Citrus Sinensis ID: 047076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MEFQEGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSATKLSSKS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHcccHHHHccccccccccccccccEccHHHHHHHHHHcccccccccccEEcHHHccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mefqegptstnqnpkakEAAICQECKykvskykcpgcsirtcsLACVKAHkqrtgcsgnrnvtqfvplsqfndnILLSATKLSSKS
Flexible Loop (DISEMBL)
mefqegptstnqnpkakeAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKqrtgcsgnrnvtqfvplsqfndnillsatklssks
Low Complexity Region (SEG)
MEFQEGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSATKLSSKS
Disordered region (IsUnstruct)
*******************AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILL*********
Disordered Region (DISOPRED)
***********************ECKYKVSKYKCPGCSIRTCSLACVKAHKQR************VPLSQFNDNILLSATKLSS**
Disordered Region (DISEMBL)
*****************EAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSATKLSSKS
Disordered Region (DISPRO)
******************AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSATKLS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEFQEGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSATKLSSKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q3UFB2	460	Box C/D snoRNA protein 1	yes	no	0.662	0.123	0.473	3e-08
Q9NWK9	470	Box C/D snoRNA protein 1	yes	no	0.662	0.121	0.421	8e-08
Q5RF97	465	Box C/D snoRNA protein 1	yes	no	0.662	0.122	0.421	9e-08
O74906	345	Putative box C/D snoRNA p	yes	no	0.651	0.162	0.428	2e-06
P38772	366	Box C/D snoRNA protein 1	yes	no	0.465	0.109	0.55	1e-05

>sp|Q3UFB2|BCD1_MOUSE Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query: 22  CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
           C+ C  + +KY+CP C   +CSL CVK HK    CSG R+ T +V L QF +  LLS
Sbjct: 211 CETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLS 267

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.
Mus musculus (taxid: 10090)

>sp|Q9NWK9|BCD1_HUMAN Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 22  CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
           C+ C  + +KY+CP C   +CSL CVK HK    C+G R+ T ++ + QF +  LLS
Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLS 276

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5RF97|BCD1_PONAB Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 22  CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
           C+ C  + +KY+CP C   +CSL CVK HK    C+G R+ T ++ + QF +  LLS
Sbjct: 215 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLS 271

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Pongo abelii (taxid: 9601)

>sp|O74906|BCD1_SCHPO Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNI 75
           IC  C+   SKY+CP C  R C L C   HK+ T CSG R+   FVP S+  +++
Sbjct: 7  GICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVNHL 62

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38772|BCD1_YEAST Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCD1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query: 19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSG 58
          A +C  C  K  KYKCP C ++TCSL C K HK R  CSG
Sbjct: 2  AVLCGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSG 41

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
224121034	424	predicted protein [Populus trichocarpa]	0.918	0.186	0.632	9e-23
255542173	411	conserved hypothetical protein [Ricinus	0.825	0.172	0.647	7e-21
297741243	383	unnamed protein product [Vitis vinifera]	0.825	0.185	0.657	1e-20
225450358	385	PREDICTED: box C/D snoRNA protein 1 [Vit	0.825	0.184	0.657	1e-20
225467347	385	PREDICTED: box C/D snoRNA protein 1 [Vit	0.825	0.184	0.643	6e-20
297736416	340	unnamed protein product [Vitis vinifera]	0.825	0.208	0.643	7e-20
356530943	418	PREDICTED: box C/D snoRNA protein 1-like	0.767	0.157	0.651	3e-19
255645451	418	unknown [Glycine max]	0.767	0.157	0.651	3e-19
334182298	644	HIT-type Zinc finger family protein [Ara	0.686	0.091	0.677	8e-19
449530067	418	PREDICTED: box C/D snoRNA protein 1-like	0.825	0.169	0.626	8e-19

>gi|224121034|ref|XP_002330887.1| predicted protein [Populus trichocarpa] gi|222872709|gb|EEF09840.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 60/79 (75%)

Query: 4  QEGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVT 63
          +E P S N + K +E  +C+ECK K SKYKCPGCS+R+CSL CVKAHKQR  CSG R+ T
Sbjct: 7  EEEPLSLNSDLKKQETVLCEECKEKPSKYKCPGCSVRSCSLDCVKAHKQRASCSGKRSQT 66

Query: 64 QFVPLSQFNDNILLSATKL 82
           FVPLSQF+DN+LLS   L
Sbjct: 67 HFVPLSQFDDNLLLSDYNL 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542173|ref|XP_002512150.1| conserved hypothetical protein [Ricinus communis] gi|223548694|gb|EEF50184.1| conserved hypothetical protein [Ricinus communis]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 56/71 (78%)

Query: 12 QNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQF 71
          ++P  ++  IC+ECK   SKYKCPGCS+R+CSL CVKAHK RTGCSG RN T FVPLSQF
Sbjct: 7  KDPIEQQQPICEECKENPSKYKCPGCSLRSCSLPCVKAHKHRTGCSGKRNQTHFVPLSQF 66

Query: 72 NDNILLSATKL 82
          ND+++LS   L
Sbjct: 67 NDSLILSDYNL 77

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741243|emb|CBI32194.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 2/73 (2%)

Query: 10 TNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLS 69
          T QNP+     +CQECK   SKY CPGCS+R+CSL CVKAHKQ+TGC+G R  TQFVPLS
Sbjct: 5  TAQNPR--HPPLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLS 62

Query: 70 QFNDNILLSATKL 82
          QF+DN+LLS   L
Sbjct: 63 QFDDNLLLSDYNL 75

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450358|ref|XP_002269272.1| PREDICTED: box C/D snoRNA protein 1 [Vitis vinifera] gi|147778999|emb|CAN60314.1| hypothetical protein VITISV_036305 [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 2/73 (2%)

Query: 10 TNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLS 69
          T QNP+     +CQECK   SKY CPGCS+R+CSL CVKAHKQ+TGC+G R  TQFVPLS
Sbjct: 5  TAQNPR--HPPLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLS 62

Query: 70 QFNDNILLSATKL 82
          QF+DN+LLS   L
Sbjct: 63 QFDDNLLLSDYNL 75

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467347|ref|XP_002265717.1| PREDICTED: box C/D snoRNA protein 1 [Vitis vinifera]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 10 TNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLS 69
          T QNP+     +CQECK   SKY CPGCS+R+CSL CVKAHKQ+TGC+G R  TQFVPLS
Sbjct: 5  TAQNPR--HPPLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLS 62

Query: 70 QFNDNILLSATKL 82
          QF+D +LLS   L
Sbjct: 63 QFDDTLLLSDYNL 75

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736416|emb|CBI25139.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 10  TNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLS 69
           T QNP+     +CQECK   SKY CPGCS+R+CSL CVKAHKQ+TGC+G R  TQFVPLS
Sbjct: 55  TAQNPR--HPPLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLS 112

Query: 70  QFNDNILLSATKL 82
           QF+D +LLS   L
Sbjct: 113 QFDDTLLLSDYNL 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530943|ref|XP_003534038.1| PREDICTED: box C/D snoRNA protein 1-like [Glycine max]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 17 KEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNIL 76
          K   +C+ECK   SKY CPGCS+ +CSL CVK+HK RTGCSG RN TQF+PLS+F+DN+L
Sbjct: 16 KPTTLCEECKSNPSKYTCPGCSLHSCSLPCVKSHKDRTGCSGKRNQTQFLPLSKFDDNVL 75

Query: 77 LSATKL 82
          LS  KL
Sbjct: 76 LSDYKL 81

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645451|gb|ACU23221.1| unknown [Glycine max]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 17 KEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNIL 76
          K   +C+ECK   SKY CPGCS+ +CSL CVK+HK RTGCSG RN TQF+PLS+F+DN+L
Sbjct: 16 KPTTLCEECKSNPSKYTCPGCSLHSCSLPCVKSHKDRTGCSGKRNQTQFLPLSKFDDNVL 75

Query: 77 LSATKL 82
          LS  KL
Sbjct: 76 LSDYKL 81

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182298|ref|NP_001184910.1| HIT-type Zinc finger family protein [Arabidopsis thaliana] gi|332189643|gb|AEE27764.1| HIT-type Zinc finger family protein [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 20  AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
           ++C+ECK    KYKCPGCSIR+C+L CVKAHKQRTGC+G R  T  VPLS+F+DN+LLS
Sbjct: 256 SVCEECKQNPWKYKCPGCSIRSCALPCVKAHKQRTGCTGKRKFTDVVPLSKFDDNLLLS 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530067|ref|XP_004172018.1| PREDICTED: box C/D snoRNA protein 1-like [Cucumis sativus]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 58/75 (77%), Gaps = 4/75 (5%)

Query: 8  TSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVP 67
          TS+NQ    + +++C+ECK   SKYKCP CSIR+CSL CV AHK+R+GC+G R  TQFVP
Sbjct: 12 TSSNQ----QGSSLCEECKSNPSKYKCPACSIRSCSLNCVNAHKRRSGCTGKRKQTQFVP 67

Query: 68 LSQFNDNILLSATKL 82
          LSQFND+ILLS   L
Sbjct: 68 LSQFNDSILLSDYNL 82

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
FB|FBgn0030406	336	CG1463 [Drosophila melanogaste	0.802	0.205	0.376	8.1e-11
UNIPROTKB|E1BRD0	272	ZNHIT6 "Uncharacterized protei	0.662	0.209	0.473	9.3e-10
UNIPROTKB|F1SEX2	307	ZNHIT6 "Uncharacterized protei	0.662	0.185	0.438	6.3e-09
MGI|MGI:1916996	460	Znhit6 "zinc finger, HIT type	0.662	0.123	0.473	8.7e-09
UNIPROTKB|Q9NWK9	470	ZNHIT6 "Box C/D snoRNA protein	0.872	0.159	0.381	1.2e-08
RGD|1308723	461	Znhit6 "zinc finger, HIT-type	0.662	0.123	0.456	1.4e-08
UNIPROTKB|F1MYH0	471	ZNHIT6 "Uncharacterized protei	0.662	0.121	0.438	1.9e-08
POMBASE|SPCC613.07	345	SPCC613.07 "snoRNA biogenesis	0.639	0.159	0.436	2.3e-08
SGD|S000001082	366	BCD1 "Essential protein requir	0.465	0.109	0.55	1.5e-07
WB|WBGene00006489	455	zhit-3 [Caenorhabditis elegans	0.662	0.125	0.431	2.8e-07

FB|FBgn0030406 CG1463 [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query:    10 TNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLS 69
             T+   +     +C+ C  K + Y CP C ++TCSL CV+ HK+   C G R+ T+FVPLS
Sbjct:     5 TSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELNCDGQRDRTKFVPLS 64

Query:    70 QFNDNILLS 78
             +      +S
Sbjct:    65 EMTSREFMS 73

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|E1BRD0 ZNHIT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query:    22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
             C+ C  + +KY+CP C   +CSL CVK HK    CSG R+ T FV +++F D  LLS
Sbjct:     6 CETCGEEEAKYRCPRCMKYSCSLLCVKKHKLALSCSGVRDKTAFVSVTEFTDLNLLS 62

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

UNIPROTKB|F1SEX2 ZNHIT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query:    22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
             C+ C  + +KY+CP C   +CSL CVK HK    C+G R+ T +V + QF +  LLS
Sbjct:   222 CETCGTEEAKYRCPRCMRHSCSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLS 278

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

MGI|MGI:1916996 Znhit6 "zinc finger, HIT type 6" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query:    22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
             C+ C  + +KY+CP C   +CSL CVK HK    CSG R+ T +V L QF +  LLS
Sbjct:   211 CETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLS 267

GO:0000492 "box C/D snoRNP assembly" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=ISO

UNIPROTKB|Q9NWK9 ZNHIT6 "Box C/D snoRNA protein 1" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query:     4 QEGPTSTNQNPKAKEA-AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNV 62
             +E P +     K K A + C+ C  + +KY+CP C   +CSL CVK HK    C+G R+ 
Sbjct:   201 EEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDK 260

Query:    63 TQFVPLSQFNDNILLS 78
             T ++ + QF +  LLS
Sbjct:   261 TAYISIQQFTEMNLLS 276

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0070761 "pre-snoRNP complex" evidence=IDA

RGD|1308723 Znhit6 "zinc finger, HIT-type containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query:    22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
             C+ C  + +KY+CP C   +CSL CVK HK    CSG R+ T +V L +F +  LLS
Sbjct:   211 CETCGTEEAKYRCPRCMRYSCSLPCVKRHKAELMCSGVRDKTAYVSLQRFTEMNLLS 267

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

UNIPROTKB|F1MYH0 ZNHIT6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query:    22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
             C+ C  + +KY+CP C   +CSL CVK HK    C+G R+ T +V + QF +  LLS
Sbjct:   220 CETCGTEEAKYRCPRCLRYSCSLPCVKKHKAELTCNGVRDKTAYVSIQQFTEMNLLS 276

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

POMBASE|SPCC613.07 SPCC613.07 "snoRNA biogenesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query:    21 ICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNI 75
             IC  C+   SKY+CP C  R C L C   HK+ T CSG R+   FVP S+  +++
Sbjct:     8 ICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVNHL 62

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0016074 "snoRNA metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000001082 BCD1 "Essential protein required for the accumulation of box C/D snoRNA" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query:    19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSG 58
             A +C  C  K  KYKCP C ++TCSL C K HK R  CSG
Sbjct:     2 AVLCGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSG 41

GO:0016074 "snoRNA metabolic process" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=NAS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

WB|WBGene00006489 zhit-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 126 (49.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 25/58 (43%), Positives = 32/58 (55%)

Query:    16 AKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNV-TQFVPLSQFN 72
             A +  +C+ C     KYKCP C +RTCSL C K HK    C G R   T+   LSQ++
Sbjct:    78 AIDPKLCKVCLKNEHKYKCPRCEMRTCSLDCSKKHKADNNCDGVRQAFTKVDKLSQYD 135

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	86
pfam04438	30	pfam04438, zf-HIT, HIT zinc finger	2e-04
COG1066	456	COG1066, Sms, Predicted ATP-dependent serine prote	0.001
PRK11823	446	PRK11823, PRK11823, DNA repair protein RadA; Provi	0.001

>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 21 ICQECKYKVSKYKCPGCSIRTCSLACVK 48
          +C  C    SKY+CP C +R CSL C K
Sbjct: 4  LCSVCGNP-SKYRCPRCGVRYCSLECYK 30

This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interacts with the ligand binding domain of the thyroid receptor. Length = 30

>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 15 KAKEAAICQECKYKVSKY--KCPGC 37
          K K A +CQEC Y   K+  KCP C
Sbjct: 3  KKKTAFVCQECGYVSPKWLGKCPAC 27

Length = 456

>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 15 KAKEAAICQECKYKVSKY--KCPGC 37
          K K A +CQEC  +  K+  +CP C
Sbjct: 3  KKKTAYVCQECGAESPKWLGRCPEC 27

Length = 446

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG2858	390	consensus Uncharacterized conserved protein [Gener	99.66
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	99.27
KOG2857	157	consensus Predicted MYND Zn-finger protein/hormone	99.26
KOG4317	383	consensus Predicted Zn-finger protein [Function un	99.07
KOG3362	156	consensus Predicted BBOX Zn-finger protein [Genera	98.85
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	96.34
KOG2858	390	consensus Uncharacterized conserved protein [Gener	93.8
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	92.52
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	90.87
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	90.62
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	89.22
PLN03158	396	methionine aminopeptidase; Provisional	88.47
KOG2807	378	consensus RNA polymerase II transcription initiati	88.34
PHA00626	59	hypothetical protein	86.61
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.02
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	84.57
PLN00206	518	DEAD-box ATP-dependent RNA helicase; Provisional	84.32
PF13842	32	Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon	81.54
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	80.59
PRK13130	56	H/ACA RNA-protein complex component Nop10p; Review	80.4
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	80.22

>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]

Probab=99.66  E-value=2.7e-17  Score=129.91  Aligned_cols=69  Identities=36%  Similarity=0.649  Sum_probs=62.1

Q ss_pred             cccccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCCcceeee-cCCCCh------hhhhhhccccc
Q 047076           16 AKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVP-LSQFND------NILLSATKLSS   84 (86)
Q Consensus        16 ~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~~~~v~-~~~~~~------~~l~~Dy~fLe   84 (86)
                      .....+|+||+.+++||+||||.+++|||+|.+.||...+|+|.|++..||| |+|+++      +.+++||+||-
T Consensus        14 ~~~~vlCgVClknE~KYkCPRCl~rtCsLeCskkHK~~dnCsG~rqp~t~Vp~l~q~d~~K~~~~q~v~~d~n~l~   89 (390)
T KOG2858|consen   14 GLHSVLCGVCLKNEPKYKCPRCLARTCSLECSKKHKIGDNCSGSRQPPTEVPMLDQPDTEKRLAGQWVEQDVNDLP   89 (390)
T ss_pred             ccchhhhhhcccCcccccCcchhhhheeccccccccccCCCcCCcCCcccccccccCCchhhhhhHHHHHHhhhhh
Confidence            3456899999999999999999999999999999999999999999999998 467765      37899999984

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.27  E-value=7.4e-13  Score=71.65  Aligned_cols=29  Identities=48%  Similarity=1.140  Sum_probs=23.6

Q ss_pred             ccccccCCCCCeeEeCCCCCcccccccccc
Q 047076           19 AAICQECKYKVSKYKCPGCSIRTCSLACVK   48 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k   48 (86)
                      ..+|.||+. +++|+||+|+++||||+|+|
T Consensus         2 ~~~C~vC~~-~~kY~Cp~C~~~~CSl~C~k   30 (30)
T PF04438_consen    2 RKLCSVCGN-PAKYRCPRCGARYCSLACYK   30 (30)
T ss_dssp             -EEETSSSS-EESEE-TTT--EESSHHHHH
T ss_pred             cCCCccCcC-CCEEECCCcCCceeCcEeEC
Confidence            468999998 99999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]

Probab=99.26  E-value=1.4e-12  Score=92.80  Aligned_cols=41  Identities=41%  Similarity=0.861  Sum_probs=36.9

Q ss_pred             ccccccCCCCCeeEeCCCCCcccccccccccccccccCCCC
Q 047076           19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGN   59 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~   59 (86)
                      +.+|.||...++|||||+|..+||||.|||+||....|...
T Consensus         5 t~tC~ic~e~~~KYKCpkC~vPYCSl~CfKiHk~tPq~~~v   45 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSVPYCSLPCFKIHKSTPQCETV   45 (157)
T ss_pred             eeeehhhhcchhhccCCCCCCccccchhhhhccCCcccccc
Confidence            57899999999999999999999999999999997666543

>KOG4317 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.07  E-value=2.2e-11  Score=95.95  Aligned_cols=41  Identities=34%  Similarity=0.813  Sum_probs=37.2

Q ss_pred             ccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCC
Q 047076           19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRN   61 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~   61 (86)
                      -.+|.||+++.+.|+||||+.+||||.|||.|+++  |+.++.
T Consensus         7 ~~~C~ic~vq~~~YtCPRCn~~YCsl~CYr~h~~~--CsE~Fy   47 (383)
T KOG4317|consen    7 FLACGICGVQKREYTCPRCNLLYCSLKCYRNHKHS--CSEKFY   47 (383)
T ss_pred             eeeccccccccccccCCCCCccceeeeeecCCCcc--chHHHH
Confidence            35799999999999999999999999999999995  987654

>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]

Probab=98.85  E-value=6.6e-10  Score=79.27  Aligned_cols=46  Identities=28%  Similarity=0.681  Sum_probs=38.8

Q ss_pred             CCCCCcccccccccccCCCCCeeEeCCCCCcccccccccccccccccC
Q 047076            9 STNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGC   56 (86)
Q Consensus         9 s~~~~~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C   56 (86)
                      +++...-++...+|.||| .+++|.|-+||.+|||+.|.++|.+. .|
T Consensus       108 ~~a~p~~KP~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneT-RC  153 (156)
T KOG3362|consen  108 AYAKPSFKPLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNET-RC  153 (156)
T ss_pred             cccCCCCCCcchhhhhcC-CCchhHHHhcCCceeechhhhhcccc-cc
Confidence            344444456667999999 59999999999999999999999997 77

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.34  E-value=0.0011  Score=36.23  Aligned_cols=29  Identities=34%  Similarity=0.780  Sum_probs=23.1

Q ss_pred             cccCCCCCeeEeCCCC-Cccccccccccccc
Q 047076           22 CQECKYKVSKYKCPGC-SIRTCSLACVKAHK   51 (86)
Q Consensus        22 C~vC~~~~~kY~CP~C-~~~~CSl~C~k~Hk   51 (86)
                      |.+|+....+ +|++| .+.|||.+|.+.|-
T Consensus         1 C~~C~~~~~~-~C~~C~~~~YCs~~Cq~~~w   30 (37)
T PF01753_consen    1 CAVCGKPALK-RCSRCKSVYYCSEECQRADW   30 (37)
T ss_dssp             -TTTSSCSSE-EETTTSSSEESSHHHHHHHH
T ss_pred             CcCCCCCcCC-cCCCCCCEEecCHHHHHHHH
Confidence            6788875556 99999 78899999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]

Probab=93.80  E-value=0.023  Score=45.84  Aligned_cols=41  Identities=32%  Similarity=0.717  Sum_probs=38.8

Q ss_pred             cccccCCCCCeeEeCCCCCcccccccccccccccccCCCCC
Q 047076           20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNR   60 (86)
Q Consensus        20 ~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r   60 (86)
                      .+|..|+...++|+||+|.+..|.+++.+.|..+-.|.+.|
T Consensus       186 ~~~eTi~te~~k~~~pr~k~y~clV~e~~k~v~ql~c~~~R  226 (390)
T KOG2858|consen  186 SRCETIGTEEAKYRCPRCKRYSCLVPEVKKHVAQLTCNGVR  226 (390)
T ss_pred             ccccchhhhhccccccchhhhceeccchhhhhhhhcccccc
Confidence            68899999999999999999999999999999998998877

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=92.52  E-value=0.094  Score=27.04  Aligned_cols=14  Identities=21%  Similarity=0.878  Sum_probs=10.9

Q ss_pred             CCCCeeEeCCCCCc
Q 047076           26 KYKVSKYKCPGCSI   39 (86)
Q Consensus        26 ~~~~~kY~CP~C~~   39 (86)
                      ..+...|.||.|+.
T Consensus        11 r~~~v~f~CPnCG~   24 (24)
T PF07754_consen   11 REQAVPFPCPNCGF   24 (24)
T ss_pred             cccCceEeCCCCCC
Confidence            44567999999973

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=90.87  E-value=0.14  Score=31.20  Aligned_cols=25  Identities=40%  Similarity=1.014  Sum_probs=18.4

Q ss_pred             ccccCCC---CCeeEeCCCCCccc-cccc
Q 047076           21 ICQECKY---KVSKYKCPGCSIRT-CSLA   45 (86)
Q Consensus        21 ~C~vC~~---~~~kY~CP~C~~~~-CSl~   45 (86)
                      +|.||..   ....|.||.||++| ||.+
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~e   29 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEE   29 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHH
Confidence            4667775   35799999999987 5543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=90.62  E-value=0.048  Score=43.71  Aligned_cols=38  Identities=32%  Similarity=0.723  Sum_probs=32.4

Q ss_pred             ccccccCCCCCeeEeCCCCC-cccccccccccc----cccccCCC
Q 047076           19 AAICQECKYKVSKYKCPGCS-IRTCSLACVKAH----KQRTGCSG   58 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~-~~~CSl~C~k~H----k~~~~C~g   58 (86)
                      ..+|++||...++=||..|- ..||+-+|.|.|    |.  .|+-
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK--~C~~  361 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKK--VCSF  361 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHH--HHHH
Confidence            47999999999999999999 899999998764    55  4754

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=89.22  E-value=0.15  Score=31.44  Aligned_cols=20  Identities=30%  Similarity=1.024  Sum_probs=13.6

Q ss_pred             cccccCCCCCeeEeCCCCCc
Q 047076           20 AICQECKYKVSKYKCPGCSI   39 (86)
Q Consensus        20 ~~C~vC~~~~~kY~CP~C~~   39 (86)
                      .+|.-|.+....|+||.|+.
T Consensus        37 ~RC~~CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         37 YRCEKCRKQSNPYTCPKCGF   56 (59)
T ss_pred             eechhHHhcCCceECCCCCC
Confidence            45666666667788887764

>PLN03158 methionine aminopeptidase; Provisional

Probab=88.47  E-value=0.2  Score=40.22  Aligned_cols=34  Identities=29%  Similarity=0.696  Sum_probs=26.8

Q ss_pred             ccccccccccCCCCCeeEeCCCCCc--------cccccccccc
Q 047076           15 KAKEAAICQECKYKVSKYKCPGCSI--------RTCSLACVKA   49 (86)
Q Consensus        15 ~~~~~~~C~vC~~~~~kY~CP~C~~--------~~CSl~C~k~   49 (86)
                      +++.+..|.-|++ +++..||.|..        .+||-+|+|.
T Consensus         5 ~~~~~~~c~~c~~-~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~   46 (396)
T PLN03158          5 LTTSPLACARCSK-PAHLQCPKCLELKLPREGASFCSQDCFKA   46 (396)
T ss_pred             cCCCcccccCCCC-cccccCccchhcCCCCCCceeECHHHHHH
Confidence            4455677999996 68899999964        5799999763

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=88.34  E-value=0.45  Score=38.40  Aligned_cols=26  Identities=35%  Similarity=0.949  Sum_probs=20.7

Q ss_pred             ccccccCCC--CCeeEeCCCCCccccccc
Q 047076           19 AAICQECKY--KVSKYKCPGCSIRTCSLA   45 (86)
Q Consensus        19 ~~~C~vC~~--~~~kY~CP~C~~~~CSl~   45 (86)
                      +.+|. |..  ..+-|-||+|.++.|||.
T Consensus       263 ps~C~-CH~~~~~~Gy~CP~CkakvCsLP  290 (378)
T KOG2807|consen  263 PSFCA-CHSELSGGGYFCPQCKAKVCSLP  290 (378)
T ss_pred             cchhe-eccccccCceeCCcccCeeecCC
Confidence            36776 764  456899999999999994

>PHA00626 hypothetical protein

Probab=86.61  E-value=0.43  Score=29.45  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             cccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCCcceeeecCC
Q 047076           20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQ   70 (86)
Q Consensus        20 ~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~~~~v~~~~   70 (86)
                      ..|.+|......|+||.|+-.+        -|+.   -|.|...+||.++.
T Consensus        12 vrcg~cr~~snrYkCkdCGY~f--------t~~~---~~~~~~~~~~~~~~   51 (59)
T PHA00626         12 AKEKTMRGWSDDYVCCDCGYND--------SKDA---FGERGKNEFVRINK   51 (59)
T ss_pred             eeeceecccCcceEcCCCCCee--------chhh---hhhccccceEEech
Confidence            4688888777899999999654        2332   46777888888764

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.02  E-value=0.36  Score=33.06  Aligned_cols=14  Identities=43%  Similarity=1.231  Sum_probs=13.3

Q ss_pred             EeCCCCCccccccc
Q 047076           32 YKCPGCSIRTCSLA   45 (86)
Q Consensus        32 Y~CP~C~~~~CSl~   45 (86)
                      |.||+|+.++|+|.
T Consensus         2 Y~CPrC~skvC~LP   15 (112)
T TIGR00622         2 YFCPQCRAKVCELP   15 (112)
T ss_pred             ccCCCCCCCccCCC
Confidence            89999999999996

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=84.57  E-value=0.37  Score=29.98  Aligned_cols=20  Identities=30%  Similarity=0.938  Sum_probs=13.4

Q ss_pred             cccccCCCCCeeEeCCCCCc
Q 047076           20 AICQECKYKVSKYKCPGCSI   39 (86)
Q Consensus        20 ~~C~vC~~~~~kY~CP~C~~   39 (86)
                      .+|.-|......|+||.|+.
T Consensus        39 ~Rc~~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          39 YRCAKCRKLGNPYRCPKCGF   58 (61)
T ss_pred             ehhhhHHHcCCceECCCcCc
Confidence            34555666667788888874

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional

Probab=84.32  E-value=0.3  Score=39.65  Aligned_cols=48  Identities=25%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             cCCCCCCCCcccccccccccCCCCCeeEeCCCCCccccccccccccccc
Q 047076            5 EGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQR   53 (86)
Q Consensus         5 ~~p~s~~~~~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~   53 (86)
                      +...|-++.-+.++..+|.|||. -+-|-|-.=.-..|||+|...|-..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   61 (518)
T PLN00206         14 VKERSIEQREALPGEPKCVVCGR-YGEYICDETDDDICSLECKQALLRR   61 (518)
T ss_pred             hhhhhHHhcCCCCCCceEEEecC-ccceeccCCCCccccHHHHHHHHHH
Confidence            34455566677778899999996 7899999999999999999999864

>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon

Probab=81.54  E-value=1.7  Score=23.34  Aligned_cols=25  Identities=28%  Similarity=0.810  Sum_probs=19.2

Q ss_pred             ccccCCCC----CeeEeCCCCCccccccc
Q 047076           21 ICQECKYK----VSKYKCPGCSIRTCSLA   45 (86)
Q Consensus        21 ~C~vC~~~----~~kY~CP~C~~~~CSl~   45 (86)
                      .|.||..+    ..+|.|..|+...|--.
T Consensus         2 rC~vC~~~k~rk~T~~~C~~C~v~lC~~~   30 (32)
T PF13842_consen    2 RCKVCSKKKRRKDTRYMCSKCDVPLCVEP   30 (32)
T ss_pred             CCeECCcCCccceeEEEccCCCCcccCCC
Confidence            57788763    37999999998887654

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=80.59  E-value=0.85  Score=24.32  Aligned_cols=20  Identities=30%  Similarity=0.926  Sum_probs=13.9

Q ss_pred             ccccCCCC----CeeEeCCCCCcc
Q 047076           21 ICQECKYK----VSKYKCPGCSIR   40 (86)
Q Consensus        21 ~C~vC~~~----~~kY~CP~C~~~   40 (86)
                      .|.+||..    ....+||.|+.+
T Consensus         3 ~C~~CGy~y~~~~~~~~CP~Cg~~   26 (33)
T cd00350           3 VCPVCGYIYDGEEAPWVCPVCGAP   26 (33)
T ss_pred             ECCCCCCEECCCcCCCcCcCCCCc
Confidence            57888852    246788888763

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed

Probab=80.40  E-value=0.92  Score=27.55  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=24.9

Q ss_pred             cccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCCcceeeecCCCCh
Q 047076           18 EAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFND   73 (86)
Q Consensus        18 ~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~~~~v~~~~~~~   73 (86)
                      .+..|..|++-.-+-.||.|+..+=                ...+..|.|-..|..
T Consensus         4 ~mr~C~~CgvYTLk~~CP~CG~~t~----------------~~~P~rfSp~D~y~~   43 (56)
T PRK13130          4 KIRKCPKCGVYTLKEICPVCGGKTK----------------NPHPPRFSPEDKYGK   43 (56)
T ss_pred             cceECCCCCCEEccccCcCCCCCCC----------------CCCCCCCCCCCccHH
Confidence            4567777777555777777775532                345666666655544

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=80.22  E-value=1.4  Score=24.51  Aligned_cols=23  Identities=35%  Similarity=0.842  Sum_probs=19.0

Q ss_pred             cccCCCCCe--eEeCCCCCcccccc
Q 047076           22 CQECKYKVS--KYKCPGCSIRTCSL   44 (86)
Q Consensus        22 C~vC~~~~~--kY~CP~C~~~~CSl   44 (86)
                      |.+|+....  .++|..|+..+|+.
T Consensus         1 C~~C~~~~~l~~f~C~~C~~~FC~~   25 (39)
T smart00154        1 CHFCRKKVGLTGFKCRHCGNLFCGE   25 (39)
T ss_pred             CcccCCcccccCeECCccCCccccc
Confidence            677887665  59999999999985

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	2e-09
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	8e-07

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Length = 59

 Score = 47.7 bits (113), Expect = 2e-09
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 6  GPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQ 52
          G + ++    A     C   + + ++Y CP C+   CSL C + H  
Sbjct: 1  GSSGSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 47

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 56

 Score = 41.2 bits (96), Expect = 8e-07
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9  STNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNR 60
          S+  +       +C  C  K  KY+CP C +  CS+ C + HK++     + 
Sbjct: 2  SSGSSGLKCSTVVCVICLEK-PKYRCPACRVPYCSVVCFRKHKEQCNPETSG 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	99.71
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	99.54
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	96.51
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	95.82
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	95.4
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	94.71
2yqp_A	60	Probable ATP-dependent RNA helicase DDX59; structu	94.68
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	94.62
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	94.22
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	94.18
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	93.8
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	93.17
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	91.94
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	91.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	91.07
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	89.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	85.38
1z60_A	59	TFIIH basal transcription factor complex P44 subun	84.17

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.1e-18  Score=104.38  Aligned_cols=48  Identities=27%  Similarity=0.753  Sum_probs=42.2

Q ss_pred             cccccccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCC-Ccce
Q 047076           14 PKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNR-NVTQ   64 (86)
Q Consensus        14 ~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r-~~~~   64 (86)
                      .-+..+.+|.||+. .+||+||+|+++||||+|||.||++  |+++| ++++
T Consensus         7 ~~~~~~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~~--C~~~~~~p~~   55 (56)
T 2yqq_A            7 GLKCSTVVCVICLE-KPKYRCPACRVPYCSVVCFRKHKEQ--CNPETSGPSS   55 (56)
T ss_dssp             CCCCCCCCCTTTCS-CCSEECTTTCCEESSHHHHHHHHHH--CCCCCSSCCC
T ss_pred             ccCCCCCccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHhh--CcCCcCCCCC
Confidence            34445678999999 9999999999999999999999997  99999 7753

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=99.54  E-value=9.1e-16  Score=93.68  Aligned_cols=41  Identities=34%  Similarity=0.801  Sum_probs=36.4

Q ss_pred             ccccccCCC---CCeeEeCCCCCcccccccccccccccccCCCCCCc
Q 047076           19 AAICQECKY---KVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNV   62 (86)
Q Consensus        19 ~~~C~vC~~---~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~   62 (86)
                      ..+|.||+.   +++||+||+|+++||||.|+|.||   .|++.+.+
T Consensus        11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk---~Cse~F~~   54 (59)
T 1x4s_A           11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG---TCAENFYS   54 (59)
T ss_dssp             CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC---CGGGGTSC
T ss_pred             CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh---HhCHHHHh
Confidence            469999995   679999999999999999999998   59987764

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=96.51  E-value=0.0014  Score=38.38  Aligned_cols=41  Identities=24%  Similarity=0.633  Sum_probs=32.0

Q ss_pred             ccccccccCCCCCeeEeCCCCC-cccccccc----cccccccccCCCCC
Q 047076           17 KEAAICQECKYKVSKYKCPGCS-IRTCSLAC----VKAHKQRTGCSGNR   60 (86)
Q Consensus        17 ~~~~~C~vC~~~~~kY~CP~C~-~~~CSl~C----~k~Hk~~~~C~g~r   60 (86)
                      .....|.+|+. .+..+|.+|. +.|||.+|    |+.||.  .|....
T Consensus        11 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~--~C~~~~   56 (60)
T 2od1_A           11 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQTL   56 (60)
T ss_dssp             CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHHHHTT--TSSCSS
T ss_pred             CCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHHHHhH--HHcccc
Confidence            34578999997 6899999997 56999999    566776  476543

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=95.82  E-value=0.0057  Score=35.70  Aligned_cols=33  Identities=24%  Similarity=0.671  Sum_probs=26.9

Q ss_pred             ccccccccCCCCCeeEeCCCCCc-ccccccccccc
Q 047076           17 KEAAICQECKYKVSKYKCPGCSI-RTCSLACVKAH   50 (86)
Q Consensus        17 ~~~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~H   50 (86)
                      .....|..|+. .+..+|.+|.. .|||.+|.+.|
T Consensus        13 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~   46 (60)
T 2dj8_A           13 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKD   46 (60)
T ss_dssp             CCSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred             CCCcccccCCC-CCcccCCCCCCEeeeCHHHHHHH
Confidence            34578999997 68999999976 69999996553

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=95.40  E-value=0.012  Score=35.86  Aligned_cols=47  Identities=23%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             CCCCCcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCCC
Q 047076            9 STNQNPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSGN   59 (86)
Q Consensus         9 s~~~~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~   59 (86)
                      |++++.++.....|..|+....  .|+| +|+..+|+.-   +|-+...|+..
T Consensus         5 ~~~~~~~~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---R~~e~H~C~fD   53 (64)
T 1wg2_A            5 SSGPSRPVRPNNRCFSCNKKVGVMGFKC-KCGSTFCGSH---RYPEKHECSFD   53 (64)
T ss_dssp             CCCSSCCSCCSCSCTTTCCCCTTSCEEC-TTSCEECSSS---CSSTTTTCCCC
T ss_pred             ccCCCCCCCcCCcChhhCCcccccCeEe-ecCCEecccC---CCccccCCCcc
Confidence            4555556666789999998643  6999 9999999962   33344566543

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=94.71  E-value=0.027  Score=34.34  Aligned_cols=45  Identities=20%  Similarity=0.541  Sum_probs=31.1

Q ss_pred             CCCCcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCC
Q 047076           10 TNQNPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSG   58 (86)
Q Consensus        10 ~~~~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g   58 (86)
                      ....+++.....|..|+.+..  .|+| +|+..+|+.-   +|-+...|+-
T Consensus         6 ~~~~~~k~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---Ry~e~H~C~f   52 (64)
T 1wfh_A            6 SGQPSPPQRPNRCTVCRKRVGLTGFMC-RCGTTFCGSH---RYPEVHGCTF   52 (64)
T ss_dssp             SSCCCCCSSCCCCTTTCCCCCTTCEEC-SSSCEECTTT---CSTTTTTCCC
T ss_pred             CccCCCCCcCCcChhhCCccCccCEEe-ecCCEecccc---CCcccCCCCc
Confidence            334455666789999998644  6999 8999999962   3333445653

>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.68  E-value=0.022  Score=34.38  Aligned_cols=46  Identities=26%  Similarity=0.438  Sum_probs=38.2

Q ss_pred             cCCCCCCCCcccccccccccCCCCCeeEeCCCCCccccccccccccc
Q 047076            5 EGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHK   51 (86)
Q Consensus         5 ~~p~s~~~~~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk   51 (86)
                      +.+-|-++.-+.+...+|.||+. -+-|-|-.=.-..|||+|-..|-
T Consensus         5 ~~~~sk~Qr~p~pgePvCvvCGr-yGeYICd~Td~DVCSlECK~~~l   50 (60)
T 2yqp_A            5 SSGFSKTQRWAEPGEPICVVCGR-YGEYICDKTDEDVCSLECKAKHL   50 (60)
T ss_dssp             CCCSCCCCCCCCTTSCCCSSSSS-CCSEECSSSCCEESSHHHHHHHH
T ss_pred             ccchhhhhcCCCCCCceEEEecC-ccceeecCCCcchhhHHHHHHHH
Confidence            34556677777788899999996 78999999999999999977665

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.62  E-value=0.018  Score=35.43  Aligned_cols=44  Identities=23%  Similarity=0.496  Sum_probs=30.9

Q ss_pred             CCcccccccccccCCCCCee-----EeCCCCCcccccccccccccccccCCCC
Q 047076           12 QNPKAKEAAICQECKYKVSK-----YKCPGCSIRTCSLACVKAHKQRTGCSGN   59 (86)
Q Consensus        12 ~~~~~~~~~~C~vC~~~~~k-----Y~CP~C~~~~CSl~C~k~Hk~~~~C~g~   59 (86)
                      ..+.+.....|.+|+.....     |+| +|+..+|+.-   +|.++..|+-.
T Consensus         8 ~~~~~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H---Ry~e~H~C~fD   56 (67)
T 1x4w_A            8 SRSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH---RLPEQHDCTFD   56 (67)
T ss_dssp             CCCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT---CSTGGGTCSSC
T ss_pred             CccCCccCCcchhhCCeecccccCceEe-cCCCEehhcc---CCccccCCccc
Confidence            33444556899999997774     899 9999999963   33345566543

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=94.22  E-value=0.051  Score=34.74  Aligned_cols=44  Identities=23%  Similarity=0.499  Sum_probs=31.6

Q ss_pred             CCcccccccccccCCCCCe---eEeCCCCCcccccccccccccccccCCCC
Q 047076           12 QNPKAKEAAICQECKYKVS---KYKCPGCSIRTCSLACVKAHKQRTGCSGN   59 (86)
Q Consensus        12 ~~~~~~~~~~C~vC~~~~~---kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~   59 (86)
                      ...++.....|.+|+....   .|+| +|+..+|+.-   ++.++..|+..
T Consensus        18 ~~~~k~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~H---Ry~e~H~C~fD   64 (85)
T 1wff_A           18 LQTKKKIMKHCFLCGKKTGLATSFEC-RCGNNFCASH---RYAEAHGCNYD   64 (85)
T ss_dssp             CCCCCCCCCBCSSSCCBCSSSSCEEC-TTCCEECTTT---CSTGGGTCCSC
T ss_pred             cccCcccCccchhhCCeecccCCeEc-CCCCEecccC---CCccCCCCcch
Confidence            3345566789999998655   6999 6999999963   33355567653

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=94.18  E-value=0.014  Score=34.17  Aligned_cols=37  Identities=27%  Similarity=0.716  Sum_probs=29.0

Q ss_pred             ccccccCCCCCeeEeCCCCCc-cccccccccc----ccccccCCC
Q 047076           19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKA----HKQRTGCSG   58 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~----Hk~~~~C~g   58 (86)
                      ...|.+|+. ++..+|.+|.. .|||.+|.+.    ||.  .|..
T Consensus        17 ~~~C~~C~~-~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~--~C~~   58 (64)
T 2odd_A           17 SESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQ   58 (64)
T ss_dssp             SSSCTTTSS-CCCEEETTTSCCEESSHHHHHHHHHHHTT--TTTS
T ss_pred             CCcCccccC-CCcccCCCCCChhhCCHHHHHHHHHHHhH--HHhc
Confidence            568999997 68999999965 5999999654    555  4654

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=93.80  E-value=0.021  Score=31.95  Aligned_cols=31  Identities=26%  Similarity=0.680  Sum_probs=24.5

Q ss_pred             ccccccCCCCCeeEeCCCCCc-ccccccccccc
Q 047076           19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKAH   50 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~H   50 (86)
                      ...|.+|+. ++..+|.+|.. .|||.+|.+.|
T Consensus         9 ~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~   40 (52)
T 2jw6_A            9 EQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKD   40 (52)
T ss_dssp             --CCSSSSS-SCSEECTTTCSSEESSHHHHHHH
T ss_pred             CCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHH
Confidence            468999997 58999999976 69999996543

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=93.17  E-value=0.085  Score=32.97  Aligned_cols=45  Identities=24%  Similarity=0.558  Sum_probs=31.1

Q ss_pred             CcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCCCCC
Q 047076           13 NPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSGNRN   61 (86)
Q Consensus        13 ~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~   61 (86)
                      .+++.....|..|+.+..  .|+| +|+..+|+.-   +|.+...|+-...
T Consensus        19 ~~~k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~H---Ry~e~H~C~fDyk   65 (74)
T 1wfp_A           19 DPPKSTATRCLSCNKKVGVTGFKC-RCGSTFCGTH---RYPESHECQFDFK   65 (74)
T ss_dssp             CCTTCCCCBCSSSCCBCTTTCEEC-TTSCEECTTT---CSTTTSCCCSCTT
T ss_pred             ccCcccCccchhhcCcccccceEe-ccCCEecccc---CCCcCCCCcCchh
Confidence            344555689999997544  6999 9999999963   3444556765433

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=91.94  E-value=0.05  Score=32.84  Aligned_cols=38  Identities=21%  Similarity=0.526  Sum_probs=29.3

Q ss_pred             ccccccCCCCCeeEeCCCCCc-cccccccccc----ccccccCCCC
Q 047076           19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKA----HKQRTGCSGN   59 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~----Hk~~~~C~g~   59 (86)
                      ...|.+|+. ++..+|-+|.. .|||.+|.+.    ||.  .|...
T Consensus        15 ~~~C~~C~~-~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~--~C~~~   57 (70)
T 2d8q_A           15 RPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEKHGK--TCVLA   57 (70)
T ss_dssp             CCBCSSSCC-BCCCBCTTTSCCBCSCHHHHHHTHHHHHH--HCCCC
T ss_pred             CCcCCCCCC-cccccCCCCCCEeeCCHHHhHHHHHHHHH--HHHHH
Confidence            468999997 57889999985 5999999754    554  47644

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=91.49  E-value=0.037  Score=42.76  Aligned_cols=39  Identities=28%  Similarity=0.613  Sum_probs=30.9

Q ss_pred             ccccccccCCCC-CeeEeCCCCCc-cccccccc----ccccccccCC
Q 047076           17 KEAAICQECKYK-VSKYKCPGCSI-RTCSLACV----KAHKQRTGCS   57 (86)
Q Consensus        17 ~~~~~C~vC~~~-~~kY~CP~C~~-~~CSl~C~----k~Hk~~~~C~   57 (86)
                      .....|..|... ....+|++|.. +|||.+|.    +.||.  .|.
T Consensus        47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~   91 (433)
T 3qww_A           47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKL--ECS   91 (433)
T ss_dssp             GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTT--THH
T ss_pred             ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHH--HHH
Confidence            345789999974 46899999997 99999997    55766  474

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=91.07  E-value=0.06  Score=41.25  Aligned_cols=38  Identities=32%  Similarity=0.883  Sum_probs=29.9

Q ss_pred             cccccccCCC-CCeeEeCCCCCc-ccccccccc----cccccccCC
Q 047076           18 EAAICQECKY-KVSKYKCPGCSI-RTCSLACVK----AHKQRTGCS   57 (86)
Q Consensus        18 ~~~~C~vC~~-~~~kY~CP~C~~-~~CSl~C~k----~Hk~~~~C~   57 (86)
                      ....|..|.. .....+|++|.. +|||.+|.+    .||.  .|.
T Consensus        46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~   89 (429)
T 3qwp_A           46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKR--ECK   89 (429)
T ss_dssp             BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHH--HHH
T ss_pred             CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHH--hhh
Confidence            4578999996 356899999998 999999976    4554  464

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=89.05  E-value=0.57  Score=29.14  Aligned_cols=30  Identities=27%  Similarity=0.621  Sum_probs=23.2

Q ss_pred             cccccccccccCCCCCe--eEeCCCCCcccccc
Q 047076           14 PKAKEAAICQECKYKVS--KYKCPGCSIRTCSL   44 (86)
Q Consensus        14 ~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl   44 (86)
                      ..+.....|..|+.+..  .|+|. |+..+|+.
T Consensus        20 ~~k~~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~   51 (74)
T 1wfl_A           20 LPKPKKNRCFMCRKKVGLTGFDCR-CGNLFCGL   51 (74)
T ss_dssp             CCCSCTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred             cCCCcCCcChhhCCcccccCeecC-CCCEechh
Confidence            33444678999998533  69999 99999996

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=85.38  E-value=0.23  Score=38.89  Aligned_cols=39  Identities=26%  Similarity=0.675  Sum_probs=29.8

Q ss_pred             ccccccccCCCC-CeeEeCCCCCc-ccccccccc----cccccccCC
Q 047076           17 KEAAICQECKYK-VSKYKCPGCSI-RTCSLACVK----AHKQRTGCS   57 (86)
Q Consensus        17 ~~~~~C~vC~~~-~~kY~CP~C~~-~~CSl~C~k----~Hk~~~~C~   57 (86)
                      ....+|..|... ....+|++|.. .|||.+|.+    .||.  .|.
T Consensus        47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~   91 (490)
T 3n71_A           47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN--ECA   91 (490)
T ss_dssp             GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHH--HHH
T ss_pred             ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHH--HhH
Confidence            346789999763 45799999998 499999975    5665  474

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=84.17  E-value=0.35  Score=28.69  Aligned_cols=39  Identities=26%  Similarity=0.564  Sum_probs=30.9

Q ss_pred             cccccCCCCC---eeEeCCCCCcccccccccccccccccCCC
Q 047076           20 AICQECKYKV---SKYKCPGCSIRTCSLACVKAHKQRTGCSG   58 (86)
Q Consensus        20 ~~C~vC~~~~---~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g   58 (86)
                      ..|-.|+...   +.|+||+|...+|--=-..+|....+|.|
T Consensus        16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPg   57 (59)
T 1z60_A           16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPG   57 (59)
T ss_dssp             CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSST
T ss_pred             CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcC
Confidence            4599998743   26999999999997766777888878866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d1x4sa1	46	g.85.1.2 (A:8-53) Zinc finger HIT domain containin	7e-09

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 7e-09
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 14 PKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQ 52
            A     C   + + ++Y CP C+   CSL C + H  
Sbjct: 2  EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	99.56
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	96.8
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	96.79
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	96.51
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	94.99
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	94.56
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	92.74
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	89.63
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	80.35
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	80.35

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-16  Score=91.28  Aligned_cols=39  Identities=31%  Similarity=0.836  Sum_probs=35.2

Q ss_pred             ccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCC
Q 047076           19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNR   60 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r   60 (86)
                      ..+|.||..+++||+||+|+++||||+|+|.|++   |+..+
T Consensus         7 ~~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~Hk~---Cse~F   45 (46)
T d1x4sa1           7 CGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT---CAENF   45 (46)
T ss_dssp             ECSSCTTCCEEECEECTTTCCEESSHHHHHHHCC---GGGGT
T ss_pred             CccChhhhCccccccCCCCCCceechHHHhhhhh---ccccc
Confidence            4689999999999999999999999999999974   77654

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00026  Score=39.22  Aligned_cols=32  Identities=22%  Similarity=0.536  Sum_probs=26.5

Q ss_pred             ccccccCCCCCeeEeCCCCC-ccccccccccccc
Q 047076           19 AAICQECKYKVSKYKCPGCS-IRTCSLACVKAHK   51 (86)
Q Consensus        19 ~~~C~vC~~~~~kY~CP~C~-~~~CSl~C~k~Hk   51 (86)
                      ...|..|+. .+..+|.+|. +.|||.+|.+.|-
T Consensus         8 ~~~C~~Cg~-~~~~~Cs~C~~~~YCs~~CQ~~dW   40 (47)
T d2dana1           8 RPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHW   40 (47)
T ss_dssp             CCCCSSSCC-CCCEECTTTSCSEESSHHHHHHTH
T ss_pred             CCcCcCCCC-hhhccCCCCCCEeeCCHHHHHHHH
Confidence            347999997 5778999997 7999999987664

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00027  Score=38.95  Aligned_cols=32  Identities=25%  Similarity=0.691  Sum_probs=26.9

Q ss_pred             cccccccCCCCCeeEeCCCC-Ccccccccccccc
Q 047076           18 EAAICQECKYKVSKYKCPGC-SIRTCSLACVKAH   50 (86)
Q Consensus        18 ~~~~C~vC~~~~~kY~CP~C-~~~~CSl~C~k~H   50 (86)
                      ....|.+|+. ++..+|.+| .+.|||.+|.+.|
T Consensus         7 ~~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~d   39 (47)
T d2dj8a1           7 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKD   39 (47)
T ss_dssp             CSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred             CCCcCCCCCc-cccccCCCCCCeeeCCHHHHHHH
Confidence            4568999996 677899999 5899999997765

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00032  Score=37.12  Aligned_cols=29  Identities=28%  Similarity=0.709  Sum_probs=24.6

Q ss_pred             cccCCCCCeeEeCCCCCc-cccccccccccc
Q 047076           22 CQECKYKVSKYKCPGCSI-RTCSLACVKAHK   51 (86)
Q Consensus        22 C~vC~~~~~kY~CP~C~~-~~CSl~C~k~Hk   51 (86)
                      |.+|+. ++..+|.+|.. .|||.+|.+.|-
T Consensus         2 C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~W   31 (38)
T d2jw6a1           2 CVNCGR-EAMSECTGCHKVNYCSTFCQRKDW   31 (38)
T ss_dssp             CSSSSS-SCSEECTTTCSSEESSHHHHHHHT
T ss_pred             ccccCc-cccccCCCCCCEeeCCHHHHHHHH
Confidence            888997 57889999995 999999987664

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.012  Score=36.16  Aligned_cols=30  Identities=27%  Similarity=0.586  Sum_probs=23.2

Q ss_pred             cccccccccccCCCCCe---eEeCCCCCcccccc
Q 047076           14 PKAKEAAICQECKYKVS---KYKCPGCSIRTCSL   44 (86)
Q Consensus        14 ~~~~~~~~C~vC~~~~~---kY~CP~C~~~~CSl   44 (86)
                      .++.....|.+|+.+..   -|+| +|+..||+.
T Consensus        20 ~kk~~~~RC~~C~KKl~l~~~~~C-rCg~~FC~~   52 (85)
T d1wffa_          20 TKKKIMKHCFLCGKKTGLATSFEC-RCGNNFCAS   52 (85)
T ss_dssp             CCCCCCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred             cccccCCcChhcCCeecCCcCeec-CCCCEehhh
Confidence            33444578999998654   4999 699999986

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.56  E-value=0.02  Score=34.38  Aligned_cols=30  Identities=27%  Similarity=0.620  Sum_probs=23.4

Q ss_pred             cccccccccccCCCCCe--eEeCCCCCcccccc
Q 047076           14 PKAKEAAICQECKYKVS--KYKCPGCSIRTCSL   44 (86)
Q Consensus        14 ~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl   44 (86)
                      ..+.....|.+|+.+..  -|+| ||+..||++
T Consensus        20 ~~k~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~   51 (74)
T d1wfla_          20 LPKPKKNRCFMCRKKVGLTGFDC-RCGNLFCGL   51 (74)
T ss_dssp             CCCSCTTBCSSSCCBCGGGCEEC-TTSCEECSS
T ss_pred             CCCCCCCcChhhCCcccceeeEc-cCCCEehhh
Confidence            34445679999997543  6999 799999987

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.74  E-value=0.048  Score=31.78  Aligned_cols=29  Identities=21%  Similarity=0.681  Sum_probs=22.9

Q ss_pred             ccccccccccCCCCCe--eEeCCCCCcccccc
Q 047076           15 KAKEAAICQECKYKVS--KYKCPGCSIRTCSL   44 (86)
Q Consensus        15 ~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl   44 (86)
                      ++.....|.+|+.+..  -|+| +|+..+|+.
T Consensus        11 ~~~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~   41 (64)
T d1wfha_          11 PPQRPNRCTVCRKRVGLTGFMC-RCGTTFCGS   41 (64)
T ss_dssp             CCSSCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred             CCCCCCcChhhCCCccceeeec-cCCCEehhh
Confidence            3455679999997643  5999 699999986

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.63  E-value=0.2  Score=29.69  Aligned_cols=30  Identities=33%  Similarity=0.795  Sum_probs=23.2

Q ss_pred             cccccccccccCCCCC--eeEeCCCCCcccccc
Q 047076           14 PKAKEAAICQECKYKV--SKYKCPGCSIRTCSL   44 (86)
Q Consensus        14 ~~~~~~~~C~vC~~~~--~kY~CP~C~~~~CSl   44 (86)
                      +++.....|.+|+.+.  .-|+| +|+..||+.
T Consensus        20 ~~k~kk~RC~~C~KKl~l~~~~C-rCg~~FC~~   51 (74)
T d1wfpa_          20 PPKSTATRCLSCNKKVGVTGFKC-RCGSTFCGT   51 (74)
T ss_dssp             CTTCCCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred             CCCCCCCcChhcCCccCCCceec-CCCChhhhc
Confidence            4445578999999753  36899 799999985

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=0.38  Score=27.42  Aligned_cols=18  Identities=33%  Similarity=0.696  Sum_probs=14.5

Q ss_pred             CCeeEeCCCCCccccccc
Q 047076           28 KVSKYKCPGCSIRTCSLA   45 (86)
Q Consensus        28 ~~~kY~CP~C~~~~CSl~   45 (86)
                      +.+-|+||.|+.+|=.|+
T Consensus        11 ~~~~y~Cp~C~~~ys~Ld   28 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLE   28 (62)
T ss_dssp             SSSEEECSSSCCEEEHHH
T ss_pred             cCCceECCCCCCCcchhh
Confidence            457899999999996654

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=0.49  Score=26.88  Aligned_cols=40  Identities=25%  Similarity=0.516  Sum_probs=29.4

Q ss_pred             ccccccCCC---CCeeEeCCCCCcccccccccccccccccCCC
Q 047076           19 AAICQECKY---KVSKYKCPGCSIRTCSLACVKAHKQRTGCSG   58 (86)
Q Consensus        19 ~~~C~vC~~---~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g   58 (86)
                      .+.|..|+.   ....|+||+|...+|--==.-.|....+|.|
T Consensus        15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~Cpg   57 (59)
T d1z60a1          15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPG   57 (59)
T ss_dssp             CCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSST
T ss_pred             CCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCC
Confidence            467988984   3568999999999985433567777767765