Citrus Sinensis ID: 047095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Secondary Structure (PSIPRED)
cHHHHHHHcccHHHHHHHccccccccccccccEEEEcccccccccEEEcccEEEEEcccccHHHHHHHHcccccHHHHHHHHcccccccccccccEEEEEEcccccccccccccccEEEEEEcccccHHHHHHHHcccHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccHHHHHHHccccccccccccccEEEEEEEcccccccEEEEEEEEEEcccccHHHHHHHHHcccccHHHHHHHcccccccccccccEEEEEEEccccccccccccEEEEEEEEcccccHHHHHHHHcccHHHHHHHccccccccEEEEEEccccccccccccccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MTFISEMFDTSIdnilsfnpqvpdkdilsvgsrikvpfkcncingqflannfsykiishDTYAKVAETYYANLTTVDwlrannifpdnnipdvntTINVVVNcscgdkkvskdyglfltypielgenlstianmsglspellqsynrgsdfssglvfipekdqsgkypplqmsrdgtdfFECASLLLI
Flexible Loop (DISEMBL)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Low Complexity Region (SEG)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Disordered region (IsUnstruct)
******MFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGL***LL***********GLVFI********************FFECAS****
Disordered Region (DISOPRED)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQS***************FECASLLLI
Disordered Region (DISEMBL)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Disordered Region (DISPRO)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKYPPLQMSRDGTDFFECASLLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
A8R7E6	617	Chitin elicitor receptor	yes	no	0.925	0.282	0.483	5e-43
D7UPN3	605	Chitin elicitor receptor	yes	no	0.904	0.280	0.405	4e-31
Q8H8C7	356	Chitin elicitor-binding p	no	no	0.808	0.426	0.264	1e-05
Q93ZH0	416	LysM domain-containing GP	no	no	0.75	0.338	0.234	2e-05
Q6NPN4	423	LysM domain-containing GP	no	no	0.670	0.297	0.246	2e-05

>sp|A8R7E6|CERK1_ARATH Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1 PE=1 SV=1

 Score =  173 bits (439), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 125/178 (70%), Gaps = 4/178 (2%)

Query: 13  DNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYAN 72
           D IL +N  + DKD + +GSR+ VPF C C  G FL +NFSY +   DTY +VA + YAN
Sbjct: 64  DPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYAN 123

Query: 73  LTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIA 132
           LTT++ L+A N FP  NIP ++ T+NV+VNCSCGD+ VSKD+GLF+TYP+   ++LS+IA
Sbjct: 124 LTTMESLQARNPFPATNIP-LSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIA 182

Query: 133 NMSGLSPELLQSYNRGSDFSS--GLVFIPEKDQSGKYPPLQMSR-DGTDFFECASLLL 187
             SG+S ++LQ YN G +F+S  G+V++P +D +G +PP + S+ DG      A +++
Sbjct: 183 RSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKSSKQDGVGAGVIAGIVI 240

Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity toward both biotic and abiotic stresses (e.g. tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection). Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to pathogenic fungi Alternaria brassicicola and Erysiphe cichoracearum, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP). Plays an essential role in detecting peptidoglycans (e.g. PGNs) and restricting bacterial growth. Target of the bacterial type III effector E3-ligase protein hopAB2/avrPtoB of Pseudomonas syringae pv. tomato DC3000 that mediates ubiquitination and subsequent proteolysis, thus blocking all defense responses by suppressing PAMP-triggered immunity (PTI).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|D7UPN3|CERK1_ORYSJ Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica GN=CERK1 PE=1 SV=1

 Score =  134 bits (336), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 104/190 (54%), Gaps = 20/190 (10%)

Query: 1   MTFISEMFDTS---IDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN------GQFLANN 51
           +TFI+ +F         +L +NP + + D +  G R+ VPF C+C+         FLA  
Sbjct: 45  LTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLVPFPCSCLGLPAAPASTFLAGA 104

Query: 52  FSYKII----SHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGD 107
             Y +       DTY  VA  Y A+LTT  WL A N +P   IP  +  +NV +NCSCGD
Sbjct: 105 IPYPLPLPRGGGDTYDAVAANY-ADLTTAAWLEATNAYPPGRIPGGDGRVNVTINCSCGD 163

Query: 108 KKVSKDYGLFLTYPIELGENLSTIANMSGLSP----ELLQSYNRGSDFSS--GLVFIPEK 161
           ++VS  YGLFLTYP+  GE L ++A   G S     EL++ YN G    S  G+VFIP K
Sbjct: 164 ERVSPRYGLFLTYPLWDGETLESVAAQYGFSSPAEMELIRRYNPGMGGVSGKGIVFIPVK 223

Query: 162 DQSGKYPPLQ 171
           D +G Y PL+
Sbjct: 224 DPNGSYHPLK 233

Plays an essential role in detecting peptidoglycans (e.g. PGNs) and restricting bacterial growth. Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands (By similarity). Lysin motif (LysM) receptor kinase required as a cell surface receptor for chitin elicitor (chitooligosaccharides) signaling leading to innate immunity in response to both biotic and abiotic stresses. Involved in the resistance to pathogenic fungi, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 3   FISEMFDTSIDNILSFNPQVPDKDI----LSVGSRIKVPFKCNCINGQFLANNF--SYKI 56
            ++    T++ ++L  N  +PD  +    ++  S +K+PF+C C NG    ++    Y +
Sbjct: 58  LVARFNTTTLPDLLGAN-GLPDGTLSSAPVAANSTVKIPFRCRC-NGDVGQSDRLPIYVV 115

Query: 57  ISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGL 116
              D    +A   +    T   + A N  PD N  +V+ T+ + + CSC DK+   +  +
Sbjct: 116 QPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSC-DKEEGSNV-M 173

Query: 117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGK 166
            L Y +  GEN S IA   G++   L + N+  D        P K Q G+
Sbjct: 174 HLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDD--------PTKLQMGQ 215

Chitin elicitor-binding protein involved in the perception and transduction of chitin oligosaccharide elicitor signal for defense responses.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 34  IKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDV 93
           +K+P  C+C++G   + +  YK    D    +A++ Y  L + + ++  N   D ++ DV
Sbjct: 92  LKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLLDV 151

Query: 94  NTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNR--GSDF 151
            T++ + + C+C +   +    ++L+Y ++  + L  IA     +   L + N     D 
Sbjct: 152 GTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDV 211

Query: 152 SSG-LVFIPEKDQSGKYPPLQMSRDGTDF 179
           SSG ++ +P    + K+P     R  +DF
Sbjct: 212 SSGDILAVPLSACASKFP-----RYASDF 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM3 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 4   ISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYA 63
           +S +   SID  +S+ P V +  +L     +K+P  C+C++G   + +  YK  + DT  
Sbjct: 63  VSMLLSNSID--ISY-PDV-ENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLG 118

Query: 64  KVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIE 123
            +A++ Y  L + + ++  N   D ++ DV T + + + C+C +        L+L+Y + 
Sbjct: 119 SIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVR 178

Query: 124 LGENLSTIAN 133
             + ++ IA 
Sbjct: 179 GIDTMAGIAK 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
302144092	650	unnamed protein product [Vitis vinifera]	0.914	0.264	0.56	6e-50
255554785	607	receptor protein kinase, putative [Ricin	0.920	0.285	0.511	1e-46
359483329	619	PREDICTED: proline-rich receptor-like pr	0.914	0.277	0.491	4e-46
297739193	625	unnamed protein product [Vitis vinifera]	0.920	0.276	0.522	2e-45
350539601	613	Lyk12 precursor [Solanum lycopersicum] g	0.930	0.285	0.511	2e-45
345843150	618	Lyk11 [Nicotiana benthamiana]	0.936	0.284	0.502	3e-45
147770294	596	hypothetical protein VITISV_005320 [Viti	0.925	0.291	0.514	4e-45
147833187	2252	hypothetical protein VITISV_030803 [Viti	0.851	0.071	0.564	2e-44
350539591	624	Lyk11 precursor [Solanum lycopersicum] g	0.946	0.285	0.486	2e-43
356557941	625	PREDICTED: proline-rich receptor-like pr	0.925	0.278	0.483	2e-43

>gi|302144092|emb|CBI23197.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 3/175 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           + FI+  F   +  I SFNPQ+ + D++  G R+ VPF C CI+ +FL   F Y    +D
Sbjct: 75  LNFIATTFSRDVSEIQSFNPQITNIDLIIAGERVNVPFSCGCIDREFLGTTFVYSAKQND 134

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY+ +AE Y+ANLTTV+WL+  N +   NIP ++  INV VNCSCG+  VSKDYGLF+TY
Sbjct: 135 TYSIIAEKYFANLTTVEWLQRFNTYAPTNIP-IDAPINVTVNCSCGNSSVSKDYGLFVTY 193

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMS 173
           P+E GENLSTIAN SGL P+LLQ YN  SDFS  SGLVFIP KDQ+  YPPL++S
Sbjct: 194 PLEPGENLSTIANQSGLPPQLLQDYNPDSDFSRGSGLVFIPGKDQNETYPPLKLS 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554785|ref|XP_002518430.1| receptor protein kinase, putative [Ricinus communis] gi|223542275|gb|EEF43817.1| receptor protein kinase, putative [Ricinus communis]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 125/176 (71%), Gaps = 3/176 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +TFIS +F  S+  IL +NP V ++D +  G+RI VPF C+C+NG FL + F Y   + D
Sbjct: 43  LTFISTLFSKSLPEILRYNPHVSNQDSILAGTRINVPFSCDCLNGDFLGHTFIYTTQTGD 102

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY K+A   +ANLTT DW+   NI+    IPD +  INV +NCSCGDK+VSK+YGLF T+
Sbjct: 103 TYDKIANIAFANLTTEDWVHRVNIYDTTRIPD-DAPINVTLNCSCGDKRVSKNYGLFATF 161

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMSR 174
           P++ GEN S++A  SG+S +LLQSYN G +FS  SG+V++P KD +G YPPL++ +
Sbjct: 162 PLQPGENSSSLATASGVSADLLQSYNPGVNFSAGSGIVYVPAKDATGNYPPLKIRK 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483329|ref|XP_002264327.2| PREDICTED: proline-rich receptor-like protein kinase PERK13-like [Vitis vinifera]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 123/175 (70%), Gaps = 3/175 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +T+I ++F   I  IL +NPQ+ ++D +  GSRI VPF+C+C+NG FL + F Y     D
Sbjct: 51  LTYIRKIFGREISEILKYNPQIENQDSIDTGSRINVPFRCDCLNGDFLGHTFEYTTQFGD 110

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY ++AE  ++NLTT DW+   N +P   IPD +  INV VNCSCG+++VS  YGLF TY
Sbjct: 111 TYDRIAERAFSNLTTEDWVHRVNEYPPTRIPD-DVQINVTVNCSCGNRRVSMKYGLFATY 169

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFSS--GLVFIPEKDQSGKYPPLQMS 173
           P+  GENLST+A  +G++ +L++ YN  +DFS+  GLVF+P KDQ+  YPPL++S
Sbjct: 170 PLRDGENLSTVAAAAGITDDLVRRYNPAADFSAGTGLVFVPAKDQNETYPPLKLS 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739193|emb|CBI28844.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 125/176 (71%), Gaps = 3/176 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFK-CNCINGQFLANNFSYKIISH 59
           +TFIS++F T+I  ILS+N Q+ ++D +   +RI+VP+  C+CING+FL   F+Y + S 
Sbjct: 42  LTFISQLFQTTISEILSYNSQIANQDSVEADTRIRVPYSSCDCINGEFLGKVFNYTVQSG 101

Query: 60  DTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLT 119
           DTY  VAETYY+NLTT  WL+  N +  N IPD +  +NV +NCSCG+  VSKDYGLFL+
Sbjct: 102 DTYDLVAETYYSNLTTSAWLQNFNSYAANQIPDTDAYLNVTLNCSCGNSTVSKDYGLFLS 161

Query: 120 YPIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMS 173
           YP+   +NL+++A   GL+  LLQSYN  S+FS  SGLV+IP KD SG Y  L+ S
Sbjct: 162 YPLRPEDNLTSVAESEGLNASLLQSYNPDSNFSAGSGLVYIPTKDTSGSYRALKSS 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539601|ref|NP_001234725.1| Lyk12 precursor [Solanum lycopersicum] gi|345843158|gb|AEO18235.1| Lyk12 [Solanum lycopersicum]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 122/178 (68%), Gaps = 3/178 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +T+IS +F+ +I  IL++NPQ+ ++D +++ +RI +PF C+C+NG FL + F YK +  D
Sbjct: 45  LTYISHLFNLTIPVILNYNPQITNQDSITIDTRINLPFSCDCLNGDFLGHTFVYKTVFGD 104

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY KVA   +ANLTT  WL+  N +   NIPD    INV VNCSCGD +VS DYGLF TY
Sbjct: 105 TYKKVATMAFANLTTEYWLKRVNNYDPTNIPDY-AMINVTVNCSCGDGEVSDDYGLFATY 163

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDF--SSGLVFIPEKDQSGKYPPLQMSRDG 176
           PI  GENLST+A  SG+  ELLQ +N G DF   SG+VF+P +D  G +PPL+    G
Sbjct: 164 PIRPGENLSTVAVGSGVPAELLQKFNPGLDFGSGSGIVFVPARDAHGNFPPLKTRSRG 221

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345843150|gb|AEO18231.1| Lyk11 [Nicotiana benthamiana]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 126/179 (70%), Gaps = 3/179 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +TFIS  F T+I NILS+NPQ+ + D +   SR+ VPF C+C+NG+F+ + F  ++    
Sbjct: 44  LTFISTSFSTTIKNILSYNPQITNPDKVQFQSRVNVPFSCSCVNGEFMGHQFDLQVKGST 103

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY ++   YY+NLTTV+ L+ +N +  NN+P VN+ + V+VNCSCG+ +VSKDYGLF+TY
Sbjct: 104 TYPRIVRLYYSNLTTVEMLQKSNSYDPNNVP-VNSIVKVIVNCSCGNSQVSKDYGLFITY 162

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMSRDGT 177
           PI   E L+TIAN   L  +LL+ YN  ++FS  +GLVFIP KDQ+G YPPL+ S   T
Sbjct: 163 PIRPNETLATIANDFKLPQKLLEDYNPEANFSRGTGLVFIPGKDQNGTYPPLRTSTSST 221

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770294|emb|CAN62472.1| hypothetical protein VITISV_005320 [Vitis vinifera]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 3/177 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFK-CNCINGQFLANNFSYKIISH 59
           +TFIS++F T+I  ILS+N Q+ ++D +   +RI+VP+  C+CING+FL   F+Y + S 
Sbjct: 82  LTFISQLFQTTISEILSYNSQIANQDSVEADTRIRVPYSSCDCINGEFLGKVFNYTVQSG 141

Query: 60  DTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLT 119
           DTY  VAETYY+NLTT  WL+  N +  N IPD +  +NV +NCSCG+  VSKDYGLFL+
Sbjct: 142 DTYDLVAETYYSNLTTSAWLQNFNSYAANQIPDTDAYLNVTLNCSCGNSTVSKDYGLFLS 201

Query: 120 YPIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMSR 174
           YP+   +NL+++A   GL+  LLQSYN  S+FS  SGLV+IP KD SG Y  L+  +
Sbjct: 202 YPLRPEDNLTSVAESEGLNASLLQSYNPDSNFSAGSGLVYIPTKDTSGSYRALKSRK 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833187|emb|CAN68636.1| hypothetical protein VITISV_030803 [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 118/163 (72%), Gaps = 3/163 (1%)

Query: 1    MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
            ++FI+  F TSI  I SFNPQ+ D D++ V +R+ +PF C+CI+G+FL + F Y + S+D
Sbjct: 1686 LSFIATAFSTSISEIQSFNPQINDIDLIIVDTRLNIPFSCSCIDGEFLGHTFFYSVDSND 1745

Query: 61   TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
            TY  +A T YANLTTV+WL   N +    IP VN  INV VNCSCG+ +VSK YGLF+TY
Sbjct: 1746 TYNIIARTXYANLTTVEWLERFNRYEATEIP-VNAJINVTVNCSCGNSRVSKKYGLFVTY 1804

Query: 121  PIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEK 161
            P++ GE+LS+IAN SGL  +LLQ YN G DFS  SGLVFIP K
Sbjct: 1805 PLQPGESLSSIANESGLPSKLLQDYNPGVDFSLGSGLVFIPGK 1847

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539591|ref|NP_001234719.1| Lyk11 precursor [Solanum lycopersicum] gi|345843156|gb|AEO18234.1| Lyk11 [Solanum lycopersicum]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 126/181 (69%), Gaps = 3/181 (1%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +TF+S  F T I NILS+NPQ+ + DI+   SR+ VPF C+C++G+F+ + F  ++ ++ 
Sbjct: 48  LTFMSNTFSTPIKNILSYNPQITNPDIIQSQSRVNVPFSCSCVDGKFMGHQFDVQVKTNT 107

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY ++   Y +NLTTV+ L+ +N +  NN+P VN+ + V+VNCSCG+  VSKDYGLF+TY
Sbjct: 108 TYPRITRLYCSNLTTVEKLQESNSYDPNNVP-VNSIVKVIVNCSCGNSHVSKDYGLFITY 166

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMSRDGTD 178
           P+  GENL T+AN   L  +LL+ YN  ++FS  SGLVFIP KDQ+G YP L+ S     
Sbjct: 167 PLRPGENLVTLANDFSLPQKLLEDYNPEANFSSGSGLVFIPGKDQNGTYPQLRTSTSSKG 226

Query: 179 F 179
           F
Sbjct: 227 F 227

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557941|ref|XP_003547268.1| PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 121/178 (67%), Gaps = 4/178 (2%)

Query: 1   MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
           +T+IS +F      IL +NP V + +++   +RI VPF C+C+NG FL + FSY I   +
Sbjct: 52  LTYISNLFGRPTSEILKYNPSVKNPNVILSQTRINVPFSCDCLNGAFLGHTFSYAIQHGN 111

Query: 61  TYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTY 120
           TY  VAE  ++NLTT DW+   N +P N IPD N  INV VNCSCG++ VSKDYGLF+TY
Sbjct: 112 TYKIVAEVDFSNLTTEDWVGRVNSYPPNQIPD-NVNINVTVNCSCGNRHVSKDYGLFMTY 170

Query: 121 PIELGENLSTIANMSGLSPELLQSYNRGSDFSS--GLVFIPEKDQSGKYPPLQMSRDG 176
           P+ +G++L  +A  +G+  ELL  YN  +DF +  GLVF+P KD++G +PP+Q+ R G
Sbjct: 171 PLRVGDSLQRVAAEAGVPAELLLRYNPTADFGAGNGLVFVPAKDENGNFPPMQL-RSG 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2089860	617	CERK1 "chitin elicitor recepto	0.877	0.267	0.502	9.3e-43
UNIPROTKB|D7UPN3	605	CERK1 "Chitin elicitor recepto	0.904	0.280	0.410	6.2e-29
UNIPROTKB|Q8H8C7	356	CEBIP "Chitin elicitor-binding	0.728	0.384	0.285	4.4e-08
TAIR|locus:2204720	423	LYM3 "lysin-motif (LysM) domai	0.856	0.380	0.244	1.3e-07
TAIR|locus:2201143	416	LYP2 "LysM-containing receptor	0.856	0.387	0.25	2.9e-07
TAIR|locus:2049029	612	LYK4 "LysM-containing receptor	0.808	0.248	0.25	1e-05
TAIR|locus:2050987	664	LYK5 "LysM-containing receptor	0.723	0.204	0.233	2.1e-05
TAIR|locus:2827686	350	LYP1 "LysM-containing receptor	0.590	0.317	0.280	2.7e-05
TAIR|locus:2082359	654	LYK2 "LysM-containing receptor	0.781	0.224	0.240	6.9e-05

TAIR|locus:2089860 CERK1 "chitin elicitor receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 85/169 (50%), Positives = 122/169 (72%)

Query:    11 SIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYY 70
             + D IL +N  + DKD + +GSR+ VPF C C  G FL +NFSY +   DTY +VA + Y
Sbjct:    62 NFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNY 121

Query:    71 ANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLST 130
             ANLTT++ L+A N FP  NIP ++ T+NV+VNCSCGD+ VSKD+GLF+TYP+   ++LS+
Sbjct:   122 ANLTTMESLQARNPFPATNIP-LSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSS 180

Query:   131 IANMSGLSPELLQSYNRGSDFSSG--LVFIPEKDQSGKYPPLQMSR-DG 176
             IA  SG+S ++LQ YN G +F+SG  +V++P +D +G +PP + S+ DG
Sbjct:   181 IARSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKSSKQDG 229

GO:0005576 "extracellular region" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=IMP;IDA

GO:0032491 "detection of molecule of fungal origin" evidence=IEP;IMP

GO:0035556 "intracellular signal transduction" evidence=RCA;IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0010200 "response to chitin" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0002752 "cell surface pattern recognition receptor signaling pathway" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0008061 "chitin binding" evidence=IDA

GO:2001080 "chitosan binding" evidence=IDA

GO:0032499 "detection of peptidoglycan" evidence=IMP

GO:0045087 "innate immune response" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP

GO:0071323 "cellular response to chitin" evidence=IEP

UNIPROTKB|D7UPN3 CERK1 "Chitin elicitor receptor kinase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 328 (120.5 bits), Expect = 6.2e-29, P = 6.2e-29
 Identities = 78/190 (41%), Positives = 105/190 (55%)

Query:     1 MTFISEMFDTS---IDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN------GQFLANN 51
             +TFI+ +F         +L +NP + + D +  G R+ VPF C+C+         FLA  
Sbjct:    45 LTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLVPFPCSCLGLPAAPASTFLAGA 104

Query:    52 FSYKII----SHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGD 107
               Y +       DTY  VA  Y A+LTT  WL A N +P   IP  +  +NV +NCSCGD
Sbjct:   105 IPYPLPLPRGGGDTYDAVAANY-ADLTTAAWLEATNAYPPGRIPGGDGRVNVTINCSCGD 163

Query:   108 KKVSKDYGLFLTYPIELGENLSTIANMSGLS-P---ELLQSYNRGSDFSSG--LVFIPEK 161
             ++VS  YGLFLTYP+  GE L ++A   G S P   EL++ YN G    SG  +VFIP K
Sbjct:   164 ERVSPRYGLFLTYPLWDGETLESVAAQYGFSSPAEMELIRRYNPGMGGVSGKGIVFIPVK 223

Query:   162 DQSGKYPPLQ 171
             D +G Y PL+
Sbjct:   224 DPNGSYHPLK 233

GO:0005515 "protein binding" evidence=IPI

GO:0008061 "chitin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

UNIPROTKB|Q8H8C7 CEBIP "Chitin elicitor-binding protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 136 (52.9 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 42/147 (28%), Positives = 70/147 (47%)

Query:    10 TSIDNILSFNPQVPDKDILSV----GSRIKVPFKCNCINGQFLANNFS--YKIISHDTYA 63
             T++ ++L  N  +PD  + S      S +K+PF+C C NG    ++    Y +   D   
Sbjct:    65 TTLPDLLGANG-LPDGTLSSAPVAANSTVKIPFRCRC-NGDVGQSDRLPIYVVQPQDGLD 122

Query:    64 KVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIE 123
              +A   +    T   + A N  PD N  +V+ T+ + + CSC DK+   +  + L Y + 
Sbjct:   123 AIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSC-DKEEGSNV-MHLAYSVG 180

Query:   124 LGENLSTIANMSGLSPELLQSYNRGSD 150
              GEN S IA   G++   L + N+  D
Sbjct:   181 KGENTSAIAAKYGVTESTLLTRNKIDD 207

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

TAIR|locus:2204720 LYM3 "lysin-motif (LysM) domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 41/168 (24%), Positives = 82/168 (48%)

Query:     4 ISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYA 63
             +S +   SID  +S+ P V +  +L     +K+P  C+C++G   + +  YK  + DT  
Sbjct:    63 VSMLLSNSID--ISY-PDV-ENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLG 118

Query:    64 KVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIE 123
              +A++ Y  L + + ++  N   D ++ DV T + + + C+C +        L+L+Y + 
Sbjct:   119 SIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVR 178

Query:   124 LGENLSTIANMSGLSPELLQSYNR-GS-DFSSG-LVFIPEKDQSGKYP 168
               + ++ IA     S   L + N  G+ D + G ++ +P    S  +P
Sbjct:   179 GIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLLACSSNFP 226

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0042834 "peptidoglycan binding" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2201143 LYP2 "LysM-containing receptor protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 42/168 (25%), Positives = 84/168 (50%)

Query:     4 ISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYA 63
             IS +   +ID  +S+ P V +  IL     +K+P  C+C++G   + +  YK    D   
Sbjct:    66 ISILLANAID--ISY-PDV-ENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLG 121

Query:    64 KVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIE 123
              +A++ Y  L + + ++  N   D ++ DV T++ + + C+C +   +    ++L+Y ++
Sbjct:   122 SIADSVYGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVK 181

Query:   124 LGENLSTIANMSGLSPELLQSYNR-GS-DFSSG-LVFIPEKDQSGKYP 168
               + L  IA     +   L + N  G+ D SSG ++ +P    + K+P
Sbjct:   182 EIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFP 229

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0042834 "peptidoglycan binding" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2049029 LYK4 "LysM-containing receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 40/160 (25%), Positives = 73/160 (45%)

Query:     1 MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
             +T IS +F      + S N   P     S G ++ +P  C+C  G    +N +Y I  +D
Sbjct:    70 VTSISSLFSVDPSLVSSLNDASPSTSFPS-GQQVIIPLTCSC-TGDDSQSNITYTIQPND 127

Query:    61 TYAKVAETYYANLTTVDWL-RANNIFPDNNIPDVNTTINVVVNCSCGD-KKVSKDYGLFL 118
             +Y  +A      L+T   L + NN+   +  P +   I V + C+C   K++++D   +L
Sbjct:   128 SYFAIANDTLQGLSTCQALAKQNNVSSQSLFPGMR--IVVPIRCACPTAKQINEDGVKYL 185

Query:   119 -TYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVF 157
              +Y +   + ++ I++  G+        N  S F +  VF
Sbjct:   186 MSYTVVFEDTIAIISDRFGVETSKTLKANEMS-FENSEVF 224

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008061 "chitin binding" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP

GO:0071323 "cellular response to chitin" evidence=IEP

TAIR|locus:2050987 LYK5 "LysM-containing receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 36/154 (23%), Positives = 77/154 (50%)

Query:    11 SIDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN--GQFLANNFSYKIISH---DTYAKV 65
             SI+N+ +   ++P +++      + +P  C+C +  G F  +N +Y +  +   +TY  V
Sbjct:    89 SINNLPTATTRIPTREL------VVIPANCSCSSSSGGFYQHNATYNLSGNRGDETYFSV 142

Query:    66 AETYYANLTTVDWLRANNIFPDNNI-PDVNTTINVVVNCSCGD-KKVSKDYGLFLTYPIE 123
             A   Y  L+T   + + N + +  + P +N  + V + C+C   K+ +  +   LTY + 
Sbjct:   143 ANDTYQALSTCQAMMSQNRYGERQLTPGLN--LLVPLRCACPTAKQTTAGFKYLLTYLVA 200

Query:   124 LGENLSTIANMSGLSPELLQSYNRGSDFSSGLVF 157
             +G+++S IA M   +   +     G++ +S  +F
Sbjct:   201 MGDSISGIAEMFNSTSAAI---TEGNELTSDNIF 231

GO:0005576 "extracellular region" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0008061 "chitin binding" evidence=IDA

GO:0071323 "cellular response to chitin" evidence=IEP

TAIR|locus:2827686 LYP1 "LysM-containing receptor protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query:    34 IKVPFKCNCINGQFLAN-NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPD 92
             ++VP  C+C NG  ++N +  Y I   D  + VA   +  L T + +   N  PD N  +
Sbjct:    89 VRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIE 148

Query:    93 VNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYN 146
             +     + + CSC DK   +D  +   + ++LG +L  IA   G     L   N
Sbjct:   149 IGQKFWIPLPCSC-DKLNGEDV-VHYAHVVKLGSSLGEIAAQFGTDNTTLAQLN 200

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0008061 "chitin binding" evidence=IDA

TAIR|locus:2082359 LYK2 "LysM-containing receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 38/158 (24%), Positives = 72/158 (45%)

Query:    24 DKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANN 83
             D + +  G  + +P +C C NG     +     +  DT+  V+++    LTT   +R  N
Sbjct:    84 DDEYVPKGQLLLIPIECRC-NGSIYEASLIKNCVKGDTFRSVSQSLQG-LTTCLSIREKN 141

Query:    84 I-FPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELL 142
                 ++ + D N  + + + CSC  + VS +    +TYP+ + +++S++A     + + +
Sbjct:   142 PHISEDKLGD-NIKLRLAIRCSCPQEGVS-NASFLVTYPVGVRDSVSSLAVRFNTTEDAI 199

Query:   143 QSYNRGSD---FSSGLVFI---PEKDQSGKYPPLQMSR 174
              S N  S        L+ +   PEK  S K  P +  R
Sbjct:   200 VSANNKSGVVPLKPALIPLDHKPEKQGSRKRNPSKKKR 237


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 22  0.45    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.06u 0.18s 18.24t   Elapsed:  00:00:01
  Total cpu time:  18.06u 0.18s 18.24t   Elapsed:  00:00:01
  Start:  Fri May 10 16:14:17 2013   End:  Fri May 10 16:14:18 2013

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PRK06347	592	autolysin; Reviewed	99.96
PRK06347	592	autolysin; Reviewed	99.95
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	99.94
PRK13914	481	invasion associated secreted endopeptidase; Provis	99.65
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	99.64
PRK13914	481	invasion associated secreted endopeptidase; Provis	99.31
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	99.29
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	99.27
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	99.26
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	99.23
PRK14125	103	cell division suppressor protein YneA; Provisional	99.05
PRK14125	103	cell division suppressor protein YneA; Provisional	98.98
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	98.9
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	98.87
TIGR02907	338	spore_VI_D stage VI sporulation protein D. SpoVID,	98.79
COG3858	423	Predicted glycosyl hydrolase [General function pre	98.74
TIGR02907	338	spore_VI_D stage VI sporulation protein D. SpoVID,	98.74
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	98.71
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	98.7
PRK10871	319	nlpD lipoprotein NlpD; Provisional	98.67
PRK10871	319	nlpD lipoprotein NlpD; Provisional	98.63
smart00257	44	LysM Lysin motif.	98.48
PRK11198	147	LysM domain/BON superfamily protein; Provisional	98.42
smart00257	44	LysM Lysin motif.	98.33
COG3858	423	Predicted glycosyl hydrolase [General function pre	98.27
PRK11198	147	LysM domain/BON superfamily protein; Provisional	98.17
PRK10190	310	L,D-transpeptidase; Provisional	97.48
COG1652	269	XkdP Uncharacterized protein containing LysM domai	97.47
PRK10260	306	L,D-transpeptidase; Provisional	97.46
PF04225	85	OapA: Opacity-associated protein A LysM-like domai	96.87
TIGR03505	74	FimV_core FimV N-terminal domain. This region is f	96.84
TIGR03505	74	FimV_core FimV N-terminal domain. This region is f	96.68
PF05489	60	Phage_tail_X: Phage Tail Protein X; InterPro: IPR0	96.48
PRK10260	306	L,D-transpeptidase; Provisional	96.42
PF04225	85	OapA: Opacity-associated protein A LysM-like domai	96.41
PRK10190	310	L,D-transpeptidase; Provisional	96.36
COG1652	269	XkdP Uncharacterized protein containing LysM domai	96.07
PF05489	60	Phage_tail_X: Phage Tail Protein X; InterPro: IPR0	95.34
PRK11649	439	putative peptidase; Provisional	94.16
COG3061	242	OapA Cell envelope opacity-associated protein A [C	94.09
COG3170	755	FimV Tfp pilus assembly protein FimV [Cell motilit	93.79
COG3061	242	OapA Cell envelope opacity-associated protein A [C	91.5
PRK11649	439	putative peptidase; Provisional	90.87
COG3170	755	FimV Tfp pilus assembly protein FimV [Cell motilit	90.15
PF13518	52	HTH_28: Helix-turn-helix domain	87.12
COG5004	70	P2-like prophage tail protein X [General function	82.76
COG4784	479	Putative Zn-dependent protease [General function p	82.62
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	81.88
PF01527	76	HTH_Tnp_1: Transposase; InterPro: IPR002514 Transp	81.38

>PRK06347 autolysin; Reviewed

Probab=99.96  E-value=1.6e-28  Score=218.08  Aligned_cols=180  Identities=15%  Similarity=0.211  Sum_probs=137.5

Q ss_pred             ChhHHHHcCCCHHHHHhcCCCCCCCCCCCCCCEEEEcCccccCC--------C--------ccccCceEEEecCCCcHHH
Q 047095            1 MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN--------G--------QFLANNFSYKIISHDTYAK   64 (188)
Q Consensus         1 L~~IA~~~gvs~~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~--------~--------~~~~~~~~Y~V~~GDTL~~   64 (188)
                      |+.||++|||++++|+++| ++.. +.|.+||.|+||.......        .        ........|+|++||||+.
T Consensus       341 L~~IA~rygvSv~eL~~~N-~l~~-d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ytVk~GDTL~s  418 (592)
T PRK06347        341 LWRIANNHKVTVANLKAWN-NLKS-DFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPSTGTSTNAKVYTVVKGDSLWR  418 (592)
T ss_pred             HHHHHHHhCCCHHHHHHHh-CCCc-cccccCcEEEEeccccccccccccccccccccccccccccCceeEEecCCCCHHH
Confidence            6899999999999999999 6864 7899999999997421100        0        0112356899999999999


Q ss_pred             HHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCC---c---------ccCCccceEEEEeecCCcHHHHH
Q 047095           65 VAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDK---K---------VSKDYGLFLTYPIELGENLSTIA  132 (188)
Q Consensus        65 IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~---~---------~~~~~~~~~~y~V~~GDTl~~IA  132 (188)
                      ||+ +|++  ++++|+++|++..+.+.+ ||.|.||........   .         ..........|+|++|||||+||
T Consensus       419 IA~-kygV--Sv~~L~~~N~l~s~~L~~-Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~~~~~YtVk~GDTL~sIA  494 (592)
T PRK06347        419 IAN-NNKV--TIANLKSWNNLKSDFIYP-GQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNTNAKVYTVAKGDSLWRIA  494 (592)
T ss_pred             HHH-HhCC--CHHHHHHHhCCCcceecc-CcEEEEecCCcccccccccccccccccccccccccceeeeecCCCCHHHHH
Confidence            997 8985  999999999987778999 999999975321000   0         00011224679999999999999


Q ss_pred             HHhCCCHHHHHhhcCCCC--CC-CCEEEEcCCCCCCC--------------CCCcccCCCCCcHHHhhhhh
Q 047095          133 NMSGLSPELLQSYNRGSD--FS-SGLVFIPEKDQSGK--------------YPPLQMSRDGTDFFECASLL  186 (188)
Q Consensus       133 ~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~~~~~~~--------------~~p~~~~~~~~~~~~~~~~~  186 (188)
                      ++||+++++|++||++.+  +. ||.|.||.......              ..-.+.++.|||+|.||+-.
T Consensus       495 kkygVSv~~L~~~N~l~s~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDTL~sIA~Ky  565 (592)
T PRK06347        495 NNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAISRQY  565 (592)
T ss_pred             HHHCCCHHHHHHhcCCCcccccCCcEEEEecCcccccccccCCccCCccCccceeeecCCCCcHHHHHHHh
Confidence            999999999999999865  55 99999998643211              01235678999999999853

>PRK06347 autolysin; Reviewed

Probab=99.95  E-value=3.9e-27  Score=209.31  Aligned_cols=153  Identities=16%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             ChhHHHHcCCCHHHHHhcCCCCCCCCCCCCCCEEEEcCccccCC----------C-----ccccCceEEEecCCCcHHHH
Q 047095            1 MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN----------G-----QFLANNFSYKIISHDTYAKV   65 (188)
Q Consensus         1 L~~IA~~~gvs~~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~----------~-----~~~~~~~~Y~V~~GDTL~~I   65 (188)
                      |+.||++|||++++|+++| .+.. +.|.+||.|+||.......          .     ........|+|++|||||+|
T Consensus       416 L~sIA~kygVSv~~L~~~N-~l~s-~~L~~Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~~~~~YtVk~GDTL~sI  493 (592)
T PRK06347        416 LWRIANNNKVTIANLKSWN-NLKS-DFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNTNAKVYTVAKGDSLWRI  493 (592)
T ss_pred             HHHHHHHhCCCHHHHHHHh-CCCc-ceeccCcEEEEecCCcccccccccccccccccccccccccceeeeecCCCCHHHH
Confidence            5789999999999999999 6864 6799999999996432100          0     00112457999999999999


Q ss_pred             HHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCc------ccCCccceEEEEeecCCcHHHHHHHhCCCH
Q 047095           66 AETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKK------VSKDYGLFLTYPIELGENLSTIANMSGLSP  139 (188)
Q Consensus        66 A~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~------~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~  139 (188)
                      |+ +|+.  ++++|++||++..+.|++ ||.|.||.........      ..........|+|++|||||+||++||+++
T Consensus       494 Ak-kygV--Sv~~L~~~N~l~s~~L~~-GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDTL~sIA~KygvSv  569 (592)
T PRK06347        494 AN-NNKV--TIANLKSWNNLKSDFIYP-GQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAISRQYKTTV  569 (592)
T ss_pred             HH-HHCC--CHHHHHHhcCCCcccccC-CcEEEEecCcccccccccCCccCCccCccceeeecCCCCcHHHHHHHhCCCH
Confidence            97 8985  999999999997788999 9999999754321100      000112246899999999999999999999


Q ss_pred             HHHHhhcCCCC--CC-CCEEEEc
Q 047095          140 ELLQSYNRGSD--FS-SGLVFIP  159 (188)
Q Consensus       140 ~~l~~~N~~~~--~~-g~~l~iP  159 (188)
                      ++|++||++..  ++ ||+|.|+
T Consensus       570 ~~L~~~N~L~~~~L~~GQ~L~I~  592 (592)
T PRK06347        570 DNIKAWNKLTSNMIHVGQKLTIK  592 (592)
T ss_pred             HHHHHhcCCCcccCCCCCEEecC
Confidence            99999999875  55 9999885

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=99.94  E-value=6e-26  Score=197.59  Aligned_cols=156  Identities=21%  Similarity=0.231  Sum_probs=122.5

Q ss_pred             ChhHHHHcCCCHHHHHhcCCCCCCCCCCCCC-CEEEEcCccccC------C-------Cc-----cccCceEEEecCCCc
Q 047095            1 MTFISEMFDTSIDNILSFNPQVPDKDILSVG-SRIKVPFKCNCI------N-------GQ-----FLANNFSYKIISHDT   61 (188)
Q Consensus         1 L~~IA~~~gvs~~~l~~~Np~l~~~~~l~~G-q~L~IP~~~~~~------~-------~~-----~~~~~~~Y~V~~GDT   61 (188)
                      |..||+++||++++|+++||+++.....+.| +.|+||......      .       ..     .......|+|++|||
T Consensus       274 L~~iA~~~gvs~~eL~~LNP~~kr~~t~p~g~~~llvP~~~~~~f~~~l~~~~~~~~~p~~~~~~~~~~~~~y~Vk~GDT  353 (456)
T PRK10783        274 LAQAAEMAGMSLTKLKTFNAGYKRSTTAPSGPHYIMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRSYKVRSGDT  353 (456)
T ss_pred             HHHHHHHcCCCHHHHHHhCccccCCCcCCCCCeEEEecCchhhHHHHhhhhhhhhhcccccccccCcCCceEEEECCCCc
Confidence            5689999999999999999998764333345 788999864310      0       00     011356899999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHHHhCCCHHH
Q 047095           62 YAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPEL  141 (188)
Q Consensus        62 L~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~  141 (188)
                      |++||+ +|+.  ++++|.++|++..+.+.+ ||.|.||..+.+....   ......+|+|++|||||+||++|||++++
T Consensus       354 L~sIA~-r~gv--s~~~L~~~N~l~~~~L~~-Gq~L~Ip~~~~~~~~~---~~~~~~~Y~Vr~GDTL~sIA~kygVtv~~  426 (456)
T PRK10783        354 LSGIAS-RLNV--STKDLQQWNNLRGSKLKV-GQTLTIGAGSSAQRLA---NNSDSITYRVRKGDSLSSIAKRHGVNIKD  426 (456)
T ss_pred             HHHHHH-HHCc--CHHHHHHHcCCCcccCCC-CCEEEecCCccccccc---ccccceeEEeCCCCCHHHHHHHhCCCHHH
Confidence            999997 8985  999999999986678999 9999999876543211   11234689999999999999999999999


Q ss_pred             HHhhcCCCC--CC-CCEEEEcCCCC
Q 047095          142 LQSYNRGSD--FS-SGLVFIPEKDQ  163 (188)
Q Consensus       142 l~~~N~~~~--~~-g~~l~iP~~~~  163 (188)
                      |++||++..  ++ ||+|.|++...
T Consensus       427 L~~~N~l~~~~L~pGq~L~l~v~~~  451 (456)
T PRK10783        427 VMRWNSDTAKNLQPGDKLTLFVKNN  451 (456)
T ss_pred             HHHhcCCCCCcCCCCCEEEEecCCC
Confidence            999999764  55 99999887653

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=99.65  E-value=2.2e-15  Score=130.50  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCC-----------------CC-----
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSC-----------------GD-----  107 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~-----------------~~-----  107 (188)
                      ....|+|++|||||.||+ +|+.  ++++|+++|++.++.|.+ ||.|.||.....                 +.     
T Consensus        26 sa~tytVq~GDTLw~IA~-~ygv--tv~~I~~~N~l~~~~I~~-Gq~L~Ip~~~~~~~~~~~Vta~~LNVRsgps~s~~I  101 (481)
T PRK13914         26 SASTVVVEAGDTLWGIAQ-SKGT--TVDAIKKANNLTTDKIVP-GQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSI  101 (481)
T ss_pred             cCceEEECCCCCHHHHHH-HHCC--CHHHHHHHhCCCcccccC-CCEEEeCCCCcccccceeEecceEEEecCCCCCcce
Confidence            346799999999999997 8985  999999999998889999 999999843100                 00     


Q ss_pred             ---------------Cc-----------------------------ccC-------------------------------
Q 047095          108 ---------------KK-----------------------------VSK-------------------------------  112 (188)
Q Consensus       108 ---------------~~-----------------------------~~~-------------------------------  112 (188)
                                     .+                             +.+                               
T Consensus       102 Igsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (481)
T PRK13914        102 ITSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDKVTSTPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATT  181 (481)
T ss_pred             eeeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCCCccCccccchhhhhccccccccchhcccchhccCCcccC
Confidence                           00                             000                               


Q ss_pred             -------------CccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcCCC
Q 047095          113 -------------DYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPEKD  162 (188)
Q Consensus       113 -------------~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~~~  162 (188)
                                   .......|+|++|||||+||++|++++++|++||++.+  +. |+.|.||...
T Consensus       182 ~~~~~~~~~~~~~~~~~a~tytVq~GDTL~sIAkrYgVtv~eI~~~N~l~s~~L~pGQ~L~Ip~sa  247 (481)
T PRK13914        182 PAPKVAETKETPVVDQNATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQTA  247 (481)
T ss_pred             CcccccccccCccccCCCeEEEECCCCCHHHHHHHHCCCHHHHHHhcCCCccccCCCCEEEecCCC
Confidence                         00012589999999999999999999999999999875  44 9999999764

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=99.64  E-value=1.3e-15  Score=133.08  Aligned_cols=97  Identities=12%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             ChhHHHHcCCCHHHHHhcCCCCCCCCCCCCCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCCCCCHHHHH
Q 047095            1 MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLR   80 (188)
Q Consensus         1 L~~IA~~~gvs~~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~   80 (188)
                      |+.||++||+++++|+++| .+.. +.|.+||.|.||..+.+...........|+|++||||++||+ +|++  ++++|+
T Consensus       354 L~sIA~r~gvs~~~L~~~N-~l~~-~~L~~Gq~L~Ip~~~~~~~~~~~~~~~~Y~Vr~GDTL~sIA~-kygV--tv~~L~  428 (456)
T PRK10783        354 LSGIASRLNVSTKDLQQWN-NLRG-SKLKVGQTLTIGAGSSAQRLANNSDSITYRVRKGDSLSSIAK-RHGV--NIKDVM  428 (456)
T ss_pred             HHHHHHHHCcCHHHHHHHc-CCCc-ccCCCCCEEEecCCcccccccccccceeEEeCCCCCHHHHHH-HhCC--CHHHHH
Confidence            5789999999999999999 5765 789999999999876553222222456899999999999997 8985  999999


Q ss_pred             HhCCCCCCCccCCCcEEEEcccC
Q 047095           81 ANNIFPDNNIPDVNTTINVVVNC  103 (188)
Q Consensus        81 ~~N~l~~~~i~~~Gq~L~IP~~~  103 (188)
                      +||++..+.|++ ||+|.|+...
T Consensus       429 ~~N~l~~~~L~p-Gq~L~l~v~~  450 (456)
T PRK10783        429 RWNSDTAKNLQP-GDKLTLFVKN  450 (456)
T ss_pred             HhcCCCCCcCCC-CCEEEEecCC
Confidence            999975458999 9999998753

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=99.31  E-value=1.2e-11  Score=107.57  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEccc
Q 047095           51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVN  102 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~  102 (188)
                      ...|+|++|||||.||+ +|+.  ++++|.++|++..+.|++ ||.|.||..
T Consensus       199 a~tytVq~GDTL~sIAk-rYgV--tv~eI~~~N~l~s~~L~p-GQ~L~Ip~s  246 (481)
T PRK13914        199 ATTHAVKSGDTIWALSV-KYGV--SVQDIMSWNNLSSSSIYV-GQKLAIKQT  246 (481)
T ss_pred             CeEEEECCCCCHHHHHH-HHCC--CHHHHHHhcCCCccccCC-CCEEEecCC
Confidence            46899999999999997 8985  999999999997778999 999999975

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=99.29  E-value=3e-12  Score=76.44  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             EEeecCCcHHHHHHHhCCCHHHHHhhcCCC-C--CC-CCEEEEc
Q 047095          120 YPIELGENLSTIANMSGLSPELLQSYNRGS-D--FS-SGLVFIP  159 (188)
Q Consensus       120 y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~-~--~~-g~~l~iP  159 (188)
                      |+|++|||+|+||++||++.++|+++|+.. .  +. |+.|.||
T Consensus         1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~l~~G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSDNLQPGQKLCIP   44 (44)
T ss_dssp             EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGGCGGTTEEEEEC
T ss_pred             CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCcccCCCCCEEEeC
Confidence            899999999999999999999999999443 2  44 9999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=2.4e-11  Score=88.42  Aligned_cols=92  Identities=22%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             HHHHHcCCCCCHHHHHHhCCCC--CCCccCCCcEEEEcccCCCCCC--cc--cCCc-----------cceEEEEeecCCc
Q 047095           65 VAETYYANLTTVDWLRANNIFP--DNNIPDVNTTINVVVNCSCGDK--KV--SKDY-----------GLFLTYPIELGEN  127 (188)
Q Consensus        65 IA~~~y~~l~s~~~L~~~N~l~--~~~i~~~Gq~L~IP~~~~~~~~--~~--~~~~-----------~~~~~y~V~~GDT  127 (188)
                      ||. +|+.  ++++|.++|.+.  .+.+.+ ||+|.+|........  ..  ....           ....+|+|++|||
T Consensus         1 ia~-~~~~--~v~~l~~~n~~~~~s~~i~~-gq~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~gdt   76 (124)
T COG1388           1 IAS-KYGV--SVKALKKANALTGKSDAIKP-GQVLKIPGDISSTVNAGQTLSSLSNKVSDSSSASKAPPVVTYTVKKGDT   76 (124)
T ss_pred             Ccc-cccc--cHHHHHHHhcccCCCCcccc-CceEEccCCcccccccccccccccceeeccccccccCCCceEEEecCCC
Confidence            454 6775  899999999987  788999 999999964221111  10  0000           1135799999999


Q ss_pred             HHHHHHHhCCCHHHHHhhcCCCCCC---CCEEEEcC
Q 047095          128 LSTIANMSGLSPELLQSYNRGSDFS---SGLVFIPE  160 (188)
Q Consensus       128 l~~IA~~~~vs~~~l~~~N~~~~~~---g~~l~iP~  160 (188)
                      |+.||++|++++.+|+++|++.+..   ||.|.+|.
T Consensus        77 L~~Ia~~~~~tv~~l~~~n~l~~~~i~~gq~l~~~~  112 (124)
T COG1388          77 LSKIARKYGVTVAELKQLNNLSSDKIKVGQKLKLPV  112 (124)
T ss_pred             HHHHHHHhCCCHHHHHHHhccCCCceecCcEEEEec
Confidence            9999999999999999999998733   99999987

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=2.5e-11  Score=88.34  Aligned_cols=94  Identities=22%  Similarity=0.338  Sum_probs=74.9

Q ss_pred             HHHHcCCCHHHHHhcCCCCCC-CCCCCCCCEEEEcCcccc--CCCc----cc------------cCceEEEecCCCcHHH
Q 047095            4 ISEMFDTSIDNILSFNPQVPD-KDILSVGSRIKVPFKCNC--INGQ----FL------------ANNFSYKIISHDTYAK   64 (188)
Q Consensus         4 IA~~~gvs~~~l~~~Np~l~~-~~~l~~Gq~L~IP~~~~~--~~~~----~~------------~~~~~Y~V~~GDTL~~   64 (188)
                      ||.+|++++++|+++| .+.. .+.+.+||.|.+|.....  ..+.    ..            .....|+|++||||+.
T Consensus         1 ia~~~~~~v~~l~~~n-~~~~~s~~i~~gq~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~gdtL~~   79 (124)
T COG1388           1 IASKYGVSVKALKKAN-ALTGKSDAIKPGQVLKIPGDISSTVNAGQTLSSLSNKVSDSSSASKAPPVVTYTVKKGDTLSK   79 (124)
T ss_pred             CcccccccHHHHHHHh-cccCCCCccccCceEEccCCcccccccccccccccceeeccccccccCCCceEEEecCCCHHH
Confidence            6889999999999999 7763 578899999999963111  1110    00            1135799999999999


Q ss_pred             HHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEccc
Q 047095           65 VAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVN  102 (188)
Q Consensus        65 IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~  102 (188)
                      ||+ +|+.  ++.+|.++|.+..+.+++ ||.|.+|..
T Consensus        80 Ia~-~~~~--tv~~l~~~n~l~~~~i~~-gq~l~~~~~  113 (124)
T COG1388          80 IAR-KYGV--TVAELKQLNNLSSDKIKV-GQKLKLPVS  113 (124)
T ss_pred             HHH-HhCC--CHHHHHHHhccCCCceec-CcEEEEecc
Confidence            997 7885  999999999998779999 999999874

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=99.23  E-value=1.2e-11  Score=73.74  Aligned_cols=43  Identities=23%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             EEecCCCcHHHHHHHHcCCCCCHHHHHHhC-CCCCCCccCCCcEEEEc
Q 047095           54 YKIISHDTYAKVAETYYANLTTVDWLRANN-IFPDNNIPDVNTTINVV  100 (188)
Q Consensus        54 Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N-~l~~~~i~~~Gq~L~IP  100 (188)
                      |+|++|||+++||+ +|+.  +.++|+++| .+..+.|.+ ||+|.||
T Consensus         1 y~V~~gDtl~~IA~-~~~~--~~~~l~~~N~~~~~~~l~~-G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPGDTLWSIAK-RYGI--SVDELMELNPNIDSDNLQP-GQKLCIP   44 (44)
T ss_dssp             EEE-TT--HHHHHH-HTTS---HHHHHHHCCTTHGGCGGT-TEEEEEC
T ss_pred             CEECcCCcHHHHHh-hhhh--hHhHHHHhcCCCCcccCCC-CCEEEeC
Confidence            89999999999997 8975  999999999 565555999 9999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=99.05  E-value=5.9e-10  Score=78.62  Aligned_cols=53  Identities=21%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCC--CC----HHHHHHhCCCCCCCccCCCcEEEEcccCC
Q 047095           50 NNFSYKIISHDTYAKVAETYYANL--TT----VDWLRANNIFPDNNIPDVNTTINVVVNCS  104 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l--~s----~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~  104 (188)
                      .+..|+|++|||||+||+ +|+.-  ++    +++|++.|.+.++.|++ ||.|.||...+
T Consensus        35 ~~~~~tV~~GDTLW~IA~-~y~~~~~l~~~~~v~~I~~~N~l~~~~I~~-Gq~L~IP~~~~   93 (103)
T PRK14125         35 QYVEITVQEGDTLWALAD-QYAGKHHMAKNEFIEWVEDVNNLPSGHIKA-GDKLVIPVLKS   93 (103)
T ss_pred             CcEEEEECCCCCHHHHHH-HhCCCcCCCHHHHHHHHHHhcCCCCCcCCC-CCEEEEecCCC
Confidence            567899999999999997 78741  01    57788899998778999 99999997643

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=98.98  E-value=1.5e-09  Score=76.58  Aligned_cols=48  Identities=15%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             eEEEEeecCCcHHHHHHHhCCC--------HHHHHhhcCCCC--CC-CCEEEEcCCCCC
Q 047095          117 FLTYPIELGENLSTIANMSGLS--------PELLQSYNRGSD--FS-SGLVFIPEKDQS  164 (188)
Q Consensus       117 ~~~y~V~~GDTl~~IA~~~~vs--------~~~l~~~N~~~~--~~-g~~l~iP~~~~~  164 (188)
                      ..+|+|++|||||+||++|+.+        +++|++.|++.+  +. |+.|.||.....
T Consensus        36 ~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~~I~~Gq~L~IP~~~~~   94 (103)
T PRK14125         36 YVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSGHIKAGDKLVIPVLKSK   94 (103)
T ss_pred             cEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCCcCCCCCEEEEecCCCC
Confidence            4789999999999999999864        577788898765  45 999999987654

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=98.90  E-value=2.1e-09  Score=63.47  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             eecCCcHHHHHHHhCCCHHHHHhhcCCC-C---CC-CCEEEEcC
Q 047095          122 IELGENLSTIANMSGLSPELLQSYNRGS-D---FS-SGLVFIPE  160 (188)
Q Consensus       122 V~~GDTl~~IA~~~~vs~~~l~~~N~~~-~---~~-g~~l~iP~  160 (188)
                      |++|||||+||++|+++.++|.++|+.. +   +. |++|+||.
T Consensus         1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip~   44 (44)
T TIGR02899         1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIPS   44 (44)
T ss_pred             CCCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecCC
Confidence            6889999999999999999999999843 2   33 99999983

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=98.87  E-value=5.6e-09  Score=61.06  Aligned_cols=41  Identities=39%  Similarity=0.502  Sum_probs=36.8

Q ss_pred             EEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEc
Q 047095          119 TYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIP  159 (188)
Q Consensus       119 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP  159 (188)
                      .|+|++|||+|+||++|+++..+|.++|+..+   +. |+.|.||
T Consensus         2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~~~~~~~~~g~~l~ip   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQRYGISVEELLKLNGLSDPDNLQVGQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEecC
Confidence            59999999999999999999999999999843   44 9998887

This domain may have a general peptidoglycan binding function.

>TIGR02907 spore_VI_D stage VI sporulation protein D

Probab=98.79  E-value=8.6e-09  Score=85.58  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=40.3

Q ss_pred             cceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEc
Q 047095          115 GLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIP  159 (188)
Q Consensus       115 ~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP  159 (188)
                      ..+..|+|++|||||+||++||++++.|+++|++..  +. |++|+||
T Consensus       291 ~~~~~YiVq~GDTL~sIAkRYGVSV~~L~r~N~L~~~~L~~GQ~L~IP  338 (338)
T TIGR02907       291 TKLRMCIVQEGDTIETIAERYEISVSQLIRHNQLEDFEVNEGQILYIP  338 (338)
T ss_pred             cccEEEEECCCCCHHHHHHHHCcCHHHHHHHhCCCccccCCCCEEEeC
Confidence            345789999999999999999999999999998765  44 9999998

SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=98.74  E-value=1.7e-08  Score=85.95  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             eEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHH
Q 047095           52 FSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTI  131 (188)
Q Consensus        52 ~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~I  131 (188)
                      ..|.|++||++..|++ +|..  +...|...|....+.+.. ||.+.||..              ...|.|++|||+++|
T Consensus         2 ~i~~~~pg~~~~~i~~-~~~~--~~~~i~~~~~~~~d~~~~-~q~~~v~~~--------------~~~y~~~~~d~~~Si   63 (423)
T COG3858           2 SIHLVGPGDSRLIIAV-YFPY--TNNRIVNGNDYTNDDLVD-GQTFVVPPS--------------GHFYDVGPGDTLTSI   63 (423)
T ss_pred             EEEEccCCceeeeehh-hccc--cccccccccccccccccC-ceeEEECCc--------------ceEEEecCCcchhhh
Confidence            3689999999999997 8986  777886666654577888 999999963              157999999999999


Q ss_pred             HHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCCCCC
Q 047095          132 ANMSGLSPELLQSYNRGSD---FS-SGLVFIPEKDQS  164 (188)
Q Consensus       132 A~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~~~~  164 (188)
                      |++|+++++.+...|....   +. |-.+.+|-....
T Consensus        64 a~~~~vt~~~~~~m~~~~~~~~l~~~~~l~~P~~~~~  100 (423)
T COG3858          64 ARTVGVTQDSAAIMNFVICPGYLQYGLNLYIPSARKT  100 (423)
T ss_pred             hhhhcCCHHHHHhhcccccccceeeeeEEeccCCCCC
Confidence            9999999999999998754   33 778888876544

>TIGR02907 spore_VI_D stage VI sporulation protein D

Probab=98.74  E-value=1.8e-08  Score=83.69  Aligned_cols=49  Identities=18%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             ccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEc
Q 047095           48 LANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVV  100 (188)
Q Consensus        48 ~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP  100 (188)
                      +..+..|+|++|||||+||+ +|++  +++.|+++|++.++.|.+ ||.|.||
T Consensus       290 ~~~~~~YiVq~GDTL~sIAk-RYGV--SV~~L~r~N~L~~~~L~~-GQ~L~IP  338 (338)
T TIGR02907       290 FTKLRMCIVQEGDTIETIAE-RYEI--SVSQLIRHNQLEDFEVNE-GQILYIP  338 (338)
T ss_pred             ccccEEEEECCCCCHHHHHH-HHCc--CHHHHHHHhCCCccccCC-CCEEEeC
Confidence            34678999999999999997 8985  999999999988788999 9999998

SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=98.71  E-value=2.3e-08  Score=58.90  Aligned_cols=42  Identities=26%  Similarity=0.213  Sum_probs=36.0

Q ss_pred             ecCCCcHHHHHHHHcCCCCCHHHHHHhCC-C-CCCCccCCCcEEEEcc
Q 047095           56 IISHDTYAKVAETYYANLTTVDWLRANNI-F-PDNNIPDVNTTINVVV  101 (188)
Q Consensus        56 V~~GDTL~~IA~~~y~~l~s~~~L~~~N~-l-~~~~i~~~Gq~L~IP~  101 (188)
                      |++|||||+||+ +|+.  ++++|.++|+ + ++..+.+ ||.|.||.
T Consensus         1 v~~gdtl~~IA~-~~~~--~~~~l~~~N~~~~~~~~~~~-g~~l~ip~   44 (44)
T TIGR02899         1 VQKGDTLWKIAK-KYGV--DFDELIQANPQLSNPNLIYP-GMKIKIPS   44 (44)
T ss_pred             CCCCCCHHHHHH-HHCc--CHHHHHHHhhcCCCCCCcCC-CCEEecCC
Confidence            578999999997 8985  8999999997 4 3567889 99999983

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=98.70  E-value=4.6e-08  Score=57.04  Aligned_cols=44  Identities=20%  Similarity=0.313  Sum_probs=39.2

Q ss_pred             EEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCC-CCCCccCCCcEEEEc
Q 047095           53 SYKIISHDTYAKVAETYYANLTTVDWLRANNIF-PDNNIPDVNTTINVV  100 (188)
Q Consensus        53 ~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l-~~~~i~~~Gq~L~IP  100 (188)
                      .|+|++|||+++||+ +|+.  +..+|.++|+. ....+.+ |+.|.||
T Consensus         2 ~~~v~~gdt~~~ia~-~~~~--~~~~~~~~N~~~~~~~~~~-g~~l~ip   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQ-RYGI--SVEELLKLNGLSDPDNLQV-GQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHH-HHCc--CHHHHHHHcCCCCccccCC-CCEEecC
Confidence            699999999999997 8875  89999999998 5677888 9999887

This domain may have a general peptidoglycan binding function.

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=98.67  E-value=2.6e-08  Score=83.16  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             EEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCC
Q 047095          118 LTYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIPEK  161 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~  161 (188)
                      .+|+|++|||||+||.+||+++.+|.+||++.+   +. ||+|.||..
T Consensus        61 ~~y~Vk~GDTL~~IA~~~g~~~~~La~~N~l~~p~~I~~GQ~L~i~~~  108 (319)
T PRK10871         61 STYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYSLNVGQTLQVGNA  108 (319)
T ss_pred             CceEECCCCHHHHHHHHHCcCHHHHHHhcCCCCCccccCCCEEEeCCC
Confidence            479999999999999999999999999999976   44 999999764

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=98.63  E-value=4.2e-08  Score=81.88  Aligned_cols=48  Identities=19%  Similarity=0.104  Sum_probs=42.9

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCC-CCCCccCCCcEEEEccc
Q 047095           51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIF-PDNNIPDVNTTINVVVN  102 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l-~~~~i~~~Gq~L~IP~~  102 (188)
                      ..+|+|++|||||.||. .|+.  ++.+|.++|++ ++..|++ ||.|.||..
T Consensus        60 ~~~y~Vk~GDTL~~IA~-~~g~--~~~~La~~N~l~~p~~I~~-GQ~L~i~~~  108 (319)
T PRK10871         60 GSTYTVKKGDTLFYIAW-ITGN--DFRDLAQRNNIQAPYSLNV-GQTLQVGNA  108 (319)
T ss_pred             CCceEECCCCHHHHHHH-HHCc--CHHHHHHhcCCCCCccccC-CCEEEeCCC
Confidence            35799999999999996 8985  99999999998 5788999 999999754

>smart00257 LysM Lysin motif

Probab=98.48  E-value=2.8e-07  Score=52.95  Aligned_cols=39  Identities=31%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             EEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEE
Q 047095          119 TYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVF  157 (188)
Q Consensus       119 ~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~  157 (188)
                      +|+|++|||+|+||++|+++.++|.++|+..+   +. |+.+.
T Consensus         1 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~~~~~~~~~g~~l~   43 (44)
T smart00257        1 TYTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLK   43 (44)
T ss_pred             CeEeCCCCCHHHHHHHhCCCHHHHHHHcCCCCccccCCCCEEe
Confidence            38999999999999999999999999999533   33 66654

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=98.42  E-value=4.7e-07  Score=67.95  Aligned_cols=50  Identities=18%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCC--C-CCCCccCCCcEEEEc
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNI--F-PDNNIPDVNTTINVV  100 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~--l-~~~~i~~~Gq~L~IP  100 (188)
                      ....|+|++|||||+||++.|+....+..|.++|+  + +++.|.+ ||.|.||
T Consensus        94 ~~~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~p-Gq~L~IP  146 (147)
T PRK11198         94 ESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYP-GQVLRIP  146 (147)
T ss_pred             CCeEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCc-CCEEecC
Confidence            34689999999999999843443235778999997  5 4678999 9999998

>smart00257 LysM Lysin motif

Probab=98.33  E-value=1.4e-06  Score=50.00  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=36.2

Q ss_pred             EEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCC-CCCCccCCCcEEEE
Q 047095           53 SYKIISHDTYAKVAETYYANLTTVDWLRANNIF-PDNNIPDVNTTINV   99 (188)
Q Consensus        53 ~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l-~~~~i~~~Gq~L~I   99 (188)
                      .|+|++|||+++||+ +|+.  +..+|.++|+. ....+.+ |+.|.|
T Consensus         1 ~~~v~~gdt~~~ia~-~~~~--~~~~~~~~N~~~~~~~~~~-g~~l~i   44 (44)
T smart00257        1 TYTVKKGDTLSSIAR-RYGI--SVSDLLELNNILDPDNLQV-GQKLKI   44 (44)
T ss_pred             CeEeCCCCCHHHHHH-HhCC--CHHHHHHHcCCCCccccCC-CCEEeC
Confidence            389999999999997 8886  88999999994 4567888 988764

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=98.27  E-value=1.2e-06  Score=74.80  Aligned_cols=85  Identities=19%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             hhHHHHcCCCHHHHHhcCCCCCCCCCCCCCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHH
Q 047095            2 TFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA   81 (188)
Q Consensus         2 ~~IA~~~gvs~~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~   81 (188)
                      ..|+++|+.+..+|...| .+.. +.+..||.+.||..           ...|.|++|||+++||+ ++++  +.+.+..
T Consensus        13 ~~i~~~~~~~~~~i~~~~-~~~~-d~~~~~q~~~v~~~-----------~~~y~~~~~d~~~Sia~-~~~v--t~~~~~~   76 (423)
T COG3858          13 LIIAVYFPYTNNRIVNGN-DYTN-DDLVDGQTFVVPPS-----------GHFYDVGPGDTLTSIAR-TVGV--TQDSAAI   76 (423)
T ss_pred             eeehhhcccccccccccc-cccc-ccccCceeEEECCc-----------ceEEEecCCcchhhhhh-hhcC--CHHHHHh
Confidence            468999999999998888 7877 88999999999974           35899999999999997 8885  9999999


Q ss_pred             hCCC-CCCCccCCCcEEEEcccC
Q 047095           82 NNIF-PDNNIPDVNTTINVVVNC  103 (188)
Q Consensus        82 ~N~l-~~~~i~~~Gq~L~IP~~~  103 (188)
                      +|.. .+..+.. |-.+.+|...
T Consensus        77 m~~~~~~~~l~~-~~~l~~P~~~   98 (423)
T COG3858          77 MNFVICPGYLQY-GLNLYIPSAR   98 (423)
T ss_pred             hcccccccceee-eeEEeccCCC
Confidence            9986 4667888 9999998643

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=98.17  E-value=2.9e-06  Score=63.69  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             EEEEeecCCcHHHHHHHhC---CCHHHHHhhcC--CCC---CC-CCEEEEc
Q 047095          118 LTYPIELGENLSTIANMSG---LSPELLQSYNR--GSD---FS-SGLVFIP  159 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~---vs~~~l~~~N~--~~~---~~-g~~l~iP  159 (188)
                      .+|+|++|||||+||++|.   .....|.++|+  +.+   +. |++|.||
T Consensus        96 ~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~pGq~L~IP  146 (147)
T PRK11198         96 QFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIP  146 (147)
T ss_pred             eEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCcCCEEecC
Confidence            5799999999999999984   35689999997  544   33 9999998

>PRK10190 L,D-transpeptidase; Provisional

Probab=97.48  E-value=0.00028  Score=58.77  Aligned_cols=47  Identities=26%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             cceEEEEeecCC--cHHHHHHHhCCCHHHHHhhcCCCCC---C-CCEEEEcCC
Q 047095          115 GLFLTYPIELGE--NLSTIANMSGLSPELLQSYNRGSDF---S-SGLVFIPEK  161 (188)
Q Consensus       115 ~~~~~y~V~~GD--Tl~~IA~~~~vs~~~l~~~N~~~~~---~-g~~l~iP~~  161 (188)
                      +....|+|+++|  +|..||++|++...+|+++|+..++   . |+.|.||..
T Consensus        35 G~~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgvd~~~p~~G~~i~iP~~   87 (310)
T PRK10190         35 GQSLTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQ   87 (310)
T ss_pred             cceEEEEecCCCCccHHHHHHHhCCCHHHHHHhCCCCCCCCCCCCCEEEecCc
Confidence            445789999966  5999999999999999999999984   3 999999975

>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]

Probab=97.47  E-value=4.5e-05  Score=62.66  Aligned_cols=50  Identities=10%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             eEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCC---C-CCCCccCCCcEEEEccc
Q 047095           52 FSYKIISHDTYAKVAETYYANLTTVDWLRANNI---F-PDNNIPDVNTTINVVVN  102 (188)
Q Consensus        52 ~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~---l-~~~~i~~~Gq~L~IP~~  102 (188)
                      .+|+|++|||||.||++.|+..+.+..|..+|.   + +++.|.+ ||.|.||..
T Consensus       211 ~~~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~p-Gq~l~iP~~  264 (269)
T COG1652         211 TTNTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKP-GQVLRIPDQ  264 (269)
T ss_pred             eEEEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCC-cceeeCCCc
Confidence            389999999999999988987656677999999   4 5789999 999999964

>PRK10260 L,D-transpeptidase; Provisional

Probab=97.46  E-value=0.00031  Score=58.42  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=40.7

Q ss_pred             cceEEEEeecCC--cHHHHHHHhCCCHHHHHhhcCCCC--C-C-CCEEEEcCC
Q 047095          115 GLFLTYPIELGE--NLSTIANMSGLSPELLQSYNRGSD--F-S-SGLVFIPEK  161 (188)
Q Consensus       115 ~~~~~y~V~~GD--Tl~~IA~~~~vs~~~l~~~N~~~~--~-~-g~~l~iP~~  161 (188)
                      +....|+|++||  +|..||++|++...+|+++|+..+  + . |++|.||..
T Consensus        38 G~~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgvdp~lp~~G~~i~iP~~   90 (306)
T PRK10260         38 GQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQ   90 (306)
T ss_pred             cccEEEEeCCCCCchHHHHHHHhCCCHHHHHHhCcCCCCCcCCCCCEEEeCCc
Confidence            344689999966  599999999999999999999988  3 3 999999985

>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein

Probab=96.87  E-value=0.0015  Score=44.40  Aligned_cols=48  Identities=17%  Similarity=0.106  Sum_probs=26.5

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHh---CCC--CCCCccCCCcEEEEccc
Q 047095           51 NFSYKIISHDTYAKVAETYYANLTTVDWLRAN---NIF--PDNNIPDVNTTINVVVN  102 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~---N~l--~~~~i~~~Gq~L~IP~~  102 (188)
                      |..|+|++||||+.|-+ ++|.  +..++.++   ...  .-..|++ ||.|.+-..
T Consensus         2 W~~~~V~~GDtLs~iF~-~~gl--s~~dl~~v~~~~~~~k~L~~L~p-Gq~l~f~~d   54 (85)
T PF04225_consen    2 WQEYTVKSGDTLSTIFR-RAGL--SASDLYAVLEADGEAKPLTRLKP-GQTLEFQLD   54 (85)
T ss_dssp             --EEE--TT--HHHHHH-HTT----HHHHHHHHHHGGGT--GGG--T-T-EEEEEE-
T ss_pred             CcEEEECCCCcHHHHHH-HcCC--CHHHHHHHHhccCccchHhhCCC-CCEEEEEEC
Confidence            56899999999999997 7764  77666554   321  2357999 999998764

This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.

>TIGR03505 FimV_core FimV N-terminal domain

Probab=96.84  E-value=0.0018  Score=42.87  Aligned_cols=41  Identities=15%  Similarity=0.003  Sum_probs=30.1

Q ss_pred             CcHHHHHHHHcCC-C-CCHH----HHHHhCCC-----CCCCccCCCcEEEEccc
Q 047095           60 DTYAKVAETYYAN-L-TTVD----WLRANNIF-----PDNNIPDVNTTINVVVN  102 (188)
Q Consensus        60 DTL~~IA~~~y~~-l-~s~~----~L~~~N~l-----~~~~i~~~Gq~L~IP~~  102 (188)
                      ||||+||+ +|.. - +++.    .|.+.||-     +.+.|+. |+.|.||..
T Consensus         1 DTLw~IA~-~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~-G~~L~iP~~   52 (74)
T TIGR03505         1 DTLWGIAQ-RVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKV-GQILRIPSE   52 (74)
T ss_pred             CcHHHHHH-HHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCC-CCEEeCCCH
Confidence            89999998 6631 0 2444    67789982     3578999 999999964

This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.

>TIGR03505 FimV_core FimV N-terminal domain

Probab=96.68  E-value=0.0026  Score=42.13  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             CcHHHHHHHh---C-CCHH----HHHhhcCCC----C---CC-CCEEEEcCCC
Q 047095          126 ENLSTIANMS---G-LSPE----LLQSYNRGS----D---FS-SGLVFIPEKD  162 (188)
Q Consensus       126 DTl~~IA~~~---~-vs~~----~l~~~N~~~----~---~~-g~~l~iP~~~  162 (188)
                      ||||+||++|   + +++.    .|.+.||..    +   ++ |++|.||...
T Consensus         1 DTLw~IA~~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~G~~L~iP~~~   53 (74)
T TIGR03505         1 DTLWGIAQRVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKVGQILRIPSEE   53 (74)
T ss_pred             CcHHHHHHHHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCCCCEEeCCCHH
Confidence            8999999998   4 6765    666778743    2   55 9999999754

This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.

>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX

Probab=96.48  E-value=0.0061  Score=38.65  Aligned_cols=47  Identities=23%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             EEecCCCcHHHHHHHHcCCCCC-HHHHHHhCCC--CC-CCccCCCcEEEEccc
Q 047095           54 YKIISHDTYAKVAETYYANLTT-VDWLRANNIF--PD-NNIPDVNTTINVVVN  102 (188)
Q Consensus        54 Y~V~~GDTL~~IA~~~y~~l~s-~~~L~~~N~l--~~-~~i~~~Gq~L~IP~~  102 (188)
                      |+. .||||..|+.+.||...- ++.+.++|+.  .- ..+.. |..|.+|.-
T Consensus         4 ~t~-~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpa-G~~I~lP~i   54 (60)
T PF05489_consen    4 YTT-QGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPA-GTVIILPDI   54 (60)
T ss_pred             EEe-CcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCC-CCEEECCCC
Confidence            444 999999999988886211 2678999993  22 45666 999999953

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.

>PRK10260 L,D-transpeptidase; Provisional

Probab=96.42  E-value=0.0086  Score=49.95  Aligned_cols=51  Identities=14%  Similarity=-0.016  Sum_probs=40.8

Q ss_pred             CceEEEecCCC--cHHHHHHHHcCCCCCHHHHHHhCCC-CCCCccCCCcEEEEcccCC
Q 047095           50 NNFSYKIISHD--TYAKVAETYYANLTTVDWLRANNIF-PDNNIPDVNTTINVVVNCS  104 (188)
Q Consensus        50 ~~~~Y~V~~GD--TL~~IA~~~y~~l~s~~~L~~~N~l-~~~~i~~~Gq~L~IP~~~~  104 (188)
                      ....|+|++|+  +|..||+ +|+.  ...+|+++|+. ++-.... |++|.||..--
T Consensus        39 ~~~~~~v~~~~~~~le~iA~-~f~~--g~~~l~~aNPgvdp~lp~~-G~~i~iP~~~i   92 (306)
T PRK10260         39 QNQVITIPEGNTQPLEYFAA-EYQM--GLSNMMEANPGVDTFLPKG-GTVLNIPQQLI   92 (306)
T ss_pred             ccEEEEeCCCCCchHHHHHH-HhCC--CHHHHHHhCcCCCCCcCCC-CCEEEeCCccC
Confidence            44689999966  5999997 8995  99999999995 4445567 99999997533

>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein

Probab=96.41  E-value=0.0037  Score=42.50  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=23.7

Q ss_pred             EEEEeecCCcHHHHHHHhCCCHHHHHhh---cC----CCCCC-CCEEEEcCC
Q 047095          118 LTYPIELGENLSTIANMSGLSPELLQSY---NR----GSDFS-SGLVFIPEK  161 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~---N~----~~~~~-g~~l~iP~~  161 (188)
                      ..|+|++||||+.|=+++|++..+|.+.   +.    +..++ |+.|-+=+.
T Consensus         3 ~~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~d   54 (85)
T PF04225_consen    3 QEYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQLD   54 (85)
T ss_dssp             -EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE-
T ss_pred             cEEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEEEEEC
Confidence            5799999999999999999977655544   42    22255 888766544

This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.

>PRK10190 L,D-transpeptidase; Provisional

Probab=96.36  E-value=0.0097  Score=49.75  Aligned_cols=51  Identities=8%  Similarity=0.049  Sum_probs=40.7

Q ss_pred             CceEEEecCCC--cHHHHHHHHcCCCCCHHHHHHhCCC-CCCCccCCCcEEEEcccCC
Q 047095           50 NNFSYKIISHD--TYAKVAETYYANLTTVDWLRANNIF-PDNNIPDVNTTINVVVNCS  104 (188)
Q Consensus        50 ~~~~Y~V~~GD--TL~~IA~~~y~~l~s~~~L~~~N~l-~~~~i~~~Gq~L~IP~~~~  104 (188)
                      ....|+|+++|  +|..||+ +|+.  ...+|.++|+. ++-...+ |++|.||..-.
T Consensus        36 ~~~~~~v~~~~~~~le~iA~-~f~~--g~~~l~~aNPgvd~~~p~~-G~~i~iP~~~i   89 (310)
T PRK10190         36 QSLTVTVPDHNTQPLETFAA-QYGQ--GLSNMLEANPGADVFLPKS-GSQLTIPQQLI   89 (310)
T ss_pred             ceEEEEecCCCCccHHHHHH-HhCC--CHHHHHHhCCCCCCCCCCC-CCEEEecCccc
Confidence            44679999966  5999997 8995  99999999995 4444567 99999997533

>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]

Probab=96.07  E-value=0.0025  Score=52.32  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             EEEEeecCCcHHHHHH-HhCCC--HHHHHhhcCC---CC---CC-CCEEEEcCCC
Q 047095          118 LTYPIELGENLSTIAN-MSGLS--PELLQSYNRG---SD---FS-SGLVFIPEKD  162 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~-~~~vs--~~~l~~~N~~---~~---~~-g~~l~iP~~~  162 (188)
                      .+|+|++|||||.||+ .||..  ...|..+|+.   .+   +. ||++.||-..
T Consensus       211 ~~~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~pGq~l~iP~~~  265 (269)
T COG1652         211 TTNTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKPGQVLRIPDQL  265 (269)
T ss_pred             eEEEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCCcceeeCCCcc
Confidence            4899999999999995 57764  4778899993   33   33 9999999653

>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX

Probab=95.34  E-value=0.032  Score=35.33  Aligned_cols=39  Identities=26%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             ecCCcHHHHH-HHhCCC---HHHHHhhcCCCC-----CC-CCEEEEcCC
Q 047095          123 ELGENLSTIA-NMSGLS---PELLQSYNRGSD-----FS-SGLVFIPEK  161 (188)
Q Consensus       123 ~~GDTl~~IA-~~~~vs---~~~l~~~N~~~~-----~~-g~~l~iP~~  161 (188)
                      +.|||+-.|| +.||-.   ++.+.++|+...     +. |..|.+|--
T Consensus         6 ~~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpaG~~I~lP~i   54 (60)
T PF05489_consen    6 TQGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPAGTVIILPDI   54 (60)
T ss_pred             eCcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCCCCEEECCCC
Confidence            4999999999 678863   378999999752     34 999999954

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.

>PRK11649 putative peptidase; Provisional

Probab=94.16  E-value=0.36  Score=42.53  Aligned_cols=95  Identities=11%  Similarity=0.144  Sum_probs=58.9

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCC--CCCCCccCCCcEEEEcccCCCC--------CC-c---ccC-Cc
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNI--FPDNNIPDVNTTINVVVNCSCG--------DK-K---VSK-DY  114 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~--l~~~~i~~~Gq~L~IP~~~~~~--------~~-~---~~~-~~  114 (188)
                      .+..|+|++||||.+|=+ ++|.  +..++.++-.  .....|++ ||.+.+-....-.        +. .   ... +.
T Consensus        94 ~~~~~~Vk~GDTl~~iL~-r~Gi--~~~di~~l~~~~~~L~~Lr~-Gq~l~~~~d~dG~L~~l~~~~s~~~~~v~~R~dg  169 (439)
T PRK11649         94 GVHEYVVSTGDTLSSILN-QYGI--DMSDISQLAAQDKELRNLKI-GQQLSWTLTADGDLQRLTWEVSRRETRTYDRTGN  169 (439)
T ss_pred             ceEEEEeCCCCCHHHHHH-HcCC--CHHHHHHHHHcChHhhcCCC-CCEEEEEECCCCCeEEEEEEeCCCeEEEEEecCC
Confidence            456899999999999996 7875  8777776632  12357999 9999986532110        00 0   000 00


Q ss_pred             cc------------eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCC
Q 047095          115 GL------------FLTYPIELGENLSTIANMSGLSPELLQSYNRG  148 (188)
Q Consensus       115 ~~------------~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~  148 (188)
                      .+            .......=..+|+.-|.+-|++...++++-.+
T Consensus       170 ~F~~~~~~~~~~~~~~~~~g~I~~Sl~~sa~~agl~~~~i~~~~~~  215 (439)
T PRK11649        170 GFKETSEMQQGEWVNSVLKGTVGGSFVASAKNAGLTSAEISAVIKA  215 (439)
T ss_pred             cEEEEEeecccEEEEEEEEEEEeccHHHHHHHcCCCHHHHHHHHHH
Confidence            00            00111112468999999999988777766553

>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]

Probab=94.09  E-value=0.15  Score=40.40  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             cceEEEEeecCCcHHHHHHHhCCCHHHHHhh-------cCCCCCC-CCEEEEcCCC
Q 047095          115 GLFLTYPIELGENLSTIANMSGLSPELLQSY-------NRGSDFS-SGLVFIPEKD  162 (188)
Q Consensus       115 ~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~-------N~~~~~~-g~~l~iP~~~  162 (188)
                      +...+|+|+.|+||..+=|..++.+.|+-+.       |++++++ ||.+.|-+..
T Consensus       157 g~wqsy~V~~G~TLaQlFRdn~LpitDVnAMakveGagkpLSnlkaGq~Vki~~na  212 (242)
T COG3061         157 GNWQSYTVPQGKTLAQLFRDNNLPITDVNAMAKVEGAGKPLSNLKAGQKVKISLNA  212 (242)
T ss_pred             ccceeEEecCCccHHHHHhccCCChHHhHHHHhhccCCCchhhccCCCEEEEEEcC
Confidence            3568999999999999999999877665443       5566688 9999998764

>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.79  E-value=0.063  Score=49.30  Aligned_cols=53  Identities=21%  Similarity=0.119  Sum_probs=37.8

Q ss_pred             cCceEEEecCCCcHHHHHHHHcC-CCCCH----HHHHHhCCC---C--CCCccCCCcEEEEccc
Q 047095           49 ANNFSYKIISHDTYAKVAETYYA-NLTTV----DWLRANNIF---P--DNNIPDVNTTINVVVN  102 (188)
Q Consensus        49 ~~~~~Y~V~~GDTL~~IA~~~y~-~l~s~----~~L~~~N~l---~--~~~i~~~Gq~L~IP~~  102 (188)
                      ....+|+|++|||||.||.+.-. .-+|+    ..|.++||-   +  -+.++. |++|.||.-
T Consensus       186 a~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~-GSvLriP~~  248 (755)
T COG3170         186 APGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRA-GSVLRIPSA  248 (755)
T ss_pred             CCCcccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccc-cceeeccch
Confidence            34678999999999999974322 11233    346678982   2  358899 999999964

>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]

Probab=91.50  E-value=0.75  Score=36.59  Aligned_cols=73  Identities=16%  Similarity=0.104  Sum_probs=44.7

Q ss_pred             CCCCCCEEEEcCccccC-CCccccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHh---CCCC--CCCccCCCcEEEEc
Q 047095           27 ILSVGSRIKVPFKCNCI-NGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRAN---NIFP--DNNIPDVNTTINVV  100 (188)
Q Consensus        27 ~l~~Gq~L~IP~~~~~~-~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~---N~l~--~~~i~~~Gq~L~IP  100 (188)
                      .+..++...+|...... -......|.+|+|++|+||..+-| ..+ | ...++-++   -+-+  -..++. ||.+.|-
T Consensus       134 p~q~~q~~~v~~~~~~~P~~~s~g~wqsy~V~~G~TLaQlFR-dn~-L-pitDVnAMakveGagkpLSnlka-Gq~Vki~  209 (242)
T COG3061         134 PIQAKQEKKVPRTVDAQPFKPSSGNWQSYTVPQGKTLAQLFR-DNN-L-PITDVNAMAKVEGAGKPLSNLKA-GQKVKIS  209 (242)
T ss_pred             hhhccCccccCCccccCccccCcccceeEEecCCccHHHHHh-ccC-C-ChHHhHHHHhhccCCCchhhccC-CCEEEEE
Confidence            34455666665322111 111233789999999999999996 443 3 54444433   3321  257999 9999998


Q ss_pred             ccC
Q 047095          101 VNC  103 (188)
Q Consensus       101 ~~~  103 (188)
                      ...
T Consensus       210 ~na  212 (242)
T COG3061         210 LNA  212 (242)
T ss_pred             EcC
Confidence            754

>PRK11649 putative peptidase; Provisional

Probab=90.87  E-value=0.46  Score=41.89  Aligned_cols=45  Identities=16%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             eEEEEeecCCcHHHHHHHhCCCHHHHHhh---cC-CCCCC-CCEEEEcCC
Q 047095          117 FLTYPIELGENLSTIANMSGLSPELLQSY---NR-GSDFS-SGLVFIPEK  161 (188)
Q Consensus       117 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~---N~-~~~~~-g~~l~iP~~  161 (188)
                      ...|+|++||||.+|-+++|++..++.++   +. +.+++ |+.+.+=+.
T Consensus        95 ~~~~~Vk~GDTl~~iL~r~Gi~~~di~~l~~~~~~L~~Lr~Gq~l~~~~d  144 (439)
T PRK11649         95 VHEYVVSTGDTLSSILNQYGIDMSDISQLAAQDKELRNLKIGQQLSWTLT  144 (439)
T ss_pred             eEEEEeCCCCCHHHHHHHcCCCHHHHHHHHHcChHhhcCCCCCEEEEEEC
Confidence            46899999999999999999988777765   21 12355 888776443

>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.15  E-value=0.2  Score=46.11  Aligned_cols=47  Identities=23%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             eEEEEeecCCcHHHHHHHh----CCCH----HHHHhhcCCC----C---CC-CCEEEEcCCCC
Q 047095          117 FLTYPIELGENLSTIANMS----GLSP----ELLQSYNRGS----D---FS-SGLVFIPEKDQ  163 (188)
Q Consensus       117 ~~~y~V~~GDTl~~IA~~~----~vs~----~~l~~~N~~~----~---~~-g~~l~iP~~~~  163 (188)
                      ..+|+|++|||||+||.+-    ++|+    ..|.++|+..    +   ++ |.+|.||....
T Consensus       188 g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~GSvLriP~~~q  250 (755)
T COG3170         188 GDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRIPSAAQ  250 (755)
T ss_pred             CcccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccccceeeccchhh
Confidence            3689999999999999653    3555    4556678853    1   34 99999997543

>PF13518 HTH_28: Helix-turn-helix domain

Probab=87.12  E-value=0.59  Score=27.78  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.9

Q ss_pred             ecCCcHHHHHHHhCCCHHHHHhhc
Q 047095          123 ELGENLSTIANMSGLSPELLQSYN  146 (188)
Q Consensus       123 ~~GDTl~~IA~~~~vs~~~l~~~N  146 (188)
                      ..|+|+..+|++||++...+..|=
T Consensus        10 ~~g~s~~~~a~~~gis~~tv~~w~   33 (52)
T PF13518_consen   10 LEGESVREIAREFGISRSTVYRWI   33 (52)
T ss_pred             HcCCCHHHHHHHHCCCHhHHHHHH
Confidence            368899999999999998888774

>COG5004 P2-like prophage tail protein X [General function prediction only]

Probab=82.76  E-value=2.9  Score=26.72  Aligned_cols=50  Identities=14%  Similarity=0.045  Sum_probs=36.4

Q ss_pred             eEEEecCCCcHHHHHHHHcCCCCC-HHHHHHhCCCC---CCCccCCCcEEEEccc
Q 047095           52 FSYKIISHDTYAKVAETYYANLTT-VDWLRANNIFP---DNNIPDVNTTINVVVN  102 (188)
Q Consensus        52 ~~Y~V~~GDTL~~IA~~~y~~l~s-~~~L~~~N~l~---~~~i~~~Gq~L~IP~~  102 (188)
                      ..|....|||+..++.+.|+..+. .+.+.++|+.-   ...+.. |-.|.+|..
T Consensus         3 ~~~Rt~~gDtvDalc~~~Ygrt~~v~eavl~ANpGlAd~gp~lp~-gl~i~lPD~   56 (70)
T COG5004           3 MIVRTRQGDTVDALCWRVYGRTTGVTEAVLEANPGLADWGPVLPH-GLAITLPDI   56 (70)
T ss_pred             eEEEeccCchHHHHHHHHHhhHHHHHHHHHhcCCChhhcCCCCcc-ceeEecCCC
Confidence            356778899999999988886322 36688899842   235666 888888854

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=82.62  E-value=2.5  Score=36.12  Aligned_cols=47  Identities=13%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCC-CHHHHHHhCCCC-CCCccCCCcEEEE
Q 047095           51 NFSYKIISHDTYAKVAETYYANLT-TVDWLRANNIFP-DNNIPDVNTTINV   99 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~-s~~~L~~~N~l~-~~~i~~~Gq~L~I   99 (188)
                      ....+|++|||+.++|. +..+.. +.+-++-+|.+. ...+.+ |+.++|
T Consensus       428 irvvtVk~GqT~~~lAA-~m~G~~rkldlfRllNam~~~a~~~p-Gd~vKi  476 (479)
T COG4784         428 IRVVTVKPGQTMASLAA-RMMGTDRKLDLFRLLNAMSPGATVRP-GDKVKI  476 (479)
T ss_pred             EEEEEecCCccHHHHHh-hccCchhHHHHHHHHhccCCCCcCCC-CCeeee
Confidence            45678999999999998 444421 245577788875 457888 999987

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=81.88  E-value=1.5  Score=25.65  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=17.1

Q ss_pred             ecCCcHHHHHHHhCCCHHHHHhh
Q 047095          123 ELGENLSTIANMSGLSPELLQSY  145 (188)
Q Consensus       123 ~~GDTl~~IA~~~~vs~~~l~~~  145 (188)
                      +.|-|+..||+.||++...|.++
T Consensus        19 ~~G~si~~IA~~~gvsr~TvyR~   41 (45)
T PF02796_consen   19 AEGMSIAEIAKQFGVSRSTVYRY   41 (45)
T ss_dssp             HTT--HHHHHHHTTS-HHHHHHH
T ss_pred             HCCCCHHHHHHHHCcCHHHHHHH
Confidence            56899999999999999887654

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition

Probab=81.38  E-value=0.94  Score=29.25  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=20.9

Q ss_pred             eecCCcHHHHHHHhCCCHHHHHhh
Q 047095          122 IELGENLSTIANMSGLSPELLQSY  145 (188)
Q Consensus       122 V~~GDTl~~IA~~~~vs~~~l~~~  145 (188)
                      ...|.|+..+|++|||+...|..|
T Consensus        20 ~~~g~sv~~va~~~gi~~~~l~~W   43 (76)
T PF01527_consen   20 LESGESVSEVAREYGISPSTLYNW   43 (76)
T ss_dssp             HHHHCHHHHHHHHHTS-HHHHHHH
T ss_pred             HHCCCceEeeecccccccccccHH
Confidence            467999999999999999999888

This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
4eby_A	212	Crystal Structure Of The Ectodomain Of A Receptor L		2e-43

>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like Kinase Length = 212

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 119/164 (72%), Gaps = 3/164 (1%)
Query: 13  DNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYAN 72
           D IL +N  + DKD + +GSR+ VPF C C  G FL +NFSY +   DTY +VA + YAN
Sbjct: 40  DPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYAN 99
Query: 73  LTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIA 132
           LTT++ L+A N FP  NIP ++ T+NV+VNCSCGD+ VSKD+GLF+TYP+   ++LS+IA
Sbjct: 100 LTTMESLQARNPFPATNIP-LSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIA 158
Query: 133 NMSGLSPELLQSYNRGSDFSS--GLVFIPEKDQSGKYPPLQMSR 174
             SG+S ++LQ YN G +F+S  G+V++P +D +G +PP + S+
Sbjct: 159 RSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKSSK 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	6e-50
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212

 Score =  159 bits (404), Expect = 6e-50
 Identities = 83/178 (46%), Positives = 123/178 (69%), Gaps = 3/178 (1%)

Query: 2   TFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDT 61
           + I+     + D IL +N  + DKD + +GSR+ VPF C C  G FL +NFSY +   DT
Sbjct: 29  SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDT 88

Query: 62  YAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYP 121
           Y +VA + YANLTT++ L+A N FP  NIP ++ T+NV+VNCSCGD+ VSKD+GLF+TYP
Sbjct: 89  YERVAISNYANLTTMESLQARNPFPATNIP-LSATLNVLVNCSCGDESVSKDFGLFVTYP 147

Query: 122 IELGENLSTIANMSGLSPELLQSYNRGSDFS--SGLVFIPEKDQSGKYPPLQMSRDGT 177
           +   ++LS+IA  SG+S ++LQ YN G +F+  +G+V++P +D +G +PP + S+   
Sbjct: 148 LRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKSSKQDG 205

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 53  SYKIISHDTYAKVAETY------YANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCG 106
           SY + +  T + + +        Y  +     LR N+   D +   + + + V   C C 
Sbjct: 11  SYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQ 70

Query: 107 DKKVSKDYGLFLTYPIELGENLSTIAN---MSGLSPELLQSYNRGSD 150
                   G   +Y +   +    +A     +  + E LQ+ N    
Sbjct: 71  P---GDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPA 114

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 31/154 (20%)

Query: 37  PFKCNCINGQFLANNFS----YKIISHDTYAKVAETYYANLTTVDWLRAN----NIFPDN 88
           P + + I  + + +  +    +K ++ D    + E+    L   +  R      ++FP +
Sbjct: 327 PRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPS 384

Query: 89  -NIP--------------DVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIAN 133
            +IP              DV   +N +   S  +K+  K+  + +   I L E    + N
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISI-PSIYL-ELKVKLEN 441

Query: 134 MSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGKY 167
              L   ++  YN    F S  +  P  DQ   Y
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---Y 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	100.0
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.94
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	99.66
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	99.47
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	99.46
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	99.32
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	99.32
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	99.28
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	99.24
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	98.94
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	98.7
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	98.39
3slu_A	371	M23 peptidase domain protein; outer membrane, hydr	97.16
3slu_A	371	M23 peptidase domain protein; outer membrane, hydr	95.34
2glo_A	59	Brinker CG9653-PA; protein-DNA complex, helix-turn	82.2

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=100.00  E-value=5.3e-42  Score=270.52  Aligned_cols=174  Identities=49%  Similarity=0.941  Sum_probs=151.2

Q ss_pred             ChhHHHHcCCCH--------HHHHhcCCCCCCCCCCCCCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCC
Q 047095            1 MTFISEMFDTSI--------DNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYAN   72 (188)
Q Consensus         1 L~~IA~~~gvs~--------~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~   72 (188)
                      |+.||++||+++        ++|+++||+|++++.|.+||.|+||..|.|.++........|+|++|||||.||+++|++
T Consensus        20 L~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~   99 (212)
T 4eby_A           20 LSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYAN   99 (212)
T ss_dssp             HHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTTEEEEEEEEECCTTCCHHHHHHTTTTT
T ss_pred             HHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCccccCceEEEecCCCcHHHHHHHhcCC
Confidence            689999999999        999999999977789999999999999988755444456789999999999999338996


Q ss_pred             CCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCCCC
Q 047095           73 LTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFS  152 (188)
Q Consensus        73 l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~~~  152 (188)
                      ++++++|+++|++.++.|.+ ||.|.||..|.|+..+.+...+...+|+|++|||||+||++||+++++|++||++.++.
T Consensus       100 lvt~~~L~~~N~~~~~~l~~-Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~~~  178 (212)
T 4eby_A          100 LTTMESLQARNPFPATNIPL-SATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFN  178 (212)
T ss_dssp             SSCHHHHHHHCCSCTTCCCT-TCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHHHTSCHHHHHHHSTTCCTT
T ss_pred             CCCHHHHHHhcCCCcccCCC-CCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHHHHHHHHCcCHHHHHHhcCCCccC
Confidence            67999999999988889999 99999999999876544444556689999999999999999999999999999998744


Q ss_pred             --CCEEEEcCCCCCCCCCCcccCCC
Q 047095          153 --SGLVFIPEKDQSGKYPPLQMSRD  175 (188)
Q Consensus       153 --g~~l~iP~~~~~~~~~p~~~~~~  175 (188)
                        +++|+||.+.+++.++|+.+.++
T Consensus       179 ~~~g~l~IP~~~~~~~~~~~~~~~~  203 (212)
T 4eby_A          179 SGNGIVYVPGRDPNGAFPPFKSSKQ  203 (212)
T ss_dssp             SCSSEEEEECCCTTSCCCCCCC---
T ss_pred             CCCCEEEecCCCCCCccCCcccccc
Confidence              66699999999999999977765

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.94  E-value=4e-27  Score=185.53  Aligned_cols=130  Identities=15%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCH--------HHHHHhC-CC-CCCCccCCCcEEEEcccCCCCCCcccCCccceEE
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTV--------DWLRANN-IF-PDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLT  119 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~--------~~L~~~N-~l-~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~  119 (188)
                      .+..|+|++|||||.||+ +|+.  ++        ++|+++| .+ +++.|.+ ||.|.||..|.|....   ......+
T Consensus         8 a~~~Y~V~~GDTL~~IA~-~~~v--sv~~~~~~~~~~I~~~Np~l~~~~~l~~-Gq~L~IP~~~~~~~~~---~~~~~~~   80 (212)
T 4eby_A            8 ALASYYLENGTTLSVINQ-NLNS--SIAPYDQINFDPILRYNSNIKDKDRIQM-GSRVLVPFPCECQPGD---FLGHNFS   80 (212)
T ss_dssp             EEEEEECCTTCCHHHHHH-HTCC--SSSCCCSSCCHHHHTTCTTCSCTTSCCT-TCEEEEEECCEEETTT---EEEEEEE
T ss_pred             ceEEEEeCCCCCHHHHHH-HHCC--CchhccccCHHHHHHhccCCCCcCccCC-CCEEEEeccccccCCc---cccCceE
Confidence            356899999999999997 8986  77        9999999 67 4789999 9999999998885321   1223478


Q ss_pred             EEeecCCcHHHHH-HHhC--CCHHHHHhhcCCCC--CC-CCEEEEcCCCCCCCCC--------CcccCCCCCcHHHhhhh
Q 047095          120 YPIELGENLSTIA-NMSG--LSPELLQSYNRGSD--FS-SGLVFIPEKDQSGKYP--------PLQMSRDGTDFFECASL  185 (188)
Q Consensus       120 y~V~~GDTl~~IA-~~~~--vs~~~l~~~N~~~~--~~-g~~l~iP~~~~~~~~~--------p~~~~~~~~~~~~~~~~  185 (188)
                      |+|++|||||+|| ++|+  +++++|+++|++..  +. ||+|.||..+......        -.+..+.|||+|.||+-
T Consensus        81 Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~  160 (212)
T 4eby_A           81 YSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARS  160 (212)
T ss_dssp             EECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHH
T ss_pred             EEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHHHHHHH
Confidence            9999999999999 7999  99999999999543  45 9999999865322111        12667999999999975


Q ss_pred             h
Q 047095          186 L  186 (188)
Q Consensus       186 ~  186 (188)
                      .
T Consensus       161 f  161 (212)
T 4eby_A          161 S  161 (212)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=99.66  E-value=3e-18  Score=130.05  Aligned_cols=96  Identities=10%  Similarity=-0.006  Sum_probs=74.6

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-CCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcH
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-DNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENL  128 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl  128 (188)
                      ....|+|++|||||.||+ +|+.  ++.+|+++|++. ++.|++ ||+|.||.....+.............|.|++||||
T Consensus        61 ~~~~y~V~~GDTL~~IA~-~~~~--~~~~l~~~N~~~~~~~i~~-Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL  136 (167)
T 2l9y_A           61 GTATVTVQQGDTLRDIGR-RFDC--DFHEIARRNNIQNEDLIYP-GQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVL  136 (167)
T ss_dssp             SCEEEEECTTCCHHHHHH-HTTC--CHHHHHHHHTCCGGGCCCT-TEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEE
T ss_pred             CCceEEECCCCcHHHHHH-HcCC--CHHHHHHHcCCCCcccccC-CCEEEEcCCCCccccccccccccceEEEeCCcCCh
Confidence            456899999999999997 8975  999999999984 689999 99999997543211100001122367999999999


Q ss_pred             HHHHHHhCCCHHHHHhhcCCC
Q 047095          129 STIANMSGLSPELLQSYNRGS  149 (188)
Q Consensus       129 ~~IA~~~~vs~~~l~~~N~~~  149 (188)
                      +.||++||.+++..+.+|...
T Consensus       137 ~aIA~r~G~~v~s~i~Ln~~I  157 (167)
T 2l9y_A          137 EAELRYSGGWNRSRIYLDEHI  157 (167)
T ss_dssp             EEEEEETTEEEEEEECGGGTE
T ss_pred             HHHHHHcCCceEEEEEccccc
Confidence            999988998887777777654

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=99.47  E-value=7.7e-14  Score=117.76  Aligned_cols=107  Identities=12%  Similarity=0.049  Sum_probs=81.0

Q ss_pred             CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-----CCCccCCCcEEEEcccCCCCC---------C-c----c
Q 047095           50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-----DNNIPDVNTTINVVVNCSCGD---------K-K----V  110 (188)
Q Consensus        50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-----~~~i~~~Gq~L~IP~~~~~~~---------~-~----~  110 (188)
                      .+..|+|++||||++|++ +|+.  ++++|.++|++.     .+.|++ ||+|.||......-         . .    .
T Consensus         6 ~~~~~~Vk~GDTL~~Ia~-r~gv--s~~~l~~~n~~~~~~~~~~~L~~-Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~   81 (361)
T 2gu1_A            6 KRIHYMVKVGDTLSGIFA-QLGV--PYSILQKILSVDLDHLQLDMIQP-GEELELMMDDMGQLSRLIYHMSIVEKAIYTR   81 (361)
T ss_dssp             -CEEEECCTTCCHHHHHH-HTTC--CHHHHHHHHHHGGGTCCGGGCCT-TCEEEEEECTTSCEEEEEEEEETTEEEEEEE
T ss_pred             CceEEEECCCCcHHHHHH-HcCC--CHHHHHHHHhhcccccchhcCCC-CCEEEEEECCCCcceEEEEEcCccceEEEEe
Confidence            567899999999999997 8985  999999999864     468999 99999997532100         0 0    0


Q ss_pred             cCC------------ccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--------CC-CCEEEEcC
Q 047095          111 SKD------------YGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--------FS-SGLVFIPE  160 (188)
Q Consensus       111 ~~~------------~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--------~~-g~~l~iP~  160 (188)
                      ..+            ......|.|+.|||||+||++||++.++|++||++..        ++ |+.+.|+.
T Consensus        82 ~~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~  152 (361)
T 2gu1_A           82 ENDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILV  152 (361)
T ss_dssp             CTTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred             cCCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence            000            0113578999999999999999999999999998642        44 99988875

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=7.1e-14  Score=92.68  Aligned_cols=62  Identities=19%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCCCCCCCC
Q 047095           94 NTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIPEKDQSGKY  167 (188)
Q Consensus        94 Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~~~~~~~  167 (188)
                      ||.+.+|..            ....+|+|++|||||+||++|++++++|+++|++.+   +. |++|+||....+...
T Consensus         4 Gq~l~ip~~------------~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~~~~   69 (77)
T 2djp_A            4 GSSGCSPVR------------ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDL   69 (77)
T ss_dssp             CCCCCCCCC------------EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCSCCS
T ss_pred             CcEeeccCC------------CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCCCCc
Confidence            888888852            234789999999999999999999999999999874   33 999999987655433

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=99.32  E-value=9.7e-13  Score=99.67  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=54.8

Q ss_pred             eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCCCCCCCC--------CCcccCCCCCcHHHhhh
Q 047095          117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIPEKDQSGKY--------PPLQMSRDGTDFFECAS  184 (188)
Q Consensus       117 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~~~~~~~--------~p~~~~~~~~~~~~~~~  184 (188)
                      ..+|+|++|||||+||++|++++.+|+++|++.+   +. ||+|.||........        +....++.|+|++.+|+
T Consensus        62 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~aIA~  141 (167)
T 2l9y_A           62 TATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLEAELR  141 (167)
T ss_dssp             CEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEEEEEE
T ss_pred             CceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChHHHHH
Confidence            3689999999999999999999999999999886   44 999999986543111        12344678999998875

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9.3e-13  Score=87.22  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             CCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-CCCccCCCcEEEEcccC
Q 047095           30 VGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-DNNIPDVNTTINVVVNC  103 (188)
Q Consensus        30 ~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~~~i~~~Gq~L~IP~~~  103 (188)
                      .||.+.+|...         ....|+|++|||||.||+ +|+.  ++++|+++|++. ++.|.+ ||+|.||...
T Consensus         3 ~Gq~l~ip~~~---------~~~~y~V~~GDTL~~IA~-~~~~--~~~~l~~~N~l~~~~~l~~-Gq~l~iP~~~   64 (77)
T 2djp_A            3 SGSSGCSPVRE---------RRLEHQLEPGDTLAGLAL-KYGV--TMEQIKRANRLYTNDSIFL-KKTLYIPILT   64 (77)
T ss_dssp             CCCCCCCCCCE---------EEEEECCCTTCCHHHHHH-HHTC--CHHHHHHHHTCCCSSCGGG-SSCEEEEEEC
T ss_pred             CCcEeeccCCC---------CcEEEEECCCCcHHHHHH-HHCc--CHHHHHHHcCCCCccccCC-CCEEEECCCC
Confidence            68999998642         356899999999999997 8985  999999999985 678999 9999999753

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=99.28  E-value=4.6e-12  Score=76.03  Aligned_cols=43  Identities=23%  Similarity=0.389  Sum_probs=38.4

Q ss_pred             EEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcCC
Q 047095          118 LTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPEK  161 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~~  161 (188)
                      .+|+|++|||||+||++||+++++|+++|+ ..  +. |+.|.||+.
T Consensus         3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G~~l~ip~~   48 (48)
T 1e0g_A            3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPGDKLTLFVK   48 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTTEEEECCCC
T ss_pred             EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcCCEEEEecC
Confidence            479999999999999999999999999998 32  45 999999963

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=99.24  E-value=9e-12  Score=74.73  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095           51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV  101 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~  101 (188)
                      ...|+|++|||||+||+ +|+.  ++++|.++|+ .++.+.+ ||.|.||.
T Consensus         2 ~~~y~V~~GDtl~~Ia~-~~~~--~~~~l~~~N~-~~~~l~~-G~~l~ip~   47 (48)
T 1e0g_A            2 SITYRVRKGDSLSSIAK-RHGV--NIKDVMRWNS-DTANLQP-GDKLTLFV   47 (48)
T ss_dssp             CCEEEECTTCCHHHHHH-HHTC--CHHHHHHHCS-CGGGCCT-TEEEECCC
T ss_pred             CEEEEEcCCCcHHHHHH-HHCc--CHHHHHHhCC-CCCcCCc-CCEEEEec
Confidence            35799999999999997 8985  9999999999 7788999 99999995

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=98.94  E-value=3.7e-10  Score=95.20  Aligned_cols=97  Identities=10%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             ChhHHHHcCCCHHHHHhcCCCCCC----CCCCCCCCEEEEcCccccC--------------------CCcc---------
Q 047095            1 MTFISEMFDTSIDNILSFNPQVPD----KDILSVGSRIKVPFKCNCI--------------------NGQF---------   47 (188)
Q Consensus         1 L~~IA~~~gvs~~~l~~~Np~l~~----~~~l~~Gq~L~IP~~~~~~--------------------~~~~---------   47 (188)
                      |+.||++||++.++|+++| ++..    .+.|.+||.|.||......                    ++..         
T Consensus        18 L~~Ia~r~gvs~~~l~~~n-~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~f~~~~~~~~~   96 (361)
T 2gu1_A           18 LSGIFAQLGVPYSILQKIL-SVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDFQEISG   96 (361)
T ss_dssp             HHHHHHHTTCCHHHHHHHH-HHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECCC
T ss_pred             HHHHHHHcCCCHHHHHHHH-hhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCCcceeeecccCc
Confidence            6899999999999999999 5532    3679999999999643210                    0000         


Q ss_pred             ccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-C-----CCccCCCcEEEEccc
Q 047095           48 LANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-D-----NNIPDVNTTINVVVN  102 (188)
Q Consensus        48 ~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~-----~~i~~~Gq~L~IP~~  102 (188)
                      ......|+|+.|||||.||+ +|+.  +.++|+++|++. .     ..|++ ||++.|+..
T Consensus        97 ~~~~~~~~v~igdSL~~iA~-~~Gv--s~~~i~~ln~i~~~~idf~~~Lr~-GD~l~V~~~  153 (361)
T 2gu1_A           97 EWREILFSGEINGSFSVSAR-RVGL--TSSQVANITQVMKDKIDFSRSLRA-GDRFDILVK  153 (361)
T ss_dssp             EEEEEEEEEESSSCHHHHHH-HTTC--CHHHHHHHHHHHTTTCCTTTCCCC--CEEEEEEE
T ss_pred             eEEEEEEEEEECCcHHHHHH-HcCC--CHHHHHHHHHhhcccccccccCCC-CCEEEEEEE
Confidence            01124688999999999997 8985  999999999852 2     46999 999999864

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=98.70  E-value=1.3e-08  Score=76.81  Aligned_cols=44  Identities=27%  Similarity=0.419  Sum_probs=40.2

Q ss_pred             eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcC
Q 047095          117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPE  160 (188)
Q Consensus       117 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~  160 (188)
                      ..+|+|++||||++||++|+++..+|+++|+..+  +. |+.+.||.
T Consensus         2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip~   48 (165)
T 4a1k_A            2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG   48 (165)
T ss_dssp             CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred             CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCcc
Confidence            3689999999999999999999999999999876  44 99999995

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=98.39  E-value=2.8e-07  Score=69.34  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095           51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV  101 (188)
Q Consensus        51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~  101 (188)
                      ..+|+|++||||..||+ +|+.  ...+|+++|+.....+.+ |+++.||.
T Consensus         2 ~~~y~V~~GdtL~~IA~-~f~~--g~~~l~~aNp~vd~~l~~-g~~i~ip~   48 (165)
T 4a1k_A            2 MLTYQVKQGDTLNSIAA-DFRI--STAALLQANPSLQAGLTA-GQSIVIPG   48 (165)
T ss_dssp             CEEEECCTTCCHHHHHH-HTTC--CHHHHHHHCGGGGGCCCT-TCEEEETT
T ss_pred             CEEEEECCCCCHHHHHH-HhCC--CHHHHHHhCccCCCccCC-CccccCcc
Confidence            46899999999999997 8985  999999999864345778 99999985

>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}

Probab=97.16  E-value=0.0019  Score=54.37  Aligned_cols=108  Identities=12%  Similarity=0.050  Sum_probs=72.0

Q ss_pred             cCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCC-----CCCCccCCCcEEEEcccCCCCCCc----ccCC------
Q 047095           49 ANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIF-----PDNNIPDVNTTINVVVNCSCGDKK----VSKD------  113 (188)
Q Consensus        49 ~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l-----~~~~i~~~Gq~L~IP~~~~~~~~~----~~~~------  113 (188)
                      ..|..|+|++||||.+|-+ +++.  +.+++.+++..     ....|++ ||.|.+.....-.-..    ....      
T Consensus        12 ~~W~~~~V~~GDTL~~IL~-r~Gl--s~~di~~i~~~~~~~~~l~~Lrp-Gq~l~i~~~~~~~l~~l~~~~~~~~~~~~v   87 (371)
T 3slu_A           12 AYWVQEAVQPGDSLADVLA-RSGM--ARDEIARITEKYGGEADLRHLRA-DQSVHVLVGGDGGAREVQFFTDEDGERNLV   87 (371)
T ss_dssp             CEEEEEECCTTCCHHHHHH-HTTC--CHHHHHHHHTTC------CCBCS-SSEEEEEECTTSCEEEEEEEECCTTEEEEE
T ss_pred             CceEEEEECCCCcHHHHHH-HcCC--CHHHHHHHHHhccccCchhhCCC-CCEEEEEECCCCCeEEEEEEecCCCceeEE
Confidence            4688999999999999997 7875  88888887653     2468999 9999997643210000    0000      


Q ss_pred             -----ccc-------------eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCC----C---CC-CCEEEEcC
Q 047095          114 -----YGL-------------FLTYPIELGENLSTIANMSGLSPELLQSYNRGS----D---FS-SGLVFIPE  160 (188)
Q Consensus       114 -----~~~-------------~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~----~---~~-g~~l~iP~  160 (188)
                           .+.             ...+.+.-.++||..|++.|++.+.+++++.+.    +   ++ |+.+.|..
T Consensus        88 ~i~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~  160 (371)
T 3slu_A           88 ALEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIY  160 (371)
T ss_dssp             EEEEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEE
T ss_pred             EEEecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEE
Confidence                 000             001222338899999999999998888887653    2   34 88776654

>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}

Probab=95.34  E-value=0.027  Score=47.26  Aligned_cols=48  Identities=10%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             cceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCC-------CCC-CCEEEEcCCC
Q 047095          115 GLFLTYPIELGENLSTIANMSGLSPELLQSYNRGS-------DFS-SGLVFIPEKD  162 (188)
Q Consensus       115 ~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~-------~~~-g~~l~iP~~~  162 (188)
                      .....|+|++||||.+|-+++|++..++.+++...       .++ |+.|.+.+..
T Consensus        12 ~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~   67 (371)
T 3slu_A           12 AYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG   67 (371)
T ss_dssp             CEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred             CceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence            45788999999999999999999998888886543       244 9998887653

>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}

Probab=82.20  E-value=0.81  Score=27.31  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=21.4

Q ss_pred             eecCCc----HHHHHHHhCCCHHHHHhhc
Q 047095          122 IELGEN----LSTIANMSGLSPELLQSYN  146 (188)
Q Consensus       122 V~~GDT----l~~IA~~~~vs~~~l~~~N  146 (188)
                      +..|.+    +..||++|||+...|..|=
T Consensus        18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~   46 (59)
T 2glo_A           18 YRNDNDCKGNQRATARKYNIHRRQIQKWL   46 (59)
T ss_dssp             HHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred             HHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence            356778    9999999999999998883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	99.56
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	99.52
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	99.44
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	99.43
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	90.95

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.2e-15  Score=90.58  Aligned_cols=44  Identities=23%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             EEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC-CC-CCEEEEcCC
Q 047095          118 LTYPIELGENLSTIANMSGLSPELLQSYNRGSD-FS-SGLVFIPEK  161 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~-~~-g~~l~iP~~  161 (188)
                      .+|+|++|||||+||++||+++++|++||++.+ +. ||+|.||++
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~~l~~Gq~L~i~vk   48 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK   48 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcccCcCCCEEEEEeC
Confidence            579999999999999999999999999999876 55 999999975

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=1.5e-15  Score=90.37  Aligned_cols=43  Identities=28%  Similarity=0.416  Sum_probs=40.0

Q ss_pred             EEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcC
Q 047095          118 LTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPE  160 (188)
Q Consensus       118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~  160 (188)
                      .+|+|++|||||+||++||+++++|+++|++.+  +. ||.|+||.
T Consensus         2 i~y~V~~GDTL~~IA~~y~v~~~~i~~~N~~~~~~l~~Gq~L~IPg   47 (48)
T d1y7ma2           2 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG   47 (48)
T ss_dssp             EEEECCTTCCHHHHHHHTTSCCCCCCCTSCTTCSSCCTTCEEEETT
T ss_pred             EEEEECCCCCHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCEEEeCC
Confidence            579999999999999999999999999999876  45 99999995

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5e-14  Score=83.50  Aligned_cols=45  Identities=13%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             eEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095           52 FSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV  101 (188)
Q Consensus        52 ~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~  101 (188)
                      .+|+|++|||||+||+ +|+.  ++++|+++|++. +.|++ ||+|.||.
T Consensus         3 v~y~V~~GDTl~~IA~-~y~v--s~~~i~~~N~l~-~~l~~-Gq~L~i~v   47 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAK-RHGV--NIKDVMRWNSDT-ANLQP-GDKLTLFV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHH-HHTC--CHHHHHHHCSCG-GGCCT-TEEEECCC
T ss_pred             EEEEECCCCCHHHHHH-HHCC--CHHHHHHHcCCc-ccCcC-CCEEEEEe
Confidence            5799999999999997 8985  999999999985 46999 99999986

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=1.9e-14  Score=85.48  Aligned_cols=46  Identities=15%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             eEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095           52 FSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV  101 (188)
Q Consensus        52 ~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~  101 (188)
                      ..|+|++|||||+||+ +|+.  ++++|+++|++..+.|++ ||.|.||.
T Consensus         2 i~y~V~~GDTL~~IA~-~y~v--~~~~i~~~N~~~~~~l~~-Gq~L~IPg   47 (48)
T d1y7ma2           2 LTYQVKQGDTLNSIAA-DFRI--STAALLQANPSLQAGLTA-GQSIVIPG   47 (48)
T ss_dssp             EEEECCTTCCHHHHHH-HTTS--CCCCCCCTSCTTCSSCCT-TCEEEETT
T ss_pred             EEEEECCCCCHHHHHH-HhCC--CHHHHHHHcCCCCCCCCC-CCEEEeCC
Confidence            4799999999999997 8985  999999999986667999 99999994

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=90.95  E-value=0.074  Score=29.65  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             eecCCcHHHHHHHhCCCHHHHHhhcC
Q 047095          122 IELGENLSTIANMSGLSPELLQSYNR  147 (188)
Q Consensus       122 V~~GDTl~~IA~~~~vs~~~l~~~N~  147 (188)
                      +..|++...||+.|||+...|-++=+
T Consensus        18 ~~~G~s~~~iA~~~gVSr~TiYry~p   43 (47)
T d1ijwc_          18 LEKGHPRQQLAIIFGIGVSTLYRYFP   43 (47)
T ss_dssp             HHTTCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             HHCCCCHHHHHHHHCcCHHHHHhhCC
Confidence            46799999999999999999987743