Citrus Sinensis ID: 047079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCSARTEADVV
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccEEEccccccccccccccccEEccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccEEEEcHcccccccccccEEEEEEccccccccEEEcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEcccHHHHHHHHHHccccccEEEcccccccccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
mssttypsssypphaenyasppiTIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWqlrqspsgnaagtsdspanpglhpsliqafpafaystvkdfrrqKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWleshktcpvcrsdldlpqnslekspllfrsnsmnnitgsnvstLEDAISIFIKedeeargdngeqvvnpniikqneryEKIEKFsrshstghsmhttkneledrhtlrlpenvklkilrghnwtgscitfgefgspvtrnnvgfgdvprcsarteadvv
Flexible Loop (DISEMBL)
mssttypsssypphaenYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLlfrsnsmnnitgsnvstlEDAISIFIKEdeeargdngeqvvnpniikqneryEKIEKfsrshstghsmhttkneledrhtlrlpeNVKLKILRGHNWTGSCITFgefgspvtrnnvgfgdvprcsarteadvv
Low Complexity Region (SEG)
MssttypsssyppHAENYASPPitiiltvtllvfffvGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCSARTEADVV
Disordered region (IsUnstruct)
********************PPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQL**********************SLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD***************************TLEDAISIFI*******************************************************RLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDV************
Disordered Region (DISOPRED)
*********************PITIILTVTLLVFFFVGFFSVYFCRCFM********************************LIQAFPAFAYS************ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD*******************************************************************************************LRLPENV**********************************************
Disordered Region (DISEMBL)
************PHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQ*************ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEK*******************DRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCS********
Disordered Region (DISPRO)
****************NYASPPITIILTVTLLVFFFVGFFSVYFCRCFME*************************PGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL*****************************************************************************HSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCIT******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCSARTEADVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
O49691	289	RING-H2 finger protein AT	yes	no	0.915	0.937	0.470	6e-68
Q9FIR0	289	RING-H2 finger protein AT	no	no	0.858	0.878	0.464	9e-62
Q6NKR1	254	RING-H2 finger protein AT	no	no	0.777	0.905	0.375	3e-40
Q8RXX9	398	E3 ubiquitin-protein liga	no	no	0.854	0.635	0.352	1e-34
Q8W571	323	RING-H2 finger protein AT	no	no	0.726	0.665	0.342	2e-31
Q84W40	404	RING-H2 finger protein AT	no	no	0.743	0.544	0.362	2e-31
O64763	378	E3 ubiquitin-protein liga	no	no	0.793	0.621	0.345	3e-31
Q8LGA5	368	E3 ubiquitin-protein liga	no	no	0.712	0.573	0.351	1e-29
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.864	0.671	0.329	4e-29
O64762	302	RING-H2 finger protein AT	no	no	0.763	0.748	0.344	2e-26

>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3 SV=1

 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 181/291 (62%), Gaps = 20/291 (6%)

Query: 3   STTYPSSSYP-PHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQ- 60
           ST  PS   P P  ++Y +PP+T+ILTV LLVFFF+GFF++YFC+CF++ +V  W+L   
Sbjct: 2   STIIPSPLAPQPPQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHG 61

Query: 61  --SPSGNAAGTSDSP-ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDN 117
             + S N     ++P  NPGL   +I +FP F YS+VKD R +KYGLECAICL EF+ D+
Sbjct: 62  GDTVSDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDH 121

Query: 118 ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSN 177
           +LRLLT CYHVFHQECIDLW ESH+TCPVCR DLD P       P      +++ +    
Sbjct: 122 VLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKP------TVDEMIIDV 175

Query: 178 VSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEK----IEKFSRSHSTGHSMHT 233
           +    D      +ED+  R     Q+       Q    +K     EKFSRSHSTGHS+  
Sbjct: 176 IQETSDD-----EEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVR 230

Query: 234 TKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDV 284
            K E ED++TLRLPE+VK+K+ RGH+ T SC+TF E       ++  FG+V
Sbjct: 231 NKPEEEDKYTLRLPEHVKIKVTRGHSQTESCVTFAELIRNRGYDHRRFGEV 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2 SV=1

 Score =  237 bits (604), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 180/299 (60%), Gaps = 45/299 (15%)

Query: 2   SSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQ---- 57
            +TT P   YPP  ++Y+ PP+ IILTV LLV FF+GFF++YFC+CF   +   W     
Sbjct: 9   QNTTVP---YPP--QHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYH 63

Query: 58  --LRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFED 115
             L ++           P NPGL P +IQ++P F +S+VKD R  KYGLECAICL EFE+
Sbjct: 64  NGLPENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEE 123

Query: 116 DNI-LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD--LPQNSLEKSPLLFRSNSMNN 172
           ++I LRLLT CYHVFHQECID WLES+KTCPVCR +LD   P+N  E    + + N+  N
Sbjct: 124 EHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHEN 183

Query: 173 ITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIE----KFSRSHSTG 228
                              D+E    + E +++      NER  KIE    KFSRS +TG
Sbjct: 184 ------------------RDQEQTSTSNEVMLSRQSSGNNER--KIETLPDKFSRSKTTG 223

Query: 229 HSMHTTKNELEDRHTLRLPENVKLKILRGH--NWTGSCITFGEFGSPVTRNNVG-FGDV 284
           HS+   K E EDR+TLRLP++VK+K+ R H  N T SCI+FGE    + RN  G FG+V
Sbjct: 224 HSIVRNKPEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGE----LVRNREGRFGEV 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 141/272 (51%), Gaps = 42/272 (15%)

Query: 1   MSSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQ 60
           MSSTT   S          S P+T++LT  LL   F GFFS++  +  +  +  TW L++
Sbjct: 1   MSSTTSIDSIPATAVFPSVSMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQR 60

Query: 61  SPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILR 120
           +P G+    +  P N GL P +I++FP F YS+     ++ +G ECAICL+EF D++ +R
Sbjct: 61  TPYGDLIHVATPPENTGLDPFIIRSFPVFHYSSAT---KKNHGTECAICLSEFSDEDTVR 117

Query: 121 LLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVST 180
           L+TVC H FH  CIDLW E HKTCPVCR +LD         P +  S  + +   +   T
Sbjct: 118 LITVCRHPFHSNCIDLWFELHKTCPVCRCELD---------PGMIGSGRLESFHNTVTIT 168

Query: 181 LEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIE--KFSRSHSTGHSMHTTKNEL 238
           ++D     I  DEE          NP     ++R  +    +FSRSHSTGH M  T +  
Sbjct: 169 IQD-----INHDEE----------NPPTAGSSKRLIEASAWRFSRSHSTGHFMVKTTD-- 211

Query: 239 EDRHTLRLPENVKLKILRGHNWTGSCITFGEF 270
                     NVK K  R H  TGSC++F E 
Sbjct: 212 ---------ANVKSK--RRHYQTGSCVSFDEL 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 139/278 (50%), Gaps = 25/278 (8%)

Query: 2   SSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQS 61
           +S + P  +  P+     SP + +I+ + +   FF+GFFS+YF  C             S
Sbjct: 28  ASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGV-----S 82

Query: 62  PSGNAAGTSD-SPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILR 120
           P+G A   +  + A  GL  S+++ FP F YS VK  +  K  LECAICL EFEDD  LR
Sbjct: 83  PAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLR 142

Query: 121 LLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVST 180
           LL  C HVFH  CID WLE+H TCPVCR++L         +  +    S+    G     
Sbjct: 143 LLPKCDHVFHPHCIDAWLEAHVTCPVCRANL---------AEQVAEGESVE--PGGTEPD 191

Query: 181 LEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIE----KFSRSHSTGHSMHTTKN 236
           LE    + +  +        EQ+V   +  +      ++    KFSRSH+TGHS+     
Sbjct: 192 LE-LQQVVVNPEPVVTAPVPEQLVTSEVDSRRLPGVPVDLKRVKFSRSHTTGHSV-VQPG 249

Query: 237 ELEDRHTLRLPENVKLKILRGH--NWTGSCITFGEFGS 272
           E  +R TLRLPE+V+ +I++    N T S +     GS
Sbjct: 250 ECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGS 287

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 128/251 (50%), Gaps = 36/251 (14%)

Query: 9   SSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAG 68
           S  PP  +   +P  T +  V + +FF  G  SVY   C   N  ++ +  ++ + +   
Sbjct: 32  SPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDG-- 89

Query: 69  TSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHV 128
              S    GL  +++++FP FAYS+VK+ +     LECAICL E ED   +RLL +C H+
Sbjct: 90  ---SSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHL 146

Query: 129 FHQECIDLWLESHKTCPVCRSDL----DLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDA 184
           FH +CID WL SH TCPVCRS+L    + P +  +  PL     +M +    ++ T+E A
Sbjct: 147 FHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLA----AMRDHVVVDIETVEVA 202

Query: 185 ISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTL 244
            S   +   E  G                      KF RS+STGHSM    +  E R TL
Sbjct: 203 KSHHRRLSSEISG----------------------KFPRSNSTGHSMDRFSDGTE-RFTL 239

Query: 245 RLPENVKLKIL 255
           RLP++VK++++
Sbjct: 240 RLPDDVKMRLM 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 128/240 (53%), Gaps = 20/240 (8%)

Query: 21  PPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHP 80
           P + I++ V + VFFF+GFFSVY  RC +E ++       + +GN   T+   A  GL  
Sbjct: 61  PTMAILMIVLVSVFFFLGFFSVYIRRC-LERVMGMDYGNPNDAGNWLATNRQQAR-GLDA 118

Query: 81  SLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES 140
           S+I+ FP F YSTVK  R  K  LEC++CL EFEDD  LRL+  C HVFH  CID WL S
Sbjct: 119 SIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRS 178

Query: 141 HKTCPVCRSDL-DLPQNSLE--KSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARG 197
           H TCP+CR+DL  +P  S+   + P L      ++  G  + +L    +  I        
Sbjct: 179 HTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSDPNGDRIRSLGSPDARLI-------- 230

Query: 198 DNGEQVVNPNIIKQ--NERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKIL 255
           ++     N ++ ++  +  +     F+ S  TG       +E  DR TLRLP+++  K++
Sbjct: 231 ESVALTCNQSMPRRSMSTGWNLAGMFTNSDRTGQ-----HSENLDRFTLRLPQDIHNKLV 285

Arabidopsis thaliana (taxid: 3702)

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 125/249 (50%), Gaps = 14/249 (5%)

Query: 22  PITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSD--SPANPGLH 79
           P+ +++TV  LV FF+ F S+ FCR        +   R + +   +           GL 
Sbjct: 50  PVVVVITVLFLVIFFMVFGSI-FCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLD 108

Query: 80  PSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE 139
              I+ FP F YS VK  R  K G+ECA+CL EFEDD  LRL+  C HVFH +C+D+WL 
Sbjct: 109 AEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLS 168

Query: 140 SHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDN 199
            H TCP+CR+DL L Q   +       + S +      +S+  D     + E  +A   +
Sbjct: 169 EHSTCPLCRADLVLNQQGDDDDS----TESYSGTDPGTISSSTDPERGMVLESSDAHLLD 224

Query: 200 GEQVVNPNIIKQNERYE----KIEK--FSRSHSTGHSMHTTKNELEDRHTLRLPENVKLK 253
                N NI  +++       +I    F RSHSTGHS+      L DR TLRLP++V+ +
Sbjct: 225 AVTWSNSNITPRSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNL-DRFTLRLPDDVRRQ 283

Query: 254 ILRGHNWTG 262
           +++     G
Sbjct: 284 LMKTSRTMG 292

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 126/256 (49%), Gaps = 45/256 (17%)

Query: 7   PSSSYPPHAENYA-SPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGN 65
           P   + P+A + + SP + +++ V +   FF+GFF+VY   C             +P+G 
Sbjct: 28  PDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHC-----TGAVDGSVTPAGG 82

Query: 66  AAG-TSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTV 124
           A    +++    GL    I+ FP F YS VK  +  K  LECAICL EFEDD  LRLL  
Sbjct: 83  ARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPK 142

Query: 125 CYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDA 184
           C HVFH  CI  WL+ H TCPVCR++L       E++P                      
Sbjct: 143 CDHVFHPHCIGAWLQGHVTCPVCRTNL------AEQTP---------------------E 175

Query: 185 ISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTL 244
             + ++ D EA+    +Q   P  + +  R     KF RSH+TGHS+     E  DR TL
Sbjct: 176 PEVVVETDLEAQ----QQSAVPVPVVELPRV----KFPRSHTTGHSV-VLPGESTDRFTL 226

Query: 245 RLPENVKLKILRGHNW 260
           R+PE ++ KI+   NW
Sbjct: 227 RVPEELRKKIM--ANW 240

E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 136/282 (48%), Gaps = 26/282 (9%)

Query: 8   SSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAA 67
           SS +        SP   II+ V + VFF +G  SVY  RC    +          SG   
Sbjct: 24  SSEFDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMD-------SGGGP 76

Query: 68  GT---SDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTV 124
           G          PGL  S+I+ FP F YSTVK  R  K  LEC +CL EFEDD  LRL+  
Sbjct: 77  GNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQ 136

Query: 125 CYHVFHQECIDLWLESHKTCPVCRSDL-DLPQNSLEKS-PLLFRSNSMNNITGSNVSTLE 182
           C HVFH  CID WL S  TCP+CR++L  +P  S+    P L R    N++     + ++
Sbjct: 137 CCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLR----TPID 192

Query: 183 DAISIFIKEDEEARGDNGEQVVNPNIIKQNER--YEKIEKFSRSHSTGHSMHTTKNELED 240
           D     +   +E   D+     N ++ +++    ++  E +S + S G        E  D
Sbjct: 193 DNRKRVLTSPDERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQ-----PEENLD 247

Query: 241 RHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNV-GF 281
           R+TLRLP+ +  +++  ++  G   + G+   P  R++V GF
Sbjct: 248 RYTLRLPQEIHDQLV--NSSLGKQGSKGQLALPQERSSVRGF 287

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 120/244 (49%), Gaps = 18/244 (7%)

Query: 13  PHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDS 72
           P  E  AS    +++T+ L   F VG  SV F R       +   +      +    +  
Sbjct: 4   PGTEIKASDLTLLVITIILFAIFIVGLASVCF-RWTSRQFYSQESINPFTDSDVESRTSI 62

Query: 73  PANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQE 132
            A  GL  ++I +FP F YS VK+ R    G+ECA+C+ EFED   LRL+  C HVFH +
Sbjct: 63  TAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHAD 122

Query: 133 CIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKED 192
           C+ +WL  H TCP+CR DL L     E+S L    N   ++  S  S L D ++ +   +
Sbjct: 123 CVSVWLSDHSTCPLCRVDLCLQPG--ERSYL----NPEPDLVESTNSHLFDGVT-WTNRN 175

Query: 193 EEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKL 252
             +R  +              R  +I   SRSHSTGHS+    + L DR TLRLPE V+ 
Sbjct: 176 RPSRSWSTR--------LSQCRVSQI-LISRSHSTGHSVVQPLDNL-DRFTLRLPEEVRR 225

Query: 253 KILR 256
           ++ +
Sbjct: 226 QLTK 229

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
255573479	266	RING-H2 finger protein ATL3B precursor,	0.793	0.883	0.625	5e-82
225427177	281	PREDICTED: RING-H2 finger protein ATL29	0.932	0.982	0.572	1e-71
224138944	245	predicted protein [Populus trichocarpa]	0.777	0.938	0.573	3e-67
15236701	289	RING-H2 finger protein ATL29 [Arabidopsi	0.915	0.937	0.470	4e-66
297800290	294	zinc finger family protein [Arabidopsis	0.864	0.870	0.459	3e-65
449437230	311	PREDICTED: RING-H2 finger protein ATL29-	0.878	0.836	0.526	2e-60
15237483	289	RING-H2 finger protein ATL30 [Arabidopsi	0.858	0.878	0.464	6e-60
297794573	290	zinc finger family protein [Arabidopsis	0.858	0.875	0.468	9e-60
224074289	241	predicted protein [Populus trichocarpa]	0.75	0.921	0.558	2e-59
357491783	306	RING finger-like protein [Medicago trunc	0.912	0.882	0.422	1e-51

>gi|255573479|ref|XP_002527665.1| RING-H2 finger protein ATL3B precursor, putative [Ricinus communis] gi|223532970|gb|EEF34736.1| RING-H2 finger protein ATL3B precursor, putative [Ricinus communis]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/240 (62%), Positives = 186/240 (77%), Gaps = 5/240 (2%)

Query: 39  FFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFR 98
           FFS+YFCRCFM+ IV++W LR++PSGNA   ++SPAN GL PSLIQ FP F YS+V++FR
Sbjct: 23  FFSIYFCRCFMDGIVSSWHLRRTPSGNAINATNSPANSGLDPSLIQLFPTFGYSSVREFR 82

Query: 99  RQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSL 158
           R++YG ECAICL EF+DD+ILRLLTVCYHVFH+ECIDLWL S KTCPVCRSDLDLP+ +L
Sbjct: 83  REQYGFECAICLGEFKDDDILRLLTVCYHVFHEECIDLWLTSQKTCPVCRSDLDLPRETL 142

Query: 159 EKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDE---EARGDNGEQVVNPNIIKQNERY 215
           EK+PLL  +N  N  T  ++ +LE AI I ++ED+   E+RG N E     +  KQN+ +
Sbjct: 143 EKNPLLNPNNDTNG-TSQSIGSLEHAICINVREDDNEIESRGGNSEGTTRHHGEKQNQGH 201

Query: 216 EKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVT 275
           E IE+FSRSHSTGHS+  T+ E  DR+TLRL E+VK+K  RGHN   SCITFGEF SP T
Sbjct: 202 ENIERFSRSHSTGHSIVVTREE-NDRYTLRLLEHVKVKFTRGHNTAQSCITFGEFSSPQT 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427177|ref|XP_002277740.1| PREDICTED: RING-H2 finger protein ATL29 [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 200/290 (68%), Gaps = 14/290 (4%)

Query: 8   SSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAA 67
           +S +  H + YA PPIT+ILTV LLVFFF+GFFSVYFCRCFM N+ +TW L +SPSG   
Sbjct: 4   TSVHHTHPDAYA-PPITVILTVILLVFFFLGFFSVYFCRCFMGNLSHTW-LGRSPSG-TH 60

Query: 68  GTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYH 127
           G   S A  GL PS+I +FP F YSTVKD+R QKYGLECAICL+EFEDD++LRLLTVCYH
Sbjct: 61  GPGGSSAVHGLDPSIIDSFPTFVYSTVKDYREQKYGLECAICLSEFEDDDMLRLLTVCYH 120

Query: 128 VFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISI 187
           VFH +CIDLWL SH TCPVCR  LD+P  SLEKSP    +N+M +I      +L+D  SI
Sbjct: 121 VFHHDCIDLWLGSHNTCPVCRRSLDVPLKSLEKSPA--NNNTMQDI--DENESLDDECSI 176

Query: 188 FIKE-DEEARGDNGE-QVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLR 245
            IK+ DEE RG +      N + ++  E  E   KFSRSHSTGHS+  TK E ED+HTL 
Sbjct: 177 AIKDGDEECRGGSSTGGATNAHGLQIVENKEG--KFSRSHSTGHSIAWTKGE-EDKHTLI 233

Query: 246 LPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCSARTEADV 295
           LPE+VK KI RGHNW  SC TFG++     +   G G+V   S   E +V
Sbjct: 234 LPEHVKAKITRGHNW--SCTTFGDYSRYRNKGKGGVGEVSGFSGSNEDNV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138944|ref|XP_002326729.1| predicted protein [Populus trichocarpa] gi|222834051|gb|EEE72528.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/237 (57%), Positives = 167/237 (70%), Gaps = 7/237 (2%)

Query: 49  MENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAI 108
           ME IV+ W LRQS  G     + S  NPGL  S IQ FP F YS+VKDFRR+++GLECAI
Sbjct: 1   MEGIVHGWHLRQSSLG-LVNPASSKENPGLDSSQIQLFPTFTYSSVKDFRREQHGLECAI 59

Query: 109 CLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSN 168
           CLAEF D++++RLLTVCYHVFHQECIDLWLESHKTCPVCR DLDLP+ +LEK+ +     
Sbjct: 60  CLAEFSDEDLVRLLTVCYHVFHQECIDLWLESHKTCPVCRRDLDLPKEALEKARIGDHRA 119

Query: 169 SMN--NITGSNVSTLEDAISIFIKED--EEARGDNGEQVVNPNIIKQNERYEKIEKFSRS 224
            +N  +   +NV  LE AISI + ED  EE R  +G      ++ +QNE +EKI   SRS
Sbjct: 120 DINVHDTNETNV-LLEHAISIHVSEDSGEEGREGHGRGSSTQDVDRQNEGHEKILGMSRS 178

Query: 225 HSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGF 281
           HSTGHS+  T+ E EDR+TLRL E VK+KI RGH  TGSCITFG++  P+   + GF
Sbjct: 179 HSTGHSILATREE-EDRYTLRLMERVKVKITRGHCATGSCITFGDYSGPMNDGHGGF 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236701|ref|NP_193526.1| RING-H2 finger protein ATL29 [Arabidopsis thaliana] gi|68565085|sp|O49691.1|ATL29_ARATH RecName: Full=RING-H2 finger protein ATL29 gi|2894601|emb|CAA17135.1| putative protein [Arabidopsis thaliana] gi|7268544|emb|CAB78794.1| putative protein [Arabidopsis thaliana] gi|332658568|gb|AEE83968.1| RING-H2 finger protein ATL29 [Arabidopsis thaliana]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 181/291 (62%), Gaps = 20/291 (6%)

Query: 3   STTYPSSSYP-PHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQ- 60
           ST  PS   P P  ++Y +PP+T+ILTV LLVFFF+GFF++YFC+CF++ +V  W+L   
Sbjct: 2   STIIPSPLAPQPPQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHG 61

Query: 61  --SPSGNAAGTSDSP-ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDN 117
             + S N     ++P  NPGL   +I +FP F YS+VKD R +KYGLECAICL EF+ D+
Sbjct: 62  GDTVSDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDH 121

Query: 118 ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSN 177
           +LRLLT CYHVFHQECIDLW ESH+TCPVCR DLD P       P      +++ +    
Sbjct: 122 VLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKP------TVDEMIIDV 175

Query: 178 VSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEK----IEKFSRSHSTGHSMHT 233
           +    D      +ED+  R     Q+       Q    +K     EKFSRSHSTGHS+  
Sbjct: 176 IQETSDD-----EEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVR 230

Query: 234 TKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDV 284
            K E ED++TLRLPE+VK+K+ RGH+ T SC+TF E       ++  FG+V
Sbjct: 231 NKPEEEDKYTLRLPEHVKIKVTRGHSQTESCVTFAELIRNRGYDHRRFGEV 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800290|ref|XP_002868029.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297313865|gb|EFH44288.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 183/294 (62%), Gaps = 38/294 (12%)

Query: 17  NYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQ---SPSGNAAGTSDSP 73
           +Y +PP+T+ILTV LLVFFF+GFF++YFC+CF++ ++  W+L     + S N     ++P
Sbjct: 22  HYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMMQAWRLHHGGDTVSDNPLQPPEAP 81

Query: 74  -ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQE 132
             NPGL   +I +FP F YS+VKD R +KYGLECAICL EF+ D++LRLLT CYHVFHQE
Sbjct: 82  PVNPGLDLRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQE 141

Query: 133 CIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKE- 191
           CIDLW ESH+TCPVCR DLD P       P                 T+++ I   I+E 
Sbjct: 142 CIDLWFESHRTCPVCRRDLDPPPQPENTKP-----------------TVDEMIIDVIQET 184

Query: 192 -DEEARGDNGEQVVNP----------NIIKQNERYEKIEKFSRSHSTGHSMHTTKNELED 240
            D+E    +  Q   P          + IK+ +     EKFSRSHSTGHS+   K E ED
Sbjct: 185 SDDEEDDHHRHQTTTPIDTWPSSGQSSSIKKEQNLP--EKFSRSHSTGHSIVRNKPEEED 242

Query: 241 RHTLRLPENVKLKILRGHNWTGSCITFGEFGSPVTRNNVGFGDVPRCSARTEAD 294
           ++TLRLPE+VK+K+ RGH+ T SC+TF E       ++  FG+V   S +T+++
Sbjct: 243 KYTLRLPEHVKIKVTRGHSQTESCVTFAELVKNRGYDHRRFGEV---SGQTQSE 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437230|ref|XP_004136395.1| PREDICTED: RING-H2 finger protein ATL29-like [Cucumis sativus] gi|449520675|ref|XP_004167359.1| PREDICTED: RING-H2 finger protein ATL29-like [Cucumis sativus]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/281 (52%), Positives = 196/281 (69%), Gaps = 21/281 (7%)

Query: 10  SYPPHAEN-YASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPSGNAA- 67
           S PP   N ++SPP+TIILT+ LL F  +GFFS+YFCRC ME+++++  LR+SPSGN   
Sbjct: 6   SRPPFPTNDHSSPPLTIILTLILLAFLLIGFFSIYFCRCIMESLLHSRNLRRSPSGNLLH 65

Query: 68  GTSDSPA-NPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCY 126
            TSDSPA +PGL P LI +FP F YS +K+FR  K GLECAICL EF+DD+ LRLLT C 
Sbjct: 66  PTSDSPAPHPGLDPLLINSFPTFPYSGIKEFRSDKIGLECAICLLEFDDDSFLRLLTNCC 125

Query: 127 HVFHQECIDLWLESHKTCPVCRSDLD--LPQNSLEKSPLLFRSNSMNNITGSNVSTLEDA 184
           HVFHQECIDLWL+SHKTCPVCR DLD   P++S +K P+   SN+ N    S+  ++EDA
Sbjct: 126 HVFHQECIDLWLDSHKTCPVCRRDLDSVSPRDSSDK-PIDPDSNTDNPPRISHHESIEDA 184

Query: 185 ISIFIKEDEEARGDNGEQVVNPNIIKQNER---------------YEKIEKFSRSHSTGH 229
           ISI I +D +    + ++   P++  +  +                E+ ++FSRSHSTGH
Sbjct: 185 ISIDIDDDIDDVIGDADEDHRPSVCSEKGKQGITKTEEEKEKEKELERFKRFSRSHSTGH 244

Query: 230 SMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEF 270
           S+  ++ E ED+H L LPE++K+KI+RGHNWTGSC+TF EF
Sbjct: 245 SIVKSRREGEDKHKLILPEHIKIKIIRGHNWTGSCVTFDEF 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237483|ref|NP_199477.1| RING-H2 finger protein ATL30 [Arabidopsis thaliana] gi|68565288|sp|Q9FIR0.1|ATL30_ARATH RecName: Full=RING-H2 finger protein ATL30 gi|9758501|dbj|BAB08909.1| unnamed protein product [Arabidopsis thaliana] gi|332008027|gb|AED95410.1| RING-H2 finger protein ATL30 [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 180/299 (60%), Gaps = 45/299 (15%)

Query: 2   SSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQ---- 57
            +TT P   YPP  ++Y+ PP+ IILTV LLV FF+GFF++YFC+CF   +   W     
Sbjct: 9   QNTTVP---YPP--QHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYH 63

Query: 58  --LRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFED 115
             L ++           P NPGL P +IQ++P F +S+VKD R  KYGLECAICL EFE+
Sbjct: 64  NGLPENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEE 123

Query: 116 DNI-LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD--LPQNSLEKSPLLFRSNSMNN 172
           ++I LRLLT CYHVFHQECID WLES+KTCPVCR +LD   P+N  E    + + N+  N
Sbjct: 124 EHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHEN 183

Query: 173 ITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIE----KFSRSHSTG 228
                              D+E    + E +++      NER  KIE    KFSRS +TG
Sbjct: 184 ------------------RDQEQTSTSNEVMLSRQSSGNNER--KIETLPDKFSRSKTTG 223

Query: 229 HSMHTTKNELEDRHTLRLPENVKLKILRGH--NWTGSCITFGEFGSPVTRNNVG-FGDV 284
           HS+   K E EDR+TLRLP++VK+K+ R H  N T SCI+FGE    + RN  G FG+V
Sbjct: 224 HSIVRNKPEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGE----LVRNREGRFGEV 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794573|ref|XP_002865171.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297311006|gb|EFH41430.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 140/299 (46%), Positives = 178/299 (59%), Gaps = 45/299 (15%)

Query: 2   SSTTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQS 61
            +TT P   YPP  ++Y+ PP+ IILTV LLV FF+GFF++YFC+CF   +   W     
Sbjct: 9   QNTTVP---YPP--QHYSKPPLVIILTVILLVVFFIGFFALYFCKCFYHTLTEAWNHHYR 63

Query: 62  ---PSGNAAGTSDS---PANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFED 115
              P        D    P NPGL P +IQ+FP F +S+VKD R  KYGLECAICL EFE+
Sbjct: 64  NGLPENQVQAQQDPVQPPVNPGLEPHIIQSFPLFPFSSVKDLREDKYGLECAICLLEFEE 123

Query: 116 DNI-LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD--LPQNSLEKSPLLFRSNSMNN 172
           ++I LRLLT CYHVFHQECID WLES+KTCPVCR +LD   P+N  E    + + N+  N
Sbjct: 124 EHIFLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHEN 183

Query: 173 ITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIE----KFSRSHSTG 228
                              D+     + E +++      NER  KIE    KFSRS +TG
Sbjct: 184 ------------------RDQNQTSTSNEVLLSRQSSSNNER--KIETLPDKFSRSKTTG 223

Query: 229 HSMHTTKNELEDRHTLRLPENVKLKILRGH--NWTGSCITFGEFGSPVTRNNVG-FGDV 284
           HS+   K E EDR+TLRLP++VK+K+ R H  N T SCI+FGE    + RN  G FG+V
Sbjct: 224 HSIVRNKPEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGE----LMRNRGGRFGEV 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074289|ref|XP_002304340.1| predicted protein [Populus trichocarpa] gi|222841772|gb|EEE79319.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 161/229 (70%), Gaps = 7/229 (3%)

Query: 46  RCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLE 105
           +CFME I++ W LRQ+  G     + S  NPGL  S IQ FP F YS VKD+RR++Y LE
Sbjct: 16  KCFMEGIMHNWHLRQNSRG-LVNLASSKENPGLDSSQIQFFPTFTYSNVKDYRREQYVLE 74

Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLF 165
           CAICLAEF  D++LRLLTVCYHVFHQECIDLWLE+HKTCPVCR DLDLP+  LEK+ +  
Sbjct: 75  CAICLAEFSYDDLLRLLTVCYHVFHQECIDLWLEAHKTCPVCRRDLDLPKEILEKTRIRD 134

Query: 166 RSNSMNNITGSNVST--LEDAISIFIKEDEEARGDNGEQVVNP--NIIKQNERYEKIEKF 221
               + N+  ++V+   LE AISI I+ED    G  G   V    +  +QNE ++K+   
Sbjct: 135 HRADI-NVHDADVTNALLEHAISIHIREDSGEEGGEGNDEVGSTHDADRQNEEHKKMLGL 193

Query: 222 SRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGHNWTGSCITFGEF 270
           SRSHSTGHS+  T+ E E+R+TLRL E+VK+KI RGH  TGSCITFG++
Sbjct: 194 SRSHSTGHSIVATREE-ENRYTLRLMEHVKVKITRGHCATGSCITFGDY 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491783|ref|XP_003616179.1| RING finger-like protein [Medicago truncatula] gi|355517514|gb|AES99137.1| RING finger-like protein [Medicago truncatula]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 173/298 (58%), Gaps = 28/298 (9%)

Query: 3   STTYPSSSYPPHAENYASPPITIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSP 62
           S++ P    PP A  Y +PP  +  T+T+L+  FV F  VY C+       +TW L+++ 
Sbjct: 2   SSSEPKYDTPP-APTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTT 60

Query: 63  SGNAAGTS-DSPANPGLHPSLIQAFPAFAYSTVKDFRRQK-YGLECAICLAEFEDDNILR 120
           SG+    S D   + GL  +L++ FP F YS+VKD R++K Y LECAICL EF+DD++LR
Sbjct: 61  SGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLR 120

Query: 121 LLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEK--SPLLFRSNSMNNITGSNV 178
           LLT+C HVFHQECIDLWLESHKTCPVCR+DLD P N + K        +N+  N+     
Sbjct: 121 LLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMT 180

Query: 179 STLEDAISIFIKEDEE-----------ARGDNGEQVVNPNIIKQNERYEKIEKFSRSHST 227
           S   D I I ++ +E              GD  +  V  ++ +Q +      +FSRSHST
Sbjct: 181 SLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDH-----RFSRSHST 235

Query: 228 GHSMHTTKNELED--RHTLRLPENVKLKILRGHNWTGSCITFGEFG--SPVTRNNVGF 281
           GHS+ T + E +D  ++TLRLPE+V   I  GHN+T SC  + E     P   +N GF
Sbjct: 236 GHSIVTIRGEEKDHEKYTLRLPEHV---IRGGHNYTRSCTNYNEMKLTIPTPCSNCGF 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2141005	289	AT4G17920 [Arabidopsis thalian	0.885	0.906	0.439	2e-56
TAIR|locus:2178515	289	AT5G46650 [Arabidopsis thalian	0.841	0.861	0.427	1.5e-51
TAIR|locus:2062502	254	AT2G35420 [Arabidopsis thalian	0.378	0.440	0.469	5e-35
TAIR|locus:4515102621	332	ATL1F [Arabidopsis thaliana (t	0.699	0.623	0.375	6.9e-31
TAIR|locus:2096309	398	ATL6 "Arabidopsis toxicos en l	0.733	0.545	0.371	3.8e-30
TAIR|locus:2146330	368	CNI1 "carbon/nitrogen insensit	0.368	0.296	0.469	6.8e-30
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.385	0.352	0.428	2.9e-29
TAIR|locus:2044742	302	AT2G34990 [Arabidopsis thalian	0.469	0.460	0.393	2.5e-28
TAIR|locus:2044757	378	ATL9 "Arabidopsis toxicos en l	0.591	0.462	0.387	5e-28
TAIR|locus:2207026	404	AT1G72200 [Arabidopsis thalian	0.692	0.507	0.371	6.4e-28

TAIR|locus:2141005 AT4G17920 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 120/273 (43%), Positives = 161/273 (58%)

Query:    16 ENYASPPXXXXXXXXXXXXXXXGFFSVYFCRCFMENIVNTWQLRQ---SPSGNAAGTSDS 72
             ++Y +PP               GFF++YFC+CF++ +V  W+L     + S N     ++
Sbjct:    16 QHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQPEA 75

Query:    73 P-ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQ 131
             P  NPGL   +I +FP F YS+VKD R +KYGLECAICL EF+ D++LRLLT CYHVFHQ
Sbjct:    76 PPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQ 135

Query:   132 ECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKE 191
             ECIDLW ESH+TCPVCR DLD P       P +   + M  I      T +D      ++
Sbjct:   136 ECIDLWFESHRTCPVCRRDLDPPPPPENTKPTV---DEM--IIDVIQETSDDEEDDHHRQ 190

Query:   192 DEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVK 251
                 + D        + IK+ +     EKFSRSHSTGHS+   K E ED++TLRLPE+VK
Sbjct:   191 QTTTQIDTWPSSGQTSSIKKEQNLP--EKFSRSHSTGHSIVRNKPEEEDKYTLRLPEHVK 248

Query:   252 LKILRGHNWTGSCITFGEFGSPVTRNNVGFGDV 284
             +K+ RGH+ T SC+TF E       ++  FG+V
Sbjct:   249 IKVTRGHSQTESCVTFAELIRNRGYDHRRFGEV 281

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2178515 AT5G46650 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 120/281 (42%), Positives = 161/281 (57%)

Query:    16 ENYASPPXXXXXXXXXXXXXXXGFFSVYFCRCFMENIVNTWQLRQS---PSGNAAGTSDS 72
             ++Y+ PP               GFF++YFC+CF   +   W        P        + 
Sbjct:    18 QHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQQEP 77

Query:    73 ---PANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNIL-RLLTVCYHV 128
                P NPGL P +IQ++P F +S+VKD R  KYGLECAICL EFE+++IL RLLT CYHV
Sbjct:    78 VQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHV 137

Query:   129 FHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIF 188
             FHQECID WLES+KTCPVCR +LD P             N+  NI    +  +++  +  
Sbjct:   138 FHQECIDQWLESNKTCPVCRRNLD-P-------------NAPENIKELIIEVIQE--NAH 181

Query:   189 IKEDEEARGDNGEQVVNPNIIKQNER-YEKI-EKFSRSHSTGHSMHTTKNELEDRHTLRL 246
                D+E    + E +++      NER  E + +KFSRS +TGHS+   K E EDR+TLRL
Sbjct:   182 ENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNKPEEEDRYTLRL 241

Query:   247 PENVKLKILRGHN--WTGSCITFGEFGSPVTRNNVG-FGDV 284
             P++VK+K+ R HN   T SCI+FGE    + RN  G FG+V
Sbjct:   242 PDHVKIKVTRRHNNNQTESCISFGE----LVRNREGRFGEV 278

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2062502 AT2G35420 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 54/115 (46%), Positives = 77/115 (66%)

Query:    38 GFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDF 97
             GFFS++  +  +  +  TW L+++P G+    +  P N GL P +I++FP F YS+    
Sbjct:    38 GFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVATPPENTGLDPFIIRSFPVFHYSSAT-- 95

Query:    98 RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
              ++ +G ECAICL+EF D++ +RL+TVC H FH  CIDLW E HKTCPVCR +LD
Sbjct:    96 -KKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELD 149

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:4515102621 ATL1F [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 84/224 (37%), Positives = 120/224 (53%)

Query:    38 GFFSVYFCRCFMENIVNTW---QLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTV 94
             GFFS +FC C    ++  W   + R  PS N    S+ P N GL   +I++FP + YS V
Sbjct:    89 GFFSFFFCGCLFRKLMRIWNNHRNRNRPS-NLIQPSNPPENLGLDSKIIESFPEYPYS-V 146

Query:    95 KDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154
             KD        +C+ICL EF DD+ +RL++ C H FH  CIDLW E HKTCPVCR +LD+ 
Sbjct:   147 KDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVE 202

Query:   155 -QNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNE 213
              + SLEK PL      +      +     D ++I + E+  +      +  + + I+  E
Sbjct:   203 DRTSLEK-PLEVPEIDLVRSEIHDEPLPRDTVTIIVHEEHPSTTIGSLE--HTDEIESYE 259

Query:   214 RYEKIE--KFSRSHSTGHSMHT-TKNELEDRHTLRLPENVKLKI 254
             R  K    +F RSHSTGHS+   T+NE E+       E +K++I
Sbjct:   260 RRMKASNLRFWRSHSTGHSIVVKTENEQEEEEEEEKDE-IKIRI 302

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2096309 ATL6 "Arabidopsis toxicos en levadura 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 90/242 (37%), Positives = 123/242 (50%)

Query:    38 GFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSD-SPANPGLHPSLIQAFPAFAYSTVKD 96
             GFFS+YF  C    + +      SP+G A   +  + A  GL  S+++ FP F YS VK 
Sbjct:    64 GFFSIYFRHC--SGVPDAGV---SPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKT 118

Query:    97 FRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQN 156
              +  K  LECAICL EFEDD  LRLL  C HVFH  CID WLE+H TCPVCR++L     
Sbjct:   119 QKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL----- 173

Query:   157 SLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYE 216
                 +  +    S+    G     LE    + +  +        EQ+V   +  +     
Sbjct:   174 ----AEQVAEGESVE--PGGTEPDLE-LQQVVVNPEPVVTAPVPEQLVTSEVDSRRLPGV 226

Query:   217 KIE----KFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKILRGH--NWTGSCITFGEF 270
              ++    KFSRSH+TGHS+     E  +R TLRLPE+V+ +I++    N T S +     
Sbjct:   227 PVDLKRVKFSRSHTTGHSV-VQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRG 285

Query:   271 GS 272
             GS
Sbjct:   286 GS 287

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2146330 CNI1 "carbon/nitrogen insensitive 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 54/115 (46%), Positives = 66/115 (57%)

Query:    38 GFFSVYFCRCFMENIVNTWQLRQSPSGNAAG-TSDSPANPGLHPSLIQAFPAFAYSTVKD 96
             GFF+VY   C     V+      +P+G A    +++    GL    I+ FP F YS VK 
Sbjct:    60 GFFTVYIRHC--TGAVDG---SVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKT 114

Query:    97 FRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
              +  K  LECAICL EFEDD  LRLL  C HVFH  CI  WL+ H TCPVCR++L
Sbjct:   115 QKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL 169

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0043562 "cellular response to nitrogen levels" evidence=IMP

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 51/119 (42%), Positives = 72/119 (60%)

Query:    38 GFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDF 97
             G  SVY   C   N  ++ +  ++ + +  G+S      GL  +++++FP FAYS+VK+ 
Sbjct:    61 GLLSVYIRHCARSNPDSSTRYFRNRAND--GSS---RRGGLDNAVVESFPVFAYSSVKES 115

Query:    98 RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQN 156
             +     LECAICL E ED   +RLL +C H+FH +CID WL SH TCPVCRS+L    N
Sbjct:   116 KIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSN 174

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2044742 AT2G34990 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 61/155 (39%), Positives = 85/155 (54%)

Query:    77 GLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDL 136
             GL  ++I +FP F YS VK+ R    G+ECA+C+ EFED   LRL+  C HVFH +C+ +
Sbjct:    67 GLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSV 126

Query:   137 WLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEAR 196
             WL  H TCP+CR DL L     E+S L    N   ++  S  S L D ++ +   +  +R
Sbjct:   127 WLSDHSTCPLCRVDLCLQPG--ERSYL----NPEPDLVESTNSHLFDGVT-WTNRNRPSR 179

Query:   197 GDNGEQVVNPNIIKQNERYEKIEKFSRSHSTGHSM 231
               +         + Q  R  +I   SRSHSTGHS+
Sbjct:   180 SWSTR-------LSQC-RVSQI-LISRSHSTGHSV 205

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2044757 ATL9 "Arabidopsis toxicos en levadura 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/186 (38%), Positives = 101/186 (54%)

Query:    77 GLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDL 136
             GL    I+ FP F YS VK  R  K G+ECA+CL EFEDD  LRL+  C HVFH +C+D+
Sbjct:   106 GLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDV 165

Query:   137 WLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEAR 196
             WL  H TCP+CR+DL L Q   +       + S +      +S+  D     + E  +A 
Sbjct:   166 WLSEHSTCPLCRADLVLNQQGDDDDS----TESYSGTDPGTISSSTDPERGMVLESSDAH 221

Query:   197 GDNGEQVVNPNIIKQNERYE----KIEK--FSRSHSTGHSMHTTKNELEDRHTLRLPENV 250
               +     N NI  +++       +I    F RSHSTGHS+      L DR TLRLP++V
Sbjct:   222 LLDAVTWSNSNITPRSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNL-DRFTLRLPDDV 280

Query:   251 KLKILR 256
             + ++++
Sbjct:   281 RRQLMK 286

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2207026 AT1G72200 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 82/221 (37%), Positives = 117/221 (52%)

Query:    38 GFFSVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPAFAYSTVKDF 97
             GFFSVY  RC +E ++       + +GN   T+   A  GL  S+I+ FP F YSTVK  
Sbjct:    78 GFFSVYIRRC-LERVMGMDYGNPNDAGNWLATNRQQAR-GLDASIIETFPTFQYSTVKTL 135

Query:    98 RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL-DLPQN 156
             R  K  LEC++CL EFEDD  LRL+  C HVFH  CID WL SH TCP+CR+DL  +P  
Sbjct:   136 RIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGE 195

Query:   157 SLEKSPLLFRSNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNER-- 214
             S+    +      +N+  GS+ +   D I      D     ++     N ++ +++    
Sbjct:   196 SIVSIQI---PGLVNDPPGSDPNG--DRIRSLGSPDARLI-ESVALTCNQSMPRRSMSTG 249

Query:   215 YEKIEKFSRSHSTGHSMHTTKNELEDRHTLRLPENVKLKIL 255
             +     F+ S  TG   H+   E  DR TLRLP+++  K++
Sbjct:   250 WNLAGMFTNSDRTGQ--HS---ENLDRFTLRLPQDIHNKLV 285

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49691	ATL29_ARATH	No assigned EC number	0.4707	0.9155	0.9377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	9e-13
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-09
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	5e-08
smart00184	40	smart00184, RING, Ring finger	1e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	4e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	8e-05
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	3e-04
pfam12906	47	pfam12906, RINGv, RING-variant domain	4e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	5e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.001
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150
           EC ICL EFE    + +L  C HVFH+EC+D WL S  TCP+CR+ 
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDL 151
           EC ICL EF +     +L  C HVF + CID WL+S   TCP+CR+ +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 106 CAICLAEFEDDNIL---------RLLTVCYHVFHQECIDLWLESHKTCPVCR 148
           CAIC   F+               +   C H FH  CI  WL++  TCP+CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 98  RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDLP 154
                G+ECAIC++ F  ++ LR+L  C H FH  C+D WL  +   CPVCR+ +  P
Sbjct: 318 VEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRS 149
           LEC ICL    D  +L   T C HVF +ECI  +L+    CP+CR+
Sbjct: 3   LECPICLDLLRDPVVL---TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 95  KDFRRQKYGLECAICLAEFEDDNI----LRLLTVCYHVFHQECIDLWLESHKTCPVCR 148
           K + R K   ECAIC+ +  D  I      +L+ C HVF  ECID+W +   TCPVCR
Sbjct: 167 KLYNRSK-DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVC 147
           C ICL E+  D    +L  C H F + CI  WLES   TCP+C
Sbjct: 1   CPICLEEYLKD--PVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVC 147
           C ICL E +D   + +L  C H+F  +CI  WLES + TCP+C
Sbjct: 1   CPICLEEPKD--PVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 106 CAICLAE-FEDDN---------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
           C IC+ E F  D+           + L  C H+ H  C+  WLE  +TCP+CR  +
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 12/55 (21%)

Query: 106 CAICLAEFED------------DNILRLLTVCYHVFHQECIDLWLESHKTCPVCR 148
           CAIC                  D    +  VC H FH  CI  WL++   CP+ R
Sbjct: 23  CAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 106 CAICLAEFEDDNILRLLTVC---YHVFHQECIDLWL-ESH-KTCPVCR 148
           C IC  E ++ + L     C       HQEC++ W+ ES  KTC +C+
Sbjct: 2   CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 106 CAICLAEFEDDNILRLLTVCY---HVFHQECIDLWLESH--KTCPVC 147
           C ICL   E+D  L     C       HQ C++ WL++    TC +C
Sbjct: 1   CRICLEGEEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 12/55 (21%)

Query: 106 CAICLAEFED---------DNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCR 148
           C IC   F+          D+   +   C H FH  CI  WL    S   CP+CR
Sbjct: 24  CGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPL 163
           L C IC         +   T C H F   CI   L +   CPVCR D   P  S  +   
Sbjct: 26  LRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGTQPFCPVCRED---PCESRLRGSS 78

Query: 164 LFR 166
             R
Sbjct: 79  GSR 81

Length = 391

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 91  YSTVKDFRRQKYGLECAICL-----AEFEDDNILRLLTVCYHVFHQECIDLWLESHK--- 142
           Y  V    ++K   EC IC         E+D    LL  C H+F   CI++W  + +   
Sbjct: 161 YEDVYRVSKEK---ECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG 217

Query: 143 ---TCPVCRS 149
               CP+CR+
Sbjct: 218 ASDNCPICRT 227

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.75
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.52
PHA02929	238	N1R/p28-like protein; Provisional	99.37
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.3
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.28
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.27
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.96
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.92
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.92
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.91
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.87
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.84
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.81
PHA02926	242	zinc finger-like protein; Provisional	98.8
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.77
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.75
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.75
PF14634	44	zf-RING_5: zinc-RING finger domain	98.73
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.7
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.67
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.66
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.65
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.45
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.45
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.29
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.26
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.19
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.18
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.16
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.15
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.1
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.05
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.01
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.95
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.93
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.79
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.76
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.76
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.73
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.53
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.44
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.23
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.13
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.09
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.0
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.85
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.66
KOG2660	331	consensus Locus-specific chromosome binding protei	96.6
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.42
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.22
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.16
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.12
COG5152	259	Uncharacterized conserved protein, contains RING a	96.03
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.94
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.87
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.77
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.63
PHA02862	156	5L protein; Provisional	95.59
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.57
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.57
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.45
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.43
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.28
PHA03096	284	p28-like protein; Provisional	95.25
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.17
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.86
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.8
PF04641	260	Rtf2: Rtf2 RING-finger	94.59
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.53
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	94.19
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.16
KOG4739	233	consensus Uncharacterized protein involved in syna	94.1
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.82
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.73
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.12
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	92.89
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.71
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.12
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	90.64
KOG1940	276	consensus Zn-finger protein [General function pred	90.56
KOG1001	674	consensus Helicase-like transcription factor HLTF/	89.94
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	88.94
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	87.8
KOG0298	1394	consensus DEAD box-containing helicase-like transc	87.71
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	87.25
PF03869	50	Arc: Arc-like DNA binding domain; InterPro: IPR005	86.78
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	86.09
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	85.66
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	85.57
KOG1609	323	consensus Protein involved in mRNA turnover and st	85.19
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	84.72
KOG3002	299	consensus Zn finger protein [General function pred	84.61
COG5175	480	MOT2 Transcriptional repressor [Transcription]	84.34
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.89
KOG3053	293	consensus Uncharacterized conserved protein [Funct	83.18
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	83.08
KOG0825	1134	consensus PHD Zn-finger protein [General function	81.25
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	80.66
KOG1829	580	consensus Uncharacterized conserved protein, conta	80.58
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	80.43
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	80.18

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.4e-18  Score=162.26  Aligned_cols=79  Identities=37%  Similarity=0.789  Sum_probs=67.1

Q ss_pred             CCCCCHHHHhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhcCCC-CCCcCcCCCC
Q 047079           75 NPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKT-CPVCRSDLDL  153 (296)
Q Consensus        75 ~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~t-CP~CR~~~~~  153 (296)
                      .+.+.+..+.++|...|....+....   ..|+|||++|..++.+|.|| |+|.||..|||+||..+.+ ||+|++++..
T Consensus       204 ~~r~~k~~l~~~p~~~f~~~~~~~~~---~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  204 RNRLIKRLLKKLPVRTFTKGDDEDAT---DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             hhhhHHHHHhhCCcEEeccccccCCC---ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            35788999999999999876654332   68999999999999999999 9999999999999987755 9999998865


Q ss_pred             CCCC
Q 047079          154 PQNS  157 (296)
Q Consensus       154 ~~~~  157 (296)
                      +...
T Consensus       280 ~~~~  283 (348)
T KOG4628|consen  280 DSGS  283 (348)
T ss_pred             CCCC
Confidence            5443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.52  E-value=4.4e-15  Score=100.47  Aligned_cols=43  Identities=56%  Similarity=1.244  Sum_probs=40.2

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCR  148 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR  148 (296)
                      +|+||++.|..++.+..++ |+|+||.+||..|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            6999999999988899998 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.37  E-value=4.4e-13  Score=121.56  Aligned_cols=76  Identities=33%  Similarity=0.703  Sum_probs=59.1

Q ss_pred             CCCCHHHHhhCCcccccchhhhhcccCCccccccccccccCce----eEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079           76 PGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNI----LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL  151 (296)
Q Consensus        76 ~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~  151 (296)
                      .+..+..++.+|.+...-.... ....+.+|+||++.+.++..    +..++.|+|.||..||..|++.+.+||+||..+
T Consensus       148 ~~~~~~~i~~lp~vl~~~e~~~-~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        148 GKNYKKFLKTIPSVLSEYEKLY-NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             cchhHHHHHhcchhhhhhhhhh-cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            4668889999999875543222 22346799999999876542    345556999999999999999999999999887


Q ss_pred             C
Q 047079          152 D  152 (296)
Q Consensus       152 ~  152 (296)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            5

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.30  E-value=1.1e-12  Score=98.53  Aligned_cols=46  Identities=41%  Similarity=0.895  Sum_probs=36.1

Q ss_pred             CCccccccccccccC----------ceeEEecccCceechhhhHHHHhcCCCCCCcC
Q 047079          102 YGLECAICLAEFEDD----------NILRLLTVCYHVFHQECIDLWLESHKTCPVCR  148 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~----------~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR  148 (296)
                      .+..|+||++.|.+.          -.+... .|+|.||..||.+||+.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            345699999999432          234444 4999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.1e-11  Score=116.76  Aligned_cols=68  Identities=31%  Similarity=0.725  Sum_probs=50.4

Q ss_pred             HHHHhhCCcccccchhhhhcccCCccccccccc-cccC---------ceeEEecccCceechhhhHHHHhcCCCCCCcCc
Q 047079           80 PSLIQAFPAFAYSTVKDFRRQKYGLECAICLAE-FEDD---------NILRLLTVCYHVFHQECIDLWLESHKTCPVCRS  149 (296)
Q Consensus        80 ~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~  149 (296)
                      ++.-+.+|+..-.+     ..+++..|+||+++ |+.+         ...+.|| |||+||.+|++.|+++++|||+||.
T Consensus       269 kdl~~~~~t~t~eq-----l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~  342 (491)
T COG5243         269 KDLNAMYPTATEEQ-----LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRR  342 (491)
T ss_pred             hHHHhhcchhhhhh-----hcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccC
Confidence            33444455554332     24467899999999 5544         2345788 9999999999999999999999999


Q ss_pred             CCCC
Q 047079          150 DLDL  153 (296)
Q Consensus       150 ~~~~  153 (296)
                      ++..
T Consensus       343 p~if  346 (491)
T COG5243         343 PVIF  346 (491)
T ss_pred             cccc
Confidence            9543

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.3e-12  Score=118.52  Aligned_cols=51  Identities=45%  Similarity=1.045  Sum_probs=46.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      .+.+|+|||+.|...+.++.|| |.|.||..||++|+. -+..||+||.++.+
T Consensus       322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            5689999999999999999999 999999999999998 56679999999865

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.96  E-value=4.9e-10  Score=74.13  Aligned_cols=44  Identities=55%  Similarity=1.216  Sum_probs=36.1

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDL  151 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~  151 (296)
                      +|+||++.+.  +.+.+.+ |+|.||..|+..|++. ...||+||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999983  3344444 9999999999999997 77899998754

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.92  E-value=8.3e-10  Score=72.68  Aligned_cols=39  Identities=46%  Similarity=1.087  Sum_probs=32.5

Q ss_pred             ccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~C  147 (296)
                      |+||++.+.++  +..++ |||+||..||.+|++.+.+||+|
T Consensus         1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            89999998873  44565 99999999999999998899998

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.92  E-value=7e-10  Score=97.27  Aligned_cols=48  Identities=35%  Similarity=0.825  Sum_probs=39.4

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----------------CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----------------HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----------------~~tCP~CR~~~~~  153 (296)
                      +..+|+||++.+.++.   +++ |||+||..||..|+..                ...||+||..+..
T Consensus        17 ~~~~CpICld~~~dPV---vT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         17 GDFDCNICLDQVRDPV---VTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CccCCccCCCcCCCcE---EcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            5689999999987763   344 9999999999999852                3479999999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.91  E-value=1e-09  Score=76.15  Aligned_cols=46  Identities=39%  Similarity=0.937  Sum_probs=38.1

Q ss_pred             CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      +..|.||++...+   +.++| |||. ||..|+..|++....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            3579999998543   55667 9999 999999999999999999999874

...

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=9.2e-10  Score=94.63  Aligned_cols=51  Identities=31%  Similarity=0.681  Sum_probs=43.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ....|+|||+.|++...+.  .+|||+||..||..-++....||+||+.++.+
T Consensus       130 ~~~~CPiCl~~~sek~~vs--TkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVS--TKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhhccccc--cccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            4578999999998876542  35999999999999999999999999988643

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.84  E-value=1.6e-09  Score=83.06  Aligned_cols=50  Identities=32%  Similarity=0.759  Sum_probs=38.7

Q ss_pred             Ccccccccccccc--------Cc-eeEEecccCceechhhhHHHHhc---CCCCCCcCcCCC
Q 047079          103 GLECAICLAEFED--------DN-ILRLLTVCYHVFHQECIDLWLES---HKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~--------~~-~~r~lp~C~H~Fh~~CI~~Wl~~---~~tCP~CR~~~~  152 (296)
                      +..|.||...|+.        ++ -..++..|+|.||..||.+||.+   +..||+||+...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5789999999883        11 12234469999999999999985   467999998764

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.9e-09  Score=98.97  Aligned_cols=49  Identities=27%  Similarity=0.714  Sum_probs=42.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ....|.+||+..+++.   .+| |||+||..||..|+..+..||+||..+.+.
T Consensus       238 a~~kC~LCLe~~~~pS---aTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPS---ATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCceEEEecCCCCCC---cCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            4478999999987764   455 999999999999999999999999988653

>PHA02926 zinc finger-like protein; Provisional

Probab=98.80  E-value=2.3e-09  Score=95.34  Aligned_cols=51  Identities=31%  Similarity=0.854  Sum_probs=40.1

Q ss_pred             CCccccccccccccC-----ceeEEecccCceechhhhHHHHhcC------CCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDD-----NILRLLTVCYHVFHQECIDLWLESH------KTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~-----~~~r~lp~C~H~Fh~~CI~~Wl~~~------~tCP~CR~~~~  152 (296)
                      .+.+|+|||+...+.     ....+|+.|+|.||..||..|...+      .+||+||..+.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            457999999987443     1234677799999999999999753      35999998775

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.6e-09  Score=93.86  Aligned_cols=51  Identities=31%  Similarity=0.791  Sum_probs=40.8

Q ss_pred             ccCCccccccccccccCceeEEecccCceechhhhHHHHhc---CCCCCCcCcCCCCC
Q 047079          100 QKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES---HKTCPVCRSDLDLP  154 (296)
Q Consensus       100 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~---~~tCP~CR~~~~~~  154 (296)
                      .....+|.|||+.-+++...   . |||.||..||.+||..   .+.||+|+..+...
T Consensus        44 ~~~~FdCNICLd~akdPVvT---l-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVT---L-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCCceeeeeeccccCCCEEe---e-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            44678999999997776432   2 9999999999999975   34599999988643

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.75  E-value=5.3e-09  Score=69.20  Aligned_cols=39  Identities=49%  Similarity=1.161  Sum_probs=33.5

Q ss_pred             ccccccccccCceeEEecccCceechhhhHHHHh--cCCCCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE--SHKTCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~--~~~tCP~C  147 (296)
                      |+||++.+.++.  .+++ |+|.||..||..|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988775  4555 999999999999998  55679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3.1e-09  Score=107.49  Aligned_cols=52  Identities=37%  Similarity=0.804  Sum_probs=45.3

Q ss_pred             CCccccccccccccCce--eEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNI--LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~--~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      .+..|+||++++..+..  .+.|| |+|+||..|+..|+++.++||.||..+...
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            46789999999998754  66787 999999999999999999999999965543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.73  E-value=6.7e-09  Score=70.19  Aligned_cols=44  Identities=30%  Similarity=0.883  Sum_probs=37.8

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCc
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRS  149 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~  149 (296)
                      .|.||++.|.+....++++ |||+||..||..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996566677776 9999999999999867778999985

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.70  E-value=7.2e-09  Score=69.54  Aligned_cols=38  Identities=37%  Similarity=0.885  Sum_probs=29.2

Q ss_pred             ccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~C  147 (296)
                      |+||++.|.++..+   + |||+|+..||..|++..    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l---~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL---P-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE----S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcccc---C-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999998654   3 99999999999999753    469988

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.67  E-value=1e-08  Score=76.97  Aligned_cols=50  Identities=36%  Similarity=0.733  Sum_probs=38.6

Q ss_pred             cccccccccccc------------CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          104 LECAICLAEFED------------DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       104 ~~C~ICl~~~~~------------~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      +.|+||...|.+            ++-...-..|.|.||..||.+||.++..||+||+....
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            568888877753            22222333599999999999999999999999988754

>smart00184 RING Ring finger

Probab=98.66  E-value=1.7e-08  Score=64.40  Aligned_cols=38  Identities=45%  Similarity=1.117  Sum_probs=31.8

Q ss_pred             ccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~C  147 (296)
                      |+||++..   .....++ |+|.||..|++.|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999883   3455666 999999999999998 66779988

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=98.65  E-value=2.1e-08  Score=72.15  Aligned_cols=45  Identities=31%  Similarity=0.544  Sum_probs=39.6

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ..|+||++.+.++.   +++ |||+|+..||.+|++.+.+||+|+..+.
T Consensus         2 ~~Cpi~~~~~~~Pv---~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDPV---ILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCCE---ECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            57999999999873   345 9999999999999999999999998874

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=4.2e-08  Score=89.36  Aligned_cols=54  Identities=33%  Similarity=0.716  Sum_probs=44.6

Q ss_pred             ccCCccccccccccccCc-------eeEEecccCceechhhhHHHH--hcCCCCCCcCcCCCCC
Q 047079          100 QKYGLECAICLAEFEDDN-------ILRLLTVCYHVFHQECIDLWL--ESHKTCPVCRSDLDLP  154 (296)
Q Consensus       100 ~~~~~~C~ICl~~~~~~~-------~~r~lp~C~H~Fh~~CI~~Wl--~~~~tCP~CR~~~~~~  154 (296)
                      ..++..|+||-..+...+       .+-.|. |+|+||..||.-|.  .++++||.|+..++..
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            336779999999987665       566776 99999999999996  5788999998888653

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.45  E-value=1e-07  Score=92.51  Aligned_cols=48  Identities=33%  Similarity=0.711  Sum_probs=41.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|..+.   +++ |+|.||..||..|+.....||+||..+..
T Consensus        25 ~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            4579999999998774   345 99999999999999988899999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1e-07  Score=74.99  Aligned_cols=50  Identities=32%  Similarity=0.697  Sum_probs=38.4

Q ss_pred             Ccccccccccccc-------------CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFED-------------DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~-------------~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+.|+||...+-+             ++-+..-..|+|.||..||.+||++++.||+|-++..
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV  108 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence            4679998876542             2223334459999999999999999999999977654

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=8.5e-08  Score=71.52  Aligned_cols=51  Identities=33%  Similarity=0.826  Sum_probs=37.8

Q ss_pred             CCcccccccccccc---------CceeEEecccCceechhhhHHHHhc---CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFED---------DNILRLLTVCYHVFHQECIDLWLES---HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~---------~~~~r~lp~C~H~Fh~~CI~~Wl~~---~~tCP~CR~~~~  152 (296)
                      .+..|-||.-.|..         ++-.-++..|.|.||..||.+|+..   +.-||+||+...
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            44589999988873         2211234459999999999999964   456999998764

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.7e-07  Score=86.32  Aligned_cols=52  Identities=35%  Similarity=0.904  Sum_probs=38.6

Q ss_pred             CCccccccccccccCc----------ee---EEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDN----------IL---RLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~----------~~---r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~  153 (296)
                      ...+|+||+..+.--.          .+   .++.+|.|+||..|+..|....+ .||+||+++.+
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3468999998876311          11   12334999999999999999554 89999999853

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.26  E-value=6.4e-07  Score=62.08  Aligned_cols=42  Identities=36%  Similarity=0.864  Sum_probs=32.1

Q ss_pred             cccccccccccCceeEEecccC-----ceechhhhHHHHhc--CCCCCCcC
Q 047079          105 ECAICLAEFEDDNILRLLTVCY-----HVFHQECIDLWLES--HKTCPVCR  148 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~-----H~Fh~~CI~~Wl~~--~~tCP~CR  148 (296)
                      .|.||++.. +++....+| |.     |.+|..|+..|+..  ..+||+|.
T Consensus         1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            499999943 344444677 85     99999999999964  44799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=5.9e-07  Score=81.87  Aligned_cols=49  Identities=29%  Similarity=0.705  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHH-HHhcCCC-CCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDL-WLESHKT-CPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~-Wl~~~~t-CP~CR~~~~~~  154 (296)
                      .+..|+||++..+.+   ..++ |||+||..||-. |-..+.- ||+||+.+.+.
T Consensus       214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            467899999997665   3455 999999999999 9877665 99999988654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.18  E-value=1.2e-06  Score=59.09  Aligned_cols=38  Identities=32%  Similarity=0.784  Sum_probs=22.3

Q ss_pred             ccccccccccCc-eeEEecccCceechhhhHHHHhcC----CCCC
Q 047079          106 CAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESH----KTCP  145 (296)
Q Consensus       106 C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP  145 (296)
                      |+||++ |..++ .-.+|+ |||+|+.+||.+|+++.    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86644 446677 99999999999999843    3577

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=9.6e-07  Score=86.90  Aligned_cols=47  Identities=32%  Similarity=0.697  Sum_probs=38.2

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhc-----CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~~~~~  153 (296)
                      +..|+|||+....+..+    .|||+||..||-++|..     ...||+||..+.+
T Consensus       186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            67899999997665433    39999999999999864     3469999998875

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.15  E-value=5.8e-07  Score=66.86  Aligned_cols=50  Identities=34%  Similarity=0.706  Sum_probs=23.6

Q ss_pred             Cccccccccccc-cCce-eEEe--cccCceechhhhHHHHhc----C-------CCCCCcCcCCC
Q 047079          103 GLECAICLAEFE-DDNI-LRLL--TVCYHVFHQECIDLWLES----H-------KTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~-~~~~-~r~l--p~C~H~Fh~~CI~~Wl~~----~-------~tCP~CR~~~~  152 (296)
                      +.+|.||+..+. .+.. ..+-  +.|++.||..||.+||..    +       .+||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            358999999876 3322 1222  369999999999999963    1       15999998875

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.10  E-value=6e-07  Score=93.19  Aligned_cols=51  Identities=31%  Similarity=0.758  Sum_probs=39.1

Q ss_pred             CCccccccccccccCc---eeEEecccCceechhhhHHHHhc--CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDN---ILRLLTVCYHVFHQECIDLWLES--HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~---~~r~lp~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~~~  152 (296)
                      +-.+||||+..+..-+   .-...++|.|.||..|+-+|+++  +.+||+||..+.
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            5679999999887322   11233469999999999999985  567999997764

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=9.5e-07  Score=79.58  Aligned_cols=44  Identities=41%  Similarity=0.860  Sum_probs=38.8

Q ss_pred             cCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcC
Q 047079          101 KYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCR  148 (296)
Q Consensus       101 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR  148 (296)
                      .....|+||++.|.++   .+++ |+|.||..||..|+.....||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            3568999999999998   5666 999999999999998556799999

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.05  E-value=2.4e-06  Score=63.90  Aligned_cols=47  Identities=30%  Similarity=0.459  Sum_probs=36.3

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      .+.|+||.+.|.++..   ++ |||+|...||..||.. +.+||+|+..+..
T Consensus         4 ~f~CpIt~~lM~dPVi---~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGELMRDPVI---LP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB-SSEEE---ET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcHhhCcee---CC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            4689999999998853   45 9999999999999998 8899999988863

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.01  E-value=4e-06  Score=78.69  Aligned_cols=52  Identities=27%  Similarity=0.622  Sum_probs=36.7

Q ss_pred             CccccccccccccCceeEEe-cccCceechhhhHHHHh-cCCCCCCcCcCCCCC
Q 047079          103 GLECAICLAEFEDDNILRLL-TVCYHVFHQECIDLWLE-SHKTCPVCRSDLDLP  154 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~l-p~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~~  154 (296)
                      +..|+||...-...-.++++ ..|||.||..||+..+. ....||.|+..+...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            35799999863332222222 24999999999999664 456799999887643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.95  E-value=3e-06  Score=78.15  Aligned_cols=46  Identities=37%  Similarity=0.655  Sum_probs=39.4

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~  151 (296)
                      .-+.|-||-+-|..+    ++..|||.||.-||...|..+..||+||.+.
T Consensus        24 s~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~   69 (391)
T COG5432          24 SMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDP   69 (391)
T ss_pred             hHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccH
Confidence            456899998888765    3445999999999999999999999999864

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=3.2e-06  Score=80.68  Aligned_cols=45  Identities=36%  Similarity=0.998  Sum_probs=35.8

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhc---CCCCCCcC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES---HKTCPVCR  148 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~---~~tCP~CR  148 (296)
                      .+|.||.+-+-....+.-+..|||+||..|+.+|++.   +.+||+|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            4799995555555566656569999999999999985   35799998

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.79  E-value=5.6e-06  Score=77.84  Aligned_cols=47  Identities=30%  Similarity=0.665  Sum_probs=40.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .-+.|.||.+-|..+.   ++| |+|.||.-||..+|..+..||.|+..+.
T Consensus        22 ~lLRC~IC~eyf~ip~---itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPM---ITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHhHHHHHhcCce---ecc-ccchHHHHHHHHHhccCCCCCceecccc
Confidence            4478999999998763   334 9999999999999999999999998775

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.76  E-value=9.9e-06  Score=58.87  Aligned_cols=45  Identities=33%  Similarity=0.711  Sum_probs=24.1

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ...|++|.+.+..+..+.   .|.|+||..||..-+..  -||+|+.+..
T Consensus         7 lLrCs~C~~~l~~pv~l~---~CeH~fCs~Ci~~~~~~--~CPvC~~Paw   51 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLG---GCEHIFCSSCIRDCIGS--ECPVCHTPAW   51 (65)
T ss_dssp             TTS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S
T ss_pred             hcCCcHHHHHhcCCceec---cCccHHHHHHhHHhcCC--CCCCcCChHH
Confidence            467999999998875443   69999999999886554  3999987764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.76  E-value=9.9e-06  Score=78.65  Aligned_cols=49  Identities=31%  Similarity=0.726  Sum_probs=38.4

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      +...|+|||+-+.....-.+...|.|.||..|+..|.  ..+||+||....
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            4568999999998766322223499999999999995  457999998776

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.73  E-value=5.1e-06  Score=85.05  Aligned_cols=49  Identities=29%  Similarity=0.577  Sum_probs=41.7

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ...|++|+..+.++......+ |+|+||..||+.|-+..+|||+||..+.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence            356889988888776655555 9999999999999999999999998764

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=2.8e-05  Score=73.82  Aligned_cols=48  Identities=31%  Similarity=0.731  Sum_probs=40.2

Q ss_pred             cCCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          101 KYGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       101 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      +.+.+|.|||.+-   ..+.+|| |.|. .|..|.+.---.++.||+||+++.
T Consensus       288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchH
Confidence            3467999999984   3466788 9998 999999987667888999999885

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.3e-05  Score=74.87  Aligned_cols=52  Identities=31%  Similarity=0.787  Sum_probs=40.8

Q ss_pred             CCccccccccccccCc----eeEEecccCceechhhhHHHHh--c-----CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDN----ILRLLTVCYHVFHQECIDLWLE--S-----HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~----~~r~lp~C~H~Fh~~CI~~Wl~--~-----~~tCP~CR~~~~~  153 (296)
                      .+.+|.||++...+..    ...+||+|.|.||..||+.|=.  .     ...||.||.....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            4678999999877654    2446788999999999999973  3     4679999987653

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.53  E-value=4.1e-05  Score=73.49  Aligned_cols=48  Identities=29%  Similarity=0.798  Sum_probs=39.0

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhc--CCCCCCcCcCCCCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--HKTCPVCRSDLDLPQ  155 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~~~~~~  155 (296)
                      .-|-||-+.   +..+++-| |||..|..|+..|-..  .++||.||..+...+
T Consensus       370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            469999776   55677777 9999999999999854  578999999886533

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=9.7e-06  Score=76.67  Aligned_cols=49  Identities=31%  Similarity=0.628  Sum_probs=40.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      .++.|+|||+.+.....   .+.|.|.||.+||..-++ .+++||-||+.+..
T Consensus        42 ~~v~c~icl~llk~tmt---tkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMT---TKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhccHHHHHHHHhhcc---cHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            56789999999876543   347999999999999987 46789999998864

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.44  E-value=3.1e-05  Score=71.90  Aligned_cols=55  Identities=31%  Similarity=0.742  Sum_probs=44.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc-----------------------CCCCCCcCcCCCCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----------------------HKTCPVCRSDLDLPQNS  157 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----------------------~~tCP~CR~~~~~~~~~  157 (296)
                      ...+|.|||.-|.+.+....++ |.|+||..|+.++|.-                       ...||+||..+......
T Consensus       114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s  191 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS  191 (368)
T ss_pred             CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence            3468999999999999888887 9999999999988721                       23599999988765443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=3e-05  Score=54.44  Aligned_cols=47  Identities=30%  Similarity=0.617  Sum_probs=34.3

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHH-HHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDL-WLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~-Wl~~~~tCP~CR~~~~  152 (296)
                      .+.+|.||++.-.+.   .+. .|||. .|.+|-.+ |-..+..||+||+++.
T Consensus         6 ~~dECTICye~pvds---VlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    6 WSDECTICYEHPVDS---VLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cccceeeeccCcchH---HHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            347999999874433   223 49997 88899554 5458899999999863

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00022  Score=63.93  Aligned_cols=57  Identities=30%  Similarity=0.749  Sum_probs=46.9

Q ss_pred             cccCCccccccccccccCceeEEecccCceechhhhHHHHhc--------CCCCCCcCcCCCCCCCC
Q 047079           99 RQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--------HKTCPVCRSDLDLPQNS  157 (296)
Q Consensus        99 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~CR~~~~~~~~~  157 (296)
                      ..+....|..|--.+..++.+|+  .|-|+||.+|+++|-..        ...||.|-.+++++...
T Consensus        46 DsDY~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl  110 (299)
T KOG3970|consen   46 DSDYNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL  110 (299)
T ss_pred             hcCCCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence            34466789999999999999986  39999999999999753        23599999999987543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.23  E-value=0.00012  Score=52.25  Aligned_cols=42  Identities=38%  Similarity=0.725  Sum_probs=28.0

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc--CCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--HKTCPV  146 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--~~tCP~  146 (296)
                      ....|+|.+..|.++..-+   .|+|+|-.+.|.+||++  ...||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~---~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSK---KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEES---SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcC---CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4578999999999885433   49999999999999944  445998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00026  Score=68.29  Aligned_cols=48  Identities=33%  Similarity=0.882  Sum_probs=36.4

Q ss_pred             CccccccccccccCceeE-EecccCceechhhhHHHHhc--CCCCCCcCcC
Q 047079          103 GLECAICLAEFEDDNILR-LLTVCYHVFHQECIDLWLES--HKTCPVCRSD  150 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r-~lp~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~  150 (296)
                      +..|+|||+.+......+ ..+.|+|.|...||..||.+  ...||.|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            468999999998654332 34459999999999999952  2349999654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.13  E-value=0.00012  Score=70.32  Aligned_cols=47  Identities=34%  Similarity=0.815  Sum_probs=39.7

Q ss_pred             CCccccccccccc-cCceeEEecccCceechhhhHHHHhcCC--CCCCcCc
Q 047079          102 YGLECAICLAEFE-DDNILRLLTVCYHVFHQECIDLWLESHK--TCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~--tCP~CR~  149 (296)
                      .++-|..|-+.+- .++.+.-|| |.|+||..|+...|.++.  +||.||+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4678999998885 456788898 999999999999998654  6999984

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.09  E-value=0.00026  Score=69.19  Aligned_cols=51  Identities=33%  Similarity=0.699  Sum_probs=43.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ  155 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~~  155 (296)
                      ..+.|++|...+.++...  . .|||.||..||..|+..+..||.|+..+....
T Consensus        20 ~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             ccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence            557899999999988654  2 49999999999999999999999998876543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00031  Score=65.45  Aligned_cols=47  Identities=36%  Similarity=0.617  Sum_probs=37.3

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      ..+|+||+....-+   ..|+ |+|.||..||.--.++ ..+|++||.+++.
T Consensus         7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            35899999986665   3345 9999999999976654 5569999999864

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00038  Score=71.73  Aligned_cols=48  Identities=31%  Similarity=0.782  Sum_probs=37.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      +-+.|++|-.-..+-.    +++|+|+||..||..-+. ++..||.|-+.+.+
T Consensus       642 ~~LkCs~Cn~R~Kd~v----I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAV----ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchhhHH----HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            4578999986655432    335999999999999997 45679999887753

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.00084  Score=65.54  Aligned_cols=48  Identities=31%  Similarity=0.722  Sum_probs=41.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      .+++|.||+..+..+...   | |||.||..||++-+....-||.||..+..
T Consensus        83 sef~c~vc~~~l~~pv~t---p-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   83 SEFECCVCSRALYPPVVT---P-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             chhhhhhhHhhcCCCccc---c-ccccccHHHHHHHhccCCCCccccccccc
Confidence            568999999998887543   5 99999999999977777779999998864

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.60  E-value=0.00056  Score=64.43  Aligned_cols=49  Identities=29%  Similarity=0.655  Sum_probs=41.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|.+|-.-|.+...+.   .|-|.||..||...|....+||.|...+-.
T Consensus        14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            4568999999888876654   599999999999999999999999876643

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.42  E-value=0.0013  Score=65.55  Aligned_cols=48  Identities=35%  Similarity=0.718  Sum_probs=38.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-----cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~~~~  153 (296)
                      +..+|.+|-+.-++....+    |.|.||.-||.++..     .+.+||.|...|..
T Consensus       535 ~~~~C~lc~d~aed~i~s~----ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESS----CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             CceeecccCChhhhhHhhh----hhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            6689999998866654443    999999999999974     35689999887754

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0086  Score=56.56  Aligned_cols=47  Identities=26%  Similarity=0.443  Sum_probs=38.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~  151 (296)
                      ....|+||+.....+..+.   .-|-+||..||..++.+++.||+=..+.
T Consensus       299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            4568999999988776554   2699999999999999999999865544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.16  E-value=0.0019  Score=53.78  Aligned_cols=45  Identities=22%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             CccccccccccccCceeEEecccC------ceechhhhHHHHhcCCCCCCcC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCY------HVFHQECIDLWLESHKTCPVCR  148 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~------H~Fh~~CI~~Wl~~~~tCP~CR  148 (296)
                      ..+|+||++.+...+-+..++ |+      |.||.+|+.+|-+.+..=|.=|
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR   76 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNR   76 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence            579999999999833344444 54      8999999999954444444433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.12  E-value=0.0038  Score=42.72  Aligned_cols=40  Identities=33%  Similarity=0.948  Sum_probs=26.9

Q ss_pred             ccccccccccCceeEEecccC-----ceechhhhHHHHh--cCCCCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCY-----HVFHQECIDLWLE--SHKTCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~-----H~Fh~~CI~~Wl~--~~~tCP~C  147 (296)
                      |-||++.-.++..+. .| |.     -..|..|+..|+.  ...+|++|
T Consensus         1 CrIC~~~~~~~~~li-~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLI-SP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE--S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCcee-cc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999877766332 33 63     3789999999997  45669988

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.03  E-value=0.0024  Score=56.35  Aligned_cols=47  Identities=23%  Similarity=0.482  Sum_probs=40.0

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      -.+.|.||-.+|..+...    .|||.||..|...-++...+|-+|.+...
T Consensus       195 IPF~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         195 IPFLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             Cceeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhhc
Confidence            346899999999988654    39999999999998888999999987653

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.0029  Score=54.13  Aligned_cols=28  Identities=32%  Similarity=0.820  Sum_probs=26.0

Q ss_pred             CccccccccccccCceeEEecccCceech
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQ  131 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~  131 (296)
                      .-+|.|||++++.++.+..|| |-.+||+
T Consensus       177 kGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  177 KGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             CCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            368999999999999999999 9999996

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.87  E-value=0.0035  Score=65.40  Aligned_cols=49  Identities=37%  Similarity=0.809  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC-------CCCCCcCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-------KTCPVCRSD  150 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-------~tCP~CR~~  150 (296)
                      ...+|.||++.+.....+.--..|-|+||..||..|-.+.       -.||.|...
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            5689999999999888777666799999999999998541       249999843

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.007  Score=55.90  Aligned_cols=48  Identities=23%  Similarity=0.488  Sum_probs=36.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc--CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~~~  152 (296)
                      .+.+|++|-+.=..+-.  +. +|+|+||..||..=+..  ..+||.|-.++.
T Consensus       238 ~~~~C~~Cg~~PtiP~~--~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHV--IG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCee--ec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            56899999887555433  33 49999999999987654  478999987765

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.63  E-value=0.0075  Score=66.03  Aligned_cols=67  Identities=25%  Similarity=0.594  Sum_probs=46.1

Q ss_pred             hhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhc-----C-----CCCCCcCcCCCC
Q 047079           84 QAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----H-----KTCPVCRSDLDL  153 (296)
Q Consensus        84 ~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----~-----~tCP~CR~~~~~  153 (296)
                      .-||-+......  .+++.++.|-||.-+--.......|. |+|+||..|...-|++     +     ..||+|..++..
T Consensus      3469 ~CLPCl~Cdks~--tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSA--TKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hcccccccChhh--hhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            446666644322  24557789999987655444455565 9999999999866554     2     269999988754

>PHA02862 5L protein; Provisional

Probab=95.59  E-value=0.0071  Score=50.89  Aligned_cols=46  Identities=28%  Similarity=0.789  Sum_probs=34.0

Q ss_pred             CccccccccccccCceeEEeccc-----CceechhhhHHHHhc--CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVC-----YHVFHQECIDLWLES--HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C-----~H~Fh~~CI~~Wl~~--~~tCP~CR~~~~~  153 (296)
                      +..|-||+++-.++  +  -| |     ....|.+|+.+|+..  +.+|++|+.+...
T Consensus         2 ~diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            35799999985433  2  23 5     457999999999964  4569999987653

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.0064  Score=58.98  Aligned_cols=49  Identities=24%  Similarity=0.618  Sum_probs=39.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc--------CCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--------HKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~CR~~~  151 (296)
                      .-..|.||+++..-..-...+| |+|+||..|+..++..        .-.||-|...=
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~  239 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS  239 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence            4578999999988778888898 9999999999999853        22588775543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.57  E-value=0.0069  Score=47.58  Aligned_cols=32  Identities=25%  Similarity=0.707  Sum_probs=26.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhH
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECID  135 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~  135 (296)
                      .+..|++|-..+... ...+.| |||+||..|++
T Consensus        77 ~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence            456799999999874 455667 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.0057  Score=56.99  Aligned_cols=46  Identities=24%  Similarity=0.501  Sum_probs=39.7

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+.|-||...|..+....    |+|.||..|.-.-++....|++|-++..
T Consensus       241 Pf~c~icr~~f~~pVvt~----c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTK----CGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccchhhc----CCceeehhhhccccccCCcceecccccc
Confidence            456999999999986553    9999999999998888899999977664

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.013  Score=53.45  Aligned_cols=50  Identities=18%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ...|+||.+.+........|.+|||+|+.+|+...+.....||+|-.++.
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            47899999999998888888889999999999999999999999988875

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.0099  Score=56.73  Aligned_cols=47  Identities=26%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ++..|+||+..   +......| |+|.-|..||.+.|.+.+.|=.|+..+.
T Consensus       421 Ed~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence            67789999865   33344556 9999999999999999999999976653

>PHA03096 p28-like protein; Provisional

Probab=95.25  E-value=0.0079  Score=56.39  Aligned_cols=46  Identities=28%  Similarity=0.596  Sum_probs=33.9

Q ss_pred             ccccccccccccCc----eeEEecccCceechhhhHHHHhc---CCCCCCcCc
Q 047079          104 LECAICLAEFEDDN----ILRLLTVCYHVFHQECIDLWLES---HKTCPVCRS  149 (296)
Q Consensus       104 ~~C~ICl~~~~~~~----~~r~lp~C~H~Fh~~CI~~Wl~~---~~tCP~CR~  149 (296)
                      ..|.||++......    .-..|+.|.|.||..||..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999876532    34478889999999999999743   234555543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.17  E-value=0.014  Score=49.85  Aligned_cols=49  Identities=24%  Similarity=0.771  Sum_probs=34.6

Q ss_pred             CCccccccccccccCceeEEec-ccCc---eechhhhHHHHhc--CCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLT-VCYH---VFHQECIDLWLES--HKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp-~C~H---~Fh~~CI~~Wl~~--~~tCP~CR~~~~~~  154 (296)
                      .+..|-||.++-.+  ..  .| .|..   ..|.+|+..|+..  ..+|++|..+....
T Consensus         7 ~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          7 MDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            45689999988432  22  23 2444   5699999999974  45699998876543

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.86  E-value=0.012  Score=54.96  Aligned_cols=46  Identities=35%  Similarity=0.737  Sum_probs=36.9

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHH-hcCCCCCCc-CcCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL-ESHKTCPVC-RSDLD  152 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl-~~~~tCP~C-R~~~~  152 (296)
                      +.|+.|...+..+...   |-|+|.||.+||..-| ...+.||+| |+++.
T Consensus       275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            7899999988877554   4599999999999765 578889999 44543

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.80  E-value=0.018  Score=38.72  Aligned_cols=41  Identities=20%  Similarity=0.594  Sum_probs=24.0

Q ss_pred             ccccccccccCceeEEecccCceechhhhHHHHhcCC--CCCCc
Q 047079          106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK--TCPVC  147 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~--tCP~C  147 (296)
                      |.+|.+....++.-.- +.|+=.+|..|+..+++.+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~-~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSN-RDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCC-CccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6788888777754321 24888999999999998766  79988

; PDB: 3NW0_A 2CT0_A.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.59  E-value=0.042  Score=50.78  Aligned_cols=51  Identities=24%  Similarity=0.502  Sum_probs=41.7

Q ss_pred             cCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          101 KYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       101 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .....|+|...+|........+-+|||+|...+|.+- .....||+|-.++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence            3568999999999766666666669999999999996 33567999988886

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.028  Score=52.52  Aligned_cols=49  Identities=33%  Similarity=0.798  Sum_probs=38.7

Q ss_pred             ccccccccccccCc---eeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          104 LECAICLAEFEDDN---ILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       104 ~~C~ICl~~~~~~~---~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      .+|-||-++|+..+   ..+.|. |||.|+..|+..-+.. ...||.||.....
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~   56 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETTEI   56 (296)
T ss_pred             CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcccC
Confidence            57999999998764   345555 9999999999887764 4469999998643

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=0.023  Score=49.49  Aligned_cols=30  Identities=37%  Similarity=0.912  Sum_probs=24.4

Q ss_pred             ccCceechhhhHHHHhc----C-------CCCCCcCcCCCC
Q 047079          124 VCYHVFHQECIDLWLES----H-------KTCPVCRSDLDL  153 (296)
Q Consensus       124 ~C~H~Fh~~CI~~Wl~~----~-------~tCP~CR~~~~~  153 (296)
                      .||.-||.-|+..||+.    +       ..||.|-.++..
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            39999999999999963    1       259999888764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.028  Score=53.80  Aligned_cols=44  Identities=30%  Similarity=0.575  Sum_probs=31.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|.||+++..+   ...+| |||+-|  |..--.. ..+||+||..+.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~-l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKH-LPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeec-CCcEEE--chHHHhh-CCCCchhHHHHH
Confidence            34679999999766   45566 999966  7665433 334999998764

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.10  E-value=0.018  Score=52.37  Aligned_cols=45  Identities=24%  Similarity=0.687  Sum_probs=32.6

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      .|-.|..-=. ++...++- |.|+||..|...-...  .||+|++.+..
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~~--~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSPD--VCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCCcc--ccccccceeee
Confidence            5776755433 66777776 9999999997653222  89999998653

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=0.013  Score=54.55  Aligned_cols=42  Identities=29%  Similarity=0.614  Sum_probs=31.5

Q ss_pred             CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ..-|+||++.   +.....|+ |||. -|.+|-..    -+.||+||+.+.
T Consensus       300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcC---CcceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence            4679999987   55567787 9995 67888543    347999998653

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.73  E-value=0.042  Score=37.85  Aligned_cols=45  Identities=24%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             ccccccccccCc-eeEEecccCceechhhhHHHHh-cCCCCCCcCcCC
Q 047079          106 CAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDL  151 (296)
Q Consensus       106 C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~  151 (296)
                      |++|.+++...+ .+.-- .|++.++..|...-++ ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984433 33222 3799999999777765 467899999764

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.0058  Score=58.85  Aligned_cols=50  Identities=22%  Similarity=0.634  Sum_probs=42.2

Q ss_pred             CccccccccccccC-ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDD-NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~-~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ...|+||...+... +.+..+. |||.+|..||.+||.....||-|+..|..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            35799999998876 4555554 99999999999999998899999998864

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.12  E-value=0.043  Score=57.67  Aligned_cols=41  Identities=24%  Similarity=0.764  Sum_probs=32.9

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD  150 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~  150 (296)
                      ..|..|--.+.-+..--   .|+|.||..|+.   .+...||-|+..
T Consensus       841 skCs~C~~~LdlP~VhF---~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHF---LCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCccccceeee---ecccHHHHHhhc---cCcccCCccchh
Confidence            47999998888775433   299999999998   556779999763

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=0.042  Score=51.70  Aligned_cols=43  Identities=35%  Similarity=0.715  Sum_probs=30.0

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL  151 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~  151 (296)
                      -.|--|-  |-....=|++| |.|+||.+|...  ...+.||.|-..+
T Consensus        91 HfCd~Cd--~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCD--FPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccC--Ccceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            3566673  33344567888 999999999654  4466899996543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.71  E-value=0.15  Score=49.38  Aligned_cols=25  Identities=32%  Similarity=0.931  Sum_probs=19.4

Q ss_pred             eechhhhHHHHhc-------------CCCCCCcCcCCC
Q 047079          128 VFHQECIDLWLES-------------HKTCPVCRSDLD  152 (296)
Q Consensus       128 ~Fh~~CI~~Wl~~-------------~~tCP~CR~~~~  152 (296)
                      ..|.+|+.+|+.+             +.+||.||+.+-
T Consensus       314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            3578999999854             337999999864

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.12  E-value=0.1  Score=36.88  Aligned_cols=44  Identities=23%  Similarity=0.579  Sum_probs=29.9

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      .|-.|...   +..-.++| |+|+.+..|.+-  ++-+-||+|..++...
T Consensus         9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             eEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCC
Confidence            45555433   22334566 999999999665  4566799999888643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.47  E-value=0.23  Score=47.50  Aligned_cols=64  Identities=25%  Similarity=0.532  Sum_probs=43.5

Q ss_pred             HhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHH--HhcCCCCCCcCcCCC
Q 047079           83 IQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW--LESHKTCPVCRSDLD  152 (296)
Q Consensus        83 i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W--l~~~~tCP~CR~~~~  152 (296)
                      +..-|...-+..++.  ..+...|.||-..+.   ...++| |+|..|.-|...-  |...+.||+||....
T Consensus        43 lsaEPnlttsSaddt--DEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          43 LSAEPNLTTSSADDT--DEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccCCcccccccccc--ccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            333455544443332  234568999987753   345667 9999999997754  667889999998653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.64  E-value=0.12  Score=53.83  Aligned_cols=23  Identities=35%  Similarity=0.889  Sum_probs=21.3

Q ss_pred             ccCceechhhhHHHHhcCCCCCC
Q 047079          124 VCYHVFHQECIDLWLESHKTCPV  146 (296)
Q Consensus       124 ~C~H~Fh~~CI~~Wl~~~~tCP~  146 (296)
                      .|+|+.|..|...|++....||-
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            39999999999999999999984

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=90.56  E-value=0.12  Score=48.11  Aligned_cols=47  Identities=26%  Similarity=0.559  Sum_probs=38.3

Q ss_pred             CCccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCc
Q 047079          102 YGLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~  149 (296)
                      ....|+||.+.+.... .+..++ |||.-|..|.......+-+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            4456999999887665 344555 9999999999999887789999977

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=89.94  E-value=0.11  Score=54.37  Aligned_cols=44  Identities=30%  Similarity=0.665  Sum_probs=33.1

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhc--CCCCCCcCcCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--HKTCPVCRSDLD  152 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--~~tCP~CR~~~~  152 (296)
                      ..|.||++    .+.....+ |+|.||..|+..-+..  ..-||+||..+.
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            68999999    23333444 9999999999887753  235999998765

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.94  E-value=0.3  Score=43.78  Aligned_cols=39  Identities=31%  Similarity=0.740  Sum_probs=28.7

Q ss_pred             ccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          106 CAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       106 C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      |-.|.+.   ...+-++| |.|. +|..|=..    -.+||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            7777655   56677888 9985 88999443    456999987654

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=87.80  E-value=0.45  Score=39.23  Aligned_cols=10  Identities=0%  Similarity=0.521  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 047079           26 ILTVTLLVFF   35 (296)
Q Consensus        26 vl~vli~v~~   35 (296)
                      +++|+|++||
T Consensus         4 l~~iii~~i~   13 (130)
T PF12273_consen    4 LFAIIIVAIL   13 (130)
T ss_pred             eHHHHHHHHH
Confidence            3333333333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=87.71  E-value=0.15  Score=55.96  Aligned_cols=45  Identities=31%  Similarity=0.719  Sum_probs=37.5

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD  150 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~  150 (296)
                      ...|.||++.+.....+.   .|+|.+|..|+..|+..+..||.|...
T Consensus      1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence            458999999988443333   399999999999999999999999743

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=0.15  Score=52.20  Aligned_cols=45  Identities=29%  Similarity=0.603  Sum_probs=32.5

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD  150 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~  150 (296)
                      -+.|.||+..|......-.-+.|||+.|..|+..-  -+.+|| |..+
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D   55 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD   55 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence            35799999998765543333459999999998863  456788 6443

>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site

Probab=86.78  E-value=0.37  Score=33.37  Aligned_cols=18  Identities=39%  Similarity=0.606  Sum_probs=15.1

Q ss_pred             ccccccccccHHHHHHHh
Q 047079          238 LEDRHTLRLPENVKLKIL  255 (296)
Q Consensus       238 ~~er~tlrLpe~v~~~~~  255 (296)
                      ..++|+||||++++++|.
T Consensus         3 ~~~~f~lRlP~~l~~~lk   20 (50)
T PF03869_consen    3 KDPQFNLRLPEELKEKLK   20 (50)
T ss_dssp             CSEEEEEECEHHHHHHHH
T ss_pred             CCCceeeECCHHHHHHHH
Confidence            367999999999987664

Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=86.09  E-value=0.76  Score=39.44  Aligned_cols=37  Identities=22%  Similarity=0.533  Sum_probs=23.4

Q ss_pred             CccccccccccccCceeEEec---c-----cCc-eechhhhHHHHh
Q 047079          103 GLECAICLAEFEDDNILRLLT---V-----CYH-VFHQECIDLWLE  139 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp---~-----C~H-~Fh~~CI~~Wl~  139 (296)
                      +..|+|||+-=.....+...-   +     |+- .=|..|++++-+
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            467999999866554433110   1     443 347899999853

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=85.66  E-value=0.72  Score=32.55  Aligned_cols=40  Identities=23%  Similarity=0.617  Sum_probs=31.3

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPV  146 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~  146 (296)
                      ...|.+|-+.|.+++.+.+-|.|+-.+|++|-+.    ...|-+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~   44 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN   44 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence            4579999999997777777888999999999433    445544

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.57  E-value=0.61  Score=43.65  Aligned_cols=48  Identities=21%  Similarity=0.589  Sum_probs=34.5

Q ss_pred             cccccccc-cccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079          105 ECAICLAE-FEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD  152 (296)
Q Consensus       105 ~C~ICl~~-~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~  152 (296)
                      .|++|-.. |..++..-+...|+|..|..|++.-+... .-||.|-..+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            48888754 44555444444599999999999988754 46999966553

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=85.19  E-value=0.4  Score=44.64  Aligned_cols=50  Identities=32%  Similarity=0.693  Sum_probs=35.5

Q ss_pred             CccccccccccccCce-eEEecccC-----ceechhhhHHHHh--cCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNI-LRLLTVCY-----HVFHQECIDLWLE--SHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~-~r~lp~C~-----H~Fh~~CI~~Wl~--~~~tCP~CR~~~~~  153 (296)
                      +..|-||..+...... .-..| |.     +..|..|++.|+.  ...+|.+|......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            4689999997765432 22233 63     6679999999997  55679999876543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.72  E-value=0.45  Score=32.65  Aligned_cols=42  Identities=29%  Similarity=0.871  Sum_probs=25.6

Q ss_pred             cccccccccccCceeEEeccc-CceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          105 ECAICLAEFEDDNILRLLTVC-YHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C-~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .|--|.  |.....++    | .|..|..|+..-|.....||+|..++.
T Consensus         4 nCKsCW--f~~k~Li~----C~dHYLCl~CLt~ml~~s~~C~iC~~~LP   46 (50)
T PF03854_consen    4 NCKSCW--FANKGLIK----CSDHYLCLNCLTLMLSRSDRCPICGKPLP   46 (50)
T ss_dssp             ---SS---S--SSEEE-----SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred             cChhhh--hcCCCeee----ecchhHHHHHHHHHhccccCCCcccCcCc
Confidence            355553  44444444    6 599999999999999999999998874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=84.61  E-value=0.69  Score=43.79  Aligned_cols=43  Identities=23%  Similarity=0.636  Sum_probs=34.0

Q ss_pred             CCccccccccccccCceeEEeccc--CceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVC--YHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C--~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .-++|+||.+.+..+..-     |  ||.-|..|=.   +..+.||.||.++.
T Consensus        47 ~lleCPvC~~~l~~Pi~Q-----C~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIFQ-----CDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             hhccCchhhccCccccee-----cCCCcEehhhhhh---hhcccCCccccccc
Confidence            347899999999888432     5  7999998854   45778999999886

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=84.34  E-value=0.6  Score=44.66  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      +++-|+.|++.+...+.-..--.||...|.-|-..--+ -+..||-||...+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            34559999999987664433334999888888443322 35679999987764

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.89  E-value=0.41  Score=46.85  Aligned_cols=38  Identities=26%  Similarity=0.632  Sum_probs=28.2

Q ss_pred             CCccccccccccccC-ceeEEecccCceechhhhHHHHhc
Q 047079          102 YGLECAICLAEFEDD-NILRLLTVCYHVFHQECIDLWLES  140 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~Fh~~CI~~Wl~~  140 (296)
                      ...+|.||..++... +... ...|+|.||.+|+.+.++.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence            356899999555444 4444 4459999999999998863

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.18  E-value=0.4  Score=44.14  Aligned_cols=50  Identities=28%  Similarity=0.717  Sum_probs=35.0

Q ss_pred             CCccccccccccccCcee-EEeccc-----CceechhhhHHHHhc--------CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNIL-RLLTVC-----YHVFHQECIDLWLES--------HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~-r~lp~C-----~H~Fh~~CI~~Wl~~--------~~tCP~CR~~~~  152 (296)
                      .+..|=||+..=++.-.- .+.| |     .|..|..|+..|+..        ..+||.|+....
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi   82 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI   82 (293)
T ss_pred             cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence            456799998875554322 2334 6     588999999999943        225999987643

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.08  E-value=0.52  Score=50.06  Aligned_cols=35  Identities=20%  Similarity=0.441  Sum_probs=26.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHH
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL  138 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl  138 (296)
                      .+..|.+|...+...- ..+-| |||.||.+||..-.
T Consensus       816 p~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence            4578999988776542 23345 99999999998764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.25  E-value=0.79  Score=48.25  Aligned_cols=51  Identities=12%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             CCccccccccccccCce---eEEecccCceechhhhHHHHhc------CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNI---LRLLTVCYHVFHQECIDLWLES------HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~---~r~lp~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~~~  152 (296)
                      ....|.||.-++..++.   +-.+..|+|.||..||..|+..      +-.|++|...|.
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            45678888888887442   2222359999999999999843      445899977664

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=80.66  E-value=1  Score=47.57  Aligned_cols=56  Identities=29%  Similarity=0.591  Sum_probs=39.1

Q ss_pred             CccccccccccccCceeEEec-ccC---ceechhhhHHHHhc--CCCCCCcCcCCCCCCCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLT-VCY---HVFHQECIDLWLES--HKTCPVCRSDLDLPQNSLE  159 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp-~C~---H~Fh~~CI~~Wl~~--~~tCP~CR~~~~~~~~~~~  159 (296)
                      ...|.||..+=..++.+- .| +|.   ...|.+|+.+|+.-  ...|-+|+.++....-..+
T Consensus        12 ~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e   73 (1175)
T COG5183          12 KRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKE   73 (1175)
T ss_pred             chhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeeccc
Confidence            367999998866666553 33 233   35899999999974  4459999988765544333

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=80.58  E-value=0.56  Score=48.04  Aligned_cols=42  Identities=38%  Similarity=0.866  Sum_probs=28.2

Q ss_pred             CCccccccc-----cccccCceeEEecccCceechhhhHHHHhcCCCCCCc
Q 047079          102 YGLECAICL-----AEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVC  147 (296)
Q Consensus       102 ~~~~C~ICl-----~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~C  147 (296)
                      .+..|.+|-     ..|+.....++.. |+++||.+|...   ....||-|
T Consensus       510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC  556 (580)
T KOG1829|consen  510 KGFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRC  556 (580)
T ss_pred             CeeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCch
Confidence            457788883     2344444556665 999999999443   34449999

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.43  E-value=1.4  Score=42.97  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=36.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC---CCCCCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH---KTCPVC  147 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~---~tCP~C  147 (296)
                      ..+.|+|=.+.=.+......|. |||+...+-|.+-.++.   ..||.|
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence            3468999888877777777777 99999999999987654   469999

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=80.18  E-value=0.84  Score=41.75  Aligned_cols=48  Identities=21%  Similarity=0.592  Sum_probs=35.6

Q ss_pred             CCccccccccccc-cCc-eeEEecccCceechhhhHHHHhcCC-CCC--CcCc
Q 047079          102 YGLECAICLAEFE-DDN-ILRLLTVCYHVFHQECIDLWLESHK-TCP--VCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~-~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP--~CR~  149 (296)
                      .+..|+||-.+.. .++ .+-+-|.|-|..|..|++.-|.... .||  -|-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            3457999987643 344 4445566999999999999997655 599  7844

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		6e-13
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		6e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		4e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		3e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		5e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		5e-05
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		8e-05

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCR 148
           G+ECA+CLAE ED    R L  C H FH EC+D+WL SH TCP+CR
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150
           C +C+ +FE   +LR+L  C H FH +C+D WL++++TCP+CR+D
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRAD 69

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD--LPQNS 157
           +C ICL+  E+   +R L  C H+FHQ C+D WL ++K CP+CR D++  LP  S
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSP 162
           GLEC +C  ++     +R L  C H+FH  CI  WLE H +CPVCR  L   QN+    P
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL-TGQNTATNPP 72
Query: 163 LL 164
            L
Sbjct: 73  GL 74

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 74  ANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQEC 133
           ANP      I A P    +  +D       + C IC +E+   ++   L  C+H FH+ C
Sbjct: 13  ANPPASKESIDALPEILVT--EDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPC 69
Query: 134 IDLWLESHKTCPVCR 148
           + +WL+   TCPVCR
Sbjct: 70  VSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVC 147
           CA+CL +F+  + L +   C H FH++C+  WLE  K CP+C
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCR 148
           EC IC+     D    L+  C H F Q+CID W + H+ CP+CR
Sbjct: 17  ECCICM-----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-27
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-27
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	6e-26
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	5e-24
2ect_A	78	Ring finger protein 126; metal binding protein, st	7e-22
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	8e-21
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	7e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	7e-18
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	5e-17
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-15
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	6e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-11
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	1e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-10
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-09
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	8e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	9e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	4e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  100 bits (252), Expect = 2e-27
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 81  SLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES 140
                 P++ ++       Q     C +C+ +FE   +LR+L  C H FH +C+D WL++
Sbjct: 4   GSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKA 59

Query: 141 HKTCPVCRSDLD 152
           ++TCP+CR+D  
Sbjct: 60  NRTCPICRADSG 71

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 99.6 bits (249), Expect = 3e-27
 Identities = 28/49 (57%), Positives = 34/49 (69%)

Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
           G+ECA+CLAE ED    R L  C H FH EC+D+WL SH TCP+CR  +
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 97.4 bits (243), Expect = 6e-26
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 70  SDSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVF 129
           S   ANP      I A P    +  +D       + C IC +E+   ++   L  C+H F
Sbjct: 9   SHMVANPPASKESIDALPEILVT--EDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYF 65

Query: 130 HQECIDLWLESHKTCPVCRSDLDLP 154
           H+ C+ +WL+   TCPVCR     P
Sbjct: 66  HKPCVSIWLQKSGTCPVCRCMFPPP 90

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 91.7 bits (228), Expect = 5e-24
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNS 157
             +C ICL+  E+   +R L  C H+FHQ C+D WL ++K CP+CR D++    S
Sbjct: 14  EEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 86.3 bits (214), Expect = 7e-22
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSP 162
           GLEC +C  ++     +R L  C H+FH  CI  WLE H +CPVCR  L   QN+    P
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT-GQNTATNPP 72

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 83.3 bits (206), Expect = 8e-21
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
            CA+CL +F+  + L +   C H FH++C+  WLE  K CP+C   +
Sbjct: 17  LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 78.4 bits (193), Expect = 7e-19
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 99  RQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153
           R +    C  C AE + ++ + +   C H FH  C+ LW++ +  CP+C+ D  +
Sbjct: 22  RVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 75.5 bits (186), Expect = 7e-18
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 90  AYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRS 149
           +  +    ++     EC IC+    D     +L  C H F Q+CID W + H+ CP+CR 
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRL 56

Query: 150 DLDLPQNS 157
            +     S
Sbjct: 57  QMTGANES 64

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 72.3 bits (178), Expect = 5e-17
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCR 148
            C ICL +     ++  +  C H+ H+ C +  L+    CP+C 
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
            C ICL +  + ++      C H F   CI  W+  + TCP+C+  ++
Sbjct: 7   RCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 104 LECAICLAEFEDDNILR---LLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155
           + C IC+  + +        + T C HVF  +C+   L++  TCP CR  ++  +
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 104 LECAICLAEFED---DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
           + C IC+  + +   +  L + T C HVF  +C+   L++  TCP CR  ++
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 104 LECAICLAEFED---DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155
           + C IC+  + +   +  L + T C HVF  +C+   L++  TCP CR  ++  +
Sbjct: 11  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 99  RQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150
                +EC    A    +       VC H FH  CI  WL++ + CP+   +
Sbjct: 47  IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDLPQ 155
             C IC+ +  D    RL   C  +    CI  WL   +  CP CR+ L L +
Sbjct: 23  FRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 99  RQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150
                +EC    A    +       VC H FH  CI  WL++ + CP+   +
Sbjct: 58  IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 56.0 bits (135), Expect = 8e-11
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSP 162
            ECAICL          +   C HVF   C+       K C +CR   ++P++ L+  P
Sbjct: 16  PECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQ--EIPEDFLDSGP 68

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD--LPQNSLEKS 161
           L C +C   F D      +  C H F + CI  +LE+ K CP+C   +    P  ++   
Sbjct: 16  LMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSD 72

Query: 162 PLL 164
             L
Sbjct: 73  KTL 75

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
           + C+IC     D      +T C H F + CI         CP C   +
Sbjct: 16  ILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
             C IC   F++     ++T C H F + C      +   C +C     
Sbjct: 16  FRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPL 163
           L+C IC   F +     +   C H F   CI+ W++    CP+CR D+        K+  
Sbjct: 65  LQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK------SKTYS 114

Query: 164 LFRSNSMNNITGSNVSTLEDAISIFIKEDEEAR 196
           L   N +N +  +  S +++   + I+E +  R
Sbjct: 115 LVLDNCINKMVNNLSSEVKERRIVLIRERKAKR 147

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155
           L C IC   F       ++  C H +   CI  +L     CP C   +  P 
Sbjct: 23  LRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 104 LECAICLAEFEDDNILR---LLTVCYHVFHQECIDLWLESHKTCPVCR 148
           + C IC+  + +        + T C HVF  +C+   L++  TCP CR
Sbjct: 8   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 104 LECAICLAEFED---DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
           + C IC+  + +   +  L + T C HVF  +C+   L++  TCP CR  ++
Sbjct: 73  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 5/50 (10%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLD 152
            C IC +             C    H  C+  + +S+    CP C     
Sbjct: 17  ICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK---TCPVCRSDLDLP 154
           LEC IC+  F ++ +   L  C H   ++C++  L S      CP C     + 
Sbjct: 16  LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 19/64 (29%)

Query: 105 ECAICLAEFED--------------DNILRLLTVCYHVFHQECIDLWLES-----HKTCP 145
           +C IC+ +                   ++  LT C H FH  C+     +        CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 146 VCRS 149
            C++
Sbjct: 87  SCKT 90

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 105 ECAICLAEFEDDNILRLLT----VCYHVFHQECIDLWLES-----------HKTCPVCRS 149
            C IC A   D   + L++     C    H  C++ W ++              CP C++
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369

Query: 150 DLDLPQNSL 158
            L     +L
Sbjct: 370 KLSTSFAAL 378

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD 152
             C IC    +D  I      C H+    C+  W ES  + CP CR ++ 
Sbjct: 333 QLCKICAENDKDVKIEP----CGHLMCTSCLTSWQESEGQGCPFCRCEIK 378

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQN 156
           L C  C AE +   +L     C H     C++    S   CP+C++   L  +
Sbjct: 7   LRCQQCQAEAKCPKLLP----CLHTLCSGCLE---ASGMQCPICQAPWPLGAD 52

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD 152
            +C  C             T C H F + C+   L S    C  C+  + 
Sbjct: 16  YKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDLPQNSLEKSP 162
           + C IC     D     + T C H+F + CI   L+     CP CR         LE   
Sbjct: 24  ISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF--PTDLESPV 77

Query: 163 LLFRS 167
             F +
Sbjct: 78  KSFLN 82

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK--TCPVCRSDLDLP 154
           L C IC     D     ++  C + +  ECI   L      TCP C  +   P
Sbjct: 16  LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDLPQNSLEKSP 162
           L C ICL   ++         C H F  +CI   L S  K CP CR  L + + SL   P
Sbjct: 55  LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKL-VSKRSLRPDP 110

Query: 163 LL 164
             
Sbjct: 111 NF 112

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDLPQNSLEKSP 162
            +C  C           + TVC H   ++C+D    +   +CP CR DL     +++ + 
Sbjct: 53  FQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG-RSYAMQVNQ 107

Query: 163 LL 164
            L
Sbjct: 108 PL 109

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDLPQNSLEKSP 162
             C  C           + T C+H   ++C+    ++   +CP CR DL      +  + 
Sbjct: 79  FMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG-QNYIMIPNE 133

Query: 163 LL 164
           +L
Sbjct: 134 IL 135

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKT-CPVCRSDLD 152
            +EC +C+   E D+I      C +   + C           CP CR    
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRS 149
           L C+ C     +   L     C H+F   C+   + +   CPVC +
Sbjct: 23  LRCSRCTNILREPVCL---GGCEHIFCSNCVSDCIGT--GCPVCYT 63

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 106 CAICLAEFEDDNILRLLTVC-----YHVFHQECIDLWLES--HKTCPVCR 148
           C IC  E +D++   L+T C      H  HQ C+  W++S   + C +C+
Sbjct: 18  CRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 104 LECAICLAEFEDDNILRLL-TVCYHVFHQECID-LWLESHKTCPVCRSDL 151
             C  C      +  L+L+  VC H   + C+D L++     CP C + L
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDLPQNSLEKSP 162
            +C IC+    +   L     C H   + C    +E +   CP CR  +        +  
Sbjct: 16  CQCGICMEILVEPVTLP----CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRN 71

Query: 163 LL 164
            L
Sbjct: 72  SL 73

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 104 LECAICLAEFEDDNILR--LLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD 152
            EC ICL        LR  + T C H F + CI   +      CPV    L 
Sbjct: 19  YECPICL------MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECI-DLWLESHK-TCPVCRS 149
           L C IC     D     ++  C + +  ECI    LES + TCP C  
Sbjct: 14  LLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 38/282 (13%), Positives = 68/282 (24%), Gaps = 107/282 (37%)

Query: 31  LLVFFFVGFF--SVYFCRCFMENIVNTWQLRQSPSGNAAGTSDSPANPGLHPSLIQAFPA 88
           +        F  ++  C      +    +L      N    SD  +N  L    IQA   
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-- 233

Query: 89  FAYSTVKDFRRQKYGLECAICLAEFEDDNILR--------LLT-------------VCYH 127
                ++   + K    C + L   ++             LLT                H
Sbjct: 234 -----LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 128 VF---------HQECIDL---WLESHKTCPVCRSDLDLPQNSLEKSPLLF---------R 166
           +            E   L   +L+       CR   DLP+  L  +P             
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLD-------CRPQ-DLPREVLTTNPRRLSIIAESIRDG 340

Query: 167 SNSMNNITGSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNIIKQNERYEKIEKFSRSHS 226
             + +N    N   L   I   +             V+ P   ++   ++++  F     
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN------------VLEPAEYRK--MFDRLSVF----- 381

Query: 227 TGHSMHTTKNELEDRHTLRLPENVK-----LKILRGHNWTGS 263
                               P +       L ++    W   
Sbjct: 382 --------------------PPSAHIPTILLSLI----WFDV 399

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 82/255 (32%)

Query: 24  TIILTVTLLVFFFVGFFSVYFCRCFMENIVNTWQLRQSPS--GNAAGTS--DSPA----- 74
            ++ T    V  F+   +       +++   T    +  S           D P      
Sbjct: 268 ILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 75  NPGLHPSLIQA----FPA----FAYSTVKDFRR--------------QKYGLECAICLAE 112
           NP    S+I        A    + +                      +K     ++    
Sbjct: 326 NP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---- 380

Query: 113 FEDD-NI-LRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQNSLEKSPLLFRSNSM 170
           F    +I   LL++           +W +  K+       + +  N L K  L+ +    
Sbjct: 381 FPPSAHIPTILLSL-----------IWFDVIKSDV----MVVV--NKLHKYSLVEKQPKE 423

Query: 171 NNIT-----------GSNVSTLEDAISIFIKEDEEARGDNGEQVVNPNI----------- 208
           + I+             N   L  +I   +      +  + + ++ P +           
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 209 IKQNERYEKIEKFSR 223
           +K  E  E++  F  
Sbjct: 481 LKNIEHPERMTLFRM 495

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155
           CAI         +         +F +  ++ +++     P+    L + +
Sbjct: 6   CAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 13/71 (18%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDLPQNSLEKSP 162
            EC ICL    +     + T C H F + CI   +      CPV    L   Q       
Sbjct: 19  YECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ------- 67

Query: 163 LLFRSNSMNNI 173
            LF  N     
Sbjct: 68  -LFPDNFAKRE 77

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--------KTCPV--CRSDLDLP 154
            C +CL E+  + +  +   C  +F   C+  ++E           +CP   C     L 
Sbjct: 7   GCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65

Query: 155 QNSLEK 160
           +N +E 
Sbjct: 66  ENEIEC 71

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 104 LECAICLAEFEDDNILR--LLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDLPQN-SLE 159
             C+ C       N+LR      C H +   C+   L S  + C  C  +    +  S+ 
Sbjct: 32  YLCSACR------NVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISIL 85

Query: 160 KSPLLFRSNSMNNI 173
           +S   F  N+    
Sbjct: 86  ESSSAFPDNAARRE 99

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 5/55 (9%)

Query: 100 QKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLD 152
                 C IC +             C    H  C+  + +S+    CP C     
Sbjct: 177 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 14/62 (22%)

Query: 92  STVKDFRRQKYGLECAICLAEFEDDNILR--LLTVCYHVFHQECIDLWLESHK---TCPV 146
           + +   ++    LEC ICL       +++  + T C H+F + C+   L   K    CP+
Sbjct: 13  NVINAMQKI---LECPICL------ELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63

Query: 147 CR 148
           C+
Sbjct: 64  CK 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.71
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.63
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.55
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.53
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.53
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.52
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.43
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.43
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.41
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.4
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.39
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.37
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.33
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.32
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.32
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.31
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.28
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.28
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.25
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.24
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.22
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.19
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.18
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.15
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.15
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.12
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.12
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.12
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.12
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.07
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.03
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.02
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.97
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.97
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.97
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.94
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.93
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.92
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.88
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.87
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.86
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.86
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.85
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.84
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.84
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.82
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.8
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.77
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.64
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.62
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.6
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.59
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.58
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.44
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.37
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.37
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.37
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.35
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.34
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.08
3nw0_A	238	Non-structural maintenance of chromosomes element	98.02
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.98
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.83
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.15
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.41
1we9_A	64	PHD finger family protein; structural genomics, PH	90.2
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	90.19
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	87.66
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	87.44
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	86.9
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	86.65
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	86.54
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	86.26
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	86.15
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	83.92
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	83.81
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	83.59
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	83.02
1wew_A	78	DNA-binding family protein; structural genomics, P	82.46
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	82.34
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	81.7
1wem_A	76	Death associated transcription factor 1; structura	81.57
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	80.59
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	80.21

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=128.18  Aligned_cols=80  Identities=30%  Similarity=0.650  Sum_probs=68.7

Q ss_pred             CCCCCCCCCHHHHhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079           71 DSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD  150 (296)
Q Consensus        71 ~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~  150 (296)
                      ......|++++.|++||.+.+.....  ....+..|+||++.|..++.++.++ |+|.||..||+.|+..+.+||+||+.
T Consensus        10 ~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~   86 (91)
T 2l0b_A           10 HMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM   86 (91)
T ss_dssp             CSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred             CCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence            44567799999999999998875432  2335678999999999999899998 99999999999999999999999998


Q ss_pred             CCC
Q 047079          151 LDL  153 (296)
Q Consensus       151 ~~~  153 (296)
                      +..
T Consensus        87 ~~~   89 (91)
T 2l0b_A           87 FPP   89 (91)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=8.5e-17  Score=119.24  Aligned_cols=70  Identities=33%  Similarity=0.878  Sum_probs=58.7

Q ss_pred             HHHhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079           81 SLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus        81 ~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      +.+++||.+.|...+   .......|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+.+.
T Consensus         4 ~~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            345678888886533   2235678999999999999999998 999999999999999999999999998653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.55  E-value=2.5e-15  Score=104.43  Aligned_cols=51  Identities=55%  Similarity=1.140  Sum_probs=46.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            457899999999998888888779999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=8e-15  Score=108.04  Aligned_cols=51  Identities=35%  Similarity=0.851  Sum_probs=47.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|..+..+..++ |+|+||..||..|++.+.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            4678999999999999888888 99999999999999999999999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.53  E-value=8.3e-15  Score=106.50  Aligned_cols=52  Identities=42%  Similarity=1.011  Sum_probs=47.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            5678999999999888888888 999999999999999999999999998643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=1.3e-14  Score=108.01  Aligned_cols=52  Identities=44%  Similarity=1.022  Sum_probs=47.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ...+|+||++.|..++.+..++ |+|+||..||..|++.+.+||+||+.+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            4678999999999998888888 999999999999999999999999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.2e-15  Score=110.31  Aligned_cols=51  Identities=31%  Similarity=0.806  Sum_probs=42.7

Q ss_pred             CCcccccccccccc-----------CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFED-----------DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+..|+||++.|.+           ++.++.++.|+|.||..||++||+.+.+||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            34678888888864           4456667679999999999999999999999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.43  E-value=1.1e-13  Score=95.82  Aligned_cols=50  Identities=26%  Similarity=0.697  Sum_probs=42.8

Q ss_pred             CCccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.+++ .+..++ |+|+||..||..|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4568999999997644 456666 9999999999999999999999998874

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.43  E-value=4.1e-14  Score=112.44  Aligned_cols=50  Identities=30%  Similarity=0.664  Sum_probs=42.9

Q ss_pred             CCccccccccccccCc---------------eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDN---------------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+..|+||++.|....               .+..++ |+|.||..||+.||..+.+||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            5678999999998651               355566 9999999999999999999999999864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.41  E-value=1.4e-13  Score=109.59  Aligned_cols=51  Identities=25%  Similarity=0.622  Sum_probs=41.5

Q ss_pred             CccccccccccccCc---------------eeEEecccCceechhhhHHHH-----hcCCCCCCcCcCCCCC
Q 047079          103 GLECAICLAEFEDDN---------------ILRLLTVCYHVFHQECIDLWL-----ESHKTCPVCRSDLDLP  154 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~---------------~~r~lp~C~H~Fh~~CI~~Wl-----~~~~tCP~CR~~~~~~  154 (296)
                      +..|+||++.|..+.               .+++++ |+|+||..||..||     ..+.+||+||+.+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            468999999997654               334565 99999999999999     4577899999988643

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.40  E-value=1.2e-13  Score=100.61  Aligned_cols=51  Identities=27%  Similarity=0.714  Sum_probs=43.9

Q ss_pred             CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++    ..+..++ |||.||..||..|++.+.+||+||..+..
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            467899999999875    4445666 99999999999999999999999999864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-13  Score=99.42  Aligned_cols=50  Identities=28%  Similarity=0.741  Sum_probs=42.9

Q ss_pred             CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++    ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            457899999999875    2345666 9999999999999999999999999875

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.37  E-value=2.3e-13  Score=96.81  Aligned_cols=50  Identities=28%  Similarity=0.739  Sum_probs=43.1

Q ss_pred             CccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ..+|+||++.|.++    ..+..++ |||.||..||..|++.+.+||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            46899999999865    3445666 99999999999999999999999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.3e-13  Score=96.61  Aligned_cols=50  Identities=24%  Similarity=0.531  Sum_probs=42.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ....|+||++.|.++.  .+++ |+|.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p~--~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           14 PYILCSICKGYLIDAT--TITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             GGGSCTTTSSCCSSCE--ECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCChHHHCcC--EECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            4578999999998753  3335 999999999999999999999999998643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=99.09  Aligned_cols=51  Identities=29%  Similarity=0.760  Sum_probs=43.1

Q ss_pred             CCccccccccccccCceeEEecccC-----ceechhhhHHHHhcC--CCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCY-----HVFHQECIDLWLESH--KTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~-----H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~~  154 (296)
                      .+..|.||+++|.+++.+ ++| |.     |.||..||++||..+  .+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            456899999999877766 577 96     999999999999865  4899999998653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.32  E-value=1.1e-12  Score=94.71  Aligned_cols=48  Identities=31%  Similarity=0.816  Sum_probs=41.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+..|+||++.+.++  ...++ |+|.||..||..|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            356899999998764  35666 9999999999999999999999999885

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=97.54  Aligned_cols=48  Identities=40%  Similarity=0.932  Sum_probs=42.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~  154 (296)
                      ....|+||++.+.+    ..++ |+|.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            45789999999877    4566 999999999999999999999999998643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.31  E-value=9.7e-14  Score=112.14  Aligned_cols=51  Identities=31%  Similarity=0.654  Sum_probs=1.1

Q ss_pred             CCccccccccccccCc--------------eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDN--------------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~--------------~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+..|+||++.|.+..              ...++++|+|.||..||++||+.+.+||+||+++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            5578999999997632              12232349999999999999999999999999865

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=95.56  Aligned_cols=47  Identities=34%  Similarity=0.576  Sum_probs=41.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++   ..++ |+|+||..||..|+..+.+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            457899999998765   3456 9999999999999999999999999885

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.7e-12  Score=97.00  Aligned_cols=52  Identities=31%  Similarity=0.760  Sum_probs=44.0

Q ss_pred             CCccccccccccccCce-eEEecccCceechhhhHHHHhcC---CCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNI-LRLLTVCYHVFHQECIDLWLESH---KTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~-~r~lp~C~H~Fh~~CI~~Wl~~~---~tCP~CR~~~~~~  154 (296)
                      ....|+||++.|.+.+. ...++ |||.||..||..|+..+   .+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            45789999999988664 55666 99999999999999876   7899999988643

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=93.17  Aligned_cols=49  Identities=29%  Similarity=0.567  Sum_probs=40.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++.|+|.||..||..|+..+  .+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           14 DELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             GGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            45789999999987633   44599999999999999865  689999997653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=7.4e-12  Score=93.11  Aligned_cols=50  Identities=20%  Similarity=0.414  Sum_probs=42.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~~  154 (296)
                      ...+|+||++.|..++..  . .|+|.||..||.+||+++  .+||+||.++...
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            446899999999876543  3 599999999999999987  8899999988643

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6e-12  Score=92.00  Aligned_cols=49  Identities=27%  Similarity=0.594  Sum_probs=40.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR~~~~~~  154 (296)
                      ....|+||++.|.++.   .++ |||.||..||..|+.   ...+||+||..+...
T Consensus        19 ~~~~C~IC~~~~~~~~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCBCTTTCSBCSSEE---ECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             cCCEeccCCcccCCeE---EcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4578999999998643   345 999999999999997   456899999998643

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.19  E-value=6.8e-12  Score=103.49  Aligned_cols=46  Identities=37%  Similarity=0.938  Sum_probs=40.7

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      +..|+||++.|.++   ..+| |||.||..||..|+..+.+||+||.++.
T Consensus        53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            46799999999765   3466 9999999999999999999999999885

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.18  E-value=1e-11  Score=100.22  Aligned_cols=51  Identities=27%  Similarity=0.714  Sum_probs=44.0

Q ss_pred             CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      +...|+||++.|.++    ..+..++ |||+||..||..|++.+.+||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            457899999999875    3445666 99999999999999999999999998864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=88.81  Aligned_cols=48  Identities=21%  Similarity=0.482  Sum_probs=40.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.+.++..   ++ |||+||..||..|+. ...+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            45789999999987754   45 999999999999994 56789999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=92.79  Aligned_cols=47  Identities=21%  Similarity=0.566  Sum_probs=41.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++.   +++ |+|+||..||..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4578999999997753   356 9999999999999999999999999885

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=2.1e-11  Score=87.46  Aligned_cols=51  Identities=24%  Similarity=0.657  Sum_probs=40.9

Q ss_pred             Ccccccccc-ccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          103 GLECAICLA-EFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~-~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      +..|+||++ .|.++....++.+|||+||..||..|+.. ..+||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            468999999 78877654333349999999999999764 4679999999864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.15  E-value=1.2e-11  Score=96.61  Aligned_cols=48  Identities=29%  Similarity=0.706  Sum_probs=40.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++  +.+++ |||.||..||..|+... .+||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence            457899999999865  33255 99999999999999987 68999999985

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.15  E-value=2.6e-11  Score=90.59  Aligned_cols=48  Identities=35%  Similarity=0.755  Sum_probs=41.4

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc------CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES------HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++.   .++ |+|.||..||..|+..      ...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4578999999998764   456 9999999999999987      6789999998864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.12  E-value=2.3e-11  Score=94.41  Aligned_cols=49  Identities=29%  Similarity=0.618  Sum_probs=41.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..  +++ |||.||..||..|+..+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMI--IPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEE--CTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCE--ECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            34689999999987532  234 99999999999999999999999998863

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.12  E-value=2.7e-11  Score=95.57  Aligned_cols=49  Identities=33%  Similarity=0.756  Sum_probs=41.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++  +.+++ |||.||..||..|+....+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            457899999999865  33335 99999999999999999999999998864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.12  E-value=3.2e-11  Score=89.38  Aligned_cols=48  Identities=29%  Similarity=0.573  Sum_probs=41.4

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++ |||.||..||..|+.. +.+||+||..+..
T Consensus         7 ~~~~C~IC~~~~~~Pv~---~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVI---VS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEE---ET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccCCEE---cC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            46789999999987643   45 9999999999999987 7889999998864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.12  E-value=3.3e-11  Score=102.01  Aligned_cols=75  Identities=31%  Similarity=0.507  Sum_probs=51.8

Q ss_pred             CCCCCHHHHhhCCcccccchhhh----hcccCCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCc
Q 047079           75 NPGLHPSLIQAFPAFAYSTVKDF----RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRS  149 (296)
Q Consensus        75 ~~gl~~~~i~~lp~~~~~~~~~~----~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~  149 (296)
                      ..++....+...+.....+..+.    ........|+||++.|.++  +.+++ |||.||..||..|+.. +.+||+||.
T Consensus        22 ~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~   98 (165)
T 2ckl_B           22 TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRK   98 (165)
T ss_dssp             CCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred             cccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCC
Confidence            34666666666554433322111    1112346899999999874  33345 9999999999999997 778999999


Q ss_pred             CCC
Q 047079          150 DLD  152 (296)
Q Consensus       150 ~~~  152 (296)
                      .+.
T Consensus        99 ~~~  101 (165)
T 2ckl_B           99 KLV  101 (165)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            885

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.6e-11  Score=85.03  Aligned_cols=42  Identities=31%  Similarity=0.668  Sum_probs=35.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVC  147 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~C  147 (296)
                      ....|+||++.|.++.   .++ |||+||..||..|++   ...+||+|
T Consensus        19 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCE---ECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeE---EeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4678999999998763   345 999999999999998   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.09  E-value=4.3e-11  Score=96.51  Aligned_cols=51  Identities=27%  Similarity=0.714  Sum_probs=43.1

Q ss_pred             CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.+.    .....++ |||+||..||++|++.+.+||+||..+..
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            567899999999864    2334555 99999999999999999999999998863

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-11  Score=87.97  Aligned_cols=48  Identities=31%  Similarity=0.666  Sum_probs=41.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc------CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES------HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++ |+|.||..||..|+..      ...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            45789999999987643   45 9999999999999987      7889999999874

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.05  E-value=2.4e-11  Score=90.01  Aligned_cols=48  Identities=27%  Similarity=0.648  Sum_probs=41.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc-------CCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-------HKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-------~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++ |||.||..||..|+..       ..+||+||..+..
T Consensus        11 ~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            46789999999987643   45 9999999999999986       6689999999864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.03  E-value=9.6e-11  Score=94.62  Aligned_cols=48  Identities=25%  Similarity=0.569  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++ |||.||..||..|+..+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPIT---TV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEE---ee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            34689999999987633   45 999999999999998554 89999999864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.2e-10  Score=81.01  Aligned_cols=42  Identities=36%  Similarity=0.914  Sum_probs=35.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHH---hcCCCCCCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL---ESHKTCPVC  147 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---~~~~tCP~C  147 (296)
                      ....|+||++.|.++..   ++ |+|+||..||..|+   ....+||+|
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45789999999988743   55 99999999999995   456789998

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=95.95  Aligned_cols=49  Identities=22%  Similarity=0.610  Sum_probs=41.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~~  154 (296)
                      ....|+||++.|.++..   ++ |||.||..||..|+.... +||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34789999999987643   55 999999999999998765 899999998753

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=2.8e-10  Score=89.71  Aligned_cols=47  Identities=34%  Similarity=0.774  Sum_probs=40.0

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCC---CCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK---TCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~---tCP~CR~~~~~  153 (296)
                      ...|+||++.|.++..   ++ |||.||..||..|+..+.   +||+||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4689999999987644   45 999999999999998654   89999998864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=86.53  Aligned_cols=48  Identities=29%  Similarity=0.584  Sum_probs=39.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++.   .++.|||.||..||..|+...  .+||+||..+.
T Consensus        12 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           12 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            4678999999998764   344499999999999999754  58999998874

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.94  E-value=2.7e-10  Score=91.29  Aligned_cols=48  Identities=29%  Similarity=0.495  Sum_probs=40.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++.   .++ |||.||..||..|+.... +||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCcCChhhcCeE---ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            4578999999998763   345 999999999999998765 89999998863

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.93  E-value=8.7e-11  Score=93.56  Aligned_cols=46  Identities=26%  Similarity=0.695  Sum_probs=39.5

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD  152 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~  152 (296)
                      +..|+||++.|.++..   ++ |||.||..||..|+.. ..+||+||..+.
T Consensus        15 ~~~C~iC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           15 ECQCGICMEILVEPVT---LP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHBCTTTCSBCSSCEE---CT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCccCCcccCceeE---cC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            4689999999987643   45 9999999999999976 668999999885

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.92  E-value=4.5e-10  Score=89.49  Aligned_cols=47  Identities=30%  Similarity=0.565  Sum_probs=40.3

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      ...|+||++.|.++..   ++ |||.||..||..|+.. ..+||+||..+..
T Consensus        23 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4689999999987643   45 9999999999999987 7789999998863

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.88  E-value=7.1e-10  Score=84.18  Aligned_cols=47  Identities=19%  Similarity=0.058  Sum_probs=41.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ..+.|+||++.|.++..   ++ |||+|+..||..||..+.+||+||..+.
T Consensus        13 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDPVR---LP-SGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             TTTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             hheECcccCchhcCCeE---CC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            46789999999998854   45 9999999999999999999999998875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.87  E-value=9.2e-10  Score=86.23  Aligned_cols=48  Identities=17%  Similarity=0.056  Sum_probs=42.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ..+.|+||++.|.++..   ++ |||+|+..||..||..+.+||+||..+..
T Consensus        28 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVR---LP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSSEEE---ET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccCCeE---CC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            46789999999998854   45 99999999999999999999999998863

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.86  E-value=6.2e-10  Score=77.80  Aligned_cols=47  Identities=30%  Similarity=0.655  Sum_probs=39.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ  155 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~~  155 (296)
                      ....|+||++.|.++   ..++ |+|.||..||..|   ...||+||+.+..+.
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            467899999999876   3456 9999999999885   678999999987543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.86  E-value=7.5e-10  Score=91.90  Aligned_cols=48  Identities=19%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..   ++ |||.||..||..|+.... +||+||.++..
T Consensus        30 ~~~~C~IC~~~~~~pv~---~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           30 AKYLCSACRNVLRRPFQ---AQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             cCcCCCCCChhhcCcEE---CC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            45789999999988733   45 999999999999998665 89999998754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.85  E-value=1.1e-09  Score=85.50  Aligned_cols=48  Identities=23%  Similarity=0.149  Sum_probs=42.1

Q ss_pred             CCccccccccccccCceeEEecccC-ceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCY-HVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ..+.|+||++.|.++..   ++ || |+|+..||..||..+.+||+||..+..
T Consensus        21 ~~~~CpI~~~~m~dPV~---~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVV---LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccCCeE---CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            45789999999998854   44 99 999999999999999999999998863

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.84  E-value=1.8e-09  Score=80.89  Aligned_cols=52  Identities=25%  Similarity=0.444  Sum_probs=40.2

Q ss_pred             CCccccccccccccCcee-EEecccCceechhhhHHHHh-cCCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDDNIL-RLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~-r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~~  154 (296)
                      ++..|+||++.+...+.. .-++ |||.||..||..|+. ....||+||+.+...
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            567899999998654322 2233 999999999999985 456799999998743

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.84  E-value=2.3e-09  Score=77.07  Aligned_cols=49  Identities=22%  Similarity=0.407  Sum_probs=39.4

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+.+|.||++.+.+.. +..+| |||. |+..|+..|+..+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3458999999876542 11237 9999 899999999998999999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.82  E-value=7.9e-10  Score=103.67  Aligned_cols=53  Identities=26%  Similarity=0.606  Sum_probs=41.2

Q ss_pred             cCCccccccccccccCcee----EEecccCceechhhhHHHHhcC-----------CCCCCcCcCCCC
Q 047079          101 KYGLECAICLAEFEDDNIL----RLLTVCYHVFHQECIDLWLESH-----------KTCPVCRSDLDL  153 (296)
Q Consensus       101 ~~~~~C~ICl~~~~~~~~~----r~lp~C~H~Fh~~CI~~Wl~~~-----------~tCP~CR~~~~~  153 (296)
                      ....+|+||++.+.++..+    -..++|+|.||..||.+||++.           .+||+||+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            3667999999999873322    2234699999999999999752           469999998853

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.80  E-value=3e-09  Score=101.74  Aligned_cols=47  Identities=28%  Similarity=0.699  Sum_probs=40.2

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~  153 (296)
                      ...|+||++.+.++   ..+| |||.||..||..|+. ...+||+||..+..
T Consensus       332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            46899999998653   4566 999999999999998 68889999998863

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.5e-09  Score=86.80  Aligned_cols=46  Identities=26%  Similarity=0.561  Sum_probs=39.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++..+  .+ |||.||..||..|+.  ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~--~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCL--GG-CEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCC--CS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEe--CC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            457899999999877433  24 999999999999998  78999999874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.77  E-value=3.5e-09  Score=75.82  Aligned_cols=49  Identities=18%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|.||++.+.+.. +..+| |||. ||..|+..|.+....||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3468999999865542 22236 9998 999999999988889999999874

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.64  E-value=1.4e-08  Score=77.93  Aligned_cols=48  Identities=23%  Similarity=0.668  Sum_probs=40.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc--------CCCCCC--cCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--------HKTCPV--CRSD  150 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~--CR~~  150 (296)
                      ....|+||++.|..++.+.+.+ |+|.||..||..|+..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3568999999999888777666 9999999999999863        236999  9877

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=86.41  Aligned_cols=48  Identities=29%  Similarity=0.506  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~~  153 (296)
                      ..+.|+||++.|.++.   .++ |||+||..||..|+... .+||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcCcE---ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            4578999999998873   255 99999999999999864 489999998853

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.4e-08  Score=78.31  Aligned_cols=48  Identities=27%  Similarity=0.571  Sum_probs=39.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC------CCCCC--cCcC-CC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH------KTCPV--CRSD-LD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~------~tCP~--CR~~-~~  152 (296)
                      ..+.|+||++.|.++..   ++.|||+|+..||..||..+      .+||+  |+.. +.
T Consensus         6 ~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             cEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            45789999999998754   32499999999999999864      48999  9866 53

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.60  E-value=1.7e-08  Score=90.86  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~  152 (296)
                      ....|+||++.|.++..   ++ |||+||..||..|+.. ..+||+||.++.
T Consensus       207 ~~~~c~i~~~~~~dPv~---~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          207 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             STTBCTTTCSBCSSEEE---CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             cccCCcCcCCHhcCCeE---CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            46889999999998854   45 9999999999999986 445999998885

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.59  E-value=5e-09  Score=77.24  Aligned_cols=43  Identities=21%  Similarity=0.544  Sum_probs=36.2

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ....|+||++.+.+.   ..+| |||. ||..|+..|    ..||+||..+.
T Consensus        23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            346899999987654   3566 9999 999999999    88999999875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.58  E-value=2.3e-08  Score=71.09  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=36.3

Q ss_pred             CCccccccccccccCceeEEecccC--c---eechhhhHHHHhc--CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCY--H---VFHQECIDLWLES--HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~--H---~Fh~~CI~~Wl~~--~~tCP~CR~~~~  152 (296)
                      ....|.||+++..  +.+ ++| |.  |   .||..||.+|+..  +.+||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4568999999843  333 466 65  4   9999999999974  678999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.44  E-value=6.4e-08  Score=83.41  Aligned_cols=47  Identities=21%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~  152 (296)
                      ..+.|+||++.|.++..+   + |||+|+..||..||..+ .+||+|+.++.
T Consensus       105 ~~f~CPI~~elm~DPV~~---~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~  152 (179)
T 2f42_A          105 DYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFDPVTRSPLT  152 (179)
T ss_dssp             GGGBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             HhhcccCccccCCCCeEC---C-CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence            568999999999987543   5 99999999999999864 47999998875

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=2.1e-07  Score=67.63  Aligned_cols=44  Identities=25%  Similarity=0.698  Sum_probs=35.9

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|.||++.+.+   +.++| |+|. ||..|+..    ...||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            45789999998643   55677 9999 99999984    5789999998863

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=6.8e-08  Score=71.15  Aligned_cols=43  Identities=21%  Similarity=0.583  Sum_probs=34.9

Q ss_pred             CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ...|+||++.+.+..   .+| |||. ||..|+..    ...||+||..+..
T Consensus        25 ~~~C~IC~~~~~~~~---~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAIV---FVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCBC---CSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCEE---Eec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            457999999986643   456 9999 99999964    4789999998853

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.37  E-value=1.2e-07  Score=67.55  Aligned_cols=47  Identities=15%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ..|+||++.+.++.   +++.|||+|...||.+||..+.+||+++.+|..
T Consensus         4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            57999999999773   342499999999999999988899999998863

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.35  E-value=6.5e-08  Score=72.33  Aligned_cols=43  Identities=28%  Similarity=0.694  Sum_probs=35.4

Q ss_pred             CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ...|.||++.+.+   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            4589999998654   45667 9999 999999987    389999998853

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.4e-07  Score=85.66  Aligned_cols=48  Identities=29%  Similarity=0.613  Sum_probs=40.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCC--cCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPV--CRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~--CR~~~~  152 (296)
                      ....|+||++.|.++..  .+ .|||+|+..||..|+..+  .+||+  |+..+.
T Consensus       180 ~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            56789999999988854  23 399999999999999864  46999  998774

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.08  E-value=6.6e-07  Score=84.51  Aligned_cols=43  Identities=26%  Similarity=0.675  Sum_probs=36.6

Q ss_pred             CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+..|+||++.+.+.   ..+| |||. ||..|+..|    ..||+||..+.
T Consensus       294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            567899999998654   4456 9999 999999998    78999999875

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.02  E-value=3.5e-06  Score=75.60  Aligned_cols=49  Identities=20%  Similarity=0.434  Sum_probs=40.4

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCC--CCCCcCcCCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK--TCPVCRSDLDLP  154 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~--tCP~CR~~~~~~  154 (296)
                      ..+|+||.+.+..+  .++- .|+|.||..|+..|++.+.  .||.|+..+...
T Consensus       180 i~~C~iC~~iv~~g--~~C~-~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQG--QSCE-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSC--EECS-SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCC--cccC-ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            57899999999976  3333 4999999999999998765  899999887543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.98  E-value=4.5e-06  Score=64.83  Aligned_cols=45  Identities=29%  Similarity=0.614  Sum_probs=37.0

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLD  152 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~  152 (296)
                      -|.+|--.|.  ...|++| |.|+||.+|+..|.+ ..++||.|+.++.
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            4788865554  4678888 999999999999985 5678999998875

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.83  E-value=0.0065  Score=43.56  Aligned_cols=47  Identities=28%  Similarity=0.533  Sum_probs=35.0

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~~~  152 (296)
                      ....|.||.+.   ++.+..- .|...||..|++..|...    -.||.|.....
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            45679999753   5555544 499999999999888653    36999976554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.15  E-value=0.01  Score=45.25  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=27.5

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHH
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW  137 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W  137 (296)
                      +..|.||++.+..+.....+. |+|.||..|+..|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            468999998765555566676 9999999999984

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=90.20  E-value=0.073  Score=37.30  Aligned_cols=48  Identities=19%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             CCcccccccccccc-CceeEEecccCceechhhhHHHHh-----cCCCCCCcCcC
Q 047079          102 YGLECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSD  150 (296)
Q Consensus       102 ~~~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~  150 (296)
                      +...|+||...+.+ +..|..- .|...||..|+..-..     ....||.|+..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            45679999998864 4456655 4999999999875432     35579999653

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=90.19  E-value=0.13  Score=44.03  Aligned_cols=47  Identities=26%  Similarity=0.539  Sum_probs=34.8

Q ss_pred             ccccccccccccCc----eeEEecccCceechhhhHHH------Hh-----cCCCCCCcCcCC
Q 047079          104 LECAICLAEFEDDN----ILRLLTVCYHVFHQECIDLW------LE-----SHKTCPVCRSDL  151 (296)
Q Consensus       104 ~~C~ICl~~~~~~~----~~r~lp~C~H~Fh~~CI~~W------l~-----~~~tCP~CR~~~  151 (296)
                      ..|+||...|.+++    .+.+- .|...||..|+.--      +.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            46999999998876    55555 49999999997531      11     157899997643

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=87.66  E-value=0.3  Score=36.50  Aligned_cols=34  Identities=21%  Similarity=0.584  Sum_probs=24.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHH
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW  137 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W  137 (296)
                      .+..|.||- .|...+.+..-- |+-+||..|+.+-
T Consensus        14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred             CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence            467899994 445555444433 9999999999985

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=87.44  E-value=0.23  Score=38.01  Aligned_cols=45  Identities=20%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCR  148 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR  148 (296)
                      ....| ||......+..|..-. |.-.||..|+..=+.   ....||.|+
T Consensus        27 d~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~   74 (98)
T 2lv9_A           27 DVTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQ   74 (98)
T ss_dssp             CBCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred             CCEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCc
Confidence            34568 8988777777776654 999999999875332   234699996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=86.90  E-value=0.25  Score=34.45  Aligned_cols=44  Identities=25%  Similarity=0.582  Sum_probs=31.7

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~  149 (296)
                      .+..|.||...   ++.+..- .|...||..|+..-+..    .-.||.|..
T Consensus        10 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A           10 HQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence            45689999873   4555544 59999999999986543    335999964

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=86.65  E-value=0.26  Score=32.77  Aligned_cols=44  Identities=30%  Similarity=0.657  Sum_probs=30.1

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS  149 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~  149 (296)
                      .|.||...-..++.+..- .|...||..|+++=|..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            488998764444455544 59999999999764432    224999964

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=86.54  E-value=0.22  Score=42.16  Aligned_cols=46  Identities=28%  Similarity=0.476  Sum_probs=33.1

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~  151 (296)
                      .+..|.||...   ++.+.. -.|.-.||..|+++-|..    .-.||.|+..-
T Consensus         3 ~~~~C~~C~~~---g~ll~C-d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---GELLCC-EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---SSCEEC-SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---Ceeeec-CCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            34679999854   554444 459999999999887654    23599998654

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=86.26  E-value=0.2  Score=43.26  Aligned_cols=46  Identities=30%  Similarity=0.424  Sum_probs=33.0

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~~  151 (296)
                      .+..|.+|...   ++ +.+-..|...||..|+++.|...    -.||.|+..-
T Consensus         6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            45679999754   44 44444599999999998877542    3599997543

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=86.15  E-value=0.14  Score=37.07  Aligned_cols=50  Identities=16%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~~  152 (296)
                      ....|.||.........+..- .|.-.||..|+..-+..    .-.||.|+..+.
T Consensus        17 ~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           17 QIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             EEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            345699998876433455544 49999999999865532    446999976553

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=83.92  E-value=0.39  Score=37.17  Aligned_cols=46  Identities=24%  Similarity=0.558  Sum_probs=31.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCR  148 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR  148 (296)
                      .+..|.||.+.=...+.+..- .|...||..|++.++..    .-.||.|+
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence            567899998763333335544 59999999999987642    23477664

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=83.81  E-value=0.27  Score=34.24  Aligned_cols=46  Identities=22%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~  151 (296)
                      .+..|.||...   ++.+..- .|...||..|+..-|..    .-.||.|+...
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            8 HMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            45679999753   4444444 48999999999865543    23599997543

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=83.59  E-value=0.6  Score=34.02  Aligned_cols=48  Identities=21%  Similarity=0.565  Sum_probs=33.8

Q ss_pred             CCccccccccccc-cCceeEEecccCceechhhhHHHHh-----cCCCCCCcCcCC
Q 047079          102 YGLECAICLAEFE-DDNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~~  151 (296)
                      ....| ||...+. .+..|..-. |...||..|+.--..     ....||.|+...
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            34567 9998875 455666654 999999999863321     355799998654

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.02  E-value=0.18  Score=34.47  Aligned_cols=44  Identities=27%  Similarity=0.634  Sum_probs=30.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~  149 (296)
                      .+..|.||...   ++.+..- .|...||..|+++-|..    .-.||.|..
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            8 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            45679999874   4555444 59999999999865543    224887753

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=82.46  E-value=0.3  Score=35.71  Aligned_cols=49  Identities=22%  Similarity=0.448  Sum_probs=34.3

Q ss_pred             CCccccccccccccCceeEEec-ccCceechhhhHHHH---------hcCCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLT-VCYHVFHQECIDLWL---------ESHKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp-~C~H~Fh~~CI~~Wl---------~~~~tCP~CR~~~  151 (296)
                      ....| ||......+.+|..-. .|...||..|+.---         ..+..||.|+..-
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            45678 8998866676776651 399999999986422         1355799997644

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.34  E-value=0.88  Score=34.25  Aligned_cols=45  Identities=20%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSD  150 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~  150 (296)
                      .+..|.||...   ++.+.. ..|.-.||..|+++=|..    .-.||.|...
T Consensus        24 n~~~C~vC~~~---g~LL~C-D~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           24 SATICRVCQKP---GDLVMC-NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSCCSSSCSS---SCCEEC-TTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCcCcCcCCC---CCEEEC-CCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            45689999864   444444 358999999999876643    2259999754

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=81.70  E-value=0.25  Score=38.33  Aligned_cols=49  Identities=24%  Similarity=0.567  Sum_probs=33.9

Q ss_pred             ccccccccccccCc-eeEEecccCceechhhhHHHH----------hcCCCCCCcCcCCC
Q 047079          104 LECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWL----------ESHKTCPVCRSDLD  152 (296)
Q Consensus       104 ~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl----------~~~~tCP~CR~~~~  152 (296)
                      ..|.||...+.++. .+..-..|.-.||..|+.---          .....||.|+....
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~   63 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE   63 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence            57999999986543 444432488999999986321          03457999976543

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.57  E-value=0.32  Score=35.18  Aligned_cols=47  Identities=23%  Similarity=0.518  Sum_probs=34.1

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHH---------hcCCCCCCcCcCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL---------ESHKTCPVCRSDL  151 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---------~~~~tCP~CR~~~  151 (296)
                      ...| ||...+..+..|..-. |...||..|+..-.         .....||.|+..-
T Consensus        16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~   71 (76)
T 1wem_A           16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence            3567 8998877666777664 99999999985321         2467899997543

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=80.59  E-value=0.32  Score=34.75  Aligned_cols=46  Identities=20%  Similarity=0.507  Sum_probs=32.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR~  149 (296)
                      ....| ||...+.....|..-. |...||..|+..--.   ....||.|+.
T Consensus        18 ~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~   66 (68)
T 3o70_A           18 GLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD   66 (68)
T ss_dssp             TCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred             CceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence            45678 9988776555777665 999999999874321   3456888854

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=80.21  E-value=0.84  Score=30.55  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             cccccccccccCc-eeEEecccCceechhhhHHHH----hcCCCCCCcC
Q 047079          105 ECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWL----ESHKTCPVCR  148 (296)
Q Consensus       105 ~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl----~~~~tCP~CR  148 (296)
                      .|.||...+.++. .+..-..|.--||..|+.--.    .....||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            4788988886544 444331388899999976432    2566799985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-20
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-14
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-13
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-12
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-08
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	4e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	5e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	1e-05

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 80.7 bits (199), Expect = 2e-20
 Identities = 28/49 (57%), Positives = 34/49 (69%)

Query: 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151
           G+ECA+CLAE ED    R L  C H FH EC+D+WL SH TCP+CR  +
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 64.2 bits (156), Expect = 3e-14
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
            C ICL +  + ++      C H F   CI  W+  + TCP+C+  ++
Sbjct: 7   RCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 4e-13
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 105 ECAICLAEFEDDNI--------------LRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150
            CAIC     D  I                   VC H FH  CI  WL++ + CP+   +
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 82

Query: 151 LDLPQ 155
            +  +
Sbjct: 83  WEFQK 87

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 6e-12
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLD 152
           +EC +C+   E D+I      C +   + C        +  CP CR    
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 5e-11
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQN 156
           L C  C AE +   +L     C H     C++        CP+C++   L  +
Sbjct: 7   LRCQQCQAEAKCPKLLP----CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 6e-11
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 106 CAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD 152
           C IC    +D  I      C H+    C+  W ES  + CP CR ++ 
Sbjct: 26  CKICAENDKDVKIEP----CGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-10
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 104 LECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLD 152
             C  C        ++  ++ VC H   + C+DL        CP C + L 
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK---TCPVCRSDLDLPQNSLEK 160
           LEC ICL   ++    +    C H+F + C+   L   K    CP+C++  D+ + SL++
Sbjct: 22  LECPICLELIKEPVSTK----CDHIFCKFCMLKLLNQKKGPSQCPLCKN--DITKRSLQE 75

Query: 161 SPLL 164
           S   
Sbjct: 76  STRF 79

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 104 LECAICLAEFEDDNILR-LLTVCYHVFHQECIDLWLESH--KTCPVCRS 149
             C IC  E  ++       T      H+ C+  WL       C +C  
Sbjct: 7   PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCR-----SDLDLPQNS 157
           + C IC     D     + T C H+F + CI   L+     CP CR     +DL+ P  S
Sbjct: 24  ISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKS 79

Query: 158 L 158
            
Sbjct: 80  F 80

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK--------TCP--VCRSDLDLP 154
            C +CL E+  + +  +   C  +F   C+  ++E           +CP   C     L 
Sbjct: 7   GCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65

Query: 155 QNSLEK 160
           +N +E 
Sbjct: 66  ENEIEC 71

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRS 149
              +  ++     ++  LT C H FH  C+     +        CP C++
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 5e-06
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155
           L C+ C     +   L     C H+F   C+   +     CPVC +   +  
Sbjct: 23  LRCSRCTNILREPVCL---GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQD 69

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 1e-05
 Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152
           + CAI         +         +F +  ++ +++     P+    L 
Sbjct: 1   MLCAISGKVPRRPVLSP---KSRTIFEKSLLEQYVKDTGNDPITNEPLS 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.69
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.49
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.46
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.45
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.38
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.32
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.09
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.06
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.05
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.98
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.84
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.84
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.7
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.58
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	93.44
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	91.55
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	90.79
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	88.02
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	86.5
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	83.86
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	83.29
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	81.76

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.69  E-value=6.6e-18  Score=117.30  Aligned_cols=51  Identities=55%  Similarity=1.140  Sum_probs=46.9

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ++.+|+||+++|.+++.+..++.|+|.||.+||.+||+.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            456899999999999998888779999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.49  E-value=9e-15  Score=105.29  Aligned_cols=48  Identities=31%  Similarity=0.816  Sum_probs=41.6

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      ...+|+||++.|.++  ++.++ |+|.||.+||..||+.+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            346899999999754  45666 9999999999999999999999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-14  Score=110.19  Aligned_cols=50  Identities=30%  Similarity=0.664  Sum_probs=42.1

Q ss_pred             CCccccccccccccCc---------------eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDN---------------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~  152 (296)
                      .+.+|+||++.+.+..               .+..++ |+|+||..||..||+.+.+||+||+++.
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            4567999999887633               245565 9999999999999999999999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1e-14  Score=99.69  Aligned_cols=49  Identities=24%  Similarity=0.525  Sum_probs=40.3

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD  152 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~  152 (296)
                      .+|+||+++|..++....+.+|||.||..||++|++.+ .+||+||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            47999999998776543333499999999999999864 46999999885

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.4e-13  Score=108.27  Aligned_cols=52  Identities=25%  Similarity=0.537  Sum_probs=40.0

Q ss_pred             CCccccccccccccC---------------ceeEEecccCceechhhhHHHHhc-----CCCCCCcCcCCCCC
Q 047079          102 YGLECAICLAEFEDD---------------NILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRSDLDLP  154 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~---------------~~~r~lp~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~~~~~~  154 (296)
                      .+..|+||++.|..+               ..+.+++ |+|+||..||+.||+.     +.+||+||+.+...
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            346799999998642               2344555 9999999999999975     34799999887543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.4e-13  Score=95.48  Aligned_cols=50  Identities=24%  Similarity=0.535  Sum_probs=39.2

Q ss_pred             CccccccccccccC-c-eeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDD-N-ILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~-~-~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      +..|+||++.+..+ + .+.+++ |+|.||.+||..||.. +.+||+||+.+..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            46899999987543 3 334445 9999999999999965 5579999998853

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.1e-13  Score=97.66  Aligned_cols=46  Identities=30%  Similarity=0.800  Sum_probs=39.2

Q ss_pred             ccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079          104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL  153 (296)
Q Consensus       104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~  153 (296)
                      ..|+||++.+.+   .++++ |||.||..||..||.. .++||+||..+..
T Consensus        24 ~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            469999998765   45676 9999999999999975 5689999999964

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.5e-12  Score=89.93  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=40.3

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      .|+||++.|.++.   .++.|||+||.+||.+||+.+.+||+||.++..
T Consensus         2 ~C~Ic~~~~~~Pv---~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcC---ccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            6999999998764   334599999999999999999999999998864

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-11  Score=85.59  Aligned_cols=46  Identities=30%  Similarity=0.668  Sum_probs=38.4

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ  155 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~~  155 (296)
                      .++|+||++.|.++.   ++| |||+||..||+.|   +.+||+||+++....
T Consensus         6 ~l~C~IC~~~~~~p~---~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccCCCE---Eec-CCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            468999999998763   456 9999999999876   678999999997543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-11  Score=93.62  Aligned_cols=47  Identities=34%  Similarity=0.774  Sum_probs=39.5

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcCC---CCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK---TCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~---tCP~CR~~~~~  153 (296)
                      .+.|+||++.|.++..   ++ |||+||..||..|+....   .||+||..+..
T Consensus        21 ~l~CpIC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CcCCCccCchhCCeEE---cC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            4689999999987743   45 999999999999997653   79999998853

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.06  E-value=3.1e-11  Score=84.15  Aligned_cols=51  Identities=22%  Similarity=0.466  Sum_probs=38.4

Q ss_pred             CCccccccccccccCceeE-EecccCceechhhhHHHHh--cCCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILR-LLTVCYHVFHQECIDLWLE--SHKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r-~lp~C~H~Fh~~CI~~Wl~--~~~tCP~CR~~~~  152 (296)
                      +...|.||++.+.+..... ...+|+|.||..||..|+.  .+.+||+||+.+.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4578999999987654322 1123579999999999995  4568999998874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=2.7e-11  Score=90.77  Aligned_cols=47  Identities=30%  Similarity=0.566  Sum_probs=39.1

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDL  153 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~~  153 (296)
                      ...|+||++.|.++   .+++ |||.||..||..|++.+ .+||.||.++..
T Consensus        23 ~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            36799999999776   3455 99999999999999754 579999998753

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.2e-11  Score=90.33  Aligned_cols=47  Identities=26%  Similarity=0.569  Sum_probs=38.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ....|+||++.|.++..  +.+ |||.||..||..|+.  ..||.||..+..
T Consensus        21 ~~l~C~IC~~~~~~pv~--~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVC--LGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             HTTSCSSSCSCCSSCBC--CCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hcCCCccCCchhhcCce--eCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            34689999999988743  334 999999999999985  359999988753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=8.2e-10  Score=80.60  Aligned_cols=48  Identities=25%  Similarity=0.514  Sum_probs=40.8

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~~  153 (296)
                      .++.|+||++.|.++.   +++ |||.||..||..|+..+ .+||.|+..+..
T Consensus         7 ~~l~CpIc~~~m~dPV---~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDPV---IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEE---EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhCce---Ecc-CCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            4688999999999884   355 99999999999999864 569999988764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.9e-10  Score=81.46  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD  152 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~  152 (296)
                      +.+.|+||++.|.++.   .++ |||.|+..||..||.. +.+||+||..+.
T Consensus         6 ~~l~CpIc~~l~~dPv---~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           6 DYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             STTBCTTTCSBCSSEE---ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             ccccCcCcCchhhhhc---ccC-CcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            5678999999999884   345 9999999999999975 557999998875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.6e-09  Score=80.71  Aligned_cols=49  Identities=22%  Similarity=0.140  Sum_probs=41.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL  153 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~  153 (296)
                      ..+.|+||++.|.++..   ++.|+|.|+..||..||..+.+||+||.++..
T Consensus        21 ~~f~CPI~~~lm~dPV~---~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVV---LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHHHHh---cccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            45899999999999854   34355699999999999999999999998853

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-08  Score=76.50  Aligned_cols=47  Identities=21%  Similarity=0.600  Sum_probs=38.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc--------CCCCCCcCc
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--------HKTCPVCRS  149 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~CR~  149 (296)
                      +..+|+||++++...+.+.+++ |+|.||.+||..|++.        ..+||.|..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4578999999998877777665 9999999999999953        125998754

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.013  Score=37.74  Aligned_cols=44  Identities=30%  Similarity=0.669  Sum_probs=31.5

Q ss_pred             cccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCc
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRS  149 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~  149 (296)
                      .|.||...-..+..+.. -.|...||..|++.-+...    -.||.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~C-d~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILC-DECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEEC-TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEc-CCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            48899776555545544 4599999999999876532    24999974

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.06  Score=36.91  Aligned_cols=45  Identities=20%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             CccccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCcCC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRSDL  151 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~~  151 (296)
                      ...|.||..   .++.+..- .|...||..|+...+...    -.||.|+..-
T Consensus         7 c~~C~~C~~---~~~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCS---SSCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCC---cCEEEECC-CCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            346777754   35555544 499999999999887543    3599996443

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.79  E-value=0.036  Score=37.24  Aligned_cols=49  Identities=22%  Similarity=0.581  Sum_probs=34.2

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHH---h--cCCCCCCcCcC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL---E--SHKTCPVCRSD  150 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---~--~~~tCP~CR~~  150 (296)
                      ....|.||...+.+++....-..|+..||..|+..=.   .  .+..||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3468999998887765433334599999999986321   1  24579999754

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.059  Score=35.90  Aligned_cols=46  Identities=22%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL  151 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~  151 (296)
                      ....|.||.+   .++.+..- .|.-.||..|++..+..    .-.||.|+...
T Consensus         8 ~~~~C~~C~~---~g~lv~Cd-~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           8 HMEFCRVCKD---GGELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCC---CSSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CcCCCcCCCC---CCeEEEeC-CCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            3457999975   35555544 49999999999876643    33699997543

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.50  E-value=0.25  Score=28.50  Aligned_cols=28  Identities=18%  Similarity=0.522  Sum_probs=24.4

Q ss_pred             cccccccccccCceeEEecccCceechhhh
Q 047079          105 ECAICLAEFEDDNILRLLTVCYHVFHQECI  134 (296)
Q Consensus       105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI  134 (296)
                      .|+-|...|...+.++.-.  +++||..|.
T Consensus         4 ~Ca~C~~~I~~~e~VmRA~--~~VyHl~CF   31 (31)
T d1rutx3           4 ACSACGQSIPASELVMRAQ--GNVYHLKCF   31 (31)
T ss_dssp             ECTTTCCEECTTSEEEEET--TEEECGGGC
T ss_pred             ccccccCcCChhHhheecc--cceeeeccC
Confidence            5999999999999888765  899999994

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.86  E-value=0.59  Score=32.30  Aligned_cols=45  Identities=18%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             ccccccccccCc-eeEEecccCceechhhhH--HHH-h--cCCCCCCcCcCC
Q 047079          106 CAICLAEFEDDN-ILRLLTVCYHVFHQECID--LWL-E--SHKTCPVCRSDL  151 (296)
Q Consensus       106 C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~--~Wl-~--~~~tCP~CR~~~  151 (296)
                      |-||...+..+. .|..- .|.-.||..|+.  ..- .  .+..||.|+...
T Consensus        14 ~CiC~~~~~~~~~mI~Cd-~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          14 YCLCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CSTTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             EeECCCccCCCCcEEECC-CCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            339998776554 45554 499999999985  222 2  246799997654

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.25  Score=34.96  Aligned_cols=34  Identities=21%  Similarity=0.611  Sum_probs=26.5

Q ss_pred             CCccccccccccccCceeEEecccCceechhhhHHH
Q 047079          102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW  137 (296)
Q Consensus       102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W  137 (296)
                      .+.-|.|| +.|...+.+..-- |+-+||..|+.+-
T Consensus        14 ~D~mC~vC-~v~t~~~l~pCRv-CtRv~H~~CL~r~   47 (89)
T d1wila_          14 NDEMCDVC-EVWTAESLFPCRV-CTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred             cCcccccc-Ccccccceeccee-ecchhhHHHHHHh
Confidence            46789999 7777776554333 8999999999985

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.76  E-value=0.39  Score=32.72  Aligned_cols=46  Identities=24%  Similarity=0.526  Sum_probs=32.0

Q ss_pred             CccccccccccccCceeEEecccCceechhhhH------HH---HhcCCCCCCcCcC
Q 047079          103 GLECAICLAEFEDDNILRLLTVCYHVFHQECID------LW---LESHKTCPVCRSD  150 (296)
Q Consensus       103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~------~W---l~~~~tCP~CR~~  150 (296)
                      ...| ||......+..|..-. |.-.||..|+.      ..   ......||.|+..
T Consensus        16 ~~~C-iC~~~~~~~~mi~Cd~-C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             cCEE-ECCCccCCCeEEEECC-CCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            3458 8988776666666654 99999999982      11   1235789999543