Citrus Sinensis ID: 047046

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRERVSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKESPSSTAPLMNAKVNQSN
ccccccccEEEEEEccEEEEEcHHHHccccHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccEEEEEccEEEEEccccccccHHHHHHHHEcccccccccEEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEEcHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccccccccEEcccc
lcssglpsdviIEVGEwsfhlhkfpllsrsgVLENLIAEFSGEAEKKCVlqfhdipggAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLamkacadpslfswpmsgrtdgqspggttlwngigvsskpqpvtedwwyedvsflrlpLYKRLILAVGMSSIKQESIAGSIIHYAKRhlpllgrqssfqngsrvepvsiisapsEEFQRTLLEELVELipdkkgvapTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDllipnmgysvetlYDIDCVQRILDHFMLinhdtidsncitdegqliggshsltpMTMVANLVDGylsevapdvnlklpkfqslasaipdyarplddgIYRAIDIFLkahpwltdsEREQICRLMDCQKLSLEASTHaaqnerlpLRVIVQVLFFEQLRLRTSIAGWffvsdnldnsqnpsgnlaltrndghaqarnsqdSIVAVDNMRERVSDLEKECMSMKQEIEKLVKAKgswnifskkfpfrlkskssglkvpktcnpkespsstaplmnakvnqsn
LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVElipdkkgvaPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASThaaqnerlplRVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAqarnsqdsivavdNMRERVSDLEKECMSMKQEIEKLVkakgswnifSKKFpfrlkskssglkvpktcnpkespsstaplmnakvnqsn
LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPtkfllrllrtslklQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRERVSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKESPSSTAPLMNAKVNQSN
********DVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPM***********TTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGR**********************FQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIAGWFFVSD*******************************************************KLVKAKGSWNIFSKKFPF************************************
LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLEN*I*************QFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSW*********************************WYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGR************************RTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHF**********************************LVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQL***************************************************************************************************************************
LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRERVSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSK*******************APLMNAKVNQSN
*C*SGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPM**************************VTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLL**********************EEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINH********************LTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIA***********************************SIVAVDNMRERVSDLEKECMSMKQEIEKLVKAKGSWN******P*************************************
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LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKESPSSTAPLMNAKVNQSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query589 2.2.26 [Sep-21-2011]
Q9LYW0592 BTB/POZ domain-containing yes no 0.930 0.925 0.598 0.0
Q9S9Q9665 BTB/POZ domain-containing no no 0.988 0.875 0.526 1e-179
Q9FNB3591 Putative BTB/POZ domain-c no no 0.910 0.906 0.584 1e-177
Q9FYC8651 BTB/POZ domain-containing no no 0.908 0.821 0.430 1e-122
Q94A73668 BTB/POZ domain-containing no no 0.915 0.806 0.404 1e-116
Q8LPQ3569 BTB/POZ domain-containing no no 0.860 0.891 0.390 1e-100
Q9FKB6614 BTB/POZ domain-containing no no 0.852 0.817 0.389 8e-98
Q5KS50762 Coleoptile phototropism p no no 0.789 0.610 0.374 2e-94
Q66GP0604 BTB/POZ domain-containing no no 0.758 0.740 0.380 7e-90
Q9C9Z7617 BTB/POZ domain-containing no no 0.853 0.815 0.350 3e-87
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function desciption
 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/596 (59%), Positives = 437/596 (73%), Gaps = 48/596 (8%)

Query: 1   LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAK 60
           LC++GL SDV IEVG+  FHLHKFPLLSRSG+LE LI E S +    CVL   +IPGG K
Sbjct: 21  LCTTGLVSDVTIEVGDMKFHLHKFPLLSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGK 80

Query: 61  AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKN-------------FLNEVFGNWTDS 107
            F LV KFCYGVKI+LTA NVVSLRCAAEYL M +             FLNEVFGNWTDS
Sbjct: 81  TFELVTKFCYGVKIELTAFNVVSLRCAAEYLEMTDNYGEGNLVGMTETFLNEVFGNWTDS 140

Query: 108 IRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTT----L 163
           I+AL+TCEEV+ +AE+LHI+SRC++SLA+KACADPSLF+WP+ G  +  S   T     L
Sbjct: 141 IKALQTCEEVIDYAEDLHIISRCVDSLAVKACADPSLFNWPVGGGKNATSGQNTEDESHL 200

Query: 164 WNGIGVSSKP-QPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHL 222
           WNGI  S K  Q   EDWW++D SFL LPL+KRLI A+    +K E+IA ++++Y ++H+
Sbjct: 201 WNGISASGKMLQHTGEDWWFDDASFLSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHV 260

Query: 223 PLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSL 282
           PL+ RQ +       E V     PSEE Q+T LEE+V L+P KKGV PTKFLLRLL+T++
Sbjct: 261 PLMNRQVNMD-----EQVIETPNPSEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQTAM 315

Query: 283 KLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDT 342
            L ASQS RE LE+RIG+QLDQAAL DLLIPNMGYS ETLYD++CV R+++ F+      
Sbjct: 316 VLHASQSSRENLERRIGNQLDQAALVDLLIPNMGYS-ETLYDVECVLRMIEQFVSSTEQA 374

Query: 343 --IDSNCITDEGQLI-GGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDY 399
             + S CI +EG L+  G+  LTP T+VA LVDGYL+EVAPDVNLKL KF+++A+AIPDY
Sbjct: 375 GIVPSPCIIEEGHLVKDGADLLTPTTLVATLVDGYLAEVAPDVNLKLAKFEAIAAAIPDY 434

Query: 400 ARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQ 459
           ARPLDDG+Y AID++LKAHPW+TDSERE ICRLM+CQKLSLEASTHAAQNERLPLRVIVQ
Sbjct: 435 ARPLDDGVYHAIDVYLKAHPWITDSEREHICRLMNCQKLSLEASTHAAQNERLPLRVIVQ 494

Query: 460 VLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRER 519
           VLFFEQLRLRTS++GWFFVS+NLDN  N  G      N G  + R         +N+RER
Sbjct: 495 VLFFEQLRLRTSVSGWFFVSENLDNPDNQHG-----ANGGLLKPRG--------ENVRER 541

Query: 520 VSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKESPS 575
           VS+LEKECM+MKQE+ KLV+ K SW  F++K  F+ KS+         C PK+  +
Sbjct: 542 VSELEKECMNMKQELHKLVRTKRSWKNFTRKLNFKKKSEC--------CKPKDQAT 589
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
255587120630 protein binding protein, putative [Ricin 0.998 0.933 0.732 0.0
225449030619 PREDICTED: BTB/POZ domain-containing pro 0.983 0.935 0.740 0.0
224100787572 predicted protein [Populus trichocarpa] 0.915 0.942 0.721 0.0
449449479637 PREDICTED: BTB/POZ domain-containing pro 0.984 0.910 0.675 0.0
147778620561 hypothetical protein VITISV_038820 [Viti 0.916 0.962 0.702 0.0
224109770586 predicted protein [Populus trichocarpa] 0.937 0.941 0.696 0.0
296086008572 unnamed protein product [Vitis vinifera] 0.903 0.930 0.683 0.0
225439994624 PREDICTED: BTB/POZ domain-containing pro 0.977 0.923 0.658 0.0
449513629621 PREDICTED: LOW QUALITY PROTEIN: BTB/POZ 0.976 0.925 0.659 0.0
449440107621 PREDICTED: BTB/POZ domain-containing pro 0.976 0.925 0.657 0.0
>gi|255587120|ref|XP_002534145.1| protein binding protein, putative [Ricinus communis] gi|223525791|gb|EEF28238.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/605 (73%), Positives = 504/605 (83%), Gaps = 17/605 (2%)

Query: 1   LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAK 60
           LCS+GL SDVIIEVGE SFHLHKFPLLSRS VLE+LI E  GE  KKC L+  D+PGGAK
Sbjct: 21  LCSTGLASDVIIEVGEMSFHLHKFPLLSRSKVLEDLIGECYGEDGKKCTLRLDDLPGGAK 80

Query: 61  AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRM-------------KNFLNEVFGNWTDS 107
            FLLVAKFCYGVK++L+  NVVSLRCAAEYLRM             +NFLNE+FGNW DS
Sbjct: 81  TFLLVAKFCYGVKMELSTLNVVSLRCAAEYLRMSEDYGEGNLITQMENFLNEIFGNWRDS 140

Query: 108 IRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRTDGQSPGGTTLWNGI 167
           ++ALETCEEVLP AEELHIVSRCINSLAMKACADPSLFSWPMSG  D +SP GT  WNGI
Sbjct: 141 LKALETCEEVLPQAEELHIVSRCINSLAMKACADPSLFSWPMSGCNDMKSPEGTVFWNGI 200

Query: 168 GVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGR 227
             S+K QP+ EDWWYEDVSFLRLPLY+RLI AVG + +K E + G++++YA+RHLPLLGR
Sbjct: 201 RTSAKAQPIGEDWWYEDVSFLRLPLYRRLISAVGSNGMKPEKVVGALMYYARRHLPLLGR 260

Query: 228 QSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQAS 287
           QS  +NG+   P S+ S   +  QR LLEELVE++PD+KGV P+KFLLRLLRT++ L AS
Sbjct: 261 QSVVENGNLNAPGSMYSTVVDADQRNLLEELVEILPDQKGVTPSKFLLRLLRTAILLHAS 320

Query: 288 QSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNC 347
            +C+E LEKRIG+QLDQAALED++IPNMGYSVETLYDIDCVQRILDHF+L++HD   SN 
Sbjct: 321 SACQENLEKRIGAQLDQAALEDIMIPNMGYSVETLYDIDCVQRILDHFLLLDHDDPTSNY 380

Query: 348 ITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGI 407
           I DE Q++ GSHSLTPMTMVANLVD YL+EVAPD+NLKL KFQSLA+ IP YARP+DDGI
Sbjct: 381 IIDERQMMEGSHSLTPMTMVANLVDNYLAEVAPDINLKLLKFQSLAAVIPAYARPIDDGI 440

Query: 408 YRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLR 467
           YRAIDI+LKAHPWLTDSEREQ+CRLM+CQKLSLEASTHAAQNERLPLRVIVQVLFFEQLR
Sbjct: 441 YRAIDIYLKAHPWLTDSEREQLCRLMNCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLR 500

Query: 468 LRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQAR-NSQDSIVAVDNMRERVSDLEKE 526
           LRTSI+GWFFVSDNLDNSQNPSGNLA+TRNDGH Q    +QD IVAVD M+ERVSDLEKE
Sbjct: 501 LRTSISGWFFVSDNLDNSQNPSGNLAVTRNDGHTQVNATTQDRIVAVDEMKERVSDLEKE 560

Query: 527 CMSMKQEIEKLVKAKGSWNIFSKKFPF-RLKSKSSGLKVP-KTCNPKESP-SSTAPLMNA 583
           C++MK+EIEK+VK KGSWN+  ++  F R KSKSS  K   K  N KESP SST PLMN 
Sbjct: 561 CLNMKEEIEKIVKTKGSWNVLFRRLGFSRSKSKSSVPKAATKPSNSKESPTSSTTPLMNG 620

Query: 584 KVNQS 588
           K N S
Sbjct: 621 KQNHS 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449030|ref|XP_002274032.1| PREDICTED: BTB/POZ domain-containing protein At5g03250 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100787|ref|XP_002312014.1| predicted protein [Populus trichocarpa] gi|222851834|gb|EEE89381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449479|ref|XP_004142492.1| PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] gi|449487293|ref|XP_004157555.1| PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147778620|emb|CAN71724.1| hypothetical protein VITISV_038820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109770|ref|XP_002315306.1| predicted protein [Populus trichocarpa] gi|222864346|gb|EEF01477.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296086008|emb|CBI31449.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439994|ref|XP_002276233.1| PREDICTED: BTB/POZ domain-containing protein At5g03250 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449513629|ref|XP_004164379.1| PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440107|ref|XP_004137826.1| PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.915 0.910 0.595 3.3e-173
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.903 0.900 0.575 2.3e-151
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.838 0.742 0.507 1.3e-123
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.801 0.706 0.414 1.9e-108
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.572 0.592 0.366 2.6e-94
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.764 0.691 0.419 6e-87
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.867 0.832 0.384 1.8e-85
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.504 0.398 0.365 2.1e-81
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.930 0.864 0.355 6.6e-81
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.840 0.819 0.363 3.3e-79
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1683 (597.5 bits), Expect = 3.3e-173, P = 3.3e-173
 Identities = 345/579 (59%), Positives = 421/579 (72%)

Query:     1 LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAK 60
             LC++GL SDV IEVG+  FHLHKFPLLSRSG+LE LI E S +    CVL   +IPGG K
Sbjct:    21 LCTTGLVSDVTIEVGDMKFHLHKFPLLSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGK 80

Query:    61 AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRM-------------KNFLNEVFGNWTDS 107
              F LV KFCYGVKI+LTA NVVSLRCAAEYL M             + FLNEVFGNWTDS
Sbjct:    81 TFELVTKFCYGVKIELTAFNVVSLRCAAEYLEMTDNYGEGNLVGMTETFLNEVFGNWTDS 140

Query:   108 IRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSG---RTDGQSPGGTT-L 163
             I+AL+TCEEV+ +AE+LHI+SRC++SLA+KACADPSLF+WP+ G    T GQ+    + L
Sbjct:   141 IKALQTCEEVIDYAEDLHIISRCVDSLAVKACADPSLFNWPVGGGKNATSGQNTEDESHL 200

Query:   164 WNGIGVSSKP-QPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHL 222
             WNGI  S K  Q   EDWW++D SFL LPL+KRLI A+    +K E+IA ++++Y ++H+
Sbjct:   201 WNGISASGKMLQHTGEDWWFDDASFLSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHV 260

Query:   223 PLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPXXXXXXXXXXXX 282
             PL+ RQ +       E V     PSEE Q+T LEE+V L+P KKGV P            
Sbjct:   261 PLMNRQVNMD-----EQVIETPNPSEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQTAM 315

Query:   283 XXQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDT 342
                ASQS RE LE+RIG+QLDQAAL DLLIPNMGYS ETLYD++CV R+++ F+      
Sbjct:   316 VLHASQSSRENLERRIGNQLDQAALVDLLIPNMGYS-ETLYDVECVLRMIEQFVSSTEQA 374

Query:   343 --IDSNCITDEGQLI-GGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDY 399
               + S CI +EG L+  G+  LTP T+VA LVDGYL+EVAPDVNLKL KF+++A+AIPDY
Sbjct:   375 GIVPSPCIIEEGHLVKDGADLLTPTTLVATLVDGYLAEVAPDVNLKLAKFEAIAAAIPDY 434

Query:   400 ARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKLSLEASTHAAQNERLPLRVIVQ 459
             ARPLDDG+Y AID++LKAHPW+TDSERE ICRLM+CQKLSLEASTHAAQNERLPLRVIVQ
Sbjct:   435 ARPLDDGVYHAIDVYLKAHPWITDSEREHICRLMNCQKLSLEASTHAAQNERLPLRVIVQ 494

Query:   460 VLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRER 519
             VLFFEQLRLRTS++GWFFVS+NLDN  N  G      N G  + R         +N+RER
Sbjct:   495 VLFFEQLRLRTSVSGWFFVSENLDNPDNQHG-----ANGGLLKPRG--------ENVRER 541

Query:   520 VSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSK 558
             VS+LEKECM+MKQE+ KLV+ K SW  F++K  F+ KS+
Sbjct:   542 VSELEKECMNMKQELHKLVRTKRSWKNFTRKLNFKKKSE 580
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYW0Y5325_ARATHNo assigned EC number0.59890.93030.9256yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
pfam03000249 pfam03000, NPH3, NPH3 family 1e-121
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 1e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 5e-07
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  358 bits (921), Expect = e-121
 Identities = 134/265 (50%), Positives = 177/265 (66%), Gaps = 17/265 (6%)

Query: 179 DWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVE 238
           DWW+ED+S L + L+KR+I A+    +K E I  +++HYAK+ LP L R  S        
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGS-------- 53

Query: 239 PVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRI 298
                   SEE QR LLE +V L+P +KG     FL +LLR ++ L AS+SCRE LE+RI
Sbjct: 54  ----SEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRI 109

Query: 299 GSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGS 358
           G QLDQA L+DLLIP+     ETLYD+D VQRIL+ F+  + D    +   ++ +    S
Sbjct: 110 GLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFL--SRDAATQSSDDEDSE---AS 164

Query: 359 HSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKAH 418
            S + +  VA LVDGYL+E+APD NLKL KF +LA A+PD ARP  DG+YRAIDI+LKAH
Sbjct: 165 PSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAH 224

Query: 419 PWLTDSEREQICRLMDCQKLSLEAS 443
           P L++SE++++CRLMDCQKLS EA 
Sbjct: 225 PNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 589
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.91
PHA02713557 hypothetical protein; Provisional 99.9
PHA03098534 kelch-like protein; Provisional 99.86
PHA02790480 Kelch-like protein; Provisional 99.86
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.56
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.51
KOG4350620 consensus Uncharacterized conserved protein, conta 99.14
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.08
KOG4591280 consensus Uncharacterized conserved protein, conta 98.47
KOG4682488 consensus Uncharacterized conserved protein, conta 98.17
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.15
KOG07831267 consensus Uncharacterized conserved protein, conta 97.97
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.18
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.02
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.27
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.32
KOG3473112 consensus RNA polymerase II transcription elongati 94.98
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.88
KOG2838401 consensus Uncharacterized conserved protein, conta 92.39
KOG2838401 consensus Uncharacterized conserved protein, conta 91.44
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 90.12
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 88.63
KOG0511516 consensus Ankyrin repeat protein [General function 81.09
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1.9e-88  Score=686.38  Aligned_cols=258  Identities=52%  Similarity=0.823  Sum_probs=226.6

Q ss_pred             CCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccCCcCCCCCCCCccccCCCCCHHHHHHHHHH
Q 047046          178 EDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEE  257 (589)
Q Consensus       178 ~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~qr~LLEt  257 (589)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++.....     ............+||.+||+
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~-----~~~~~~~~~~~~~~r~llEt   75 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS-----SSSAESSTSSENEQRELLET   75 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc-----cccccccchhHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999985542111     11123345677899999999


Q ss_pred             HHHhcCCCCCCCCHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhhhccccccccccCCCCCCCccchHHHHHHHHHHHHh
Q 047046          258 LVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFML  337 (589)
Q Consensus       258 Iv~LLP~~k~~vs~~fLf~LLR~a~~l~as~~Cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~tlyDvd~V~ril~~Fl~  337 (589)
                      ||+|||.+|+++||+|||+|||+|+++++|..||.+||+|||+|||||||||||||+.+...+|+||||+|+|||++||.
T Consensus        76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~  155 (258)
T PF03000_consen   76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLS  155 (258)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999933344599999999999999999


Q ss_pred             ccCCCCCCCCccccccccCCCCCChhHHHHHHhHhhhhhhhcCCCCCChhHHHHHHHhCCCCCCCCcchhhHHHHHHHHh
Q 047046          338 INHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKA  417 (589)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLka  417 (589)
                      +++..+........   .....+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+
T Consensus       156 ~~~~~~~~~~~~~~---~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~  232 (258)
T PF03000_consen  156 QEEEAGEEEESESE---SGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKA  232 (258)
T ss_pred             cccccccccccccc---cccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHH
Confidence            86543210000000   011224789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhhccccccCCCCHHHh
Q 047046          418 HPWLTDSEREQICRLMDCQKLSLEAS  443 (589)
Q Consensus       418 Hp~ls~~Er~~lC~~~dc~KLS~eac  443 (589)
                      ||+||++||++||++|||||||+|||
T Consensus       233 Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  233 HPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cccCCHHHHHHHHhhCCcccCCcccC
Confidence            99999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-08
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 6e-08
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 9e-08
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 3e-07
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 3e-07
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-07
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 4e-07
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 6e-07
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-06
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-06
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-06
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-06
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-06
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-05
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-05
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 7e-05
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 1e-04
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 91/575 (15%), Positives = 159/575 (27%), Gaps = 190/575 (33%)

Query: 106 DSIRALETCEEV-----LPHAEE----LHIVSRCINSLAMKACADPSL---FSWPMSG-R 152
           D  +++ + EE+        A      L           ++   +  L   + + MS  +
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 153 TDGQSPGGTT---------LWNGIGVSSK-----PQPVTEDWWYEDVSFLRLPLYK---- 194
           T+ + P   T         L+N   V +K      QP  +         LR  L +    
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---------LRQALLELRPA 150

Query: 195 RLILAVGMSSI-KQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRT 253
           + +L  G+    K   +A  +    K        Q           +  ++  +     T
Sbjct: 151 KNVLIDGVLGSGKT-WVALDVCLSYKV-------QCKMDFK-----IFWLNLKNCNSPET 197

Query: 254 LLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIP 313
           +LE L +L             L  +  +   ++  S    L  RI S   QA L  LL  
Sbjct: 198 VLEMLQKL-------------LYQIDPNWTSRSDHSSNIKL--RIHSI--QAELRRLLK- 239

Query: 314 NMGYSVETLYDIDCVQ--RILDHF-----MLINHDTIDSNCITDEGQLIGGSH------- 359
           +  Y    L  +  VQ  +  + F     +L+   T     +TD       +H       
Sbjct: 240 SKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQ-VTDFLSAATTTHISLDHHS 295

Query: 360 -SLTP---MTMVANLVD---GYLSEVAPDV--------------------NLKLPKFQSL 392
            +LTP    +++   +D     L                           N K      L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 393 ASAI--------PDYARPLDDGIYRAIDIFLK-AH-P-------WLTDSEREQICRLMDC 435
            + I        P   R +    +  + +F   AH P       W    + + +  +   
Sbjct: 356 TTIIESSLNVLEPAEYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 436 QKLSLEA--------STHAAQNERLPLRVIVQVL---FFEQLRLRTSIAGWFFVSDNLDN 484
            K SL          S  +   E          L     +   +  +      +   LD 
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 485 -----------SQNPSGNLAL--------------TRNDGHA------------QARNSQ 507
                      +      + L               R+D  A            Q +  +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 508 DSIVAVDNMRER-VSDLEKECMSMKQEIEKLVKAK 541
             I   D   ER V+ +       K E E L+ +K
Sbjct: 532 PYICDNDPKYERLVNAILD--FLPKIE-ENLICSK 563
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.92
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.91
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.78
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.78
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.77
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.77
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.76
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.75
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.74
2vpk_A116 Myoneurin; transcription regulation, transcription 99.74
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.74
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.74
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.73
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.73
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.73
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.72
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.72
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.72
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.72
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.69
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.21
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.15
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.75
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.47
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.37
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.31
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 97.89
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.71
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 96.92
3kvt_A115 Potassium channel protein SHAW; tetramerization do 93.0
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 92.3
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 91.36
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 90.73
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 89.26
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 88.28
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 87.23
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.92  E-value=6.4e-26  Score=227.19  Aligned_cols=217  Identities=12%  Similarity=0.117  Sum_probs=154.4

Q ss_pred             CCCCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccc--cccccceEEecCCCCCHHHHHHHHHHHhCCccccChh
Q 047046            2 CSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSG--EAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAA   79 (589)
Q Consensus         2 ~~~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~--e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~   79 (589)
                      ..+|.+|||+|.|||+.|++||.+|+++|+||++||++++.  + +...+|.|++++  +++|+.+++|+|||++.++.+
T Consensus        26 ~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e-~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~  102 (256)
T 3hve_A           26 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEGIS--VMVMREILDYIFSGQIRLNED  102 (256)
T ss_dssp             CC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-C
T ss_pred             HhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCccc-CCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHh
Confidence            46789999999999999999999999999999999998664  3 356789999994  799999999999999999999


Q ss_pred             hHHHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhch---hhHHHHHHHHHHcCCCCCCcCC
Q 047046           80 NVVSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHI---VSRCINSLAMKACADPSLFSWP  148 (589)
Q Consensus        80 NV~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~i---v~rcidsLa~kac~d~~~~~~~  148 (589)
                      ||..++.||++|||+       +||.+ +.         ..+|..++.+|+.+++   .+.|.+-|+....    .+   
T Consensus       103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~---------~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~----~v---  166 (256)
T 3hve_A          103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIA---------AENCIGIRDFALHYCLHHVHYLATEYLETHFR----DV---  166 (256)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHHTCC---------SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HH---
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHhhCC---------HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----HH---
Confidence            999999999999999       67777 53         3578888888888874   4455555544421    00   


Q ss_pred             CCCCCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccC
Q 047046          149 MSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQ  228 (589)
Q Consensus       149 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~  228 (589)
                                                     +-.+++..|+.+.+..+|++......+++.|+.+++.|+++..+.  | 
T Consensus       167 -------------------------------~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~--R-  212 (256)
T 3hve_A          167 -------------------------------SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI--R-  212 (256)
T ss_dssp             -------------------------------TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC--S-
T ss_pred             -------------------------------hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH--H-
Confidence                                           003689999999999999999888888999999999888553221  1 


Q ss_pred             CcCCCCCCCCccccCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhhhccCC-HHHHHHHHH
Q 047046          229 SSFQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQAS-QSCREILEK  296 (589)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~LLP~~k~~vs~~fLf~LLR~a~~l~as-~~Cr~~LE~  296 (589)
                                         ...-..|++.|+.      +.+|..||...+.....+..+ +.|+.-|++
T Consensus       213 -------------------~~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          213 -------------------KVHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             -------------------TTTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             -------------------HHHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                               1334689999985      447788999999998888888 689998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 589
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-09
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 5e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 1   LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAK 60
           L S  + +DV+I V    F  HK  L++ SG+     + F+ + ++   +   D     +
Sbjct: 19  LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY---SIFTDQLKRNLSVINLDPEINPE 75

Query: 61  AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMK 94
            F ++  F Y  +++L   N++++   A YL+M+
Sbjct: 76  GFNILLDFMYTSRLNLREGNIMAVMATAMYLQME 109
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.78
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.77
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.55
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.34
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.96
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.65
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.58
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.81
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 90.04
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=159.96  Aligned_cols=88  Identities=23%  Similarity=0.409  Sum_probs=79.7

Q ss_pred             CCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhHHH
Q 047046            4 SGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVS   83 (589)
Q Consensus         4 ~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~~   83 (589)
                      .|.+|||+|.|+|++|++||.+|+++|+||++||.+.+.+ +....+.++++  .+++|+.+++|+|||++.|+.+||..
T Consensus        22 ~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e-~~~~~~~~~~v--~~~~f~~ll~~~Ytg~~~i~~~~v~~   98 (122)
T d1r29a_          22 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMA   98 (122)
T ss_dssp             TTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHH
T ss_pred             cCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhh-hcceeeeeccc--CHHHHHHHHhhhcCCeecCchhhHHH
Confidence            5889999999999999999999999999999999987765 33444555777  47999999999999999999999999


Q ss_pred             HHHHHhhhcHH
Q 047046           84 LRCAAEYLRMK   94 (589)
Q Consensus        84 L~~AA~~LqM~   94 (589)
                      ++.||++|+|+
T Consensus        99 ll~~A~~l~i~  109 (122)
T d1r29a_          99 VMATAMYLQME  109 (122)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHHCcH
Confidence            99999999998
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure