--------VTATQ-SGDYIKVTCVTD------------TLTQYMVVHNGDP   89 (508)
T ss_dssp             EECBC--SSSCBEET------TCCSS-CE--------EEEEE-ETTEEEEEEECS------------SEEEEEEEETTCC
T ss_pred             EEccc--cCCCcccc------cCCCc-ce--------EEEEe-cCCEEEEEEEeC------------CceEEEEEeCCCc
Confidence            35666  48888888      33322 23        33333 479999999983            8999999999999


Q ss_pred             eeEEEEeecCCCCCCCCCCCceEEEEEcCCCCCccceecccccccCCCCCCCCCCCcceeeeeceEEeecCCCCCCCceE
Q 047026           81 GFHCYSIYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEV  160 (596)
Q Consensus        81 giY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~~P~~~d~~~~~~~~l~~~eav~l~~~~~~~~~G~~  160 (596)
                      |||||+++++     +++|+|+|+|||||+++|++.      +++||+|+++   .|++ +++|+++..       +|++
T Consensus        90 g~Y~y~~~~~-----~~~lge~R~v~Rl~~~~f~~~------~r~~~~p~~~---~~~~-v~~~d~~~l-------~G~~  147 (508)
T 1nkg_A           90 IIHMATYITA-----EPSIGELRFIARLNSDLLPNE------EPFGDVSTTA---DGTA-IEGSDVFLV-------GSET  147 (508)
T ss_dssp             EEEEEEEESS-----CCTTSCEEEEEEECTTTCCEE------ETTGGGGCCT---TCEE-EETTTEEEE-------TTEE
T ss_pred             eEEEEEeecc-----CCCCCceEEEEEcChhhCCCc------cccCCCCccc---cCcE-eeeccceee-------CCEE
Confidence            9999999975     679999999999999999762      6889999875   5766 467765444       7999


Q ss_pred             eeceecccccccCceEEEEeeCCceEEEEEcCCCCcccCCcceecccccCCc---cEEEEEeecccccCceeeccccCcc
Q 047026          161 DDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGP---TCLAMFHGTHYIGNEILAHFQEGEA  237 (596)
Q Consensus       161 ~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~~s~E~~sGGPlkqdL~~h~g~---~~l~y~~s~Hy~g~~~~~~~~~Ge~  237 (596)
                      +||||||+++||++||||++  ++||||||+||+||++||||||||++|+|+   ++||||+|+|++++++    +.   
T Consensus       148 ~~KY~~s~~~~D~~vhG~~~--~~vG~w~I~~s~E~~sGGP~kqdL~~h~~~~~~~~~~y~~s~H~~t~~~----~~---  218 (508)
T 1nkg_A          148 RSKFYSSERFIDDQRHCIAG--DAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSGHVQTESY----RM---  218 (508)
T ss_dssp             EEGGGGCCBGGGCSEEEEEC--SSCEEEEECCCCTTCSSCTTCBCCCEEECSSCEEEEEEEECSTTCCSCC----CC---
T ss_pred             ccceeccccceecceEEEEC--CCeEEEEEcCCcccccCCCcchhhhccCCcccceeeeeEeecccccccc----cc---
Confidence            99999999999999999964  999999999999999999999999999999   8999999999887764    44   


Q ss_pred             cceeeceEEEEEcCCCCCcccchhHHHHHHHHHhhhccCCCcCCCC---CCCCCCCCceeEEEEEEeeecccccCCCCcc
Q 047026          238 WRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSS---PYYLTANERGSATGRFFVQDKFVSSSLIPAK  314 (596)
Q Consensus       238 w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~wpysf~~s---~~y~~~~~RGtVsG~v~~~D~~~~~~~~pa~  314 (596)
                        |||||||||||+|++++                 ++|||+|++|   ++|||+++||+|+|+|+  +       .|+.
T Consensus       219 --g~~GP~~~y~n~g~~~~-----------------~~wpysf~~s~~~~~y~~~~~RGtVsG~V~--G-------~~~~  270 (508)
T 1nkg_A          219 --GLHGPYSMYFSRSGTPS-----------------TSIDTSFFADLDIKGYVAASGRGKVAGTAS--G-------ADSS  270 (508)
T ss_dssp             --EEEEEEEEEEESSCCCC-----------------SCCCCGGGGGTTCTTCCCGGGCBEEEEEEE--S-------SCTT
T ss_pred             --cccccEEEEECCCCCCC-----------------CCCCCccccccCccCCcCcccccEEEEEEc--C-------ccCC
Confidence              79999999999999873                 3999999999   99999999999999987  2       3344


Q ss_pred             eeEEEEcCCCCCCCcccccccceeEEEECCccceEeCCccCCeeEEEEEEcceeeeEeeeeEEEEeCCCeeeecceEEee
Q 047026          315 YAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVP  394 (596)
Q Consensus       315 ~a~V~L~~~~~~g~wq~~~~~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~  394 (596)
                      ...|++        |  ++|+|||||+||++|+|+|++||||+|+|+||++|+   ...+..|+|+||++++++ |+|++
T Consensus       271 ~~avv~--------~--~~k~~qywt~td~~G~FtI~~V~pGtY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~  336 (508)
T 1nkg_A          271 MDWVVH--------W--YNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSV  336 (508)
T ss_dssp             SCEEEE--------E--ECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCC
T ss_pred             ceEEEE--------E--cCCCceeEEEECCCCcEEeCCcCCceEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEec
Confidence            443444        1  478999999999999999999999999999999987   366678999999999996 99987


Q ss_pred             CCCCCceEEEeccCCCCcceecCCCCcccccccccCCchhhhcccccccccccCCCCCeeEEeeccCCCCCeeEEEEeec
Q 047026          395 LRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRR  474 (596)
Q Consensus       395 ~~~g~~LweIG~~Drta~~F~~~d~~~~~~n~~~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~  474 (596)
                      + ++++|||||+|||+|.||++||+.+       .|||+|+||| +|+         ||+||||+|++ +|||||||+. 
T Consensus       337 ~-~g~~iW~IG~pDrta~eF~~~d~~~-------~~hp~~~r~~-~W~---------~l~ytVG~S~~-~Dw~ya~~~~-  396 (508)
T 1nkg_A          337 K-TGTTIFKIGEWDGQPTGFRNAANQL-------RMHPSDSRMS-SWG---------PLTYTVGSSAL-TDFPMAVFKS-  396 (508)
T ss_dssp             C-CCSEEEEEECSSSSCTTSBTHHHHT-------TSCTTCTTSC-CCC---------SCEEETTTSCG-GGSBSEEETT-
T ss_pred             C-CCCeeEEeeCCCCCchhhcCCCccc-------ccCcchhccc-ccC---------CeEEEeCcCch-hcCCeEEECC-
Confidence            6 7999999999999999999998422       3599999998 895         49999999999 7999999965 


Q ss_pred             CCCCCCCCccEEEEEEeCCCccceEEEEEEEecc-CCCeeEEEEcCccCCcccccccccCCCCeeeeeeEEEeeEEEEEE
Q 047026          475 GPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASA-TRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIH  553 (596)
Q Consensus       475 ~~~~~~~~~~w~I~F~L~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~p~~~~~~~~~d~~i~R~~~~G~~~~~~~~  553 (596)
                            .+++|+|+|+|+++|.+++||||+||+| +++++||+|||+...  ++.++.+++||||+||++||+|++++|+
T Consensus       397 ------~~~~w~I~F~l~~~~~~~~tLri~la~a~a~~~~qV~VN~~~~~--~~~~~~~~~~~~i~R~~~~G~~~~~~~~  468 (508)
T 1nkg_A          397 ------VNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQATINSYTGS--APAAPTNLDSRGVTRGAYRGLGEVYDVS  468 (508)
T ss_dssp             ------TTCCEEEEEEECGGGCSCEEEEEEEEEEETTCEEEEEETTEECC--CCCCCCCCCSCCGGGTCCCSCCCEEEEE
T ss_pred             ------CCCcEEEEEEcCcccCCceEEEEEehhhccCCCeEEEECCcCCc--CccccccCCCCeEEecceeeeeEEEEEE
Confidence                  3699999999999887899999999998 589999999998664  5578899999999999999999999999


Q ss_pred             eecCceeeeccEEEEEEeecCC--CCc--eEEEEEEEEec
Q 047026          554 VSSLLLIKGDNSMFLVQSRSGD--PVC--GVLYDYLRLEA  589 (596)
Q Consensus       554 ipa~~L~~G~NtI~l~~~~g~s--~~~--~vmyD~IrLe~  589 (596)
                      ||+++|++|+|+|+|+++++++  +|+  +|||||||||.
T Consensus       469 ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          469 IPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             ECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             EcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            9999999999999999999986  587  99999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A* Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum} Back     alignment and structure
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 596
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 1e-38
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  137 bits (348), Expect = 1e-38
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%)

Query: 398 GPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTV 457
           G T+++IG  D    G                  P   R    W   T         +TV
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSS-WGPLT---------YTV 44

Query: 458 GVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRS-DLEIF 516
           G +    D+  A         K +    TIKF   S   G   LR+    +      +  
Sbjct: 45  GSSALT-DFPMAVF-------KSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQAT 96

Query: 517 VNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDP 576
           +N                   V R    GL +++ + + S  ++ G N++ +        
Sbjct: 97  IN--SYTGSAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSG 154

Query: 577 ----VCGVLYDYLRL 587
                   ++D + L
Sbjct: 155 DTYLSPNFIFDCVEL 169

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.5
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.58
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.3
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.91
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 95.48
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 93.38
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 93.01
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 92.67
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 92.43
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 92.27
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 91.9
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 91.77
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 91.54
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 90.74
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 90.51
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 89.8
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 89.32
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 84.24
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 82.25
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 81.38
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.2e-48  Score=371.10  Aligned_cols=164  Identities=20%  Similarity=0.275  Sum_probs=150.7

Q ss_pred             CCceEEEeccCCCCcceecCCCCcccccccccCCchhhhcccccccccccCCCCCeeEEeeccCCCCCeeEEEEeecCCC
Q 047026          398 GPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHVDRRGPD  477 (596)
Q Consensus       398 g~~LweIG~~Drta~~F~~~d~~~~~~n~~~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~  477 (596)
                      |++|||||+|||+|.||+++|       ++|.|||+|+|||+ |+      |   ++||||+|++ +|||||||++    
T Consensus         2 G~tiW~IG~pDrsa~eF~~~~-------~~~~~hp~~~R~~~-w~------~---l~ytVG~Sd~-~Dw~~a~~~~----   59 (171)
T d1nkga2           2 GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSS-WG------P---LTYTVGSSAL-TDFPMAVFKS----   59 (171)
T ss_dssp             CSEEEEEECSSSSCTTSBTHH-------HHTTSCTTCTTSCC-CC------S---CEEETTTSCG-GGSBSEEETT----
T ss_pred             CCeEEEccCCCCCchhhcCcc-------cchhcCccchhccC-CC------C---cEEEeCCCCc-ccccEEEEcC----
Confidence            789999999999999999984       68899999999994 75      5   9999999998 5999999976    


Q ss_pred             CCCCCccEEEEEEeCCCccceEEEEEEEecc-CCCeeEEEEcCccCCcccccccccCCCCeeeeeeEEEeeEEEEEEeec
Q 047026          478 NKYLPTTWTIKFHLDSIIKGTYNLRLAIASA-TRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSS  556 (596)
Q Consensus       478 ~~~~~~~w~I~F~L~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~p~~~~~~~~~d~~i~R~~~~G~~~~~~~~ipa  556 (596)
                         .+++|+|+|+|++++.++|||||+||+| +++++||+|||+...  .+.++.++++|||+||++||++++++|+||+
T Consensus        60 ---~~~~w~I~F~L~~~~~~~~tLrI~la~a~a~~~~qV~vN~~~~~--~~~~~~~~~~~~i~R~~~~g~~~~~~~~iPa  134 (171)
T d1nkga2          60 ---VNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQATINSYTGS--APAAPTNLDSRGVTRGAYRGLGEVYDVSIPS  134 (171)
T ss_dssp             ---TTCCEEEEEEECGGGCSCEEEEEEEEEEETTCEEEEEETTEECC--CCCCCCCCCSCCGGGTCCCSCCCEEEEEECT
T ss_pred             ---CCCCEEEEEEcCcccCCceEEEEehhcccCCCCeEEEECCcCCC--CccCCccCCCCceeccccccceEEEEEEech
Confidence               4789999999999888999999999998 678999999998765  5568888999999999999999999999999


Q ss_pred             CceeeeccEEEEEEeecCCC--Cc--eEEEEEEEEe
Q 047026          557 LLLIKGDNSMFLVQSRSGDP--VC--GVLYDYLRLE  588 (596)
Q Consensus       557 ~~L~~G~NtI~l~~~~g~s~--~~--~vmyD~IrLe  588 (596)
                      ++|++|+|+|+|++++|+++  |+  +||||||||.
T Consensus       135 ~~L~~G~Nti~lt~~~gs~~~~~L~p~~~yD~i~L~  170 (171)
T d1nkga2         135 GTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELF  170 (171)
T ss_dssp             TSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEE
T ss_pred             HHeEecceEEEEEecCCCCCccccCCceeeEEhhhh
Confidence            99999999999999999886  55  9999999995
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure