Citrus Sinensis ID: 047097
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGT6 | 1031 | LRR receptor-like serine/ | yes | no | 0.934 | 0.401 | 0.453 | 2e-85 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.950 | 0.416 | 0.422 | 4e-84 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.972 | 0.420 | 0.437 | 4e-81 | |
| O22938 | 890 | Leucine-rich repeat recep | no | no | 0.963 | 0.479 | 0.342 | 3e-53 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.923 | 0.348 | 0.316 | 6e-52 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.920 | 0.367 | 0.324 | 3e-51 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.902 | 0.363 | 0.332 | 6e-51 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.911 | 0.476 | 0.320 | 4e-49 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.889 | 0.350 | 0.344 | 4e-49 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.932 | 0.363 | 0.313 | 5e-49 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function desciption |
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Score = 316 bits (809), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/417 (45%), Positives = 266/417 (63%), Gaps = 3/417 (0%)
Query: 30 SNETDRLALLAIKSQLHD--PLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIG 87
SNETD ALL KSQ+ + V +SWN+S C W GV CGRR +RV L+L +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 88 GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSN 147
G +SP +GNLSFLR +NLA+N F IP ++GR L+ L +S N G IP++LS CS
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
L + + +N+L +P+ +G L KL L + N++TG PAS+GNL+SL D N +
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 208 GRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP 266
G I D + +L ++ IA N FSG PP ++NISSLE +SL++N F+G+L D G LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
NLR+L N FTG+IP +L+N S LE + S N SG + + F +L+NL WL + N+L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 327 GTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP 386
G +++ L+FI + NC++LE L NR GELP S+ANLS+T+ + +G+N ISGTIP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 387 PEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+I LVSL L+++ N L+G +P G+L NLQ+++L N + G IPS GN+T L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
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Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 181/428 (42%), Positives = 267/428 (62%), Gaps = 7/428 (1%)
Query: 18 LLLHSHKTICANSNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRV 76
+LL +H ++ETDR ALL KSQ+ D V SSWN+S LC W GV CGR+++RV
Sbjct: 13 MLLETH----GFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRV 68
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T L+L +GG +SP +GNLSFL ++L N F G IP ++G+ LE L + N G
Sbjct: 69 THLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRG 128
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
IP L CS L+ L +D+N L G +P+ +G L L +L ++ N++ G+LP S+GNL+ L
Sbjct: 129 PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLL 188
Query: 197 LAFDVRENILWGRIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255
+ N L G I S + QL + L + N+FSG PP ++N+SSL+++ + N F+G
Sbjct: 189 EQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSG 248
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315
L D G+ LPNL + GN FTGSIP +LSN S LE + + N +G + F + N
Sbjct: 249 RLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPN 307
Query: 316 LSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIA 375
L L + N+LG+ ++ +L+F+ LTNC++LE L RNR G+LP S+ANLS+ + +
Sbjct: 308 LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLD 367
Query: 376 MGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435
+G ISG+IP +I L++L L +D+N L+G +P +G+L NL+ L+L N L G IP+
Sbjct: 368 LGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPA 427
Query: 436 SLGNLTLL 443
+GN+T+L
Sbjct: 428 FIGNMTML 435
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
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Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 191/437 (43%), Positives = 275/437 (62%), Gaps = 6/437 (1%)
Query: 11 LATLSLSLLLHSHKTICANS----NETDRLALLAIKSQLHDPLGVT-SSWNNSMNLCQWT 65
++ L +S+ L +CA + ETD+ ALL KSQ+ + V SWN+S+ LC WT
Sbjct: 13 VSALLVSVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWT 72
Query: 66 GVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLE 125
GV CG +H+RVT +DL + G +SP+VGNLSFLR +NLA+N F G IP ++G L+
Sbjct: 73 GVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQ 132
Query: 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQ 185
L +SNN F G IP LS CS+L L + +N+L +P G L KL L + N++TG+
Sbjct: 133 YLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGK 192
Query: 186 LPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLE 244
PAS+GNL+SL D N + G I + +L+ ++ IA N F+G PPPI+N+SSL
Sbjct: 193 FPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLI 252
Query: 245 VISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304
+S++ N F+G+L D G LPNL+ L N+FTG+IP +LSN S L ++ N +G
Sbjct: 253 FLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTG 312
Query: 305 RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
++ + F RL+NL L + N+LG ++ +LDF+ LTNCS+L+ L N+ G+LP +
Sbjct: 313 KIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFI 372
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
ANLS+ + ++++G N ISG+IP I LVSL L + N LTG +PP +GEL L+ + L
Sbjct: 373 ANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLL 432
Query: 425 GGNFLQGSIPSSLGNLT 441
N L G IPSSLGN++
Sbjct: 433 YSNGLSGEIPSSLGNIS 449
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1 | Back alignment and function description |
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Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 220/456 (48%), Gaps = 29/456 (6%)
Query: 8 FCCLATLSLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGV 67
F C++ L + L S +C + +D L+AI +L GV +N + C W G+
Sbjct: 3 FWCMSILLIVGFL-SKSELC-EAQLSDEATLVAINREL----GVPGWSSNGTDYCTWVGL 56
Query: 68 ICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGL 127
CG + V LDL + G ++ + +L L++++L+ N F G IP G LE L
Sbjct: 57 KCGVNNSFVEMLDLSGLQLRGNVT-LISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFL 115
Query: 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
LS N F G IP + L + N LVGEIP + L +LE + N + G +P
Sbjct: 116 DLSLNRFVGAIPVEFGKLRGLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIP 175
Query: 188 ASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246
+GNLSSL F EN L G I + L + L LL++ N G IP IF L+V+
Sbjct: 176 HWVGNLSSLRVFTAYENDLVGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVL 235
Query: 247 SLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
L++NR TG LP G+ L + N G IP ++ N S L E +N SG +
Sbjct: 236 VLTQNRLTGELPEAVGI-CSGLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEI 294
Query: 307 SVDFSRLKNLSWLNMGINNLGTGTANEL-DFINL-----------------LTNCSKLER 348
+FS+ NL+ LN+ N EL INL L +
Sbjct: 295 VAEFSKCSNLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNK 354
Query: 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408
L + NR G +P + ++ ++ + + +N I G IP EI V L L + RN LTGT
Sbjct: 355 LDLSNNRLNGTIPKELCSMPR-LQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGT 413
Query: 409 IPPEIGELKNLQL-LNLGGNFLQGSIPSSLGNLTLL 443
IPPEIG ++NLQ+ LNL N L GS+P LG L L
Sbjct: 414 IPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKL 449
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 0 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 238/489 (48%), Gaps = 80/489 (16%)
Query: 25 TICANSNETDRLALLAIKSQL-HDPLGVTSSWN--NSMNLCQWTGVICGRRHQRVTRLDL 81
+ S E + AL + K+ + +DPLGV S W S+ C WTG+ C V + L
Sbjct: 21 ALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSL 79
Query: 82 RNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPT- 140
+ + G LSP + NL++L+ ++L +N F G+IP +IG+ L L+L N FSG+IP+
Sbjct: 80 LEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSG 139
Query: 141 -----------------------NLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177
+ + S+L+ + D N L G+IP +G L L+
Sbjct: 140 IWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVA 199
Query: 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRI----DSLVQLRNLLLLDIAFNHFSGTI 233
NH+TG +P SIG L++L D+ N L G+I +L+ L++L+L + N G I
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTE---NLLEGDI 256
Query: 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR-- 291
P I N SSL + L +N+ TG +P + G NL L+ L N T SIP SL ++
Sbjct: 257 PAEIGNCSSLVQLELYDNQLTGKIPAELG-NLVQLQALRIYKNKLTSSIPSSLFRLTQLT 315
Query: 292 ----------------------LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
LE++ N F+G + L+NL+ L +G NN+
Sbjct: 316 HLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGE 375
Query: 330 TANELDFI----------NLLT--------NCSKLERLYFNRNRFEGELPHSVANLSSTI 371
+L + NLLT NC+ L+ L + N+ GE+P ++ T
Sbjct: 376 LPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTF 435
Query: 372 KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431
I++GRN +G IP +I +L L++ N LTGT+ P IG+L+ L++L + N L G
Sbjct: 436 --ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTG 493
Query: 432 SIPSSLGNL 440
IP +GNL
Sbjct: 494 PIPREIGNL 502
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 225/456 (49%), Gaps = 48/456 (10%)
Query: 33 TDRLALLAIKSQLHD-PLGVTSSWNNSMNL-CQWTGVICGRRHQRVTRLDLRNQSIGGTL 90
+D ALL++ P +T SWN S + C W GV C RR Q V L+L + I G
Sbjct: 26 SDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRR-QFVDTLNLSSYGISGEF 84
Query: 91 SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL-- 148
P + +L L+ + L+ NGF G IP Q+G +LE + LS+NSF+G IP L NL
Sbjct: 85 GPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRN 144
Query: 149 IELFVDT----------------------NYLVGEIPAAIGGLFKLERLFIFHNHITGQL 186
+ LF ++ N L G IP+ IG + +L L++ N +G +
Sbjct: 145 LSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPV 204
Query: 187 PASIGNLSSLLAFDVRENILWGRID-SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245
P+S+GN+++L + +N L G + +L L NL+ LD+ N G IP + ++
Sbjct: 205 PSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDT 264
Query: 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
ISLS N+FTG LP G N +LR+ +G IP ++L+ + + N FSGR
Sbjct: 265 ISLSNNQFTGGLPPGLG-NCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGR 323
Query: 306 VSVDFSRLKNLSWLNMGINNLGT------GTANELDFINLLTN------------CSKLE 347
+ + + K++ L + N L G ++L +++L TN L+
Sbjct: 324 IPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQ 383
Query: 348 RLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407
L +N GELP + L + +A+ N +G IP ++ SL L + RN TG
Sbjct: 384 SLQLYQNNLSGELPVDMTELKQLVS-LALYENHFTGVIPQDLGANSSLEVLDLTRNMFTG 442
Query: 408 TIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
IPP + K L+ L LG N+L+GS+PS LG + L
Sbjct: 443 HIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTL 478
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Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 231/484 (47%), Gaps = 84/484 (17%)
Query: 31 NETDRLALLAIKSQLHDPLGVTSSWNN-SMNLCQWTGVICGRRHQR-VTRLDLRNQSIGG 88
NE R+ LL K+ L+D G +SWN N C WTG+ C H R VT +DL ++ G
Sbjct: 25 NEEGRV-LLEFKAFLNDSNGYLASWNQLDSNPCNWTGIAC--THLRTVTSVDLNGMNLSG 81
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
TLSP + L LR +N++ N G IP + LE L L N F G IP L+ L
Sbjct: 82 TLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITL 141
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL--------------- 193
+L++ NYL G IP IG L L+ L I+ N++TG +P S+ L
Sbjct: 142 KKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSG 201
Query: 194 ---------SSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
SL + EN+L G + L +L+NL L + N SG IPP + NIS L
Sbjct: 202 VIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRL 261
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
EV++L EN FTGS+P + G L +++L N TG IP + N I+FS NQ +
Sbjct: 262 EVLALHENYFTGSIPREIG-KLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLT 320
Query: 304 GRVSVDFSRLKNLSW------------------------LNMGINNLGTGTANELDFINL 339
G + +F + NL L++ IN L EL F+
Sbjct: 321 GFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY 380
Query: 340 LTNCSKLERLYFNRNRFEGELP--------HSVANLSS---------------TIKQIAM 376
L + L N+ EG++P SV ++S+ T+ +++
Sbjct: 381 LVD------LQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSL 434
Query: 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436
G N++SG IP +++ SL L + NQLTG++P E+ L+NL L L N+L G+I +
Sbjct: 435 GSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISAD 494
Query: 437 LGNL 440
LG L
Sbjct: 495 LGKL 498
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 225/449 (50%), Gaps = 45/449 (10%)
Query: 7 IFCCLATLSLSLLLHSHKTICANSNETD-RLALLAIKSQLHDPLGVT--------SSWNN 57
+F + LSLL+HS + + D R ALL + + P+ + WN
Sbjct: 10 VFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEF--PINASWHIMNQWRGPWNK 67
Query: 58 SMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLS--PYVGNLSFLRYINLANNGFLGEIP 115
S + C W GV C + +V LD+ N + L + L +LR+++L N GEIP
Sbjct: 68 STDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIP 127
Query: 116 PQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175
+G NLS + L+ L+ N VGEIPA+IG L +L L
Sbjct: 128 SSLG---------------------NLSHLT-LVNLYF--NKFVGEIPASIGNLNQLRHL 163
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIP 234
+ +N +TG++P+S+GNLS L+ ++ N L G+I DS+ L+ L L +A N+ G IP
Sbjct: 164 ILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIP 223
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ N+S+L + L+ N+ G +P G NL LR +S N+ +G+IP+S +N ++L +
Sbjct: 224 SSLGNLSNLVHLVLTHNQLVGEVPASIG-NLIELRVMSFENNSLSGNIPISFANLTKLSI 282
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
S N F+ D S NL + ++ N+ L I LE +Y N
Sbjct: 283 FVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI------PSLESIYLQEN 336
Query: 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414
+F G + + + S+ ++ + +GRNR+ G IP I +L++L L I N TG IPP I
Sbjct: 337 QFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTIS 396
Query: 415 ELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+L NL L+L N L+G +P+ L L +
Sbjct: 397 KLVNLLHLDLSKNNLEGEVPACLWRLNTM 425
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/436 (34%), Positives = 219/436 (50%), Gaps = 42/436 (9%)
Query: 33 TDRLALLAIKSQ-LHDPLGVTSSWNN-SMNLCQWTGVICGRRHQR-------VTRLDLRN 83
+D LL +K++ D L +WN C W GV C + VT LDL +
Sbjct: 35 SDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSS 94
Query: 84 QSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLS 143
++ G +SP +G L L Y+NLA N G+IP +IG LE + L+NN F G+IP ++
Sbjct: 95 MNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEIN 154
Query: 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203
+ S L + N L G +P IG L+ LE L + N++TG LP S+GNL+ L F +
Sbjct: 155 KLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQ 214
Query: 204 NILWGRIDSLV-QLRNLLLLDIA------------------------FNHFSGTIPPPIF 238
N G I + + + NL LL +A N FSG IP I
Sbjct: 215 NDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG 274
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
N++SLE ++L N G +P + G N+ +L++L N G+IP L S++ I+FS
Sbjct: 275 NLTSLETLALYGNSLVGPIPSEIG-NMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFS 333
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
N SG + V+ S++ L L + N L NEL + L N +KL+ + N G
Sbjct: 334 ENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNEL---SKLRNLAKLD---LSINSLTG 387
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418
+P NL+S ++Q+ + N +SG IP + L + NQL+G IPP I + N
Sbjct: 388 PIPPGFQNLTS-MRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN 446
Query: 419 LQLLNLGGNFLQGSIP 434
L LLNLG N + G+IP
Sbjct: 447 LILLNLGSNRIFGNIP 462
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 241/498 (48%), Gaps = 85/498 (17%)
Query: 18 LLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNL--CQWTGVIC------ 69
L++++ A+ ++ + AL A K LHDPLG +SW+ S C W GV C
Sbjct: 12 LVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTNHRVT 71
Query: 70 ----------GRRHQRVT------RLDLRNQSIGGT------------------------ 89
GR R++ +L LR+ S GT
Sbjct: 72 EIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGK 131
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLI 149
L P + NL+ L N+A N GEIP +G L+ L +S+N+FSG IP+ L+ + L
Sbjct: 132 LPPAMRNLTSLEVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQ 189
Query: 150 ELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
L + N L GEIPA++G L L+ L++ N + G LP++I N SSL+ EN + G
Sbjct: 190 LLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGV 249
Query: 210 IDSLV-QLRNLLLLDIAFNHFSGTIPPPIFNISS-------------------------- 242
I + L L +L ++ N+FSGT+P +F +S
Sbjct: 250 IPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTG 309
Query: 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L+V+ L ENR +G P+ N+ +L+ L +GN F+G IP + N RLE ++ + N
Sbjct: 310 LQVLDLQENRISGRFPLWL-TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSL 368
Query: 303 SGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH 362
+G + V+ + +L L+ N+L L ++ L+ L RN F G +P
Sbjct: 369 TGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMK------ALKVLSLGRNSFSGYVPS 422
Query: 363 SVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLL 422
S+ NL ++++ +G N ++G+ P E+ L SL+ L + N+ +G +P I L NL L
Sbjct: 423 SMVNLQQ-LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFL 481
Query: 423 NLGGNFLQGSIPSSLGNL 440
NL GN G IP+S+GNL
Sbjct: 482 NLSGNGFSGEIPASVGNL 499
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| 224119022 | 1021 | predicted protein [Populus trichocarpa] | 0.984 | 0.427 | 0.472 | 2e-98 | |
| 224081190 | 1011 | predicted protein [Populus trichocarpa] | 0.975 | 0.427 | 0.476 | 4e-98 | |
| 255575908 | 988 | serine-threonine protein kinase, plant-t | 0.977 | 0.438 | 0.475 | 4e-97 | |
| 224119102 | 1007 | predicted protein [Populus trichocarpa] | 0.977 | 0.429 | 0.455 | 6e-97 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.939 | 0.4 | 0.478 | 2e-96 | |
| 255575904 | 834 | serine-threonine protein kinase, plant-t | 0.923 | 0.490 | 0.480 | 2e-96 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.932 | 0.216 | 0.479 | 1e-95 | |
| 224116466 | 1008 | predicted protein [Populus trichocarpa] | 0.968 | 0.425 | 0.461 | 2e-95 | |
| 255585471 | 963 | serine-threonine protein kinase, plant-t | 0.959 | 0.441 | 0.483 | 2e-95 | |
| 224115346 | 1017 | predicted protein [Populus trichocarpa] | 0.934 | 0.407 | 0.487 | 2e-94 |
| >gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 209/442 (47%), Positives = 289/442 (65%), Gaps = 6/442 (1%)
Query: 7 IFC-CLATLSLSLLLHSHKTICAN-SNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQ 63
+FC S LL C++ +NETD LAL+ K+++ DPLG+ SSWN++++ CQ
Sbjct: 1 MFCSAFCFRSFVFLLSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQ 60
Query: 64 WTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDM 123
W GV CGRRHQRV L L++ + GT+SP++GNLSFLR ++L NN F EIPPQ+GR
Sbjct: 61 WHGVSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRS 120
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L+ L NNS SG IP ++S CSNLI + ++ N L GEIP +G L KL+ L + N +T
Sbjct: 121 LQIFSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLT 180
Query: 184 GQLPASIGNLSSLLAFDVREN-ILWGRIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNIS 241
G +P S+GNLSSL + +N IL+G + S L +L+NL +L++ N SG IPP IFN+S
Sbjct: 181 GTIPPSLGNLSSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLS 240
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
SL + + N F G+LP D G++LPNL S N FTGSIPVS+SNAS +E+++ S N
Sbjct: 241 SLTALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNN 300
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361
+G V +L L++ + N+LG+G AN+L F++ LTN + LE L RN F GELP
Sbjct: 301 LTGEVPT-LEKLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELP 359
Query: 362 HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQL 421
++NLS+ + I++ N I G+IP I KLV+L + N+++G IP IGEL+NL+
Sbjct: 360 KQISNLSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEG 419
Query: 422 LNLGGNFLQGSIPSSLGNLTLL 443
L L N L G IPSS+GNLT L
Sbjct: 420 LVLDYNNLSGRIPSSVGNLTKL 441
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 212/445 (47%), Positives = 283/445 (63%), Gaps = 13/445 (2%)
Query: 4 SISIFCCL----ATLSLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSM 59
S IFC L LS S LH NETDRL+LLA K+Q+ DPL SSWN S
Sbjct: 7 SSCIFCPLLLLIIQLSFSFSLHE-------GNETDRLSLLAFKAQITDPLDALSSWNAST 59
Query: 60 NLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIG 119
+ C+W+GVICG RHQR+ L+L++ + G LSP++GNLSFLR +NL N F +IP ++G
Sbjct: 60 HFCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELG 119
Query: 120 RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH 179
R L+ LVL NN+FSG IP N+S CSNL+ L + +N L G+IPA +G L KL +
Sbjct: 120 RLFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQG 179
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
N++ G +P+S GNLSS+ F +N L G I +SL L+ L +A N SGTIP I
Sbjct: 180 NNLVGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSIC 239
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
NISSL +SL +N+ GSLP D G+NLPNL L N N+ G IP +LSNAS++ +++ S
Sbjct: 240 NISSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLS 299
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
N +G++ D + L +L L + N+LG G ++L F+ L N + LE L N N F G
Sbjct: 300 YNNLTGKIP-DLASLPDLQKLLVHHNDLGNGEEDDLSFLYTLANSTNLESLGINDNNFGG 358
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418
LP V+N S+ +K I GRN+I G+IP EI L+SL+ L+++ NQL G IP IG+L+N
Sbjct: 359 VLPEIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSLETNQLHGIIPSSIGKLQN 418
Query: 419 LQLLNLGGNFLQGSIPSSLGNLTLL 443
L L L N + GSIPSSLGN+T L
Sbjct: 419 LAALYLNENKISGSIPSSLGNITSL 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 208/437 (47%), Positives = 281/437 (64%), Gaps = 4/437 (0%)
Query: 7 IFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWT 65
+ LS ++L + AN NETDRLALL K ++ DPLG+ SSWN+S++ CQW
Sbjct: 20 VLAIFQLLSFAVLPAAFAMRSAN-NETDRLALLEFKDKIADDPLGMMSSWNSSLHFCQWH 78
Query: 66 GVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLE 125
GV CGRRHQRVT LDL + + G++SPYVGNLSFLR + L NN F +IPPQ G L+
Sbjct: 79 GVTCGRRHQRVTMLDLGSLKLSGSISPYVGNLSFLRKLYLENNSFSHDIPPQSGHLRRLQ 138
Query: 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQ 185
L L NNSF G IP N+S CSNL+ L++D N LVG+IP+ + L KL+ F N++ G
Sbjct: 139 ILSLYNNSFGGEIPPNISACSNLVYLYLDGNKLVGKIPSQLTSLMKLKEFFFGRNNLIGT 198
Query: 186 LPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLE 244
+P S+GNLSSL N L G + +SL +L NL L + N FSGTIP +FNISS+
Sbjct: 199 IPPSLGNLSSLWTLSGDTNKLHGVLPESLGRLTNLKYLALFENRFSGTIPSSVFNISSIV 258
Query: 245 VISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304
I + N G+LP+ G++LP L+ +S + N FTGSIP S+SNAS L E S N +G
Sbjct: 259 HIDVEGNHLQGTLPMSLGISLPQLQFISISSNQFTGSIPTSISNASNLANFEISANNLTG 318
Query: 305 RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
V +L NLS+L++G+N+LG+G A++L F+ LTN + L+ L + F G+LP ++
Sbjct: 319 NVP-SLEKLNNLSFLSIGLNHLGSGRADDLKFLADLTNATALQILNIGMDNFGGKLPENI 377
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
ANLS ++ + N++ G IP I LV+LN+L N+ +GTIP IG+LKNL+ L L
Sbjct: 378 ANLSKKLEIFFINNNQLHGNIPAGIEVLVNLNFLYASWNKFSGTIPSSIGKLKNLRELYL 437
Query: 425 GGNFLQGSIPSSLGNLT 441
N G+IPSSL NLT
Sbjct: 438 NNNNFLGNIPSSLANLT 454
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 199/437 (45%), Positives = 280/437 (64%), Gaps = 4/437 (0%)
Query: 7 IFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWT 65
+FC A + L LL + + NETDRLALL KS++ HDPLG+ WN+S++ C W
Sbjct: 9 VFCPHAFVLL-LLCFTSSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWF 67
Query: 66 GVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLE 125
GV C ++HQRV LDL++ + G++SPY+GNLSFLR + L +N F EIP QIG L+
Sbjct: 68 GVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLHRLQ 127
Query: 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQ 185
L L NNSF+G IP ++S NL+ L +D N L GEIP G KL L+I N++ G
Sbjct: 128 ILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGT 187
Query: 186 LPASIGNLSSLLAFDVRENILWGRIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLE 244
+P S+GN+SSL + +N L+G + + L +L NL +L + N FSGTIPP + N+SSL
Sbjct: 188 IPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLR 247
Query: 245 VISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304
+ N F G+LP D G++LPNL S N FTGS+PVS+SN S LEM+E + N+ G
Sbjct: 248 TFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLELNLNKLRG 307
Query: 305 RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
++ +L+ L + + NNLG+G AN+L F++ LTN + LE L +N F+G+LP +
Sbjct: 308 KMP-SLEKLQRLLSITIASNNLGSGEANDLSFLSSLTNATNLEELIITQNNFQGQLPPQI 366
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
+NLS+T++ + + N + G+IP I L+SLN + N L+G IP IG+L+NL++L L
Sbjct: 367 SNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDFEVQNNHLSGIIPSTIGKLQNLEILGL 426
Query: 425 GGNFLQGSIPSSLGNLT 441
N G IPSSLGNLT
Sbjct: 427 ALNNFSGDIPSSLGNLT 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 279/418 (66%), Gaps = 2/418 (0%)
Query: 28 ANSNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSI 86
++ NETDRLALLAIK+Q+ DPLG+T+SWN+S++ C WTGV CG RHQRV L+L + +
Sbjct: 34 SHRNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHL 93
Query: 87 GGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCS 146
G+LSP +GNL+FL +NL N F G+IP ++GR L L L+NNSFSG IP NLSRCS
Sbjct: 94 VGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCS 153
Query: 147 NLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
NL+ + N L+G IP+ +G K+ R+ + +N++TG +P S+GNL+S+ + N L
Sbjct: 154 NLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHL 213
Query: 207 WGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNL 265
G I +L QL+ L + + N FSG IP ++N+SSLEV SL N+ GSLP D L
Sbjct: 214 EGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTL 273
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325
PNL+ L+ N+FTGS+P SLSNAS L + + + F+G+VS+DF + NL L + N
Sbjct: 274 PNLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNP 333
Query: 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385
LG G A++L F+N L C L+ L + ++F G LP+S+ANLS+ + ++ + N++SGTI
Sbjct: 334 LGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTI 393
Query: 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
PP I LV+L L + N TG+IP IG L+ L ++L N L G IPSSLGN+T L
Sbjct: 394 PPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRL 451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575904|ref|XP_002528849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531700|gb|EEF33523.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/412 (48%), Positives = 269/412 (65%), Gaps = 3/412 (0%)
Query: 31 NETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGT 89
N+TDRLALL K ++ DPLGV SSWN S++ C+W G+ C RRHQRVTRLDL + + G+
Sbjct: 43 NQTDRLALLDFKDKITDDPLGVVSSWNRSLHFCKWYGITCSRRHQRVTRLDLSSLKLSGS 102
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLI 149
+SPYVGNLSFLR + L NN F EIPPQIG L+ L L NNS SG IP+N+S CSNL+
Sbjct: 103 ISPYVGNLSFLRELYLENNSFSYEIPPQIGHLRRLQSLSLYNNSISGEIPSNISACSNLV 162
Query: 150 ELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
L++D N LVGEIP + L KLE F+ N++ G +P S+ NLSS+ F N L G
Sbjct: 163 YLYLDGNNLVGEIPEELTSLMKLEYFFLGKNNLIGTIPQSLRNLSSIDTFSAYRNKLHGV 222
Query: 210 I-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268
+ +S +L NL +L + N FSG IP IFN+SS+E I + N G+LP+ ++LP+L
Sbjct: 223 LPESFGRLMNLRILTLYDNQFSGNIPSSIFNLSSIESIDVGINHLHGTLPMTLVISLPHL 282
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
S N FTGSIP S+SNAS LE+++ ++N +G V +L + +L + N+LG
Sbjct: 283 NFFSIGQNQFTGSIPTSISNASNLEILQLNQNSLTGTVP-SLEKLNKMFFLGIAGNHLGG 341
Query: 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE 388
G N+L F++ LTN + L L N N F G+LP ++N S ++ +A+ N+I G +P
Sbjct: 342 GRTNDLKFLSDLTNATALRLLNINDNNFGGKLPEHLSNFSKKLELLALNDNQIHGNLPAG 401
Query: 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440
I LV+L L++ N+L+GTIP IG+LKNL+ L + N GSIPSSLGNL
Sbjct: 402 IEFLVNLTILSVSSNKLSGTIPSSIGKLKNLRELYMHDNNFSGSIPSSLGNL 453
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/415 (47%), Positives = 276/415 (66%), Gaps = 2/415 (0%)
Query: 31 NETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGT 89
NETDRLALLAIK+Q+ DPLG+T+SWN+S++ C WTGV CG RHQRV L+L + + G+
Sbjct: 68 NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGS 127
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLI 149
LSP +GNL+FL +NL N F G+IP ++GR L L L+NNSFSG IP NLSRCSNL+
Sbjct: 128 LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 187
Query: 150 ELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
+ N L+G IP+ +G K+ R+ + +N++TG +P S+GNL+S+ + N L G
Sbjct: 188 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 247
Query: 210 I-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268
I +L QL+ L + + N FSG IP ++N+SSLEV SL N+ GSLP D LPNL
Sbjct: 248 IPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNL 307
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
+ L+ N+FTG +P SLSNAS L + + + F+G+VS+DF + NL L + N LG
Sbjct: 308 QVLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGK 367
Query: 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE 388
G A++L F+N L C L+ L + ++F G LP+S+ANLS+ + ++ + N++SGTIPP
Sbjct: 368 GEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPG 427
Query: 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
I LV+L L + N TG+IP IG L+ L ++L N L G IPSSLGN+T L
Sbjct: 428 IGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/431 (46%), Positives = 277/431 (64%), Gaps = 2/431 (0%)
Query: 14 LSLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH 73
LS ++ HS A +E D+L+LLA K+Q+ DP SSWN S++ CQW+GV CGR+H
Sbjct: 9 LSFQIIQHSFSFSLARGSEIDKLSLLAFKAQISDPTTKLSSWNESLHFCQWSGVKCGRQH 68
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
QRV LDL + + G+LSP +GNLSFLR ++L NN F IP +IGR L+ L+L NNS
Sbjct: 69 QRVIELDLHSSQLVGSLSPSIGNLSFLRLLSLENNSFTNAIPQEIGRLVRLQTLILGNNS 128
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
FSG IP+N+S CSNL++L ++ N L G +PA +G L KL+ N++ G++P S NL
Sbjct: 129 FSGEIPSNISHCSNLLKLNLEGNNLTGNLPAGLGSLSKLQVFSFRKNNLDGKIPLSFENL 188
Query: 194 SSLLAFDVRENILWGRIDSLV-QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENR 252
SS++ D N + G I S + +L+ L + N+ SGTIP ++NISSL SL N+
Sbjct: 189 SSIIEIDGTLNNIQGGIPSSIGKLKTLNFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQ 248
Query: 253 FTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312
F G+LP + G+ LPNL+ L + N +G +P +L NA++ I S N+F+G+V +
Sbjct: 249 FHGTLPPNIGLTLPNLQYLGIHDNRLSGQLPATLINATKFTEIYLSYNKFTGKVPT-LAI 307
Query: 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK 372
+ NL L+M N LG G ++L F+ L+N SKLE LY + N F G LP ++N S+ +K
Sbjct: 308 MPNLRILSMEENGLGKGEDDDLSFLYTLSNSSKLEDLYIDNNNFGGVLPDIISNFSTKLK 367
Query: 373 QIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432
Q+A G N+I GTIP I LVSL+ L ++ N LTG+IP IG+L+NL L N L GS
Sbjct: 368 QMAFGSNQIRGTIPDGIGNLVSLDTLGLEANHLTGSIPSSIGKLQNLADFFLNENKLSGS 427
Query: 433 IPSSLGNLTLL 443
IPSSLGN+T L
Sbjct: 428 IPSSLGNITSL 438
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 271/428 (63%), Gaps = 3/428 (0%)
Query: 16 LSLLLHSHKTICANSNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQ 74
L L S + + NETD ALL KS++ HDP V SWN +++ CQW GV CG H+
Sbjct: 22 LILCFSSTTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVTCGLLHR 81
Query: 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134
RVT LDL + I G++SPY+GNLSFLR +N+ NN F EIP QIG LE L L+NNS
Sbjct: 82 RVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELRLNNNSV 141
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLS 194
G IPTN+SRCSNL+ + + N L G +P +G L L+ L IF N +TG +P S+GNLS
Sbjct: 142 GGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPHSLGNLS 201
Query: 195 SLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
L + EN + G + +SL LRNL L + N SGTIP +FN+SS+ + + EN F
Sbjct: 202 QLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLDIGENNF 261
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
G+LP D G LPN+R + + N FTG IPVSLSNA+ LE + +N +G V ++L
Sbjct: 262 HGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLSNATNLESLLLLQNNLTGEVP-SLAKL 320
Query: 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQ 373
L ++ NNLGTG A++L F++ LTN + LE L N N F G LP S+ANLS+T++
Sbjct: 321 DRLRVFSLTSNNLGTGKADDLSFLHSLTNTTALEELGVNGNNFGGMLPDSIANLSTTLRI 380
Query: 374 IAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSI 433
+ + NRI G+IP I LVSL + NQL+G IP IG+L+NL +L L N L G I
Sbjct: 381 LLLDNNRIIGSIPSGIENLVSLEDFEVWNNQLSGFIPDSIGKLQNLVVLALNSNMLSGHI 440
Query: 434 PSSLGNLT 441
PSSLGNLT
Sbjct: 441 PSSLGNLT 448
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 203/416 (48%), Positives = 285/416 (68%), Gaps = 2/416 (0%)
Query: 30 SNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGG 88
SN TDRLALL KS++ HDP + SWN+S++ CQW GV CGRRH+RVT L L + + G
Sbjct: 35 SNFTDRLALLDFKSKIIHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVG 94
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
++SP +GNLSFL ++L+NN G+IP +GR L+ LVL+NNSF G IP NLS CS L
Sbjct: 95 SISPALGNLSFLWGLDLSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKL 154
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
L + +N LVG+IPA + L KLE+L I N+++G +P IGNL+SL + N G
Sbjct: 155 DYLGLASNNLVGKIPAELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQG 214
Query: 209 RI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN 267
RI D+L QL+NL L + N SGTIP PI+N+S+L ++SLSEN+ G LP D GV+LPN
Sbjct: 215 RIPDTLGQLKNLESLGLGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPN 274
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L+ + N F+GSIP+S+SN+S L+++E N FSG++SV+F LK+L+ +++ N +G
Sbjct: 275 LQYIQIRANQFSGSIPLSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMG 334
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
+G EL F++ L NC+ L + N FEG LP+S+ NLS+ + + +G+N++ G I
Sbjct: 335 SGEPGELSFLDSLINCTSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHS 394
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
I L++LN L ++ NQL+G IP +IG+L+ LQ +L N L G IPSS+GNLTLL
Sbjct: 395 GIGNLINLNTLGLEFNQLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLL 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.934 | 0.401 | 0.436 | 3.3e-86 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.939 | 0.405 | 0.431 | 4.3e-86 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.932 | 0.408 | 0.408 | 2e-81 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.934 | 0.410 | 0.408 | 1.1e-78 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.934 | 0.409 | 0.391 | 1.3e-75 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.925 | 0.4 | 0.396 | 1.4e-71 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.769 | 0.419 | 0.380 | 5.9e-57 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.920 | 0.347 | 0.318 | 4.2e-50 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.855 | 0.337 | 0.329 | 7.9e-50 | |
| TAIR|locus:2054421 | 890 | AT2G41820 [Arabidopsis thalian | 0.891 | 0.443 | 0.327 | 1.2e-49 |
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 182/417 (43%), Positives = 256/417 (61%)
Query: 30 SNETDRLALLAIKSQL--HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIG 87
SNETD ALL KSQ+ ++ V +SWN+S C W GV CGRR +RV L+L +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 88 GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSN 147
G +SP +GNLSFLR +NLA+N F IP ++GR L+ L +S N G IP++LS CS
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
L + + +N+L +P+ +G L KL L + N++TG PAS+GNL+SL D N +
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 208 GRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP 266
G I D + +L ++ IA N FSG PP ++NISSLE +SL++N F+G+L D G LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
NLR+L N FTG+IP +L+N S LE + S N SG + + F +L+NL WL + N+L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 327 GTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP 386
G +++ L+FI + NC++LE L NR GELP S+ANLS+T+ + +G+N ISGTIP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 387 PEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
+I LVSL L+++ N L+G +P G+ IPS GN+T L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 182/422 (43%), Positives = 260/422 (61%)
Query: 26 ICANS----NETDRLALLAIKSQLHDPLGVT-SSWNNSMNLCQWTGVICGRRHQRVTRLD 80
+CA + ETD+ ALL KSQ+ + V SWN+S+ LC WTGV CG +H+RVT +D
Sbjct: 28 VCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVD 87
Query: 81 LRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPT 140
L + G +SP+VGNLSFLR +NLA+N F G IP ++G L+ L +SNN F G IP
Sbjct: 88 LGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPV 147
Query: 141 NLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200
LS CS+L L + +N+L +P G L KL L + N++TG+ PAS+GNL+SL D
Sbjct: 148 VLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLD 207
Query: 201 VRENILWGRIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
N + G I + +L+ ++ IA N F+G PPPI+N+SSL +S++ N F+G+L
Sbjct: 208 FIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRP 267
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319
D G LPNL+ L N+FTG+IP +LSN S L ++ N +G++ + F RL+NL L
Sbjct: 268 DFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLL 327
Query: 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379
+ N+LG ++ +LDF+ LTNCS+L+ L N+ G+LP +ANLS+ + ++++G N
Sbjct: 328 GLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGN 387
Query: 380 RISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGN 439
ISG+IP I LVSL L + N LTG +PP +GE IPSSLGN
Sbjct: 388 LISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGN 447
Query: 440 LT 441
++
Sbjct: 448 IS 449
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 170/416 (40%), Positives = 252/416 (60%)
Query: 30 SNETDRLALLAIKSQL-HDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGG 88
++ETDR ALL KSQ+ D V SSWN+S LC W GV CGR+++RVT L+L +GG
Sbjct: 21 TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGG 80
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
+SP +GNLSFL ++L N F G IP ++G+ LE L + N G IP L CS L
Sbjct: 81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L +D+N L G +P+ +G L L +L ++ N++ G+LP S+GNL+ L + N L G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 209 RIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN 267
I S + QL + L + N+FSG PP ++N+SSL+++ + N F+G L D G+ LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L + GN FTGSIP +LSN S LE + + N +G + F + NL L + N+LG
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLG 319
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
+ ++ +L+F+ LTNC++LE L RNR G+LP S+ANLS+ + + +G ISG+IP
Sbjct: 320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
+I L++L L +D+N L+G +P +G+ IP+ +GN+T+L
Sbjct: 380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTML 435
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 170/416 (40%), Positives = 248/416 (59%)
Query: 30 SNETDRLALLAIKSQLHDPL-GVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGG 88
++E+DR ALL IKSQ+ + S+WNNS LC W V CGR+H+RVTRLDL +GG
Sbjct: 21 TDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGG 80
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
+SP +GNLSFL Y++L+NN F G IP ++G L+ L + N G IP +LS CS L
Sbjct: 81 VISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRL 140
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L + +N L +P+ +G L KL L++ N + G+ P I NL+SL+ ++ N L G
Sbjct: 141 LYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEG 200
Query: 209 RI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN 267
I D + L ++ L + N+FSG PP +N+SSLE + L N F+G+L D G LPN
Sbjct: 201 EIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
+ +LS +GN TG+IP +L+N S LEM +N+ +G +S +F +L+NL +L + N+LG
Sbjct: 261 IHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLG 320
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
+ + +L F++ LTNCS L L + NR G LP S+ N+S+ + + + N I G+IP
Sbjct: 321 SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPH 380
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
+I L+ L L + N LTG +P +G IPS +GNLT L
Sbjct: 381 DIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQL 436
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 163/416 (39%), Positives = 248/416 (59%)
Query: 30 SNETDRLALLAIKSQLHD-PLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGG 88
++ETDR ALL KSQ+ + V SSWNNS LC W V CGR+H+RVT L+L +GG
Sbjct: 21 TDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGG 80
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
+SP +GN+SFL ++L++N F G IP ++G LE L ++ NS G IP LS CS L
Sbjct: 81 IVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRL 140
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L + +N L +P+ +G L KL L + N++ G+LP S+GNL+SL + +N + G
Sbjct: 141 LNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEG 200
Query: 209 RI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN 267
+ D L +L ++ L ++ N F G PP I+N+S+LE + L + F+GSL D G LPN
Sbjct: 201 EVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
+R+L+ N+ G+IP +LSN S L+ ++N +G + +F ++ +L +L++ N LG
Sbjct: 261 IRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLG 320
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
+ T +L+FI+ LTNC+ L+ L R G LP S+AN+S+ + + + N G+IP
Sbjct: 321 SYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQ 380
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
+I L+ L L + +N LTG +P +G+ IPS +GNLT L
Sbjct: 381 DIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQL 436
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 166/419 (39%), Positives = 244/419 (58%)
Query: 34 DRLALLAIKSQLHDPLGVT-SSWNNSMN--LCQWTGVICGRRHQR----VTRLDLRNQSI 86
D LALL+ KS L G + +SWN S + C W GV+CGRR +R V +L LR+ ++
Sbjct: 32 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNL 91
Query: 87 GGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCS 146
G +SP +GNLSFLR ++L +N GEIPP++ R L+ L LS+NS G+IP + C+
Sbjct: 92 SGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACT 151
Query: 147 NLIELFVDTNYLVGEIPAAIGGLFK-LERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
L L + N L G IP IG K L L+++ N ++G++P+++GNL+SL FD+ N
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211
Query: 206 LWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVN 264
L G I SL QL +LL +++ N+ SG IP I+N+SSL S+ EN+ G +P +
Sbjct: 212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKT 271
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324
L L + N F G IP S++NAS L +I+ N FSG ++ F RL+NL+ L + N
Sbjct: 272 LHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRN 331
Query: 325 NLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT 384
T ++ FI+ LTNCSKL+ L N G LP+S +NLS+++ +A+ N+I+G+
Sbjct: 332 LFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGS 391
Query: 385 IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
IP +I L+ L L + N G++P +G SIP ++GNLT L
Sbjct: 392 IPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTEL 450
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 130/342 (38%), Positives = 193/342 (56%)
Query: 103 INLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI 162
+ L ++ G I P +G L L LS+N SG IP LSR S L +L ++ N L GEI
Sbjct: 83 LRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEI 142
Query: 163 PAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLL 221
PAA+G L L L + +N ++G +P+S+G L+ L + EN L G I S QLR L
Sbjct: 143 PAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSF 202
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
L +AFN+ SG IP PI+NISSL + + N+ +G+LP + NLP+L+++ N F G
Sbjct: 203 LSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGR 262
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341
IP S+ NAS + + N FSG V + R++NL L + N+ F+ LT
Sbjct: 263 IPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALT 322
Query: 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401
NCS L+ + +F G LP SV+NLSS++ +++ N+ISG++P +I LV+L +L++
Sbjct: 323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382
Query: 402 RNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
N LTG++P + S+P ++GNLT L
Sbjct: 383 NNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQL 424
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 4.2e-50, P = 4.2e-50
Identities = 134/421 (31%), Positives = 208/421 (49%)
Query: 26 ICANSNETDRLALLAIKSQL-HDPLGVTSSWN--NSMNLCQWTGVICGRRHQRVTRLDLR 82
+ S E + AL + K+ + +DPLGV S W S+ C WTG+ C V + L
Sbjct: 22 LAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLL 80
Query: 83 NQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNL 142
+ + G LSP + NL++L+ ++L +N F G+IP +IG+ L L+L N FSG+IP+ +
Sbjct: 81 EKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGI 140
Query: 143 SRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202
N+ L + N L G++P I L + +N++TG++P +G+L L F
Sbjct: 141 WELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAA 200
Query: 203 ENILWGRID-SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDT 261
N L G I S+ L NL LD++ N +G IP N+ +L+ + L+EN G +P +
Sbjct: 201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260
Query: 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321
G N +L QL N TG IP L N +L+ + +N+ + + RL L+ L +
Sbjct: 261 G-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319
Query: 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRI 381
N+L + E+ F+ LE L + N F GE P S+ NL + + + +G N I
Sbjct: 320 SENHLVGPISEEIGFLE------SLEVLTLHSNNFTGEFPQSITNLRN-LTVLTVGFNNI 372
Query: 382 SGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLT 441
SG +P ++ L +L L+ N LTG IP I IP G +
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN 432
Query: 442 L 442
L
Sbjct: 433 L 433
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 7.9e-50, P = 7.9e-50
Identities = 131/397 (32%), Positives = 204/397 (51%)
Query: 28 ANSNETDRLALLAIKSQ-LHDPLGVTSSWNN-SMNLCQWTGVICGRRHQR-------VTR 78
+ S +D LL +K++ D L +WN C W GV C + VT
Sbjct: 30 SESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTS 89
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
LDL + ++ G +SP +G L L Y+NLA N G+IP +IG LE + L+NN F G+I
Sbjct: 90 LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P +++ S L + N L G +P IG L+ LE L + N++TG LP S+GNL+ L
Sbjct: 150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209
Query: 199 FDVRENILWGRIDSLV-QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257
F +N G I + + + NL LL +A N SG +P I + L+ + L +N+F+G +
Sbjct: 210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269
Query: 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
P D G NL +L L+ GN+ G IP + N L+ + +NQ +G + + +L +
Sbjct: 270 PKDIG-NLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVM 328
Query: 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377
++ N L EL I S+L LY +N+ G +P+ ++ L + K + +
Sbjct: 329 EIDFSENLLSGEIPVELSKI------SELRLLYLFQNKLTGIIPNELSKLRNLAK-LDLS 381
Query: 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414
N ++G IPP + L S+ L + N L+G IP +G
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLG 418
|
|
| TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 134/409 (32%), Positives = 195/409 (47%)
Query: 33 TDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSP 92
+D L+AI +L GV +N + C W G+ CG + V LDL + G ++
Sbjct: 26 SDEATLVAINREL----GVPGWSSNGTDYCTWVGLKCGVNNSFVEMLDLSGLQLRGNVT- 80
Query: 93 YVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152
+ +L L++++L+ N F G IP G LE L LS N F G IP + L
Sbjct: 81 LISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFN 140
Query: 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-D 211
+ N LVGEIP + L +LE + N + G +P +GNLSSL F EN L G I +
Sbjct: 141 ISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPN 200
Query: 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQL 271
L + L LL++ N G IP IF L+V+ L++NR TG LP G+ L +
Sbjct: 201 GLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGI-CSGLSSI 259
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTA 331
N G IP ++ N S L E +N SG + +FS+ NL+ LN+ N
Sbjct: 260 RIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIP 319
Query: 332 NELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391
EL L N L+ L + N GE+P S S + ++ + NR++GTIP E+
Sbjct: 320 TEL---GQLIN---LQELILSGNSLFGEIPKSFLG-SGNLNKLDLSNNRLNGTIPKELCS 372
Query: 392 LVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNL 440
+ L +L +D+N + G IP EIG +IP +G +
Sbjct: 373 MPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRM 421
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 443 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-57 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-54 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-41 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-15 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-13 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 3e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 2e-57
Identities = 126/390 (32%), Positives = 207/390 (53%), Gaps = 34/390 (8%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
LDL + G + + NL+ L ++ LA+N +G+IP ++G+ L+ + L N+ SG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P + ++L L + N L G IP+++G L L+ LF++ N ++G +P SI +L L++
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 199 FDVRENILWGRIDSLV-QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257
D+ +N L G I LV QL+NL +L + N+F+G IP + ++ L+V+ L N+F+G +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL-EMIEFS------------------ 298
P + G + NL L + NN TG IP L ++ L ++I FS
Sbjct: 349 PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407
Query: 299 -----RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353
N FSG + +F++L + +L++ NNL G N + + L+ L R
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL-QGRINSRKW-----DMPSLQMLSLAR 461
Query: 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI 413
N+F G LP S S ++ + + RN+ SG +P ++ L L L + N+L+G IP E+
Sbjct: 462 NKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519
Query: 414 GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
K L L+L N L G IP+S + +L
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-54
Identities = 137/419 (32%), Positives = 216/419 (51%), Gaps = 15/419 (3%)
Query: 27 CANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSI 86
++ E + LL+ KS ++DPL S+WN+S ++C W G+ C RV +DL ++I
Sbjct: 25 MLHAEELE--LLLSFKSSINDPLKYLSNWNSSADVCLWQGITC-NNSSRVVSIDLSGKNI 81
Query: 87 GGTLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSFSGTIPTNLSRC 145
G +S + L +++ INL+NN G IP I L L LSNN+F+G+IP
Sbjct: 82 SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--I 139
Query: 146 SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
NL L + N L GEIP IG L+ L + N + G++P S+ NL+SL + N
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199
Query: 206 LWGRIDS-LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVN 264
L G+I L Q+++L + + +N+ SG IP I ++SL + L N TG +P G N
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-N 258
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324
L NL+ L N +G IP S+ + +L ++ S N SG + +L+NL L++ N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 325 NLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT 384
N TG LT+ +L+ L N+F GE+P ++ + + + + N ++G
Sbjct: 319 NF-TGKIPV-----ALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGE 371
Query: 385 IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
IP + +L L + N L G IP +G ++L+ + L N G +PS L L+
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 1e-47
Identities = 131/409 (32%), Positives = 204/409 (49%), Gaps = 33/409 (8%)
Query: 32 ETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRHQRVTRLDLRNQSIGGT 89
+T L+ + + D + TSS +NL +TG I + LDL N + G
Sbjct: 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE 155
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLI 149
+ +G+ S L+ ++L N +G+IP + LE L L++N G IP L + +L
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215
Query: 150 ELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
+++ N L GEIP IGGL L L + +N++TG +P+S+GNL
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK--------------- 260
Query: 210 IDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
NL L + N SG IPP IF++ L + LS+N +G +P + + L NL
Sbjct: 261 --------NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLE 311
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
L NNFTG IPV+L++ RL++++ N+FSG + + + NL+ L++ NNL TG
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TG 370
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI 389
E L + L +L N EGE+P S+ S ++++ + N SG +P E
Sbjct: 371 EIPE-----GLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEF 424
Query: 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438
KL + +L I N L G I ++ +LQ+L+L N G +P S G
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-41
Identities = 115/361 (31%), Positives = 183/361 (50%), Gaps = 14/361 (3%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
LDL ++ G + +GNL L+Y+ L N G IPP I L L LS+NS SG I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P + + NL L + +N G+IP A+ L +L+ L ++ N +G++P ++G ++L
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360
Query: 199 FDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257
D+ N L G I + L NL L + N G IP + SL + L +N F+G L
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420
Query: 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
P + LP + L + NN G I + L+M+ +RN+F G + D K L
Sbjct: 421 PSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLE 478
Query: 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM- 376
L++ N +L + S+L +L + N+ GE+P LSS K +++
Sbjct: 479 NLDLSRNQFSGAVPRKL------GSLSELMQLKLSENKLSGEIPDE---LSSCKKLVSLD 529
Query: 377 -GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435
N++SG IP ++ L+ L + +NQL+G IP +G +++L +N+ N L GS+PS
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
Query: 436 S 436
+
Sbjct: 590 T 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 37 ALLAIKSQLHDPLGVTSSWNNSMNLCQ---WTGVICG----RRHQRVTRLDLRNQSIGGT 89
AL +KS L PL WN + Q W+G C + + L L NQ + G
Sbjct: 376 ALQTLKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF 433
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLI 149
+ + L L+ INL+ N G IPP +G LE L LS NSF+G+IP +L + ++L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 150 ELFVDTNYLVGEIPAAIGGL 169
L ++ N L G +PAA+GG
Sbjct: 494 ILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-13
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 25/163 (15%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
V LD+ N ++ G ++ ++ L+ ++LA N F G +P LE L LS N
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQ 486
Query: 134 FSGT------------------------IPTNLSRCSNLIELFVDTNYLVGEIPAAIGGL 169
FSG IP LS C L+ L + N L G+IPA+ +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
Query: 170 FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS 212
L +L + N ++G++P ++GN+ SL+ ++ N L G + S
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 42/118 (35%), Positives = 62/118 (52%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN 131
+R+ LDL G + +G+LS L + L+ N GEIP ++ L L LS+
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 132 NSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS 189
N SG IP + S L +L + N L GEIP +G + L ++ I HNH+ G LP++
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417
G +P+ ++ L ++ I + N I G IPP + + SL L + N G+IP +G+L
Sbjct: 432 GFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 418 NLQLLNLGGNFLQGSIPSSLGNLTL 442
+L++LNL GN L G +P++LG L
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158
F+ + L N G G IP I + L+ + LS NS G IP +L ++L L + N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIG 191
G IP ++G L L L + N ++G++PA++G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270
+ + +LR+L ++++ N G IPP + +I+SLEV+ LS N F GS+P G L +LR
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRI 494
Query: 271 LSPNGNNFTGSIPVSL 286
L+ NGN+ +G +P +L
Sbjct: 495 LNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
++GL L N G IP ++S+ +L + + N + G IP ++G + LE L + +N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219
G +P S+G L+SL ++ N L GR+ + + R L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 383 GTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442
G IP +I KL L + + N + G IPP +G + +L++L+L N GSIP SLG LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 443 L 443
L
Sbjct: 492 L 492
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-08
Identities = 23/41 (56%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 31 NETDRLALLAIKSQL-HDPLGVTSSWNNSM-NLCQWTGVIC 69
DR ALLA KS L DP G SSWN S + C WTGV C
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 23/112 (20%)
Query: 151 LFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210
L +D L G IP I L L+ + + N I G +P S+G+++SL
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262
+LD+++N F+G+IP + ++SL +++L+ N +G +P G
Sbjct: 470 ----------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 231 GTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290
G IP I + L+ I+LS N G++P G ++ +L L + N+F GSIP SL +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 291 RLEMIEFSRNQFSGRV 306
L ++ + N SGRV
Sbjct: 491 SLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 398 LTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L +D L G IP +I +L++LQ +NL GN ++G+IP SLG++T L
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 6/202 (2%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+T LDL N +I S L+ ++L++N + +P + L+ L LS N S
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS 176
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
+P LS SNL L + N + ++P I L LE L + +N I +L +S+ NL +
Sbjct: 177 -DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN 233
Query: 196 LLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255
L ++ N L +S+ L NL LD ++ + + ++++L + LS N +
Sbjct: 234 LSGLELSNNKLEDLPESIGNLSNLETLD--LSNNQISSISSLGSLTNLRELDLSGNSLSN 291
Query: 256 SLPVDTGVNLPNLRQLSPNGNN 277
+LP+ + L L+
Sbjct: 292 ALPLIALLLLLLELLLNLLLTL 313
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 85/352 (24%), Positives = 138/352 (39%), Gaps = 73/352 (20%)
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153
V +L+ LR I+L + L EIP + LE L LS+ CS+L+EL
Sbjct: 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD-------------CSSLVELPS 675
Query: 154 DTNYL-------------VGEIPAAIG--GLFKL-----ERLFIFHNHITG--------- 184
YL + +P I L++L RL F + T
Sbjct: 676 SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735
Query: 185 ---QLPAS--IGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT-----IP 234
+ P++ + NL L+ +++ LW R+ L L +L + S +P
Sbjct: 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
I N+ LE + + +LP TG+NL +L L +G + + P +N S L +
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLP--TGINLESLESLDLSGCSRLRTFPDISTNISDLNL 853
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSWLNM-GINNLGTGTANELDFINLLTNCSKLERLYFNR 353
+ V + NLS+L+M G NNL + N SKL+ L
Sbjct: 854 SRTGIEE----VPWWIEKFSNLSFLDMNGCNNL----------QRVSLNISKLKHLETVD 899
Query: 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405
G L + N S + ++AM + I +P + + +N +D+ L
Sbjct: 900 FSDCGALTEASWNGSPS--EVAMATDNIHSKLPSTV-CINFINCFNLDQEAL 948
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 16/236 (6%)
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISL 248
++ NL L + D+ N L I L++L NL LD+ N+ + P S+L+ + L
Sbjct: 88 NLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
S+N+ SLP NLPNL+ L + N+ + +P LSN S L ++ S N+ S +
Sbjct: 148 SDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368
+ L L L++ N++ ++ ++ L+N L L + N+ E +LP S+ NLS
Sbjct: 204 EIELLSALEELDLSNNSI-------IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255
Query: 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
+ ++ + + N+IS + L +L L + N L+ P I L L L L
Sbjct: 256 N-LETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS-NALPLIALLLLLLELLL 307
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
G +P D L +L+ ++ +GN+ G+IP SL + + LE+++ S N F+G + +L
Sbjct: 432 GFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 315 NLSWLNMGINNL 326
+L LN+ N+L
Sbjct: 491 SLRILNLNGNSL 502
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.98 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.86 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.82 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.78 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.7 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.69 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.58 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.29 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.25 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.21 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.19 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.18 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.15 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.08 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.08 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.01 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.84 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.8 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.76 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.74 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.72 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.57 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.51 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.5 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.46 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.45 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.35 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.23 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.11 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.01 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.96 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.88 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.87 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.84 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.83 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.83 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.71 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.41 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.37 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.35 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.94 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.84 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.8 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.59 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.58 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.12 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.76 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.32 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.71 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.24 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 92.55 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.81 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.5 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.36 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.36 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.95 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.95 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 87.84 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=437.97 Aligned_cols=402 Identities=33% Similarity=0.529 Sum_probs=275.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcC
Q 047097 31 NETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
.++|+.|+++||+.+.+|.+.+.+|+...+||.|.|+.|+.. .+|+.|+++++.+.+..+..+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 568899999999999888888899998889999999999864 7899999999999999999999999999999999999
Q ss_pred cccCCcccC-CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCcc
Q 047097 111 LGEIPPQIG-RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS 189 (443)
Q Consensus 111 ~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 189 (443)
++.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 988887654 788888888888888766664 34667777777777776666767777777777777777776666777
Q ss_pred ccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCc
Q 047097 190 IGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 268 (443)
+.++++|++|++++|.+.+.. ..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+. .+++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCC
Confidence 777777777777777665543 5566666666777766666666666666666666666666666655665544 56666
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~ 336 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQV 336 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCE
Confidence 666666666666666666666666666666666666666656666666666666666555444 33444445555
Q ss_pred EEccCCcccccCchhHHhh-----------------------ccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 349 LYFNRNRFEGELPHSVANL-----------------------SSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
|++++|.+++.+|..+... .+.|+.|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 5555555444444444433 14455555555555555555555555566666666666
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCccccCCCC
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
++.+|..+..+++|+.|++++|++++.+|..++.+++
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 5555555656666666666666666665555444443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=379.08 Aligned_cols=368 Identities=33% Similarity=0.575 Sum_probs=263.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 57888999999888888888888889999999888888888888888888888888888888888888888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+++.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.. ..+.++++|+.|++++|.+.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 888887777888888888888888888877777777777777777777777766544 4555666666666666666666
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc------------------------cCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG------------------------SIPVSLSN 288 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~~l~~ 288 (443)
+|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++++ .+|..+..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 666666666666666666666555554443 44555555555554443 44444445
Q ss_pred CCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhh-----------------hhhhcCCCCCCEEEc
Q 047097 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF-----------------INLLTNCSKLERLYF 351 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~l~~~~~L~~L~L 351 (443)
+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..... .......++|+.|++
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 555666666666665555555556666666666666555443311000 000112345667777
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++..|..+..+ ++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++|
T Consensus 483 s~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 483 SRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCCccCCccChhhhhh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 7777777777766665 778888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCccccCCCCC
Q 047097 432 SIPSSLGNLTLL 443 (443)
Q Consensus 432 ~~p~~l~~l~~L 443 (443)
.+|..+.++++|
T Consensus 562 ~~p~~l~~l~~L 573 (968)
T PLN00113 562 EIPKNLGNVESL 573 (968)
T ss_pred cCChhHhcCccc
Confidence 888887776543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=291.12 Aligned_cols=358 Identities=22% Similarity=0.228 Sum_probs=316.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.||+++|.+...-+..|.++++|+.+.+.+|.++ .+|...+...+|+.|+|.+|.|+......+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45788999999999888888999999999999999998 78887777888999999999999777788899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+.|.++..--..|..-.++++|++++|.++..-...|.++.+|..|.++.|.++..+ ..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 999998655567888889999999999999888888999999999999999999999 7888899999999999998744
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
--..|.++++|+.|.+..|++. .+.+..|..+.++++|++..|+++..-..++.++++|+.|++++|.|...-+..+.-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 3566788999999999999998 888888889999999999999999777788899999999999999999888888999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCc---hhh
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP---PEI 389 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~---~~l 389 (443)
+++|++|++++|.++...+ +.+..+..|++|+|+.|.++ .+-+..+...++|+.||+++|.+...+- ..|
T Consensus 316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 9999999999999998877 67888899999999999998 5666555556899999999999887544 347
Q ss_pred hcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 390 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
.++++|+.|++.||++...--.+|.+++.|+.|||.+|.|-..-|.+|..+
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 789999999999999994445589999999999999999988888887654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=277.91 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=302.5
Q ss_pred EEEEcCCCCCceecCccccCC--CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNL--SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
+.+|.+++.+...-...+.++ +.-+.|++++|.++..-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 445555555543222222222 34677999999999888889999999999999999998 899988888889999999
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
+|.++..-.+++..++.|+.|+++.|.++..--..+..-.++++|++++|.++... ..|..+.+|..|.++.|.++..-
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 99999877889999999999999999999555556777789999999999999888 89999999999999999999655
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+..|.++++|+.|++..|++. .+.-..|.++++|+.|.+..|++...-...|..+.++++|+++.|+++..-..++.++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 566777999999999999987 5545566789999999999999997777788899999999999999998888889999
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+.|+.|++++|.+....+ ....-+++|++|+|++|+++ .+++.-+...+.|+.|++++|.++...-..|..++
T Consensus 293 t~L~~L~lS~NaI~rih~------d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHI------DSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred chhhhhccchhhhheeec------chhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 999999999999988877 45566899999999999999 55554444448899999999999966666788999
Q ss_pred CCCeeccccccccccCch---hccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPP---EIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+|++|||++|.+.+.+-+ .|..+++|+.|++.||++...-.++|..+..|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 999999999999876544 57889999999999999995555678777654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-35 Score=273.87 Aligned_cols=346 Identities=24% Similarity=0.378 Sum_probs=256.4
Q ss_pred CcEEEEEcCCCCCc-eecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIG-GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
+-|+.+|+++|.++ +..|..+..++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 45788899999888 458888888999999998888876 78888999999999999999887 6677788888889888
Q ss_pred cccccce-eccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCC
Q 047097 153 VDTNYLV-GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 153 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..|++. .-+|..+..+..|.+|+++.|++. +.|..+...+++-.|++++|.+..++ ..+.++..|-.||+++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 8888775 346778888889999999999888 77888888888889999999888888 67778888888999988887
Q ss_pred CCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc-ccCCccccCCCCCCEEecccCcccccCCcc
Q 047097 231 GTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+|+.+..+..|++|++++|.+. .+.......+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 77888888888888888888765 322222225667777777776544 356777778888888888888776 66777
Q ss_pred ccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcc-cCchh
Q 047097 310 FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG-TIPPE 388 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 388 (443)
+.++++|+.|++++|.++..... .+...+|++|++|.|+++ .+|..++++ ++|+.|+..+|+++= -+|..
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccc
Confidence 77888888888888887654432 233356777777777777 677777775 666666666666542 25555
Q ss_pred hhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 389 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++.+..|+.+...+|.+. .+|+.++.|++|+.|.|+.|++- .+|+.
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 555555555555555555 55555555555555555555554 44443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-35 Score=259.89 Aligned_cols=342 Identities=26% Similarity=0.380 Sum_probs=254.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.+++++|.+. ..|++++.+..++.++.+.|+++ .+|++++.+.+|+.+++++|.+. ..|+.++.+-.|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34677788888775 55667788888888888888876 77888888888888888888877 67777777888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.+|+++ ..|+.+..+.++..+++.+|++. ..|...-+++.|++++...|.+...++.++.+.+|..|++..|.+. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cC
Confidence 888877 67777777777888888888777 3444444477788888888877777777788888888888888776 45
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| .|..+..|.+++++.|.+. .+|....++++++..||++.|++. ..|..+..+.+|+.||+++|.++ ..|..++++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 5 6777777888888888777 777777777888888888888887 67777777778888888888887 456667777
Q ss_pred CCCCEEECCCCcCCCcC---------------------------------------------------------------
Q 047097 314 KNLSWLNMGINNLGTGT--------------------------------------------------------------- 330 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~--------------------------------------------------------------- 330 (443)
+|+.|-+.+|.+....
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 7888877777542100
Q ss_pred --CCch-------------------------------------------hhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 331 --ANEL-------------------------------------------DFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 331 --~~~~-------------------------------------------~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
.+.+ ..+..+..+++|..|++++|.+. .+|..++
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~ 455 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG 455 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh
Confidence 0000 01234566788888888888887 7888888
Q ss_pred hhccCCCEEeCcCCcCcccCch------------------------hhhcccCCCeeccccccccccCchhccCCCCCCe
Q 047097 366 NLSSTIKQIAMGRNRISGTIPP------------------------EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQL 421 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~------------------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 421 (443)
.+ ..|+.|+++.|.|. .+|. .+.++.+|..||+.+|.+. .+|..++++++|++
T Consensus 456 ~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 456 SL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 86 55888888887665 3332 3666777788888888777 77888888888888
Q ss_pred eecccCcCc
Q 047097 422 LNLGGNFLQ 430 (443)
Q Consensus 422 L~l~~n~l~ 430 (443)
|+++||+|.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 888888877
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-32 Score=257.34 Aligned_cols=333 Identities=26% Similarity=0.419 Sum_probs=292.7
Q ss_pred cCCCCCCEEECCCCcCcc-cCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 95 GNLSFLRYINLANNGFLG-EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+-++.++-.|+++|.++| ..|..+..++.++.|.|....+. .+|..++.+.+|++|.++.|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 456788999999999995 68999999999999999999988 89999999999999999999988 5556788999999
Q ss_pred EEeccccccC-CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh-hhhCCCCCcEEEcccC
Q 047097 174 RLFIFHNHIT-GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP-PIFNISSLEVISLSEN 251 (443)
Q Consensus 174 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n 251 (443)
.+.+..|++. ..+|..+..+..|+.||+++|++...+..+...+++-.|++++|+|. .+|. -+.+++-|-.||+++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 9999999874 46799999999999999999999999988888999999999999998 5554 4567899999999999
Q ss_pred CCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcC
Q 047097 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
++. .+|..+. .+.+|++|++++|.+.-.-...+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|++...
T Consensus 161 rLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v- 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV- 237 (1255)
T ss_pred hhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-
Confidence 998 8888887 8999999999999886433445567788999999987554 46888899999999999999998643
Q ss_pred CCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc-ccC
Q 047097 331 ANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT-GTI 409 (443)
Q Consensus 331 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 409 (443)
| ..+..+++|+.|+||+|+++ .+......+ .+|++|++|.|+++ .+|+.++.+++|+.|.+.+|+++ +-+
T Consensus 238 P------ecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 238 P------ECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred h------HHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 2 67888999999999999999 666666665 78999999999999 89999999999999999999887 468
Q ss_pred chhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 410 PPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 410 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
|..++.+.+|+.+...+|.+. -+|+.++.|..|
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 999999999999999999887 899999887643
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-33 Score=246.58 Aligned_cols=316 Identities=28% Similarity=0.413 Sum_probs=214.2
Q ss_pred cccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCC
Q 047097 93 YVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKL 172 (443)
Q Consensus 93 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 172 (443)
+++.+-.+..++..+|+++ ..|+.+..+.+|..+++.+|.++ ..|...-+++.|++|+...|-++ .+|+.++.+.+|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L 208 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESL 208 (565)
T ss_pred hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhh
Confidence 3344444444444444443 34444444444555555555554 23333333666777777776665 778888888888
Q ss_pred cEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccC
Q 047097 173 ERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251 (443)
Q Consensus 173 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 251 (443)
..|++..|++. ..| .|..|..|+++.+..|.+...+ +...+++++..||+.+|.+. ..|..+.-+.+|+.||+++|
T Consensus 209 ~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence 88888888887 556 7888888888888888888777 56668899999999999998 78898999999999999999
Q ss_pred CCCccCchhhhcCCCCccEEeCCCCcCcc---------------------------------------------------
Q 047097 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTG--------------------------------------------------- 280 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------------------------------------- 280 (443)
.++ .+|...+ ++ +|+.|.+.+|.+..
T Consensus 286 ~is-~Lp~sLg-nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 286 DIS-SLPYSLG-NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred ccc-cCCcccc-cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 998 7888777 66 88999888885520
Q ss_pred -------------cCCccccC---CCCCCEEecccCccc-----------------------ccCCccccCCCCCCEEEC
Q 047097 281 -------------SIPVSLSN---ASRLEMIEFSRNQFS-----------------------GRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 281 -------------~~~~~l~~---~~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l 321 (443)
.+|+.... -.-.+.++++.|++. +.+|..+..+++|..|++
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence 01110000 011456666666542 234445677888889999
Q ss_pred CCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh------------------------HHhhccCCCEEeCc
Q 047097 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS------------------------VANLSSTIKQIAMG 377 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~------------------------~~~~~~~L~~L~l~ 377 (443)
++|.+.. .| ..++.+..|+.|+++.|.+. .+|.. +.. ..+|..||+.
T Consensus 443 ~NN~Ln~-LP------~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n-m~nL~tLDL~ 513 (565)
T KOG0472|consen 443 SNNLLND-LP------EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN-MRNLTTLDLQ 513 (565)
T ss_pred ccchhhh-cc------hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh-hhhcceeccC
Confidence 8776643 23 45666677888888888776 44432 223 3789999999
Q ss_pred CCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 378 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+|.+. .+|..++++++|++|++.||.|. .-+..+-.-+....|..-+++
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 99999 89999999999999999999998 333333323333344443333
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-28 Score=240.61 Aligned_cols=220 Identities=27% Similarity=0.386 Sum_probs=174.8
Q ss_pred CCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeC
Q 047097 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273 (443)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 273 (443)
.+|++++++.|.+...+..+..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|.... ...+|+.|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeee
Confidence 4677888888888888877788888999999888885 66666777777777777777776 5665543 5677777777
Q ss_pred CCCcCcccCCccc--------------------------cCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCC
Q 047097 274 NGNNFTGSIPVSL--------------------------SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 274 ~~n~l~~~~~~~l--------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
..|++. .+|..+ ...+.|+.|++.+|.+++.....+.++.+|+.|+|++|.+.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777665 222211 12346889999999999988888999999999999999997
Q ss_pred CcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccc
Q 047097 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
.... ..+.+++.|+.|+||+|+++ .+|..+..+ ..|++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus 397 ~fpa------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~-~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 397 SFPA------SKLRKLEELEELNLSGNKLT-TLPDTVANL-GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cCCH------HHHhchHHhHHHhcccchhh-hhhHHHHhh-hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 7665 67889999999999999999 899888876 78999999999998 778 78899999999999999985
Q ss_pred c-CchhccCCCCCCeeecccCc
Q 047097 408 T-IPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~-~p~~~~~l~~L~~L~l~~n~ 428 (443)
. +|+.. ..++|++||++||.
T Consensus 467 ~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhC-CCcccceeeccCCc
Confidence 4 34433 34899999999997
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=230.17 Aligned_cols=288 Identities=18% Similarity=0.181 Sum_probs=169.3
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 122 DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 122 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|++|++++|.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44444444444444 334444444555555554443222333 2444445555555444433344444455555555555
Q ss_pred cCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc--
Q 047097 202 RENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT-- 279 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-- 279 (443)
++|......+.-.++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|... .+++|++|.+.++...
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence 44422211111113444555555544333233321 234455555555544 444332 3445555555442211
Q ss_pred -----ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC
Q 047097 280 -----GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354 (443)
Q Consensus 280 -----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n 354 (443)
...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+..| ... .+++|+.|++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP------~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP------TGI-NLESLESLDLSGC 835 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC------CCC-CccccCEEECCCC
Confidence 0011112234678889999988777888889999999999999875444444 222 6788999999998
Q ss_pred cccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus 836 ~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 836 SRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred Ccccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 665566542 367999999999998 7899999999999999999765557888888899999999998853
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=229.20 Aligned_cols=346 Identities=17% Similarity=0.177 Sum_probs=268.3
Q ss_pred CcEEEEEcCCCCCce--ecCccccCCCCCCEEECCCCcC------cccCCcccCCCC-CCCEEEccCCcCCCCCCccccC
Q 047097 74 QRVTRLDLRNQSIGG--TLSPYVGNLSFLRYINLANNGF------LGEIPPQIGRQD-MLEGLVLSNNSFSGTIPTNLSR 144 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~ 144 (443)
.+|+.+.+....+.. ..+.+|.++++|+.|.+..+.+ ...+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666555443332 2445688999999999976643 234677776664 5999999999887 778877 5
Q ss_pred CCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcC-ccccccccCCCcCcEEe
Q 047097 145 CSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL-WGRIDSLVQLRNLLLLD 223 (443)
Q Consensus 145 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~l~~l~~L~~L~ 223 (443)
..+|++|++.++.+. .++..+..+++|+.|+++++.....+| .++.+++|+.|++.+|.. ...+..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999987 678888999999999999876555666 488899999999999854 44447788999999999
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
+++|.....+|..+ .+++|+.|++++|...+.+|. ..++|+.|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99987666777655 789999999999976656664 3578999999999987 677655 5788999988775321
Q ss_pred -------ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeC
Q 047097 304 -------GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376 (443)
Q Consensus 304 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l 376 (443)
...+......++|+.|++++|......| ..++++++|+.|++++|...+.+|..+ . .++|+.|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEEC
Confidence 1112223345789999999997766665 678899999999999987655888765 3 488999999
Q ss_pred cCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCC
Q 047097 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 377 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+.++++
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 998765566643 368999999999998 89999999999999999997666677766555443
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-27 Score=230.73 Aligned_cols=341 Identities=27% Similarity=0.335 Sum_probs=225.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
-++++||+++|.+. ..|..+..+.+|+.|+++.|.|. .+|.+..++.+|++++|.+|.+. ..|..+..+.+|++|++
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 34889999999884 67777889999999999999997 77888999999999999999887 89999999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccc-------------------cccCCCCCccccCCCCCCEEEccCCcCcccccccc
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFH-------------------NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~-------------------n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~ 214 (443)
+.|.+. .+|..+..++.++.+..++ |.+.+.++..+..++. .+++++|.+... .+.
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~--dls 196 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL--DLS 196 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh--hhh
Confidence 999886 6666555444444444443 3344444444444444 467766655411 111
Q ss_pred CC--------------------CcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCC
Q 047097 215 QL--------------------RNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274 (443)
Q Consensus 215 ~l--------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 274 (443)
.+ ++++.|+..+|.++... .-....+|++++++.|.++ .+|.++. .+.+|+.+...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHH-hcccceEeccc
Confidence 12 22333333333332110 0112344555666666555 5554333 55566666666
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc---------------------
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE--------------------- 333 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------- 333 (443)
+|+++ .+|..+....+|+.+.+..|.+. -+|....+++.|+.|++..|++.......
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 55554 34443434444444444444443 22222333444444444444332211100
Q ss_pred ----------------------hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 334 ----------------------LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 334 ----------------------~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
.+....+.++++|+.|+|++|++. .+|.....-.+.|+.|++|+|.++ .+|+++..
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 011256778899999999999998 888865554588999999999999 88999999
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcCccc
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
++.|+.|...+|++. ..| .+..++.|+.+|++.|.++..
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 999999999999998 888 688899999999999999744
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=207.00 Aligned_cols=264 Identities=28% Similarity=0.313 Sum_probs=164.1
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 456677777666 5666554 36677777777666 3443 2456777777777666 34432 34666777777
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
|.+...+..+ .+|+.|++++|.++ .+|. ..++|+.|++++|.+. .+|. ...+|+.|++++|+++ .+|
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc-ccc
Confidence 7665544322 35667777777766 3443 2356777777777776 4553 2345667777777776 344
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.. ..+|++|++++|++++ +|.. .++|+.|++++|.+..... ...+|+.|++++|+++ .+|..
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-~LP~l 400 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-SLPVL 400 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc----------cccccceEEecCCccc-CCCCc
Confidence 31 2467777777777764 3321 2456677777777654221 1245777777777777 45532
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
.+.|+.|++++|.++ .+|... .+|+.|++++|+++ .+|+.+..+++|+.|++++|++++..|..+.
T Consensus 401 ----~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 ----PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ----ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 245777777777776 455432 35667777777777 6777777777777777777777777666553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-25 Score=200.24 Aligned_cols=252 Identities=18% Similarity=0.180 Sum_probs=177.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccC-CcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN-NSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 152 (443)
...+.|+|..|.++...+.+|..+++||.|||++|.|+.+-|++|.+++.|..|-+.+ |+|+......|.++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999998887776 889966666789999999999
Q ss_pred cccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-------------ccccCCCcC
Q 047097 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-------------DSLVQLRNL 219 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-------------~~l~~l~~L 219 (443)
+.-|.+.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+.... ..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999998777789999999999999999888443347788888888877766421110 111111111
Q ss_pred cEEecccCcC-------------------------CCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeC
Q 047097 220 LLLDIAFNHF-------------------------SGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273 (443)
Q Consensus 220 ~~L~l~~n~~-------------------------~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 273 (443)
.-..+.+..+ .+..| ..|..+++|++|++++|.++ .+....|.+..++++|.+
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 1111111111 11122 23555666666666666666 555555556666666666
Q ss_pred CCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 274 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
..|++...-...|.++..|+.|++.+|+|+...|..|..+..|.+|++-.|.+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666544444556666666666666666666666666666666666666654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=201.09 Aligned_cols=267 Identities=25% Similarity=0.283 Sum_probs=211.1
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44678999999998 6787665 47999999999998 56653 588999999999998 45643 468899999
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+. .+|.. ..+|+.|++++|.+...+.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.+. .+
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 999887 45543 35788999999988876642 3679999999999984 4542 346888999999997 67
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI 337 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 337 (443)
|. -..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. .++|+.|++++|.+++...
T Consensus 338 P~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~------ 399 (788)
T PRK15387 338 PT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV------ 399 (788)
T ss_pred cc----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC------
Confidence 74 2368999999999998 45653 3578899999999984 5542 3579999999999976432
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 415 (443)
..++|+.|++++|.++ .+|.. +..|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+..
T Consensus 400 ----l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 400 ----LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ----cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1368999999999998 57753 246889999999998 78999999999999999999999888887633
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=193.29 Aligned_cols=333 Identities=18% Similarity=0.284 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCC---CCCCCCCCCCCCceee----------------eeeCCCCCcEEEEEcCCCCCcee
Q 047097 29 NSNETDRLALLAIKSQLHDPLG---VTSSWNNSMNLCQWTG----------------VICGRRHQRVTRLDLRNQSIGGT 89 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~c~~~~----------------~~c~~~~~~v~~L~l~~~~l~~~ 89 (443)
....++.+.+.+....+.-|.. +...|+.+.++|.-.. |.|.. +.|+.+.+-+......
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQASS 136 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccccc
Confidence 4567888888888888876642 2345998889996543 34433 4555555544221111
Q ss_pred c--CccccCCCCCCEEECC----CCcCcccC---Cccc-----CCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 90 L--SPYVGNLSFLRYINLA----NNGFLGEI---PPQI-----GRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 90 ~--~~~~~~l~~L~~L~L~----~n~~~~~~---~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
. +..... +-... ++.-.+.. ..++ .-..+...|+++++.++ .+|..+. ++|+.|++++
T Consensus 137 ~~~~~~~~~-----~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 137 ASGSKDAVN-----YELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred CCCCCChhh-----HHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 0 000000 00000 00000000 0000 01123456666666665 4554442 4566666666
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+...+..+. .+|+.|++++|.++ .+|.
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc
Confidence 6666 4454433 36666666666665 3454332 356666666666554443332 35666666666665 3454
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +|..+. ++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred ccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--Cc
Confidence 332 35666666666665 455332 235666666666666 344333 2456666666666653 343332 46
Q ss_pred CCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhh----hc
Q 047097 316 LSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI----RK 391 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~ 391 (443)
|+.|++++|.++.. + ..+ .++|++|++++|.++ .+|..+. ..|+.|++++|+++ .+|..+ ..
T Consensus 348 L~~L~Ls~N~L~~L-P------~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 348 LQVLDVSKNQITVL-P------ETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred ccEEECCCCCCCcC-C------hhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 66666666666532 2 111 245666666666666 5555443 23666666666665 444433 23
Q ss_pred ccCCCeecccccccc
Q 047097 392 LVSLNWLTIDRNQLT 406 (443)
Q Consensus 392 l~~L~~L~l~~n~~~ 406 (443)
++++..|++.+|.++
T Consensus 414 ~~~l~~L~L~~Npls 428 (754)
T PRK15370 414 GPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCccEEEeeCCCcc
Confidence 355666666666665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-20 Score=185.12 Aligned_cols=247 Identities=23% Similarity=0.361 Sum_probs=198.8
Q ss_pred CCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecc
Q 047097 146 SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIA 225 (443)
Q Consensus 146 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~ 225 (443)
.+...|+++++.++ .+|..+. ++++.|++++|.++ .+|..+. .+|+.|++++|.+...+..+. ++|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45788999999888 5676554 58999999999999 5676654 589999999999987765443 479999999
Q ss_pred cCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccccc
Q 047097 226 FNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 226 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence 99998 6777664 58999999999998 7886543 58999999999998 4665443 579999999999985
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
+|..+ .++|+.|++++|.++.... .+ +++|+.|++++|+++ .+|..+ ++.|+.|++++|+++ .+
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NL 382 (754)
T ss_pred CCccc--cccceeccccCCccccCCh-------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CC
Confidence 44433 3689999999999876432 22 378999999999998 678655 368999999999999 67
Q ss_pred chhhhcccCCCeeccccccccccCchhc----cCCCCCCeeecccCcCc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEI----GELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~ 430 (443)
|..+. .+|+.|++++|++. .+|+.+ ..++++..|++.+|+++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77765 47999999999998 666654 44588999999999986
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-21 Score=180.42 Aligned_cols=284 Identities=18% Similarity=0.206 Sum_probs=177.0
Q ss_pred EEEccCCcCC-CCCCccccCCCCCcEEecccccceec----cCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEE
Q 047097 126 GLVLSNNSFS-GTIPTNLSRCSNLIELFVDTNYLVGE----IPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 126 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
.|+|.++.++ +.....+..+.+|+.++++++.++.. ++..+...+++++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 4566666665 23344455666677777777776422 33344555566666666655441 01100
Q ss_pred ccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCC---CcEEEcccCCCCcc----CchhhhcCC-CCccEEe
Q 047097 201 VRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS---LEVISLSENRFTGS----LPVDTGVNL-PNLRQLS 272 (443)
Q Consensus 201 l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~L~ 272 (443)
......+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+. +...+. .+ ++|++|+
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~ 143 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLV 143 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEE
Confidence 000123444566666666666665444444444433 77777777776521 111222 34 6778888
Q ss_pred CCCCcCcc----cCCccccCCCCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCC
Q 047097 273 PNGNNFTG----SIPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344 (443)
Q Consensus 273 l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 344 (443)
+++|.+++ .++..+..++.|++|++++|.+++. ++..+..+++|+.|++++|.+.+... ..+...+..++
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--SALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--HHHHHHhcccC
Confidence 88887763 2334456667888888888887742 22334556788888988888764322 12335567788
Q ss_pred CCCEEEccCCcccccCchhHHhhc----cCCCEEeCcCCcCcc----cCchhhhcccCCCeecccccccccc----Cchh
Q 047097 345 KLERLYFNRNRFEGELPHSVANLS----STIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGT----IPPE 412 (443)
Q Consensus 345 ~L~~L~Ls~n~l~~~~p~~~~~~~----~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~ 412 (443)
+|++|++++|++++.....+.... +.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 999999999988864444444332 589999999998873 2445666778999999999999854 3444
Q ss_pred ccCC-CCCCeeecccCcC
Q 047097 413 IGEL-KNLQLLNLGGNFL 429 (443)
Q Consensus 413 ~~~l-~~L~~L~l~~n~l 429 (443)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 6899999998875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-21 Score=175.35 Aligned_cols=274 Identities=21% Similarity=0.230 Sum_probs=132.1
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc-cccCCCCCccccCCCCCCEEEccC
Q 047097 125 EGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH-NHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 125 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
..++|..|.|+...|..|+.+++|+.|+|+.|.|+.+.|.+|.++.++..|-+.+ |+|+..-...|+++..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555544444555555555555555555555555555555554444433 555533333444444444444444
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc----
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT---- 279 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~---- 279 (443)
|.+.-.. ...+..++++..|.+.+|.+. .++...+..+..++.+.+..|.+-
T Consensus 150 n~i~Cir-----------------------~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 150 NHINCIR-----------------------QDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhcchh-----------------------HHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence 4444333 344444444444444444444 343333334444444444443311
Q ss_pred --------ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE--EC-CCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 280 --------GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL--NM-GINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 280 --------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--~l-~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
...|..++...-.....+.+.++....+..|.. .++.+ .+ +.+......|. ..+..+++|++
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~-----~cf~~L~~L~~ 278 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPA-----KCFKKLPNLRK 278 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChH-----HHHhhcccceE
Confidence 011222222222223333333332222221111 11111 11 11112222221 34666666777
Q ss_pred EEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
|++++|++++.-+.+|... ..++.|.+..|++...-...|.++..|+.|+|++|+|+...|.+|..+..|.+|.+-+|+
T Consensus 279 lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred eccCCCccchhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7777776664444444443 566666777666654444456666667777777777776666667767777777766666
Q ss_pred Cc
Q 047097 429 LQ 430 (443)
Q Consensus 429 l~ 430 (443)
+.
T Consensus 358 ~~ 359 (498)
T KOG4237|consen 358 FN 359 (498)
T ss_pred cc
Confidence 53
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-20 Score=175.00 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=124.3
Q ss_pred EEcCCCCCce-ecCccccCCCCCCEEECCCCcCcc----cCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 79 LDLRNQSIGG-TLSPYVGNLSFLRYINLANNGFLG----EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 79 L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
|+|..+.+++ .....+..+.+|++|+++++.++. .++..+...+.+++++++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 4555555552 233334455556666666666643 133344455556666666554431 01000
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCC---CCEEEccCCcCcccc-----ccccCC-CcCcEEec
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS---LLAFDVRENILWGRI-----DSLVQL-RNLLLLDI 224 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~~~~~~-----~~l~~l-~~L~~L~l 224 (443)
..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.... ..+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 122234444555555555555554333333332222 455555444443211 122333 44555555
Q ss_pred ccCcCCCC----CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccC
Q 047097 225 AFNHFSGT----IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 225 ~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
++|.+++. ++..+..+++|++|++++|.+.+.... .++..+..+++|++|++++|
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR---------------------ALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH---------------------HHHHHHHhCCCCCEEeccCC
Confidence 55554421 122233344455555555444421111 11112223334444444444
Q ss_pred ccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh-cCCCCCCEEEccCCcccccCc----hhHHhhccCC
Q 047097 301 QFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL-TNCSKLERLYFNRNRFEGELP----HSVANLSSTI 371 (443)
Q Consensus 301 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L 371 (443)
.+++. +...+..+++|++|++++|.+++.... .+...+ ...+.|+.|++++|.+++... ..+... ++|
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L 280 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESL 280 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCc
Confidence 44321 112234445555555555554431110 000111 123556666666666652211 122222 456
Q ss_pred CEEeCcCCcCccc----Cchhhhcc-cCCCeeccccccc
Q 047097 372 KQIAMGRNRISGT----IPPEIRKL-VSLNWLTIDRNQL 405 (443)
Q Consensus 372 ~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~ 405 (443)
+.+++++|.++.. +...+... +.|+.+++.+|.+
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6666666666643 33333333 5677777776653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-19 Score=142.66 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=126.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|.+++|.++ .+|+.++.+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56888899999886 56667899999999999999987 78888999999999999999887 78999999999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+|++.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.++.|.+...+..++.+..|++|.+.+|.++ .
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-e
Confidence 9888763 57778888888888888888887 7788888888887777777776665555555566666666666555 4
Q ss_pred CChhhh
Q 047097 233 IPPPIF 238 (443)
Q Consensus 233 ~~~~l~ 238 (443)
+|+.++
T Consensus 188 lppel~ 193 (264)
T KOG0617|consen 188 LPPELA 193 (264)
T ss_pred cChhhh
Confidence 444443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-19 Score=140.87 Aligned_cols=150 Identities=31% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
.+.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 333444444444 34444444444444444444444 44444455555555555555444 4555555555555555555
Q ss_pred CcCcccc--ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc
Q 047097 204 NILWGRI--DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 204 n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 279 (443)
|.+.... ..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. ++|..++ .+..|++|++.+|.++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee
Confidence 5443322 34444555566666666655 55566666666666666666655 5565555 5555666666666555
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=146.27 Aligned_cols=152 Identities=34% Similarity=0.528 Sum_probs=126.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC-----ceeeeeeCCCC----CcEEEEEcCCCCCceecCccccCCC
Q 047097 28 ANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLC-----QWTGVICGRRH----QRVTRLDLRNQSIGGTLSPYVGNLS 98 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~~~~----~~v~~L~l~~~~l~~~~~~~~~~l~ 98 (443)
..+.++|..||+++|..+.++. ..+|.. ++| .|.|+.|.... ..++.|+|+++.+.+.+|..+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 3456788999999999887653 247964 344 69999995321 3589999999999999999999999
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCC-CCCcEEec
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGL-FKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l 177 (443)
+|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|++++|.+++.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999887653 46677777
Q ss_pred cccccC
Q 047097 178 FHNHIT 183 (443)
Q Consensus 178 ~~n~l~ 183 (443)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=119.90 Aligned_cols=194 Identities=35% Similarity=0.425 Sum_probs=103.8
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCC-CCcEEeccccccCCCCCccccCCCCCCEEEccCC
Q 047097 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 126 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
.++...+.+. .-...+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666553 22233344466777777777766 4555555553 6777777777666 44455666666666666666
Q ss_pred cCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCc
Q 047097 205 ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV 284 (443)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 284 (443)
.+...+......+.|+.|++++|.+. .+|........|+++.+++|... ..+.... .+.++..+.+.+|.+. .++.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccc
Confidence 66555544445555566666666555 44444344444555555555322 2332222 4455555555555544 2244
Q ss_pred cccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 285 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+..++.++.|++++|.++.... ++...+++.|++++|.+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 44555555555555555543222 4455555555555555443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-12 Score=115.05 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=94.9
Q ss_pred cccCCCCCcEEeccccccCCC----CCccccCCCCCCEEEccCCcCccc----c-------ccccCCCcCcEEecccCcC
Q 047097 165 AIGGLFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGR----I-------DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~-------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..+..+++++|.+... +...+.+.++|+..+++.-..... + ..+..+++|+++++|+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455667888888888877532 233455666777777765322111 1 2344556777777777777
Q ss_pred CCCCChh----hhCCCCCcEEEcccCCCCccCchhh------------hcCCCCccEEeCCCCcCccc----CCccccCC
Q 047097 230 SGTIPPP----IFNISSLEVISLSENRFTGSLPVDT------------GVNLPNLRQLSPNGNNFTGS----IPVSLSNA 289 (443)
Q Consensus 230 ~~~~~~~----l~~~~~L~~L~l~~n~~~~~~~~~~------------~~~~~~L~~L~l~~n~l~~~----~~~~l~~~ 289 (443)
....++. +.++..|++|.+.+|.+.-.-...+ ....+.|+++...+|.+... +...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 6444333 3456777777777776641111110 01334555555555544311 11223344
Q ss_pred CCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 290 SRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
+.|+.+.+..|.|... ....+..+++|+.|||.+|.++.... ..+...+..+++|+.|++++|.+..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--VALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--HHHHHHhcccchheeeccccccccc
Confidence 4555555555544311 11123445555555555554433221 1222334444455555555554443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-12 Score=121.18 Aligned_cols=180 Identities=30% Similarity=0.483 Sum_probs=92.8
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCCC-CccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNLP-NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 317 (443)
..+.++.+++.+|.+. .++.... ... +|+.|++++|.+. .+|..+..++.|+.|++++|+++. ++......+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhh
Confidence 3344555555555555 4444333 232 5555555555554 333445555555555555555552 222223455555
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCe
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNW 397 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 397 (443)
.|++++|.+..... .......|+++.+++|.+. ..+..+... .++..+.+.+|++. ..+..++.+++++.
T Consensus 190 ~L~ls~N~i~~l~~-------~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~ 259 (394)
T COG4886 190 NLDLSGNKISDLPP-------EIELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLET 259 (394)
T ss_pred heeccCCccccCch-------hhhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccce
Confidence 55555555544332 1123334566666666433 233333333 44555555666555 22455666666666
Q ss_pred eccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 398 LTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 398 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
|++++|+++ .++. +..+.+++.|++++|.++...|
T Consensus 260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 666666666 4444 5566666666666666665444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-12 Score=116.36 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=39.5
Q ss_pred CCCCcEEEcccCCCCccCc---hhhhcCCCCccEEeCCCCcCccc----CCccccCCCCCCEEecccCccccc----CCc
Q 047097 240 ISSLEVISLSENRFTGSLP---VDTGVNLPNLRQLSPNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGR----VSV 308 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~ 308 (443)
-+.|++++...|++...-. ...+...+.|+.+.+..|.+... ....+..|+.|+.|++.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3455555555555442111 11122334555555555544311 112334555555555555554421 122
Q ss_pred cccCCCCCCEEECCCCcCCC
Q 047097 309 DFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 309 ~~~~l~~L~~L~l~~n~l~~ 328 (443)
.++.+++|+.|++++|.+..
T Consensus 236 aL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred Hhcccchheeeccccccccc
Confidence 23445555555555555543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-12 Score=119.78 Aligned_cols=211 Identities=19% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCCCCCCEEEccCCcCCCCCC-ccccCCCCCcEEecccccceec--cCccccCCCCCcEEeccccccCCCCCcc-ccCCC
Q 047097 119 GRQDMLEGLVLSNNSFSGTIP-TNLSRCSNLIELFVDTNYLVGE--IPAAIGGLFKLERLFIFHNHITGQLPAS-IGNLS 194 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 194 (443)
+++++|+...+.++....... .....|++++.|+++.|-+... +......+++|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 457789999999888763322 3567889999999999876632 2234567899999999999876332221 13568
Q ss_pred CCCEEEccCCcCcccc--ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCc-hhhhcCCCCccEE
Q 047097 195 SLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLP-VDTGVNLPNLRQL 271 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L 271 (443)
+|+.|.++.|.++... ..+..+|+|+.|++..|............+..|++||+++|++. .++ ......++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 8999999999888554 56678899999999998533233333455778999999999887 343 2222378899999
Q ss_pred eCCCCcCcccC-Ccc-----ccCCCCCCEEecccCccccc-CCccccCCCCCCEEECCCCcCCCcC
Q 047097 272 SPNGNNFTGSI-PVS-----LSNASRLEMIEFSRNQFSGR-VSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 272 ~l~~n~l~~~~-~~~-----l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
.++.+.+++.- |+. ....++|+.|++..|++.+. ....+..+++|+.|.+..|.+....
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 99998887432 222 24568899999999988531 2223556677788887777776443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-13 Score=126.45 Aligned_cols=192 Identities=29% Similarity=0.364 Sum_probs=127.3
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
.+..|++.|++. .+|..+..|-.|+.+.++.|.+. .+|.++.++..|.+++++.|.++ ..|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 445566666654 45555666666777777777776 66777777777777777777776 5666665543 67777777
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|+++ .+|+.++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+...+..+..+ .|..||++.|++. .+|.
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecch
Confidence 7776 66777777777777777777776 56677777777777777777777776666544 3677777777776 6677
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhc--CCCCccEEeCCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGV--NLPNLRQLSPNGN 276 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n 276 (443)
.|.+++.|++|.|.+|.+. .-|..+.. ...-.++|+..-+
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7777777777777777776 44444321 1122345555555
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-13 Score=127.07 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=141.0
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEE
Q 047097 121 QDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 121 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
+.--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|+.+.++..|..++++.|+++ ..|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 333456678888887 77887777778888888888776 77888888888888888888887 6677776664 77777
Q ss_pred ccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 201 VRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 201 l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
+++|++...+..+.....|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|.... .+ .|..||++.|+++
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCcee-
Confidence 888887777766667777888888888776 66777777788888888887777 6776665 33 4777888888877
Q ss_pred cCCccccCCCCCCEEecccCcccccCCccc---cCCCCCCEEECCCC
Q 047097 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDF---SRLKNLSWLNMGIN 324 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n 324 (443)
.+|..|.+|..|++|-|.+|.+. ..|..+ +...=.++|+...+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77777888888888888888776 334333 22333556666555
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-12 Score=116.82 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=65.8
Q ss_pred ccCCCCCCEEEccCCcCcccc---ccccCCCcCcEEecccCcCCCCCChhh-hCCCCCcEEEcccCCCCccCchhhhcCC
Q 047097 190 IGNLSSLLAFDVRENILWGRI---DSLVQLRNLLLLDIAFNHFSGTIPPPI-FNISSLEVISLSENRFTGSLPVDTGVNL 265 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 265 (443)
...|++.+.|+++.|.+..-. ....++++|+.|+++.|.+.-...... ..+++|+.|.++.|.++-.--..+...+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344444455555544433222 233445555555555554432111111 1234444555555544411111122244
Q ss_pred CCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCC
Q 047097 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 344 (443)
|+|+.|++.+|...........-+..|++|+|++|.+.+.. ....+.++.|+.|+++.+.+......+.+.......++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555554311111222223344555555555443211 11234445555555554444332222111112233444
Q ss_pred CCCEEEccCCcc
Q 047097 345 KLERLYFNRNRF 356 (443)
Q Consensus 345 ~L~~L~Ls~n~l 356 (443)
+|++|+++.|++
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 555555555544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-12 Score=110.07 Aligned_cols=204 Identities=25% Similarity=0.255 Sum_probs=133.8
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC-CcCcccCCccccCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG-NNFTGSIPVSLSNAS 290 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~ 290 (443)
.+.-+++|+.+.++.+.-. .+......-|.|+++.+.+..+. ..|..+ ....+....... .-.+|..........
T Consensus 209 ~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~--pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLL--PETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred chHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccccc--chhhhcCccCCCCCccCCceEEecchHh
Confidence 3444566777777666433 22222333466777776665443 222111 111111111110 111222223333446
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
.|+++|+++|.|+ .+..+..-.|.++.|++++|.+... +.+..+++|+.||||+|.++ .+..|-..+ -+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--------~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL-GN 353 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--------QNLAELPQLQLLDLSGNLLA-ECVGWHLKL-GN 353 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--------hhhhhcccceEeecccchhH-hhhhhHhhh-cC
Confidence 7899999999887 4555567789999999999988754 33777899999999999988 555554554 67
Q ss_pred CCEEeCcCCcCcccCchhhhcccCCCeecccccccccc-CchhccCCCCCCeeecccCcCccc
Q 047097 371 IKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT-IPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 371 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
++.|.++.|.+.. ...+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.+.
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999998863 35678888999999999999842 244688999999999999999854
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=99.57 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCCEEecccCcccccCCcccc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
.++++|++.+|.|+.. ..++ .+.+|+.|++++|.++... .+..++.|++|++++|.++ .+...+...+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--------~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--------GLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T--------T----TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--------CccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3455555555555421 1232 3455566666666554432 2445566666666666666 3443343323
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCch----hccCCCCCCeeecc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPP----EIGELKNLQLLNLG 425 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~l~~L~~L~l~ 425 (443)
++|+.|++++|++.+. .-..+..+++|+.|++.+|.+.. .+. .+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 6677777777766542 22445667777777777777763 232 34567777777643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-12 Score=108.46 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEe
Q 047097 193 LSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLS 272 (443)
Q Consensus 193 l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 272 (443)
...|+++|+++|.++...+...-.|+++.|++++|.+... ..++.+++|+.||+++|.++ .+.-+- ..+.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence 3445555555555554444444455555555555555411 22555555555555555544 332221 1444555555
Q ss_pred CCCCcCcccCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCEEECCCCcCC
Q 047097 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 273 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
+.+|.+. ..+.+..+.+|..||+++|+|.. .....++++|.|+.+.+.+|.+.
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555443 12233444445555555554432 11122344444444444444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-11 Score=97.60 Aligned_cols=107 Identities=27% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccC-CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccc-cCCCCCc
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIG-RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI-GGLFKLE 173 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 173 (443)
+...+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++. +++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 33456666666666652 2 2233 3556666666666665 222 35556666666666666652 33333 2456666
Q ss_pred EEeccccccCCCC-CccccCCCCCCEEEccCCcCc
Q 047097 174 RLFIFHNHITGQL-PASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 174 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~ 207 (443)
+|++++|++.... -..++.+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666654311 123444555555555555444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=120.09 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCchh---ccCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPPE---IGELK 417 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~---~~~l~ 417 (443)
-.++|+.|.+..+.....+....... ..++.+-+..+.+.+. .-...+.++++..+.+.+=.+.....+. ...+|
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHh-hhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence 44678888888776554433333332 3444445555555544 3344555555555555443332111111 23455
Q ss_pred CCCeeecccC
Q 047097 418 NLQLLNLGGN 427 (443)
Q Consensus 418 ~L~~L~l~~n 427 (443)
.+..+.+.+|
T Consensus 847 ~~~~~~i~~~ 856 (889)
T KOG4658|consen 847 LLSTLTIVGC 856 (889)
T ss_pred cccccceecc
Confidence 5555666654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-10 Score=113.29 Aligned_cols=110 Identities=20% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+ ..++.+++|+.|+|++|.+++.+|..+..+ ++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L-~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSFNGSIPESLGQL-TSL 492 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCCCCCCchHHhcC-CCC
Confidence 6677777777777777777777777777777777776666 556777777777777777777777777765 677
Q ss_pred CEEeCcCCcCcccCchhhhcc-cCCCeecccccccccc
Q 047097 372 KQIAMGRNRISGTIPPEIRKL-VSLNWLTIDRNQLTGT 408 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 408 (443)
+.|++++|+++|.+|..+... .++..+++.+|.....
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 777787777777777777653 3566677777765433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-10 Score=120.53 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCCEEECCCCc--CcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNG--FLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
+.|++|-+..|. +....++.|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666665554 33223333555666666666665544456666666666666666666665 566666666666666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
++..+.....+|.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666554443444444456666666665443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-09 Score=73.87 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=48.2
Q ss_pred cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
++|+.|++++|+++...+..|.++++|++|++++|.++...|..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577888888888755556778888888888888888866667888888888888888875
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-10 Score=108.28 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEe
Q 047097 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLD 223 (443)
Q Consensus 144 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~ 223 (443)
.+..++.+.+..|.+.. +-..+..+.+|..|++.+|.+.. +...+..+++|+.|++++|.+.... .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 34455555566666552 22335556666666666666652 2222444555555555555544332 122223344445
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
+++|.+... ..+..++.|+.+++++|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh
Confidence 555444311 12223444444444444444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-09 Score=71.56 Aligned_cols=57 Identities=32% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
|++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444333333444444444444444443333333344444444444433
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-10 Score=110.42 Aligned_cols=180 Identities=23% Similarity=0.251 Sum_probs=123.6
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc----------ccCCccccCCCCCCEEecccCccc
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT----------GSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~----------~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
|-.++.+.+|+.|.+.++.+. .. ..+..--..|++|...+ .++ +.+..++. ..+|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-TA-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchh-hh-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 666788889999999988876 21 11110012334443221 111 11222111 136788888888886
Q ss_pred ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcc
Q 047097 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG 383 (443)
Q Consensus 304 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 383 (443)
.+...+.-++.++.|+|+.|+++.. ..+..|++|++|||++|.+. .+|..-... -.|+.|.+++|.++.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNLRNNALTT 246 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhc-cccccchhh-hhheeeeecccHHHh
Confidence 4555677788999999999988653 45788999999999999998 666532222 349999999999883
Q ss_pred cCchhhhcccCCCeeccccccccccC-chhccCCCCCCeeecccCcCc
Q 047097 384 TIPPEIRKLVSLNWLTIDRNQLTGTI-PPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~ 430 (443)
. ..+.++.+|+.||+++|-+.+.- -+-++.+..|+.|+|.||++-
T Consensus 247 L--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 L--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3 46889999999999999887532 223556778999999999874
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-09 Score=106.45 Aligned_cols=248 Identities=24% Similarity=0.273 Sum_probs=166.4
Q ss_pred cCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEE
Q 047097 167 GGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246 (443)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 246 (443)
..+..++.+++..|.+.. +-..+..+++|+.+++..|.+......+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 345667777788887763 344577788888999998888777665778888889999988887443 35666778888
Q ss_pred EcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 247 SLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 247 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
++++|.+. .+.... .++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 146 ~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 88888887 443321 47888888888888874333 1 46777888888888877632 223444455555777777
Q ss_pred CCCcCCCchhhhhhhcCCC--CCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccc
Q 047097 326 LGTGTANELDFINLLTNCS--KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 403 (443)
+....+ +.... .|+.+++++|++. ..+..+... ..+..+++..|.+... ..+.....+..+...+|
T Consensus 220 i~~~~~--------l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~-~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 220 ISKLEG--------LNELVMLHLRELYLSGNRIS-RSPEGLENL-KNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred ceeccC--------cccchhHHHHHHhcccCccc-ccccccccc-ccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 654433 22222 3788888888887 333333332 6678888888877643 23555666777777777
Q ss_pred ccccc---Cchh-ccCCCCCCeeecccCcCccccCc
Q 047097 404 QLTGT---IPPE-IGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 404 ~~~~~---~p~~-~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
.+... .... ....+.++...+.+|++....+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 288 KLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhcchhhhhccccccccccccccccccCcccccccc
Confidence 66521 1222 45567888888998888766654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-09 Score=94.21 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=95.4
Q ss_pred cCcEEecccCcCCCC-CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCc-Ccc-cCCccccCCCCCCE
Q 047097 218 NLLLLDIAFNHFSGT-IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNN-FTG-SIPVSLSNASRLEM 294 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~~~~L~~ 294 (443)
.|+++|++...++.. +...+.+|.+|+.|.+.++++.+.+-..++ ...+|+.|+++.+. +++ .....+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 467777776666522 223345667777777777776666655555 56667777776653 221 11122456677777
Q ss_pred EecccCcccccCCcc-cc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhccCC
Q 047097 295 IEFSRNQFSGRVSVD-FS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSSTI 371 (443)
Q Consensus 295 L~l~~n~l~~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L 371 (443)
|++++|.+....... .. --++|+.|+++++.-.-.. . ........||+|..|||++| .++......++++ +.|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-S--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYL 340 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-h--HHHHHHHhCCceeeeccccccccCchHHHHHHhc-chh
Confidence 777777554322111 11 1255666666654221100 0 12233456677777777766 4443333344443 556
Q ss_pred CEEeCcCCcCcccCchh---hhcccCCCeeccccc
Q 047097 372 KQIAMGRNRISGTIPPE---IRKLVSLNWLTIDRN 403 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n 403 (443)
++|.++.|..- +|.. +...++|.+|++-++
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 66666666532 3332 345566666666655
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-08 Score=88.76 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=111.5
Q ss_pred CCcCcEEecccCcCCCC--CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCccc-CCccccCCCCC
Q 047097 216 LRNLLLLDIAFNHFSGT--IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS-IPVSLSNASRL 292 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L 292 (443)
...++++|+.+|.++.. +...+.++|.|++|+++.|.+...|...-. ...+|+.|.+.+..+... ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666766666532 333455677777777777766533322211 456777887777776533 23345667777
Q ss_pred CEEecccCccccc--CCccccC-CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc
Q 047097 293 EMIEFSRNQFSGR--VSVDFSR-LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 369 (443)
Q Consensus 293 ~~L~l~~n~l~~~--~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 369 (443)
++|+++.|.+... ....... -+.+++|+.-.|...... .....-..+|++..+.+..|+++..-...-+.-.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL----NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH----HHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 8888877743211 0011111 124444444433221000 00012234577777778888776433322222235
Q ss_pred CCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCch------hccCCCCCCeeec
Q 047097 370 TIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPP------EIGELKNLQLLNL 424 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~l 424 (443)
.+..|+++.|++..- --+.+.++++|..|.++++.+.+.+-. -++.+++++.|+=
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 566777888877632 224567788888888888877643221 2456777777653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.4e-08 Score=83.00 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=55.0
Q ss_pred cccCCCCCcEEeccccccCCCCC----ccccCCCCCCEEEccCCcCcccc-----------ccccCCCcCcEEecccCcC
Q 047097 165 AIGGLFKLERLFIFHNHITGQLP----ASIGNLSSLLAFDVRENILWGRI-----------DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~-----------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..+..+++++|.+...-. ..+.+-.+|+..+++.-...... ..+.++++|+.++++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788888888887764322 23445566777766653222111 3455677777777777777
Q ss_pred CCCCChh----hhCCCCCcEEEcccCCCC
Q 047097 230 SGTIPPP----IFNISSLEVISLSENRFT 254 (443)
Q Consensus 230 ~~~~~~~----l~~~~~L~~L~l~~n~~~ 254 (443)
....|.. +++.+.|.+|.+++|.+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6555543 345566777777777654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-08 Score=86.98 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCCCcEEeccccccee--ccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcC
Q 047097 144 RCSNLIELFVDTNYLVG--EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNL 219 (443)
Q Consensus 144 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L 219 (443)
.++.++.+++.+|.++. .+...+.++++|++|+++.|.+...+...-....+|+.|-+.+..+.... ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44666777777776653 23334567777777777777776444332234556677777666554433 455566677
Q ss_pred cEEecccCcC
Q 047097 220 LLLDIAFNHF 229 (443)
Q Consensus 220 ~~L~l~~n~~ 229 (443)
++|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777776643
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-09 Score=93.30 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=41.7
Q ss_pred CcEEecccccceec-cCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC-cCcccc--ccccCCCcCcEEe
Q 047097 148 LIELFVDTNYLVGE-IPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI--DSLVQLRNLLLLD 223 (443)
Q Consensus 148 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~--~~l~~l~~L~~L~ 223 (443)
|+++|++...++.. +-..+..+.+|+.|.+.++.+.+.+...+++-.+|+.++++.+ +++... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55666655554421 2223445556666666666555555555555555555555554 222222 2344455555555
Q ss_pred cccCcCC
Q 047097 224 IAFNHFS 230 (443)
Q Consensus 224 l~~n~~~ 230 (443)
++++.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-09 Score=100.17 Aligned_cols=179 Identities=22% Similarity=0.266 Sum_probs=114.4
Q ss_pred ccccCCCcCcEEecccCcCCCCCChhhhCC-CCCcEEEcccCC---------CCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIFNI-SSLEVISLSENR---------FTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~---------~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
-.+..+.+|++|.+.++++... ..+..+ ..|++|..++.- -.|.+.... ....|...+.++|.+.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV- 177 (1096)
T ss_pred ceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH-
Confidence 4566788999999999987621 111111 223333322210 001121111 2345777788888877
Q ss_pred cCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccC
Q 047097 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL 360 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 360 (443)
....++.-++.++.|+|++|+++... .+..+++|+.|||++|.++.... ....+|. |..|++++|.++ ++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~-L~~L~lrnN~l~-tL 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCK-LQLLNLRNNALT-TL 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccc------cchhhhh-heeeeecccHHH-hh
Confidence 56667777788888888888887543 56788888888888888866543 3344454 888888888887 22
Q ss_pred chhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeecccccccc
Q 047097 361 PHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 361 p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
..+.++ .+|+.||+++|-+.+. -..-+..+..|+.|.|.||.+-
T Consensus 248 -~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 -RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 345554 7788888888877653 1123556777888888888765
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-08 Score=85.06 Aligned_cols=242 Identities=17% Similarity=0.163 Sum_probs=131.5
Q ss_pred cCCCCCcEEecccccceeccCc----cccCCCCCcEEecccccc---CCCCC-------ccccCCCCCCEEEccCCcCcc
Q 047097 143 SRCSNLIELFVDTNYLVGEIPA----AIGGLFKLERLFIFHNHI---TGQLP-------ASIGNLSSLLAFDVRENILWG 208 (443)
Q Consensus 143 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~n~~~~ 208 (443)
..+..+..+++++|.+.....+ .+.+-.+|+..++++-.. .+.++ ..+.+|++|+..+++.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467888999999988754443 345566788887765321 11222 346688999999999987654
Q ss_pred cc-----ccccCCCcCcEEecccCcCCCC----CChhh---------hCCCCCcEEEcccCCCCccCchhhh----cCCC
Q 047097 209 RI-----DSLVQLRNLLLLDIAFNHFSGT----IPPPI---------FNISSLEVISLSENRFTGSLPVDTG----VNLP 266 (443)
Q Consensus 209 ~~-----~~l~~l~~L~~L~l~~n~~~~~----~~~~l---------~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~ 266 (443)
.. +.+++...|.+|.+++|.+... +...+ +.-|.|++++...|++. ..+.... ....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 33 4567778899999999887522 11111 23456777777777665 3332211 1123
Q ss_pred CccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCC
Q 047097 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346 (443)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 346 (443)
.|+++.+..|.+. |..+.. | ....+..+.+|+.||+..|.++-... ......+...+.|
T Consensus 186 ~lk~vki~qNgIr---pegv~~------L----------~~~gl~y~~~LevLDlqDNtft~~gS--~~La~al~~W~~l 244 (388)
T COG5238 186 NLKEVKIQQNGIR---PEGVTM------L----------AFLGLFYSHSLEVLDLQDNTFTLEGS--RYLADALCEWNLL 244 (388)
T ss_pred CceeEEeeecCcC---cchhHH------H----------HHHHHHHhCcceeeeccccchhhhhH--HHHHHHhcccchh
Confidence 5555555555443 221100 0 00012344555555555555443221 1222344555556
Q ss_pred CEEEccCCcccccCchhHHhh-----ccCCCEEeCcCCcCcccCchh-----h--hcccCCCeecccccccc
Q 047097 347 ERLYFNRNRFEGELPHSVANL-----SSTIKQIAMGRNRISGTIPPE-----I--RKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 347 ~~L~Ls~n~l~~~~p~~~~~~-----~~~L~~L~l~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~ 406 (443)
+.|.+.+|-++......+... .++|..|...+|...+.+... + ..++-|..|.+.+|+|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 666666666654444333221 256666666666555432211 1 24556666777777766
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=57.89 Aligned_cols=39 Identities=56% Similarity=1.031 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCCCceeeeeeC
Q 047097 32 ETDRLALLAIKSQLH-DPLGVTSSWNNS--MNLCQWTGVICG 70 (443)
Q Consensus 32 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~~~~c~ 70 (443)
++|++||++||.++. +|...+.+|+.+ .++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 678999999999999 577889999987 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-08 Score=75.16 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=51.9
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
....|+..++++|.+....+ ..-..++.++.|++++|.+. .+|..+..+ +.|+.|+++.|.+. ..|+.+..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~neis-dvPeE~Aam-~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPK------KFTIKFPTATTLNLANNEIS-DVPEELAAM-PALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred CCceEEEEecccchhhhCCH------HHhhccchhhhhhcchhhhh-hchHHHhhh-HHhhhcccccCccc-cchHHHHH
Confidence 33444444555555443332 22233344555555555555 445544443 44555555555554 44444444
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
+.++-.|+..+|.+. .+|-.+-.-...-..++.++++.+.-|..
T Consensus 122 L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 555555555555444 33333222222223344444554444443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-07 Score=73.01 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=64.0
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 417 (443)
..+.....|+..+|++|.++ .+|..+...++.++.|++++|+++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.
T Consensus 47 y~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~ 123 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI 123 (177)
T ss_pred HHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH
Confidence 34445556677777777777 666666665566777777777777 56666777777777777777777 6666666677
Q ss_pred CCCeeecccCcCccccC
Q 047097 418 NLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~~p 434 (443)
+|-.|+..+|... ++|
T Consensus 124 ~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 124 KLDMLDSPENARA-EID 139 (177)
T ss_pred hHHHhcCCCCccc-cCc
Confidence 7777777777665 444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=53.85 Aligned_cols=37 Identities=41% Similarity=0.650 Sum_probs=24.5
Q ss_pred cCCCeeccccccccccCchhccCCCCCCeeecccCcCc
Q 047097 393 VSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 393 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777777 56666777777777777777776
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=74.54 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=71.2
Q ss_pred ccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC-cCcccCCccccCCCC
Q 047097 213 LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN-NFTGSIPVSLSNASR 291 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~ 291 (443)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.-...+|..+ +++|++|++.+| .+. .+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 334577778888877665 4441 23457777777754333555432 356777777777 333 3443 4
Q ss_pred CCEEecccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
|+.|++..+.... +..+ ++|+.|.+.+++...... ..-.-.++|++|++++|... ..|.. ++.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~------lp~~LPsSLk~L~Is~c~~i-~LP~~---LP~S 178 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQAR------IDNLISPSLKTLSLTGCSNI-ILPEK---LPES 178 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccc------cccccCCcccEEEecCCCcc-cCccc---cccc
Confidence 5666666554321 1122 245566654322110000 00011256777777776654 33332 2345
Q ss_pred CCEEeCcCC
Q 047097 371 IKQIAMGRN 379 (443)
Q Consensus 371 L~~L~l~~n 379 (443)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777777655
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=66.03 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc-Cchhhhccc
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLV 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~ 393 (443)
....+|+++|.+... ..+..++.|.+|.+.+|.++ .+...+....++|+.|.+.+|.+... .-+-+..|+
T Consensus 43 ~~d~iDLtdNdl~~l--------~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--------DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchhhc--------ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 344555555555332 22455556666666666666 34444555456666666666665532 122355677
Q ss_pred CCCeeccccccccccC---chhccCCCCCCeeeccc
Q 047097 394 SLNWLTIDRNQLTGTI---PPEIGELKNLQLLNLGG 426 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~ 426 (443)
+|++|.+-+|+.+..- --.+..+|+|+.||+++
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777777777766221 11245677777777764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.635 Sum_probs=24.8
Q ss_pred CCCEEeCcCCcCcccCchhhhcccCCCeecccccccc
Q 047097 370 TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+|+.|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 45656777777777777777776
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.3e-05 Score=70.90 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=91.9
Q ss_pred hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccC-cccccCCccccCCCC
Q 047097 237 IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN-QFSGRVSVDFSRLKN 315 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 315 (443)
+..+.+++.|++++|.++ .+|. -+++|++|.+++|.-...+|..+ .++|++|++++| .+. .+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 445788999999999888 7872 35679999999865544667655 368999999998 443 333 35
Q ss_pred CCEEECCCCcCCCcCCCchhhhhhhcCC-CCCCEEEccCCc-cc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcc
Q 047097 316 LSWLNMGINNLGTGTANELDFINLLTNC-SKLERLYFNRNR-FE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKL 392 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~Ls~n~-l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 392 (443)
|+.|+++.+.... +..+ ++|+.|.+.++. .. ..+| ..++++|+.|++++|... ..|..+.
T Consensus 114 Le~L~L~~n~~~~-----------L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 114 VRSLEIKGSATDS-----------IKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred cceEEeCCCCCcc-----------cccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--
Confidence 7888887655422 1122 467888875432 11 1112 124578999999998866 4454443
Q ss_pred cCCCeecccccc
Q 047097 393 VSLNWLTIDRNQ 404 (443)
Q Consensus 393 ~~L~~L~l~~n~ 404 (443)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 588899988763
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.7e-06 Score=83.76 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCE
Q 047097 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSW 318 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 318 (443)
+|+|+.|.+.+-.+...--..+..++|+|..||+++.+++.. ..++.+++|+.|.+.+-.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554433111112233556666666666555522 344555555555555444432 11122445556666
Q ss_pred EECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 319 LNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
||+|.........-...+.+.-..+|+|+.||.|++.+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 66655443322211112223333455666666665555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.6e-07 Score=83.18 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCEEECCCCcCccc--CCcccCCCCCCCEEEccCCc-CCCCCCccc-cCCCCCcEEeccccc-ceeccCc-cccCCCCC
Q 047097 99 FLRYINLANNGFLGE--IPPQIGRQDMLEGLVLSNNS-FSGTIPTNL-SRCSNLIELFVDTNY-LVGEIPA-AIGGLFKL 172 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~L 172 (443)
.|+.|.+.++.-.+. +-..-..++++++|++.++. +++..-..+ ..+++|+++++..|. ++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455555555432221 11222345555555555553 221111112 245556666665532 2222111 12345566
Q ss_pred cEEecccc
Q 047097 173 ERLFIFHN 180 (443)
Q Consensus 173 ~~L~l~~n 180 (443)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.6e-05 Score=63.52 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=35.7
Q ss_pred ccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCC-CccccCCCCCCEEEccCCcCcccc----ccccCC
Q 047097 142 LSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQL-PASIGNLSSLLAFDVRENILWGRI----DSLVQL 216 (443)
Q Consensus 142 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~----~~l~~l 216 (443)
|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|++.... -..+..|++|++|.+.+|...... ..+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 334455555555555555333322223344555555555443110 112334444555544444433222 233444
Q ss_pred CcCcEEecc
Q 047097 217 RNLLLLDIA 225 (443)
Q Consensus 217 ~~L~~L~l~ 225 (443)
++|+.||.+
T Consensus 140 p~l~~LDF~ 148 (233)
T KOG1644|consen 140 PSLRTLDFQ 148 (233)
T ss_pred CcceEeehh
Confidence 444444444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.3e-05 Score=80.01 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=98.6
Q ss_pred CCCcEEEcccCCC-CccCchhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccCcccccCCccccCCCCCCE
Q 047097 241 SSLEVISLSENRF-TGSLPVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSW 318 (443)
Q Consensus 241 ~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+|++|+++|... ...-|..++..+|+|+.|.+.+-.+.. .+.....++|+|..||+++..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677777777542 234455667788999999999877752 2333446789999999999988743 45788899999
Q ss_pred EECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHh------hccCCCEEeCcCCcCcccCchhh-hc
Q 047097 319 LNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN------LSSTIKQIAMGRNRISGTIPPEI-RK 391 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------~~~~L~~L~l~~n~l~~~~~~~l-~~ 391 (443)
|.+.+-.+... .-...+-.+++|+.||+|...... .+..+.. ..|+|+.||.|+..+.+.+-+.+ ..
T Consensus 200 L~mrnLe~e~~-----~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 200 LSMRNLEFESY-----QDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HhccCCCCCch-----hhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 88876655431 112456778999999999876652 2222221 13677777777776665433332 23
Q ss_pred ccCCCeecc
Q 047097 392 LVSLNWLTI 400 (443)
Q Consensus 392 l~~L~~L~l 400 (443)
-++|+.+.+
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 344444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00075 Score=53.81 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=31.0
Q ss_pred cccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCC
Q 047097 93 YVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKL 172 (443)
Q Consensus 93 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 172 (443)
.|.++++|+.+.+.. .+...-..+|..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 233333344555555555555443 3323333344444555555543 2221222334444455
Q ss_pred cEEeccc
Q 047097 173 ERLFIFH 179 (443)
Q Consensus 173 ~~L~l~~ 179 (443)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5554433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00046 Score=55.04 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred ccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +..... ..+..+++++.+.+.+ .+. .++...+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce------eeeecccccccccccc-ccc-ccccccc
Confidence 33444444444442 233333333444444555555442 322222 3344444455555543 222 2222222
Q ss_pred hhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc
Q 047097 366 NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
..+++++.+++..+ +...-...+.++ +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 22244555554433 222222334443 555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=7.6e-06 Score=75.35 Aligned_cols=279 Identities=16% Similarity=0.110 Sum_probs=163.4
Q ss_pred CCcEEecccccceeccC--ccccCCCCCcEEeccccc-cCCCCCcc-ccCCCCCCEEEccCCcC-cccc--ccccCCCcC
Q 047097 147 NLIELFVDTNYLVGEIP--AAIGGLFKLERLFIFHNH-ITGQLPAS-IGNLSSLLAFDVRENIL-WGRI--DSLVQLRNL 219 (443)
Q Consensus 147 ~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~~-~~~~--~~l~~l~~L 219 (443)
-|+.|.+.++.-.+.-+ ..-..++++++|.+.++. +++..-.. -..|++|+.+++..|.. +... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777887776432222 233567888888888775 22221112 24678888888888533 3222 234567888
Q ss_pred cEEecccCcC-CCC-CChhhhCCCCCcEEEcccCCCC-ccCchhhhcCCCCccEEeCCCCcCcccCC--ccccCCCCCCE
Q 047097 220 LLLDIAFNHF-SGT-IPPPIFNISSLEVISLSENRFT-GSLPVDTGVNLPNLRQLSPNGNNFTGSIP--VSLSNASRLEM 294 (443)
Q Consensus 220 ~~L~l~~n~~-~~~-~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~ 294 (443)
++++++++.- ++. +.....++..++.+...||.-. .+.-.........+.++++..|....... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8998888742 221 2223344566677666665311 01111122245556677766664321111 11235678888
Q ss_pred EecccCccc-ccCCccc-cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccC-chhHHhhccCC
Q 047097 295 IEFSRNQFS-GRVSVDF-SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL-PHSVANLSSTI 371 (443)
Q Consensus 295 L~l~~n~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~~L 371 (443)
++.+++... +..-..+ .+.++|+.+.++.+..-+ +..+...-.+++.|+.+++.++...-.. -..+...++.|
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 988887443 2222223 467899999998875311 1112223356788999999888544222 22334446789
Q ss_pred CEEeCcCCc-Cccc----CchhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecccCcC
Q 047097 372 KQIAMGRNR-ISGT----IPPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 372 ~~L~l~~n~-l~~~----~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
+.+.++++. +++. ....-+....|+.+.++++..+ +..-+.+..+++|+++++-+++-
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999999885 3332 1223356778889999998655 34455567788999998888754
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00047 Score=60.10 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=34.5
Q ss_pred cCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCC--cCCCCCCccccCCCCCcEEecccccce
Q 047097 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNN--SFSGTIPTNLSRCSNLIELFVDTNYLV 159 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~ 159 (443)
+......+..|+.|++.+..++. -..+-.+++|++|.++.| ++.+.++.....+|+|+++.+++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33334445555555555555441 112334555666666666 444444444445566666666666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00012 Score=72.91 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=25.7
Q ss_pred CCcCcEEecccCc-CCCCCChhhhC-CCCCcEEEcccCC-CCccCchhhhcCCCCccEEeCCCCc
Q 047097 216 LRNLLLLDIAFNH-FSGTIPPPIFN-ISSLEVISLSENR-FTGSLPVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 216 l~~L~~L~l~~n~-~~~~~~~~l~~-~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 277 (443)
+++|+.++++++. +++.....++. +++|++|.+.++. +++..-..+...++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3444455554444 33222222222 4455555544443 3322223333344455555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.001 Score=58.03 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc--cceeccCccccCCCCCcEEeccccccC
Q 047097 121 QDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN--YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 121 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
+..|+.+++.+..++ .-..+..+++|++|.++.| .+.+.++.-...+++|+++++++|++.
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444333 1122333445555555555 222222222223344444444444443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00021 Score=62.65 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccC--chhccCCCCCC
Q 047097 343 CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTI--PPEIGELKNLQ 420 (443)
Q Consensus 343 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~ 420 (443)
+.+.+.|+..+|.+.+ ..++.-++.|+.|.||-|.|+.. ..+..|++|++|+|+.|.|. .+ ..++.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 3456677777777762 23444457788888888887743 34778888888888888777 33 23567788888
Q ss_pred eeecccCcCccccCc
Q 047097 421 LLNLGGNFLQGSIPS 435 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~ 435 (443)
.|+|..|+-.|.-+.
T Consensus 92 ~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQ 106 (388)
T ss_pred hHhhccCCcccccch
Confidence 888888888776654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00011 Score=64.40 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEE
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 319 (443)
.+.+.|+.-|+.+. .| .+...++.|+.|.|+-|.++. ...+..|++|++|+|..|.|.+.. -..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666665 23 233367777888888877763 233667888888888888776422 1235678888888
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEE
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLY 350 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 350 (443)
.|..|...+..+.... ...+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYR-RKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHH-HHHHHHcccchhcc
Confidence 8888877665543332 24566777887776
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00043 Score=68.89 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=18.5
Q ss_pred hhhcccCCCeeccccccccccC-chhccCCCCC
Q 047097 388 EIRKLVSLNWLTIDRNQLTGTI-PPEIGELKNL 419 (443)
Q Consensus 388 ~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L 419 (443)
.+..++.++.+.+..+...... -..+..++.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4567777777777777644222 2344455555
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00075 Score=35.10 Aligned_cols=20 Identities=60% Similarity=0.866 Sum_probs=12.2
Q ss_pred CCeeecccCcCccccCccccC
Q 047097 419 LQLLNLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~ 439 (443)
|++||+++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 56655554
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=4.4e-05 Score=74.57 Aligned_cols=182 Identities=21% Similarity=0.186 Sum_probs=105.2
Q ss_pred CCCcEEecccccceeccC----ccccCCCCCcEEeccccccCCCCCccc----cCC-CCCCEEEccCCcCcccc-----c
Q 047097 146 SNLIELFVDTNYLVGEIP----AAIGGLFKLERLFIFHNHITGQLPASI----GNL-SSLLAFDVRENILWGRI-----D 211 (443)
Q Consensus 146 ~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~-----~ 211 (443)
..+.++.+.+|.+..... ..+...+.|+.|++++|.+.+.-...+ ... ..++.|++..|.+.... .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 347888888888764433 345677889999999998874322222 121 34556667666665443 3
Q ss_pred cccCCCcCcEEecccCcCCC----CCChhhh----CCCCCcEEEcccCCCCccC----chhhhcCCCC-ccEEeCCCCcC
Q 047097 212 SLVQLRNLLLLDIAFNHFSG----TIPPPIF----NISSLEVISLSENRFTGSL----PVDTGVNLPN-LRQLSPNGNNF 278 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~----~~~~~l~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~-L~~L~l~~n~l 278 (443)
.+.....++.++++.|.+.. .++..+. ...++++|++++|.++... ...+. ..++ +.++++..|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-SGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-ccchhhHHHHHHhcCc
Confidence 45556777777887777631 1222222 3566777777777665211 11111 2233 55577777766
Q ss_pred ccc----CCccccCC-CCCCEEecccCcccccCCc----cccCCCCCCEEECCCCcCCC
Q 047097 279 TGS----IPVSLSNA-SRLEMIEFSRNQFSGRVSV----DFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 279 ~~~----~~~~l~~~-~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+. ....+..+ ..+++++++.|++++.... .+..+++++++.++.|.+..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 532 12223334 5667777777777643332 34556677777777776654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0032 Score=32.67 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=10.8
Q ss_pred CCeeccccccccccCchhcc
Q 047097 395 LNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 395 L~~L~l~~n~~~~~~p~~~~ 414 (443)
|++|++++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666665 5555544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.00031 Score=68.71 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCEEEccCCcCcccc-----ccccCCCcCcEEecccCcCC
Q 047097 196 LLAFDVRENILWGRI-----DSLVQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 196 L~~L~l~~n~~~~~~-----~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..+.+.+|.+.... ..+.....|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 555666666554333 33445555666666666655
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.0016 Score=55.77 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=73.0
Q ss_pred hhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCC
Q 047097 339 LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418 (443)
Q Consensus 339 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 418 (443)
.+......+.||++.|++. ..-..+..+ +.+..++++.|++. ..|..+.....+..+++..|..+ ..|.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~-t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSIL-TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHH-HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445566777777777665 333344443 56778888988887 78888888888889999888888 88999999999
Q ss_pred CCeeecccCcCccccCccccCC
Q 047097 419 LQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l 440 (443)
++.+++.+|++...+-...+.|
T Consensus 113 ~k~~e~k~~~~~~~~~~~v~~c 134 (326)
T KOG0473|consen 113 PKKNEQKKTEFFRKLFGFVWSC 134 (326)
T ss_pred cchhhhccCcchHHHHhHhhhh
Confidence 9999999998875544444444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.028 Score=26.99 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=6.0
Q ss_pred CCCeeecccCcCc
Q 047097 418 NLQLLNLGGNFLQ 430 (443)
Q Consensus 418 ~L~~L~l~~n~l~ 430 (443)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.012 Score=49.41 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.0
Q ss_pred ccCCCEEeCcCC-cCcccCchhhhcccCCCeecccc
Q 047097 368 SSTIKQIAMGRN-RISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 368 ~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
.++|+.|++++| .||+..-.++..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 355666666655 36655556666777777776654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.019 Score=30.40 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=9.6
Q ss_pred CCCCeeecccCcCccccCcc
Q 047097 417 KNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|+.|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45556666666655544433
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.11 Score=27.40 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.3
Q ss_pred CCCCEEEccCCcccc
Q 047097 344 SKLERLYFNRNRFEG 358 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~ 358 (443)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.004 Score=53.43 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.||++.|.+.. .-..|.-++.+..|+++.|.+. .+|..++....++.+++..|..+ ..|.++...++++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 566666666665542 2233445555666666666654 45555555555666666555555 55666666666666655
Q ss_pred ccccc
Q 047097 154 DTNYL 158 (443)
Q Consensus 154 ~~n~~ 158 (443)
-.+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.4 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=9.9
Q ss_pred CCCCEEEccCCcccccCchh
Q 047097 344 SKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~ 363 (443)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.4 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=9.9
Q ss_pred CCCCEEEccCCcccccCchh
Q 047097 344 SKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~ 363 (443)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.42 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=12.2
Q ss_pred CCCcEEEcccCCCCccCchhhh
Q 047097 241 SSLEVISLSENRFTGSLPVDTG 262 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~ 262 (443)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.42 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=12.2
Q ss_pred CCCcEEEcccCCCCccCchhhh
Q 047097 241 SSLEVISLSENRFTGSLPVDTG 262 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~ 262 (443)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.2 Score=42.41 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhcc
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSS 369 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~ 369 (443)
.++.++-++..|.......+..++.++.|.+..+.--+ ++.+-..-+..++|+.|+|++| +|++..-.++..+ +
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d----D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-k 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD----DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-K 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh----hHHHHHhcccccchheeeccCCCeechhHHHHHHHh-h
Confidence 34555555555554444444455555555554432211 1111111113356666666665 4554444444443 5
Q ss_pred CCCEEeCcC
Q 047097 370 TIKQIAMGR 378 (443)
Q Consensus 370 ~L~~L~l~~ 378 (443)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 443 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-29 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-29 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-20 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-06 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 1e-09 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 4e-09 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 1e-07 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-07 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 2e-07 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 2e-07 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 3e-07 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 5e-05 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 5e-05 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 5e-05 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 9e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 294 bits (756), Expect = 2e-92
Identities = 113/372 (30%), Positives = 185/372 (49%), Gaps = 15/372 (4%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
LD+ + + + P++G+ S L++++++ N G+ I L+ L +S+N F G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG-LFKLERLFIFHNHITGQLPASIGNLSS 195
IP +L L + N GEIP + G L L + NH G +P G+ S
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 196 LLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIPPPIFNIS-SLEVISLSENR 252
L + + N G + D+L+++R L +LD++FN FSG +P + N+S SL + LS N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 253 FTGSLPVDTGVN-LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
F+G + + N L++L N FTG IP +LSN S L + S N SG +
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371
L L L + +N L G L LE L + N GE+P ++N ++ +
Sbjct: 440 SLSKLRDLKLWLNML-EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-L 492
Query: 372 KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431
I++ NR++G IP I +L +L L + N +G IP E+G+ ++L L+L N G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 432 SIPSSLGNLTLL 443
+IP+++ +
Sbjct: 553 TIPAAMFKQSGK 564
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 1e-89
Identities = 122/473 (25%), Positives = 201/473 (42%), Gaps = 68/473 (14%)
Query: 28 ANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-------------- 73
+ S + L++ K L D + W+++ N C + GV C
Sbjct: 7 SQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVG 65
Query: 74 ----------------------------------QRVTRLDLRNQSIGGTLSPYV--GNL 97
+T LDL S+ G ++ G+
Sbjct: 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125
Query: 98 SFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNSFSGTIPTNL---SRCSNLIELFV 153
S L+++N+++N G + + LE L LS NS SG C L L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DS 212
N + G++ + LE L + N+ + +P +G+ S+L D+ N L G +
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA 242
Query: 213 LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLS 272
+ L LL+I+ N F G IPP + SL+ +SL+EN+FTG +P L L
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSWLNMGINNLGTGTA 331
+GN+F G++P + S LE + S N FSG + +D +++ L L++ N +G
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGEL 359
Query: 332 NELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS-STIKQIAMGRNRISGTIPPEIR 390
E +L + L L + N F G + ++ +T++++ + N +G IPP +
Sbjct: 360 PE----SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 391 KLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L L + N L+GTIP +G L L+ L L N L+G IP L + L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 2e-79
Identities = 112/371 (30%), Positives = 174/371 (46%), Gaps = 14/371 (3%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSF-LRYINLANNGFLGEIPPQIGRQDM--LEGLVLSNNS 133
LDL G L + NLS L ++L++N F G I P + + L+ L L NN
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
F+G IP LS CS L+ L + NYL G IP+++G L KL L ++ N + G++P + +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 194 SSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENR 252
+L + N L G I L NL + ++ N +G IP I + +L ++ LS N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 253 FTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312
F+G++P + G + +L L N N F G+IP ++ S + N +G+ V
Sbjct: 526 FSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYIKN 580
Query: 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK 372
+ N L L S + G + N S +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRL----STRNPCNITSRVYGGHTSPTFDNNGS-MM 635
Query: 373 QIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432
+ M N +SG IP EI + L L + N ++G+IP E+G+L+ L +L+L N L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 433 IPSSLGNLTLL 443
IP ++ LT+L
Sbjct: 696 IPQAMSALTML 706
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 3e-79
Identities = 109/372 (29%), Positives = 174/372 (46%), Gaps = 15/372 (4%)
Query: 77 TRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGR-QDMLEGLVLSNNSF 134
L L + + G L + L+ ++L+ N F GE+P + L L LS+N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 135 SGTIPTNLSRC--SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGN 192
SG I NL + + L EL++ N G+IP + +L L + N+++G +P+S+G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 193 LSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251
LS L + N+L G I L+ ++ L L + FN +G IP + N ++L ISLS N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
R TG +P G L NL L + N+F+G+IP L + L ++ + N F+G +
Sbjct: 501 RLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371
+ + N + + + C N F+G + LS+
Sbjct: 560 KQ----SGKIAANFIAGKRYVYIKNDGMKKECH----GAGNLLEFQGIRSEQLNRLST-R 610
Query: 372 KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431
+ G P S+ +L + N L+G IP EIG + L +LNLG N + G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 432 SIPSSLGNLTLL 443
SIP +G+L L
Sbjct: 671 SIPDEVGDLRGL 682
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 8e-68
Identities = 103/395 (26%), Positives = 156/395 (39%), Gaps = 48/395 (12%)
Query: 55 WNNSMNL-------CQWTGVI----CGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYI 103
N S +L ++G I C + L L+N G + P + N S L +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 104 NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIP 163
+L+ N G IP +G L L L N G IP L L L +D N L GEIP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 164 AAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLL 222
+ + L + + +N +TG++P IG L +L + N G I L R+L+ L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 223 DIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVN-LPNLRQLSPNGNNFTGS 281
D+ N F+GTIP +F S ++ N G V + + + N F G
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341
L+ S + + G S F ++ +L+M
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS------------------- 640
Query: 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401
N G +P + ++ + + +G N ISG+IP E+ L LN L +
Sbjct: 641 -----------YNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 402 RNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436
N+L G IP + L L ++L N L G IP
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 9e-24
Identities = 35/141 (24%), Positives = 54/141 (38%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
G S + LS N+ + + G P + L +S N SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P + L L + N + G IP +G L L L + N + G++P ++ L+ L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 199 FDVRENILWGRIDSLVQLRNL 219
D+ N L G I + Q
Sbjct: 709 IDLSNNNLSGPIPEMGQFETF 729
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 8e-76
Identities = 83/303 (27%), Positives = 126/303 (41%), Gaps = 12/303 (3%)
Query: 31 NETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRHQ--RVTRLDLRNQSI 86
N D+ ALL IK L +P SSW + + C W GV+C Q RV LDL ++
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 87 GGT--LSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLS 143
+ + NL +L ++ + N +G IPP I + L L +++ + SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF-DVR 202
+ L+ L N L G +P +I L L + N I+G +P S G+ S L +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 203 ENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262
N L G+I NL +D++ N G + + + I L++N L
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KV 240
Query: 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322
NL L N G++P L+ L + S N G + L+
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299
Query: 323 INN 325
N
Sbjct: 300 NNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 8e-49
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGT--IPPPIFNISSLEVISLS-ENRFTGSLPVDTGVNLPN 267
D+ Q + LD++ + IP + N+ L + + N G +P L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQ 102
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L L N +G+IP LS L ++FS N SG + S L NL + N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI- 161
Query: 328 TGTANELDFI-NLLTNCSKLER-LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385
+G I + + SKL + +RNR G++P + ANL+ + + + RN + G
Sbjct: 162 SGA------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDA 213
Query: 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ + + +N L + ++G KNL L+L N + G++P L L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 10/168 (5%)
Query: 281 SIPVSLSNASRL----EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
I L N + L + + G + ++ ++ L++ NL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL-PKPYPIPSS 71
Query: 337 INLLTNCSKLERLYF-NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSL 395
+ N L LY N G +P ++A L+ + + + +SG IP + ++ +L
Sbjct: 72 L---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 396 NWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L N L+GT+PP I L NL + GN + G+IP S G+ + L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-26
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 3/161 (1%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFL-RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+ I G + G+ S L + ++ N G+IPP + L + LS N
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
G N ++ + N L ++ +G L L + +N I G LP + L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 196 LLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236
L + +V N L G I L+ + A N P P
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 1e-50
Identities = 71/411 (17%), Positives = 137/411 (33%), Gaps = 48/411 (11%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQD-------------- 122
T++ + +I +S V L+ LR + N+ F+ E + +
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 123 -----MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLV--------GEIPAAIGGL 169
L + + N +PT L + + V N + + A
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 170 FKLERLFIFHNHI-TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNH 228
K++ ++I +N++ T + S+ + L + N L G++ + L L++A+N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 229 FSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG------- 280
+ IP +E +S + N+ + ++ + + + N
Sbjct: 365 ITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL- 339
+ + + I S NQ S FS LS +N+ N L N L N
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 340 LTNCSKLERLYFNRNRFEGELPHSVANLS-STIKQIAMGRNRISGTIPPEIRKLVSLNWL 398
N L + N+ L + + I + N S P + +L
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541
Query: 399 TI------DRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
I N+ P I +L L +G N ++ N+++L
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 4e-50
Identities = 62/396 (15%), Positives = 121/396 (30%), Gaps = 43/396 (10%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF---- 134
+ T NL L + + N L ++P + ++ + ++ N
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 135 ----SGTIPTNLSRCSNLIELFVDTNYL-VGEIPAAIGGLFKLERLFIFHNHITGQLPAS 189
+ + +++ N L + ++ + KL L +N + G +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348
Query: 190 IGNLSSLLAFDVRENILWGRIDSLVQ-LRNLLLLDIAFNHFSGTIPPPIF--NISSLEVI 246
G+ L + ++ N + + + L A N IP ++S + I
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407
Query: 247 SLSENRFTG-------SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
S N L N+ ++ + N + S S L I
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 300 NQFSG-------RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
N + + +F L+ +++ N L T +++ T L + +
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA----TTLPYLVGIDLS 521
Query: 353 RNRFEGELPHSVANLSS-----TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407
N F P N S+ Q NR P I SL L I N +
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR- 579
Query: 408 TIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ +I N+ +L++ N S +
Sbjct: 580 KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 7e-47
Identities = 70/434 (16%), Positives = 134/434 (30%), Gaps = 66/434 (15%)
Query: 34 DRLALLAIKSQLHDP--------LGVTSSWNNSMNLCQWT---GVICGRRHQRVTRLDLR 82
D LAL I L+ ++WN + L W GV RVT L L
Sbjct: 31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLE 89
Query: 83 NQSIGGTLSPYVGNLSFLRYINLANN----GFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
G + +G L+ L + L ++ P I E + T
Sbjct: 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149
Query: 139 PTNLSR--CSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
R S+LI+ ++++ I + K ++ N+IT + ++ L+
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT-- 206
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
L + + F + + E + +
Sbjct: 207 ---------------------KLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKT 240
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-------- 308
+ NL +L + +P L +++I + N+ +
Sbjct: 241 EDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368
D + + + +G NNL T L KL L N+ EG+LP + +
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVET-----SLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353
Query: 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP--EIGELKNLQLLNLGG 426
+ + + N+I+ + L+ N+L IP + + + ++
Sbjct: 354 K-LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411
Query: 427 NFLQGSIPSSLGNL 440
N + + L
Sbjct: 412 NEIGSVDGKNFDPL 425
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 20/239 (8%)
Query: 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQL 271
SL + L + SG +P I ++ LEV++L + + + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 272 SP---NGNNFTGSIPVSLSNA--SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
++ + S L + + + + + NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 327 GTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP 386
+ +KL + Y + F E + + T
Sbjct: 196 TF-------VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTED 242
Query: 387 PEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG--SIPSSLGNLTLL 443
+ L L + + +P + L +QL+N+ N + L
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 3e-46
Identities = 64/460 (13%), Positives = 135/460 (29%), Gaps = 46/460 (10%)
Query: 15 SLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQ 74
L + R+ + L ++ +++N I
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 75 RVTRLDLRNQSIG-GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
+ + N + +S + L+ L+ I AN+ F +
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAK 478
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITG--------- 184
+ S +L ++ + + ++P + L +L+ L I N
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 185 QLPASIGNLSSLLAFDVRENILWGRIDS--LVQLRNLLLLDIAFNHFSGTIPPPIFNISS 242
+L + F + N L S L ++ L LLD N
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596
Query: 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP--VSLSNASRLEMIEFSRN 300
L + L N+ +P D + L + N IP + + + ++FS N
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654
Query: 301 QFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI--NLLTNCSKLERLYFNRNRFE- 357
+ + + +N L NE+ L S + + + N
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLS---YNEIQKFPTELFATGSPISTIILSNNLMTS 711
Query: 358 ------GELPHSVANLSSTIKQIAMGRNRISGTIPPEIR--KLVSLNWLTIDRNQLTGTI 409
+ N + I + N+++ ++ + R L L+ + + N + +
Sbjct: 712 IPENSLKPKDGNYKNTYL-LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SF 768
Query: 410 PPEIGELKNLQLLNL------GGNFLQGSIPSSLGNLTLL 443
P + L+ + GN + P+ + L
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-43
Identities = 63/476 (13%), Positives = 127/476 (26%), Gaps = 98/476 (20%)
Query: 27 CANSNETDRLALLAIKSQLH-----------DPLGVTSSWNNSMNLCQWTGVICGRRHQR 75
D AL AI L + + +WN + L W
Sbjct: 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD---- 318
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+ N + ++LA G G +P IG+ L+ L +S +
Sbjct: 319 ------------------LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360
Query: 136 GTIPTNLS------------------------------RCSNLIELFVDTNYLVGEIPAA 165
+ S+L++ ++ N + I
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIA 225
K ++ N IT + +I L+ L + + +
Sbjct: 421 SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSD 475
Query: 226 FNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG----- 280
+ N+ L + L LP +LP L+ L+ N
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLK 534
Query: 281 ----SIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLGTGTANELD 335
+ ++++ N S ++ L L+ N +
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH------- 587
Query: 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP--EIRKLV 393
+ KL L + N+ E E+P + ++ + N++ IP + +
Sbjct: 588 -LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644
Query: 394 SLNWLTIDRNQLTGTIPPEIG------ELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ + N++ I + N + L N +Q + +
Sbjct: 645 VMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 4e-43
Identities = 60/396 (15%), Positives = 119/396 (30%), Gaps = 44/396 (11%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG-- 136
+ NL L + L N + ++P + L+ L ++ N
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 137 -------TIPTNLSRCSNLIELFVDTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPA 188
+ + + ++ N L A++ + KL L HN + L
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE- 589
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQ-LRNLLLLDIAFNHFSGTIPPPIF--NISSLEV 245
+ G L + N + + + L + N IP ++ +
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648
Query: 246 ISLSENRFTGSLPVDTGVNLP-----NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
+ S N+ S + ++ N ++ + N + S + I S N
Sbjct: 649 VDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 301 QFS-------GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353
+ ++ L+ +++ N L T +++ L L + +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTL----PYLSNMDVSY 762
Query: 354 NRFEGELPHSVANLSS-----TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408
N F P N S Q NRI P I SL L I N +
Sbjct: 763 NCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-K 820
Query: 409 IPPEIGELKNLQLLNLGGN-FLQGSIPSSLGNLTLL 443
+ ++ L +L++ N + + S +
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAG 854
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 37/239 (15%), Positives = 59/239 (24%), Gaps = 37/239 (15%)
Query: 77 TRLDLRNQSIGG-----TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN 131
+D IG + S + L+ N + ++LSN
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 132 NSFS-------GTIPTNLSRCSNLIELFVDTNYLVGEIPAAI--GGLFKLERLFIFHNHI 182
N + N L + + N L + L L + + +N
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS 242
+ P N S L AF +R D N P I S
Sbjct: 766 SS-FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPS 807
Query: 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L + + N + P L L N S+ M ++
Sbjct: 808 LIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 8e-46
Identities = 66/388 (17%), Positives = 133/388 (34%), Gaps = 27/388 (6%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+T L+L + + + S L +++ N P + ML+ L L +N S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
+ C+NL EL + +N + L L + HN ++ + L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 196 LLAFDVRENILWGRID---SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENR 252
L + N + + +L L+++ N P I L + L+ +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 253 FTGSLPVDTGV--NLPNLRQLSPNGNNFTGSIPVSLSN--ASRLEMIEFSRNQFSGRVSV 308
SL + ++R LS + + + + + + L M++ S N + +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL-------- 360
F+ L L + + NN+ ++ L + L R+ + +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHS------LHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 361 -PHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG----E 415
S L ++ + M N I G L++L +L++ + +
Sbjct: 321 DDFSFQWLKC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 416 LKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L +LNL N + + L L
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHL 407
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-43
Identities = 69/392 (17%), Positives = 119/392 (30%), Gaps = 33/392 (8%)
Query: 75 RVTRLDLRNQSIGGTLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNN 132
+ L L N + T + L + L ++L+ N LE L N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 133 SFSGTIPTNLSRCSNLIELFVDTNYLVGEI---------PAAIGGLFKLERLFIFHNHIT 183
+ +L N+ L + ++ I + L LE L + N I
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLL-----LDIAFNHFSGTIPPPIF 238
G L +L + + R + +L L++ N S
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
+ LEV+ L N L L N+ ++ + N + S + L+ +
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 299 RNQFSG--RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNR- 355
R F L+NL+ L++ NN+ + +L KLE L N
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD------MLEGLEKLEILDLQHNNL 516
Query: 356 -------FEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408
G + + LS + + + N + L L + + N L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSH-LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 409 IPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440
+L+ LNL N + G
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-40
Identities = 70/356 (19%), Positives = 119/356 (33%), Gaps = 23/356 (6%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156
+ + +NL +N R L L + N+ S P + L L + N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID-SLVQ 215
L L L + N I +L+ D+ N L + VQ
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 216 LRNLLLLDIAFNHFSGTIPPPI--FNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273
L NL L ++ N + F SSL+ + LS N+ P + L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFL 202
Query: 274 NGNNFTGSIPVSLS---NASRLEMIEFSRNQFSGRVSVDFSRLK--NLSWLNMGINNLGT 328
N S+ L + + + S +Q S + F LK NL+ L++ NNL
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262
Query: 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS--------TIKQIAMGRNR 380
+ +LE + N + HS+ L + + + ++
Sbjct: 263 VGNDS------FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316
Query: 381 ISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436
+ + L L L ++ N + G L NL+ L+L +F ++
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 66/326 (20%), Positives = 106/326 (32%), Gaps = 23/326 (7%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T+ + S+ L L ++N+ +N G L+ L LSN+ S
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 137 TIPTNLS----RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS-IG 191
TN + S L L + N + A L LE L + N I +L
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 192 NLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSG--TIPPPIFNISSLEVISL 248
L ++ + N +S + +L L + + P P + +L ++ L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFT--------GSIPVSLSNASRLEMIEFSRN 300
S N + D L L L NN G L S L ++ N
Sbjct: 488 SNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 301 QFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL 360
F F L L +++G+NNL N L ++ N L+ L +N
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNL-----NTLPA-SVFNNQVSLKSLNLQKNLITSVE 600
Query: 361 PHSVANLSSTIKQIAMGRNRISGTIP 386
+ ++ M N T
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-21
Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 13/204 (6%)
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
S EV S + T +P D N+ L+ N + + S+L ++ N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361
S +L L LN+ N L + C+ L L+ N +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSD------KTFAFCTNLTELHLMSNSIQKIKN 114
Query: 362 HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN--L 419
+ + + + + N +S T +L +L L + N++ E+ N L
Sbjct: 115 NPFVKQKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 420 QLLNLGGNFLQGSIPSSLGNLTLL 443
+ L L N ++ P + L
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRL 197
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 9/155 (5%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANN--------GFLGEIPPQIGRQDMLEGLV 128
T LDL N +I + L L ++L +N G + L L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
L +N F L + + N L + L+ L + N IT
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 189 SIG-NLSSLLAFDVRENILWGRIDSLVQLRNLLLL 222
G +L D+R N +S+ N +
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-41
Identities = 73/385 (18%), Positives = 123/385 (31%), Gaps = 33/385 (8%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
LDL + S + L+ ++L+ L L+L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLS 194
S S+L +L L IG L L+ L + HN I +LP NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 195 SLLAFDVRENILWGRI-DSLVQLRNL----LLLDIAFNHFSGTIPPPIFNISSLEVISLS 249
+L D+ N + L L + L LD++ N + I P F L ++L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 250 ENRFTGSLPVDTGVNLPNLRQLS------PNGNNFTGSIPVSLSNASRLEMIEFSRNQ-- 301
N + ++ L L N N +L L + EF
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 302 -FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL 360
+ + F+ L N+S ++ + + + + L +F
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFP 320
Query: 361 PHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT--GTIPPEIGELKN 418
+ +L G L SL +L + RN L+ G +
Sbjct: 321 TLKLKSLKRLT------FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 419 LQLLNLGGNFLQGSIPSSLGNLTLL 443
L+ L+L N + + S+ L L
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQL 398
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 59/375 (15%), Positives = 112/375 (29%), Gaps = 26/375 (6%)
Query: 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-------QDMLEGLVLS 130
LDL + + P L + L NN + + ++ G +
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 131 NNSFSGTIPTNLSRCSNLIELFVDTNYL---VGEIPAAIGGLFKLERLFIFHNHITGQLP 187
+ + L NL YL + +I L + + I
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVIS 247
S ++ + L+ L + F G ++ SLE +
Sbjct: 300 FS--YNFGWQHLELVNC----KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353
Query: 248 LSENRFTGS-LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
LS N + + +L+ L + N + + +LE ++F +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 307 SVD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365
F L+NL +L++ + N + S LE L N F+ +
Sbjct: 413 EFSVFLSLRNLIYLDISHTHT-RVAFNGI-----FNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 366 NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLG 425
+ + + + ++ P L SL L + N L +LQ+L+
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526
Query: 426 GNFLQGSIPSSLGNL 440
N + S L +
Sbjct: 527 LNHIMTSKKQELQHF 541
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 8e-35
Identities = 71/379 (18%), Positives = 124/379 (32%), Gaps = 28/379 (7%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLV-- 128
+ R+ +L LRN + L+ L L F E + + LEGL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 129 -------LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181
+ + I + +N+ + + + F + L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNH--FSGTIPPPIFN 239
+ +L L + G S V L +L LD++ N F G F
Sbjct: 316 FGQFPTLKLKSLKRL----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFS 298
+SL+ + LS N + + L L L +N S + L ++ S
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
+ F+ L +L L M N+ E ++ T L L ++ + E
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSF-----QENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL-K 417
P + +LSS ++ + M N + L SL L N + + E+
Sbjct: 485 LSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 418 NLQLLNLGGNFLQGSIPSS 436
+L LNL N +
Sbjct: 544 SLAFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-33
Identities = 76/404 (18%), Positives = 138/404 (34%), Gaps = 47/404 (11%)
Query: 77 TRLDL-RNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGR----QDMLEGLVLSN 131
L++ N L Y NL+ L +++L++N + + L LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 132 NSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERL------FIFHNHITG 184
N + I + L +L + N+ + I GL LE F ++
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 185 QLPASIGNLSSLLAFDVRENILWGRIDSLV----QLRNLLLLDIAFNHFSGTIPPPIFNI 240
+++ L +L + R L +D ++ L N+ +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYN 303
Query: 241 SSLEVISLSENRFTGSLP------------------VDTGVNLPNLRQ--LSPNGNNFTG 280
+ + L +F + V+LP+L LS NG +F G
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340
S + L+ ++ S N +S +F L+ L L+ +NL ++ ++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVF 417
Query: 341 TNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLT 399
+ L L + LSS ++ + M N P+I +L +L +L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 400 IDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ + QL P L +LQ+LN+ N L L
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-29
Identities = 51/326 (15%), Positives = 101/326 (30%), Gaps = 20/326 (6%)
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
+F IP NL + L + N L + +L+ L + I
Sbjct: 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 189 SIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVIS 247
+ +LS L + N + + L +L L + + PI ++ +L+ ++
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 248 LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF----SRNQFS 303
++ N + NL NL L + N L ++ ++ S N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363
F + L L + N + + L ++ RL R EG L
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFD-SLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 VANLSSTIKQIAMGRNRIS------GTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417
+ + + + R++ I L +++ ++ + +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF 304
Query: 418 NLQLLNLGGNFLQGSIPSSLGNLTLL 443
Q L L L +L L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRL 330
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-29
Identities = 60/357 (16%), Positives = 122/357 (34%), Gaps = 47/357 (13%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
V+ L + +I +++ L N F G+ P + L+ S
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF-GQFPTLK----LKSLKRLTFTS 334
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYL--VGEIPAAIGGLFKLERLFIFHNHITGQLPASIG 191
G + +L L + N L G + G L+ L + N + + ++
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393
Query: 192 NLSSLLAFDVRENILWGRIDS--LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLS 249
L L D + + L + + LRNL+ LDI+ H +SSLEV+ ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 250 ENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309
N F + D L NL L + P + ++ S L+++ S N F
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----- 508
Query: 310 FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 369
+ L+ L ++ N + + S
Sbjct: 509 -------------------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 370 TIKQIAMGRNRISGTIPPE--IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
++ + + +N + T + ++ + L ++ ++ P + + + +L+L
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS---DKQGMPVLSL 597
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 1e-37
Identities = 63/376 (16%), Positives = 118/376 (31%), Gaps = 16/376 (4%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
L+ + + L L +++L Q L+ LVL+ N
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
T LS L LF + + LE L++ NHI+
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 196 LLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNH-FSGTIPPPIFNISSLEVISLSENRF 253
L D + N + + + L+ L + N I P F+ + + ++ +
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 254 TG-SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN--ASRLEMIEFSRNQFSGRVSVDF 310
+ +L + + P +E I ++ F S F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370
L L++ +L + L S L++L + N+FE S +N S
Sbjct: 275 HCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS- 326
Query: 371 IKQIAMGRNRISGTIPPE-IRKLVSLNWLTIDRNQLT--GTIPPEIGELKNLQLLNLGGN 427
+ +++ N + + L +L L + + + ++ L +LQ LNL N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 428 FLQGSIPSSLGNLTLL 443
+ L
Sbjct: 387 EPLSLKTEAFKECPQL 402
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-36
Identities = 70/404 (17%), Positives = 125/404 (30%), Gaps = 40/404 (9%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGF----------------------- 110
+ + L L + I P L+ ++ NN
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 111 --LGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCS--NLIELFVDTNYLVGEIPAAI 166
+ I P + + L I L + +L + PA
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 167 GGLFK--LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDI 224
GL + +E + + ++ + S L D+ L LV L L L +
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308
Query: 225 AFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS--I 282
+ N F N SL +S+ N L NL NLR+L + ++ S
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTN 342
+ L N S L+ + S N+ + F L L++ L D + N
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-----KVKDAQSPFQN 423
Query: 343 CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI---PPEIRKLVSLNWLT 399
L+ L + + + L + ++ + + N ++ L L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 400 IDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ L+ LK + ++L N L S +L +L +
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 7e-31
Identities = 54/319 (16%), Positives = 91/319 (28%), Gaps = 14/319 (4%)
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
N + IP L ++ L N L L L L + I
Sbjct: 19 CENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75
Query: 189 SIGNLSSLLAFDVRENILWGRID-SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVIS 247
+ + L + N L + +L + L L S P+ N +LE +
Sbjct: 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135
Query: 248 LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIE--FSRNQFSGR 305
L N + S+ + G L+ L N +S+ + + + N +G
Sbjct: 136 LGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG- 193
Query: 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365
+ LN G L + L F E P
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI----QSLWLGTFEDMDDEDISPAVFE 249
Query: 366 NLS-STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
L +++ I + ++ L L + L+ +P + L L+ L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308
Query: 425 GGNFLQGSIPSSLGNLTLL 443
N + S N L
Sbjct: 309 SANKFENLCQISASNFPSL 327
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 60/362 (16%), Positives = 112/362 (30%), Gaps = 18/362 (4%)
Query: 56 NNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSF--LRYINLANNGFLGE 113
+ NL + Q + + L + INL + F
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269
Query: 114 IPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173
L+ L L+ S +P+ L S L +L + N + L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 174 RLFIFHNHITGQL-PASIGNLSSLLAFDVRENILWG---RIDSLVQLRNLLLLDIAFNHF 229
L I N +L + NL +L D+ + + L L +L L++++N
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 230 SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289
LE++ L+ R NL L+ L+ + + S
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448
Query: 290 SRLEMIEFSRNQFSGRVSVD---FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346
L+ + N F L L L + +L + + T+ +
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ------HAFTSLKMM 502
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406
+ + NR ++++L + + N IS +P + L + + +N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Query: 407 GT 408
T
Sbjct: 561 CT 562
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-34
Identities = 76/401 (18%), Positives = 136/401 (33%), Gaps = 38/401 (9%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+DL + S N S L++++L+ L L+L+ N
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLS 194
P + S ++L L L IG L L++L + HN I +LPA NL+
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 195 SLLAFDVRENILWG-RIDSLVQLRNL----LLLDIAFNHFSGTIPPPIFNISSLEVISLS 249
+L+ D+ N + ++ L LR L LD++ N I F L ++L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLR 212
Query: 250 ENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNAS--------RLEMIEFSRNQ 301
N + ++ NL L F + + S ++ +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNLGT----GTANELDFINLLTN---------CSKLER 348
V F L N+S +++ ++ + ++++ L+
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP--PEIRKLVSLNWLTIDRNQLT 406
L N+ G + L S + + + RN +S + SL L + N
Sbjct: 333 LTLTMNK--GSISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 407 GTIPPEIGELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
+ L+ LQ L+ + L+ SL L L
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-30
Identities = 54/377 (14%), Positives = 111/377 (29%), Gaps = 25/377 (6%)
Query: 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-------QDMLEGLVLS 130
LD+ I + L + L N I + ++ G
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 131 NNSFSGTIPTNLSRCSNLIELFVDTNY--LVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
+ P+ + ++ Y + L + + + I
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LE 301
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISL 248
+ + + L + + L L L + N G+I + SL + L
Sbjct: 302 DVPKHFKWQSLSIIRCQL--KQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDL 357
Query: 249 SENRFTGSLP-VDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
S N + S + + +LR L + N + + L+ ++F +
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416
Query: 308 VD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN 366
F L+ L +L++ N DF + + L L N F+ +V
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKI------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 367 LSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGG 426
++ + + + + ++ L L L + N L +L +L L+
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 427 NFLQGSIPSSLGNLTLL 443
N ++ S L
Sbjct: 531 NRIETSKGILQHFPKSL 547
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 67/363 (18%), Positives = 122/363 (33%), Gaps = 26/363 (7%)
Query: 77 TRLDLR-NQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLV------- 128
L LR N + + + NL+ L L F E +I ++EGL
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 129 -LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
L+ + +N+ + + + + + FK + L I +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPT 324
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNI--SSLEV 245
+ L SL + N V L +L LD++ N S + ++ +SL
Sbjct: 325 LDLPFLKSL---TLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSRNQFSG 304
+ LS N + + L L+ L + S + +L ++ S
Sbjct: 381 LDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 305 RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
F L +L+ L M N+ T + N+ N + L L ++ + E
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLS-----NVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
L ++ + M N + +L SL+ L N++ + K+L NL
Sbjct: 494 DTLHR-LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 425 GGN 427
N
Sbjct: 553 TNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 48/340 (14%), Positives = 102/340 (30%), Gaps = 16/340 (4%)
Query: 112 GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFK 171
G + P I + + S +P ++ S+ + + N L + +
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFS 230
L+ L + I + L L + N + S L +L L +
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 231 GTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290
PI + +L+ ++++ N NL NL + + N L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 291 RLEM----IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL--LTNCS 344
++ S N + + L L + N + + NL L
Sbjct: 178 ENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFN-SSNIMKTCLQNLAGLHVHR 235
Query: 345 KLERLYFNRNRFEGELPHSVANLSS-TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403
+ + + E P + L TI + + + L +++ +++
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 404 QLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ ++ + Q L++ L+ L L L
Sbjct: 296 SIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 55/312 (17%), Positives = 97/312 (31%), Gaps = 19/312 (6%)
Query: 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134
+ L + L+ + ++LA + + + + L +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL- 193
+L L L + N I L L L + N ++ S +L
Sbjct: 320 KQFPTLDL---PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 194 -SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSEN 251
+SL D+ N + + L L LD + F ++ L + +S
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSRNQFSGRVSVDF 310
+ L +L L GN+F + + +N + L ++ S+ Q F
Sbjct: 435 NTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370
L L LNM NNL LD + L L + NR E S
Sbjct: 494 DTLHRLQLLNMSHNNL-----LFLDS-SHYNQLYSLSTLDCSFNRIETSKGILQHFPKS- 546
Query: 371 IKQIAMGRNRIS 382
+ + N ++
Sbjct: 547 LAFFNLTNNSVA 558
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-34
Identities = 81/368 (22%), Positives = 145/368 (39%), Gaps = 33/368 (8%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
L I +L+ L + + + LV++
Sbjct: 3 ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-- 56
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
+ +NL L ++ N + P + L KL L+I N IT +++ NL++L
Sbjct: 57 ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNL 112
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
+ E+ + I L L + L++ NH + P+ N++ L ++++E++
Sbjct: 113 RELYLNEDNISD-ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ NL +L LS N N P L++ + L NQ + + + L
Sbjct: 171 TPIA---NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRL 223
Query: 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376
+ L +G N + ++ L N S+L L N+ ++V +L+ +K + +
Sbjct: 224 NSLKIGNNKITD--------LSPLANLSQLTWLEIGTNQISD--INAVKDLTK-LKMLNV 272
Query: 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP-S 435
G N+IS + L LN L ++ NQL IG L NL L L N + P +
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330
Query: 436 SLGNLTLL 443
SL +
Sbjct: 331 SLSKMDSA 338
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 9e-34
Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 32/357 (8%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
R L+ S+ T L + + +A + I I LE L L+ N
Sbjct: 22 AEGIRAVLQKASV--TDVVTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQ 77
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
+ P LS L L++ TN + +A+ L L L++ ++I+ + + NL
Sbjct: 78 ITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANL 131
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
+ + + ++ N + L + L L + + PI N++ L +SL+ N+
Sbjct: 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI 189
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
P+ +L +L + N T P ++N +RL ++ N+ + + L
Sbjct: 190 EDISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANL 242
Query: 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQ 373
L+WL +G N + IN + + +KL+ L N+ + NLS +
Sbjct: 243 SQLTWLEIGTNQISD--------INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQ-LNS 291
Query: 374 IAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430
+ + N++ I L +L L + +N +T P + L + + ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 90/369 (24%), Positives = 155/369 (42%), Gaps = 37/369 (10%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
VT L I ++ V L+ L IN +NN L +I P + L ++++NN +
Sbjct: 48 VTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIA 103
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
P L+ +NL L + N + P + L L RL + N I+ +++ L+S
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTS 157
Query: 196 LLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255
L + + L L L LDI+ N S + +++LE + + N+ +
Sbjct: 158 LQQLSFGNQVT--DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD 213
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315
P+ L NL +LS NGN +L++ + L ++ + NQ S S L
Sbjct: 214 ITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTK 266
Query: 316 LSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIA 375
L+ L +G N + I+ L + L L N N+ E ++NL + + +
Sbjct: 267 LTELKLGANQISN--------ISPLAGLTALTNLELNENQLED--ISPISNLKN-LTYLT 315
Query: 376 MGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP- 434
+ N IS P + L L L N+++ + L N+ L+ G N + P
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 371
Query: 435 SSLGNLTLL 443
++L +T L
Sbjct: 372 ANLTRITQL 380
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 79/354 (22%), Positives = 131/354 (37%), Gaps = 34/354 (9%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T L L N I T + NL+ L + L++N + +I + L+ L N
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQV--- 167
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
T L+ + L L + +N + + + L LE L +N I+ P +G L++L
Sbjct: 168 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNL 223
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
+ N L I +L L NL LD+A N S P+ ++ L + L N+ +
Sbjct: 224 DELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI 280
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ L L L N N P +SN L + N S S L L
Sbjct: 281 SPLA---GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKL 333
Query: 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376
L N++ ++ L N + + L N+ P +ANL+ I Q+ +
Sbjct: 334 QRLFFY--------NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGL 382
Query: 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430
+ P + VS+ + P I + + ++ N
Sbjct: 383 NDQAWT-NAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 39/335 (11%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
VL + + T+ + + L D + + + L L ++ +N +T
Sbjct: 26 KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
P + NL+ L+ + N + I L L NL L + N + P+ N+++L
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNL 136
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
+ LS N + + L +L+QLS GN T P L+N + LE ++ S N+ S
Sbjct: 137 NRLELSSNTISD---ISALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVS 190
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGTGTA--------------NELDFINLLTNCSKLERL 349
++L NL L N + T N+L I L + + L L
Sbjct: 191 DISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
Query: 350 YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTI 409
N+ P ++ L+ + ++ +G N+IS P + L +L L ++ NQL
Sbjct: 249 DLANNQISNLAP--LSGLTK-LTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Query: 410 PPEIGELKNLQLLNLGGNFLQGSIP-SSLGNLTLL 443
P I LKNL L L N + P SSL L L
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 33/318 (10%)
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQL 186
+ + + + + ++ + + + L ++ L I
Sbjct: 7 TITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-- 60
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246
+ L++L + N L I L L L+ + + N + P+ N+++L +
Sbjct: 61 IDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGL 117
Query: 247 SLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
+L N+ T P+ NL NL +L + N + +LS + L+ + F
Sbjct: 118 TLFNNQITDIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD--- 169
Query: 307 SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN 366
+ L L L++ N + I++L + LE L N+ P +
Sbjct: 170 LKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITP--LGI 219
Query: 367 LSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGG 426
L++ + ++++ N++ + L +L L + NQ++ P + L L L LG
Sbjct: 220 LTN-LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 427 NFLQGSIP-SSLGNLTLL 443
N + P + L LT L
Sbjct: 275 NQISNISPLAGLTALTNL 292
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 30/183 (16%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T L+L + + NL L Y+ L N P + L+ L NN S
Sbjct: 290 TNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITG------------ 184
++L+ +N+ L N + P + L ++ +L + T
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 185 ----------QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234
PA+I + S D+ N+ + + + FSGT+
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
Query: 235 PPI 237
P+
Sbjct: 462 QPL 464
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-28
Identities = 74/421 (17%), Positives = 126/421 (29%), Gaps = 56/421 (13%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
LDL + S + L+ ++L+ L L+L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT-GQLPASIGNLS 194
S S+L +L L IG L L+ L + HN I +LP NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 195 SLLAFDVRENILW----GRIDSLVQLRNLLL-LDIAFNHFSGTIPPPIFNISSLEVISLS 249
+L D+ N + + L Q+ L L LD++ N + I P F L ++L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLR 208
Query: 250 ENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS---------------------------- 281
N + ++ L L F
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 282 -----IPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSWLNMGINNLGTGTANELD 335
I + + + + ++L +N T L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 336 FINLLTN----------CSKLERLYFNRNR--FEGELPHSVANLSSTIKQIAMGRNRISG 383
+ +N LE L +RN F+G S +S +K + + N +
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVI- 386
Query: 384 TIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIPSSLGNLTL 442
T+ L L L + L + L+NL L++ + + L+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 443 L 443
L
Sbjct: 447 L 447
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-21
Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 34/387 (8%)
Query: 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRY----INLANNGFLGEIPPQIGRQDMLEGLVLS 130
+ LDL + I + L + ++L+ N + I P ++ L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLR 208
Query: 131 NNSFSGTIP-------TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
NN S + L ++ F + L +A+ GL L ++
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 184 G---QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNI 240
+ L+++ +F + + R+ L++ F P +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ---FPTLKL 324
Query: 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQL--SPNGNNFTGSIPVSLSNASRLEMIEFS 298
SL+ ++ + N+ + + V+LP+L L S NG +F G S + L+ ++ S
Sbjct: 325 KSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
N +S +F L+ L L+ +NL ++ ++ + L L +
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI-GEL 416
LSS ++ + M N P+I +L +L +L + + QL + P L
Sbjct: 436 AFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL 493
Query: 417 KNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+LQ+LN+ N L+ LT L
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSL 520
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 62/365 (16%), Positives = 118/365 (32%), Gaps = 32/365 (8%)
Query: 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-------QDMLEGLVLS 130
LDL + + P L + L NN + + ++ G +
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 131 NNSFSGTIPTNLSRCSNLIELFVDTNYL---VGEIPAAIGGLFKLERLFIFHNHITGQLP 187
+ + L NL YL + +I L + + I
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 188 ASI-GNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246
S L + + ++L++L L N ++ SLE +
Sbjct: 300 FSYNFGWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFL 352
Query: 247 SLSENRFTG-SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
LS N + + +L+ L + N ++ + +LE ++F +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 306 VSVD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
F L+NL +L++ + + F + S LE L N F+ +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHT------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLL 422
+ + + + ++ + P L SL L + NQL ++P I L +LQ +
Sbjct: 466 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523
Query: 423 NLGGN 427
L N
Sbjct: 524 WLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 52/328 (15%), Positives = 108/328 (32%), Gaps = 21/328 (6%)
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
+F IP NL + L + N L + +L+ L + I
Sbjct: 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 189 SIGNLSSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVIS 247
+ +LS L + N + + + L +L L + + PI ++ +L+ ++
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 248 LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM----IEFSRNQFS 303
++ N + NL NL L + N L ++ + ++ S N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363
+ + L L + NN + + L ++ RL R EG L
Sbjct: 191 -FIQPGAFKEIRLHKLTLR-NNFDSLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 VANLSSTIKQIAMGRNRISG------TIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE-- 415
+ + + + R++ I L +++ ++ + +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG 305
Query: 416 LKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++L+L+N SL LT
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFT 333
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 69/352 (19%), Positives = 124/352 (35%), Gaps = 27/352 (7%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLV-- 128
+ R+ +L LRN + L+ L L F E + + LEGL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 129 ------LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
L+ + +L C + F + + + F + L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKF 316
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN--HFSGTIPPPIFNI 240
+ +L L N G S V L +L LD++ N F G F
Sbjct: 317 GQFPTLKLKSLKRL---TFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSR 299
+SL+ + LS N ++ + + L L L +N S + L ++ S
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
+ F+ L +L L M N+ ++ T L L ++ + E
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQL 485
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIP 410
P + +LSS ++ + M N++ ++P I +L SL + + N + P
Sbjct: 486 SPTAFNSLSS-LQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 51/352 (14%), Positives = 99/352 (28%), Gaps = 50/352 (14%)
Query: 88 GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSN 147
G+ + + S + + L + + + + +N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 148 LIELFVDTNYLVGEIPAAIGGL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
L + L + + Q P LS L +
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 206 LWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG--- 262
L D++ Q L L +A N +P I +++ L +S+ LP
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 263 -----VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
L NL+ L S+P S++N L+ ++ + S + L L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232
Query: 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377
L+ L C+ L P + + I
Sbjct: 233 ELD-------------------LRGCTALR-----------NYPPIFGGRAPLKRLILKD 262
Query: 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429
+ + T+P +I +L L L + +P I +L ++ + +
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
L +RN + L P + +L L ++L L PP G + L+ L+L + S
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
T+P ++ R + L +L + + +P+ I L + + +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 78/320 (24%), Positives = 127/320 (39%), Gaps = 51/320 (15%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L + + + T+P L +++ L + N L +PA +L L + N +T
Sbjct: 42 NAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
LP L L F + +L L L I N + ++P L
Sbjct: 95 -SLPVLPPGLLELSIFSNPLT----HLPAL--PSGLCKLWIFGNQLT-SLPV---LPPGL 143
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
+ +S+S+N+ SLP L +L N T S+P+ S L+ + S NQ +
Sbjct: 144 QELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA 194
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363
+ S L L N N L +L S L+ L + NR LP
Sbjct: 195 -SLPTLPSELYKLWAYN---NRL----------TSLPALPSGLKELIVSGNRLT-SLPVL 239
Query: 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLN 423
+ L K++ + NR++ ++P L+SL+ + RNQLT +P + L + +N
Sbjct: 240 PSEL----KELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVN 290
Query: 424 LGGNFLQGSIPSSLGNLTLL 443
L GN L +L +T
Sbjct: 291 LEGNPLSERTLQALREITSA 310
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-24
Identities = 69/345 (20%), Positives = 127/345 (36%), Gaps = 53/345 (15%)
Query: 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLV 159
+N+ +G L +P + + LV+ +N+ + ++P L L V N L
Sbjct: 42 NAVLNVGESG-LTTLPDCLPAH--ITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94
Query: 160 GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL-VQLRN 218
+P GL +L LPA L L + N ++ SL V
Sbjct: 95 -SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKL---WIFGN----QLTSLPVLPPG 142
Query: 219 LLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
L L ++ N + ++P + L N+ T SLP+ L++LS + N
Sbjct: 143 LQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPM----LPSGLQELSVSDNQL 193
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFIN 338
S+P S L + N+ + S+ + L L + N L +
Sbjct: 194 A-SLPTLPSE---LYKLWAYNNRLT---SLP-ALPSGLKELIVSGNRLTS---------- 235
Query: 339 LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398
L S+L+ L + NR LP + L +++ RN+++ +P + L S +
Sbjct: 236 LPVLPSELKELMVSGNRLT-SLPMLPSGL----LSLSVYRNQLT-RLPESLIHLSSETTV 289
Query: 399 TIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++ N L+ + E+ + + + S+ L
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 5e-16
Identities = 56/251 (22%), Positives = 89/251 (35%), Gaps = 31/251 (12%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156
S L + + N L +P L+ L +S+N + ++P S L +L+ N
Sbjct: 120 PSGLCKLWIFGNQ-LTSLPVLPPG---LQELSVSDNQLA-SLPALPS---ELCKLWAYNN 171
Query: 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL-VQ 215
L +P GL + L + N + LP L L N R+ SL
Sbjct: 172 QLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKL---WAYNN----RLTSLPAL 219
Query: 216 LRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
L L ++ N + ++P S L+ + +S NR T SLP+ L LS
Sbjct: 220 PSGLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYR 270
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335
N T +P SL + S + N S R + + + I A+
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329
Query: 336 FINLLTNCSKL 346
L +
Sbjct: 330 ETRALHLAAAD 340
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 73/336 (21%), Positives = 128/336 (38%), Gaps = 22/336 (6%)
Query: 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVG 160
R + +P I + L L N + +L EL ++ N +
Sbjct: 14 RAVLCHRKR-FVAVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 161 EIPAAIGGLFKLERLFIFHNHITGQLPASI-GNLSSLLAFDVRENILWGRI--DSLVQLR 217
P A LF L L + N + +P + LS+L D+ EN + + L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLY 128
Query: 218 NLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
NL L++ N I F ++SLE ++L + T S+P + +L L L
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
N S RL+++E S + ++ + NL+ L++ NL + +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-----TAVPY 241
Query: 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSL 395
+ + L L + N + L +++I + +++ + P R L L
Sbjct: 242 -LAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLA-VVEPYAFRGLNYL 298
Query: 396 NWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQ 430
L + NQLT T+ + + NL+ L L N L
Sbjct: 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 12/283 (4%)
Query: 77 TRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSF 134
L+L + + P NL LR + L +N L IP + L L +S N
Sbjct: 59 EELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLS 194
+ NL L V N LV A GL LE+L + ++T ++ +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 195 SLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
L+ +R + R S +L L +L+I+ + T+ P +L +S++
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
T ++P +L LR L+ + N + L RL+ I+ Q + F L
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRF 356
L LN+ N L T ++ + LE L + N
Sbjct: 296 NYLRVLNVSGNQLTTLEE------SVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 52/235 (22%), Positives = 84/235 (35%), Gaps = 12/235 (5%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
D +L L++ N S + P F N+ +L + L NR +P+ L NL
Sbjct: 50 DEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
+L + N + + L+ +E N FS L +L L + NL +
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI 389
L++ L L +S L +K + + T+ P
Sbjct: 168 PTE------ALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNC 220
Query: 390 RKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++L L+I LT +P + L L+ LNL N + S L L L
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 73/405 (18%), Positives = 125/405 (30%), Gaps = 72/405 (17%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFL-------------RYINLANNGFLGEIPPQIGR 120
+ T P G + + L N G L +P
Sbjct: 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPH 92
Query: 121 QDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA---------------A 165
LE LV S NS + +P +L+ + L P
Sbjct: 93 ---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148
Query: 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIA 225
+ L+ + + +N + +LP +L + N L + L L L +
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQL-EELPELQNLPFLTAIYAD 203
Query: 226 FNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS 285
N +P SLE I N LP NLP L + + N ++P
Sbjct: 204 NNSLK-KLPD---LPLSLESIVAGNNILE-ELPELQ--NLPFLTTIYADNNLLK-TLPDL 255
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN-------NLGTGTANELDFIN 338
+ LE + N + + L L + NL A+ + +
Sbjct: 256 PPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311
Query: 339 LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398
L LE L + N+ ELP L +++ N ++ +P + L L+
Sbjct: 312 LCDLPPSLEELNVSNNKLI-ELPALPPRL----ERLIASFNHLA-EVPELPQNLKQLH-- 363
Query: 399 TIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++ N L P +++L++ + +P NL L
Sbjct: 364 -VEYNPLR-EFPDIPESVEDLRMNS-----HLAEVPELPQNLKQL 401
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 71/369 (19%), Positives = 119/369 (32%), Gaps = 65/369 (17%)
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
+ N+ A + + PP G Q + L +
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQA 73
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
EL ++ L +P LE L N +T +LP +L SLL + L
Sbjct: 74 HELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 128
Query: 209 RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268
L L ++ N P + N S L++I + N LP P+L
Sbjct: 129 LPPLLEY------LGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLP----DLPPSL 175
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
++ N +P L N L I N +L + G
Sbjct: 176 EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL----KKLPDLPLSLESIVAG------ 223
Query: 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE 388
N L+ + L N L +Y + N + LP +L + + + N ++ +P
Sbjct: 224 --NNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSL----EALNVRDNYLT-DLPEL 275
Query: 389 IRKLVSLNWLTIDRNQLTGTIPPEIGEL--------------KNLQLLNLGGNFLQGSIP 434
+ L L+ + L+ +PP + L +L+ LN+ N L +P
Sbjct: 276 PQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 333
Query: 435 SSLGNLTLL 443
+ L L
Sbjct: 334 ALPPRLERL 342
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 61/315 (19%), Positives = 110/315 (34%), Gaps = 47/315 (14%)
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P N+S L E ++ L E+P + + + P G +
Sbjct: 5 PRNVSNT-FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 199 FDVRENILWG---------RIDSL-VQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISL 248
+R+ + + SL +L L + N + +P ++ SL V +
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
+ + P L L + N +P L N+S L++I+ N
Sbjct: 122 NLKALSD--------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL--- 168
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368
+L ++ G N+L+ + L N L +Y + N + +LP +L
Sbjct: 169 -PDLPPSLEFIAAG--------NNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSL- 217
Query: 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428
+ I G N + PE++ L L + D N L T+P L+ L + +
Sbjct: 218 ---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT- 270
Query: 429 LQGSIPSSLGNLTLL 443
+P +LT L
Sbjct: 271 ---DLPELPQSLTFL 282
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 71/411 (17%), Positives = 123/411 (29%), Gaps = 76/411 (18%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN 131
++ L+L N + +L +L + + N L E+P L +
Sbjct: 69 LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNS-LTELPELPQSLKSLLVDNNNL 123
Query: 132 NSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIG 191
+ S P L L V N L ++P + L+ + + +N + +LP
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251
+L + N L + L L L + N +P SLE I N
Sbjct: 174 SLEFI---AAGNNQL-EELPELQNLPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNN 225
Query: 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
LP NLP L + + N ++P + LE + N + +
Sbjct: 226 ILE-ELPELQ--NLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQ 277
Query: 312 RLKNLSWLNMGIN-------NLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
L L + NL A+ + +L LE L + N+ ELP
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 336
Query: 365 ANLS----------------STIKQIAMGRNRISGTIPPEIRKLVSLN------------ 396
L +KQ+ + N + P + L
Sbjct: 337 PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELP 395
Query: 397 ----WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L ++ N L P +++L + + + L
Sbjct: 396 QNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKL 442
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 59/330 (17%), Positives = 105/330 (31%), Gaps = 52/330 (15%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
+ N + P + NL FL I NN L ++P LE +V NN
Sbjct: 176 EFIAAGNNQL--EELPELQNLPFLTAIYADNN-SLKKLPDLPLS---LESIVAGNNIL-- 227
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
L L ++ D N L +P LE L + N++T LP +L+ L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFL 282
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
+ + L +L L + + N ++ SLE +++S N+
Sbjct: 283 DVSENIFSGLSELPPNLYYL------NASSNEIR-SLCD---LPPSLEELNVSNNKLI-E 331
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
LP P L +L + N+ +P N L+ + N +++L
Sbjct: 332 LPA----LPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 382
Query: 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376
+ + L++L+ N E P ++ + + M
Sbjct: 383 RMNSH--------------LAEVPELPQNLKQLHVETNPLR-EFPDIPESV----EDLRM 423
Query: 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406
R+ L + +
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 71/369 (19%), Positives = 121/369 (32%), Gaps = 70/369 (18%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
L + N + P + N SFL+ I++ NN L ++P LE + NN
Sbjct: 134 EYLGVSNNQL--EKLPELQNSSFLKIIDVDNN-SLKKLPDLPPS---LEFIAAGNNQL-- 185
Query: 137 TIPTNLSRCSNLIELFVDTNYLVG------------------EIPAAIGGLFKLERLFIF 178
L L ++ D N L E + L L ++
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
+N + LP +L +L +VR+N L + L L + + F+ S P
Sbjct: 246 NNLLK-TLPDLPPSLEAL---NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP---- 297
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
+L ++ S N SL P+L +L+ + N +P LE + S
Sbjct: 298 ---NLYYLNASSNEIR-SLCD----LPPSLEELNVSNNKLI-ELPALPPR---LERLIAS 345
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
N + V +NL L++ N L +E L N +
Sbjct: 346 FNHLA---EVP-ELPQNLKQLHVEYNPL----------REFPDIPESVEDLRMNSHL--A 389
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418
E+P NL KQ+ + N + P + L ++ ++
Sbjct: 390 EVPELPQNL----KQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDK 441
Query: 419 LQLLNLGGN 427
L+ +
Sbjct: 442 LEDDVFEHH 450
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 63/370 (17%), Positives = 116/370 (31%), Gaps = 39/370 (10%)
Query: 104 NLANNGFLG--EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGE 161
+A F ++P + E L+LS N ++ L L + + Y
Sbjct: 7 RIAFYRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 162 I-PAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQLR 217
I A L L L + + I P + L L + L + L+
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 218 NLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVD-TGVNLPNLRQLSPNG 275
L LD++ N P F ++SL+ I S N+ + + L S
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 276 NNFTGSIPVSLSNAS------RLEMIEFSRNQFSGRVSVDFSR------------LKNLS 317
N+ + V LE+++ S N ++ ++ +FS ++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377
G +N+ N + + + L + L +K + +
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSS----VRHLDLSHGFVFSLNSRVFETLKD-LKVLNLA 298
Query: 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGN---FLQGSI 433
N+I+ L +L L + N L + L + ++L N +Q
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 434 PSSLGNLTLL 443
L L L
Sbjct: 358 FKFLEKLQTL 367
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 2e-21
Identities = 73/381 (19%), Positives = 123/381 (32%), Gaps = 40/381 (10%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSF 134
RL L I + L L+ + L + I + L L L ++
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEI--PAAIGGLFKLERLFIFHNHITG-QLPASIG 191
P +L EL + L + L L RL + N I L S G
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145
Query: 192 NLSSLLAFDVRENILWG-RIDSLVQLR--NLLLLDIAFNHFSGTIPPPIFNIS------S 242
L+SL + D N ++ L L+ L +A N +
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205
Query: 243 LEVISLSENRFT-----------GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN--A 289
LE++ +S N +T + + ++ +N + +
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265
Query: 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERL 349
S + ++ S S F LK+L LN+ N + N++ L+ L
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-----NKIA-DEAFYGLDNLQVL 319
Query: 350 YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGT 408
+ N EL S + I + +N I+ I + + L L L + N LT
Sbjct: 320 NLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-- 375
Query: 409 IPPEIGELKNLQLLNLGGNFL 429
I + ++ + L GN L
Sbjct: 376 ---TIHFIPSIPDIFLSGNKL 393
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 79/417 (18%), Positives = 146/417 (35%), Gaps = 55/417 (13%)
Query: 74 QRVTRLDLRNQSIGG-TLSPYVGNLSFLRYINLANNGFLGEIPPQI---GRQDMLEGLVL 129
+ +TRLDL I L P G L+ L+ I+ ++N + + + L L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSL 181
Query: 130 SNNSFSGTIPTNLSRCSN------LIELFVDTNYLVGEIPAA------------IGGLFK 171
+ NS + + +C N L L V N +I +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241
Query: 172 LERLFIFHNHITGQLPASIGNL--SSLLAFDVREN-ILWGRIDSLVQLRNLLLLDIAFNH 228
+ ++I + L SS+ D+ + L++L +L++A+N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 229 FSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
+ I F + +L+V++LS N L LP + + N+ +
Sbjct: 302 IN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDFIN---- 338
+L+ ++ N + + ++ + + N L TAN +
Sbjct: 360 FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414
Query: 339 ------LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI--- 389
L L+ L N+NRF + + +++Q+ +G N + E+
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 390 --RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSL-GNLTLL 443
L L L ++ N L P L L+ L+L N L + L NL +L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL 531
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 66/393 (16%), Positives = 135/393 (34%), Gaps = 47/393 (11%)
Query: 74 QRVTRLDLRNQSIGGTLSP--YVGNLSFLRYINLANNGFLG-EIPPQIGRQDMLEGLVLS 130
+ L L + + Y NL L ++L+ N + P G+ + L+ + S
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 131 NNSFSGTIPTNLS--RCSNLIELFVDTNYLVGEIPAAIGGLFK------LERLFIFHNHI 182
+N L + L + N L + G LE L + N
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF---N 239
T + + N S + SL+ +++ F++ F
Sbjct: 217 TVDITGNFSNAISKS-----------QAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLA 264
Query: 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
SS+ + LS SL L +L+ L+ N + L+++ S
Sbjct: 265 RSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTAN---------ELDF----INLLTNCSKL 346
N S +F L ++++++ N++ LD + + +
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG-TIPPEIRKLVSLNWLTIDRNQL 405
++ + N+ ++ ++ T I + NR+ I + ++ L L +++N+
Sbjct: 384 PDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIPSSL 437
+ + E +L+ L LG N LQ + + L
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-20
Identities = 56/356 (15%), Positives = 125/356 (35%), Gaps = 27/356 (7%)
Query: 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLS--RCSNLIELF 152
GN + +N + + G ++ + S++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG-RID 211
+ ++ L L+ L + +N I + L +L ++ N+L
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 212 SLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270
+ L + +D+ NH + I F + L+ + L +N T ++ +P++
Sbjct: 333 NFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPD 385
Query: 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLGTG 329
+ +GN ++L+ +I S N+ + R+ +L L + N
Sbjct: 386 IFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF--- 438
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS----STIKQIAMGRNRISGTI 385
+ + LE+L+ N + + S ++ + + N ++
Sbjct: 439 --SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLT 441
P L +L L+++ N+LT + NL++L++ N L P +L+
Sbjct: 497 PGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPDVFVSLS 550
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 65/340 (19%), Positives = 113/340 (33%), Gaps = 34/340 (10%)
Query: 56 NNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNL--SFLRYINLANNGFLGE 113
N N + + +I L S +R+++L++
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281
Query: 114 IPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173
L+ L L+ N + NL L + N L + GL K+
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341
Query: 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLL------------ 221
+ + NHI + L L D+R+N L I + + ++ L
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 222 -----LDIAFNHFSG-TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
+ ++ N I + + L+++ L++NRF+ T P+L QL
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 276 NNFTGSIPVSL-----SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT 330
N + L S L+++ + N + FS L L L++ N L
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL---- 516
Query: 331 ANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370
L +L N LE L +RN+ P +LS
Sbjct: 517 -TVLSHNDLPAN---LEILDISRNQLLAPNPDVFVSLSVL 552
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 47/284 (16%), Positives = 107/284 (37%), Gaps = 23/284 (8%)
Query: 162 IPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG-RIDSLVQLRNLL 220
I + + + + + L + + ++ D+ N L L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 221 LLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280
LL+++ N + ++S+L + L+ N L P++ L NN +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR 113
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340
VS S + I + N+ + +D + +L++ +N + + ++F L
Sbjct: 114 ---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELA 165
Query: 341 TNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTI 400
+ LE L N ++ + +K + + N+++ + PE + + W+++
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQ-VVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221
Query: 401 DRNQLTGTIPPEIGELKNLQLLNLGGNFLQ-GSIPSSLGNLTLL 443
N+L I + +NL+ +L GN G++ +
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 45/307 (14%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
+ ++++S + + N+ EL + N L A + KLE L + N +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
+ +LS+L D+ N + L+ ++ L A N+ S +
Sbjct: 72 E--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSRG--QGK 122
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
+ I L+ N+ T L ++ L N + +
Sbjct: 123 KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID----------------TVNFAEL- 164
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363
+ L LN+ N + + +KL+ L + N+ +
Sbjct: 165 ------AASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLA-FMGPE 209
Query: 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLN 423
+ + + I++ N++ I +R +L + N KN ++
Sbjct: 210 FQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQT 266
Query: 424 LGGNFLQ 430
+ ++
Sbjct: 267 VAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 24/291 (8%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
R + + S+ L+ + ++ ++L+ N + LE L LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
+L S L L ++ NY+ + +E L +N+I+ ++ S
Sbjct: 70 LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--G 119
Query: 194 SSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIF--NISSLEVISLSE 250
+ N + R + LD+ N T+ + +LE ++L
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQY 178
Query: 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF 310
N V V L+ L + N + +A+ + I N+ +
Sbjct: 179 NFIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233
Query: 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361
+NL ++ N GT + + +++ + +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTGQN 279
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 57/326 (17%), Positives = 114/326 (34%), Gaps = 34/326 (10%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
+ + N++ L + L ++ + A +++L++ N I
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSL-----VQLRNLLLLDIAFNHFSGTIPPPIF 238
P N+ L + N + SL L L ++ N+ I F
Sbjct: 107 YLPPHVFQNVPLLTVLVLERN----DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161
Query: 239 -NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297
+SL+ + LS NR T + + +P+L + + N + +L+ +E ++
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212
Query: 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357
S N + V L+ L + NNL L N L + + N E
Sbjct: 213 SHNSIN---VVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELE 261
Query: 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417
+ H + ++++ + NR+ + + + +L L + N L + +
Sbjct: 262 KIMYHPFVKMQR-LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318
Query: 418 NLQLLNLGGNFLQGSIPSSLGNLTLL 443
L+ L L N + S+ L L
Sbjct: 319 RLENLYLDHNSIVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 56/356 (15%), Positives = 124/356 (34%), Gaps = 33/356 (9%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSFSGT 137
+ + Q+ L+ + + N+ + ++P + +E L L++
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEI 84
Query: 138 IPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASI-GNLSSL 196
+ + +L++ N + P + L L + N ++ LP I N L
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143
Query: 197 LAFDVRENILWGRIDSLV--QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254
+ N L RI+ +L L ++ N + + + SL ++S N +
Sbjct: 144 TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS 199
Query: 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
+L + +L + N+ + ++ L +++ N +
Sbjct: 200 -TLA-----IPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDTAW--LLNYP 248
Query: 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374
L +++ N L ++ + + +LERLY + NR L + + +K +
Sbjct: 249 GLVEVDLSYNEL-----EKIMY-HPFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVL 300
Query: 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430
+ N + + + L L +D N + T+ L+ L L N
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 53/315 (16%), Positives = 99/315 (31%), Gaps = 48/315 (15%)
Query: 131 NNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASI 190
I +NL ++ +D L + + ++ + A +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 191 GNLSSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISL 248
+ + ++ + + + + L + FN +PP +F N+ L V+ L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
N + SLP N P L LS + NN + + L+ ++ S N+ + V
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HV 180
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368
D S + +L N+ N L T L +E L + N
Sbjct: 181 DLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSIN----------- 218
Query: 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428
+ + V L L + N LT + L ++L N
Sbjct: 219 ---------------VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE 259
Query: 429 LQGSIPSSLGNLTLL 443
L+ + + L
Sbjct: 260 LEKIMYHPFVKMQRL 274
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 24/256 (9%)
Query: 74 QRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSN 131
+T L L + +L + N L ++++NN L I + L+ L LS+
Sbjct: 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSS 174
Query: 132 NSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIG 191
N + + LS +L V N L + + +E L HN I + +
Sbjct: 175 NRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV- 224
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSE 250
L ++ N L L+ L+ +D+++N I F + LE + +S
Sbjct: 225 -NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 281
Query: 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF 310
NR +L + +P L+ L + N+ + + RLE + N ++
Sbjct: 282 NRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKL 335
Query: 311 SRLKNLSWLNMGINNL 326
S L L + N+
Sbjct: 336 STHHTLKNLTLSHNDW 351
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 64/421 (15%), Positives = 132/421 (31%), Gaps = 59/421 (14%)
Query: 71 RRHQRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQ-IGRQDMLEGLV 128
R + L L++ I T+ +L L +++L++N L + G L+ L
Sbjct: 47 RACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104
Query: 129 LSNNSFSG-TIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQL 186
L N + + + +NL L + EI GL L L I +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Query: 187 PASIGNLSSLLAFDVREN----ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS 242
S+ ++ + + + +L D L +R L L D F + P S
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224
Query: 243 LEVISLSENRFT--------------------------------------GSLPVDTGVN 264
++ ++ + T + V
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324
+R+L + S +++ I ++ LK+L +L++ N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 325 NLGTGTANELDFINLLTNCSKLERLYFNRNRFE--GELPHSVANLSSTIKQIAMGRNRIS 382
+ + L+ L ++N + + L + + + + RN
Sbjct: 345 LMVEEYLKNSACKGAWPS---LQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTFH 400
Query: 383 GTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442
+P + + +L + + + I + L++L++ N L S L L
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQE 455
Query: 443 L 443
L
Sbjct: 456 L 456
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 18/354 (5%)
Query: 104 NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIP 163
+ + IP + ++ L LS N + +L C+NL L + ++ +
Sbjct: 11 DGRSRS-FTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 164 AAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW--GRIDSLVQLRNLLL 221
A L LE L + NH++ + G LSSL ++ N G L NL
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 222 LDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280
L I I F ++SL + + + + ++ ++ L+ + +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI-NL 339
+ + S + +E + + S + T + + L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 340 LTNCSKLERLYFNRNRFEGELPHSVANLSS----------TIKQIAMGRNRISGTIPPEI 389
L +L + F+ G + + TI+++ + + + +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L + +T++ +++ LK+L+ L+L N + +
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 54/361 (14%), Positives = 115/361 (31%), Gaps = 32/361 (8%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
+ + L L L + LS +RY+ L + + ++ +
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
S + + L+ ++ + + +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 194 SSLLAFDVRENILWGRID-SLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSEN 251
++ + + L+ + L + + + + +P ++ SLE + LSEN
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344
Query: 252 RFTGSLPVDTGV--NLPNLRQLSPNGNNFT--GSIPVSLSNASRLEMIEFSRNQFSGRVS 307
++ P+L+ L + N+ L L ++ SRN F +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403
Query: 308 VDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANL 367
+ + +LN+ + LE L + N + + L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCIP---------QTLEVLDVSNNNLD-SFSLFLPRL 453
Query: 368 SSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGG 426
+++ + RN++ T+P L + I RNQL ++P I L +LQ + L
Sbjct: 454 ----QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHT 506
Query: 427 N 427
N
Sbjct: 507 N 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 15/236 (6%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155
+R +++ ++ + ++ + + N+ + +L L +
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343
Query: 156 NYLVGEI---PAAIGGLFKLERLFIFHNHIT--GQLPASIGNLSSLLAFDVRENILWGRI 210
N +V E A G L+ L + NH+ + + L +L + D+ N
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270
DS + L+++ + I +LEV+ +S N S + LP L++
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSL----FLPRLQE 455
Query: 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
L + N ++P S L +++ SRNQ F RL +L + + N
Sbjct: 456 LYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 42/267 (15%), Positives = 85/267 (31%), Gaps = 23/267 (8%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155
+ + + + + L + + T S + + V+
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 156 NYLVGEIPAAIGGLFKLERLFIFHNHIT---GQLPASIGNLSSLLAFDVREN---ILWGR 209
+ + + L LE L + N + + A G SL + +N +
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 210 IDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
+ L+ L+NL LDI+ N F +P + ++LS + L
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLE 434
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
L + NN S + L L+ + SRN+ L + + N L +
Sbjct: 435 VLDVSNNNLD-SFSLFLPR---LQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV 488
Query: 330 TANELDFINLLTNCSKLERLYFNRNRF 356
D + L++++ + N +
Sbjct: 489 PDGIFD------RLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 17/233 (7%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNSF 134
+ RL + + LS L ++ I + N+ + +P + LE L LS N
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 135 SGTIPTN---LSRCSNLIELFVDTNYL--VGEIPAAIGGLFKLERLFIFHNHITGQLPAS 189
N +L L + N+L + + + L L L I N +P S
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405
Query: 190 IGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLS 249
+ ++ + R+ + L +LD++ N+ + + L+ + +S
Sbjct: 406 CQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYIS 459
Query: 250 ENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
N+ + P L + + N + L+ I N +
Sbjct: 460 RNKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 8e-23
Identities = 57/326 (17%), Positives = 114/326 (34%), Gaps = 34/326 (10%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
+ + N++ L + L ++ + A +++L++ N I
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSL-----VQLRNLLLLDIAFNHFSGTIPPPIF 238
P N+ L + N + SL L L ++ N+ I F
Sbjct: 113 YLPPHVFQNVPLLTVLVLERN----DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 167
Query: 239 -NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297
+SL+ + LS NR T + + +P+L + + N + +L+ +E ++
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218
Query: 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357
S N + V L+ L + NNL L N L + + N E
Sbjct: 219 SHNSIN---VVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELE 267
Query: 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417
+ H + ++++ + NR+ + + + +L L + N L + +
Sbjct: 268 KIMYHPFVKMQR-LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324
Query: 418 NLQLLNLGGNFLQGSIPSSLGNLTLL 443
L+ L L N + S+ L L
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 5e-16
Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 48/318 (15%)
Query: 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
V I +NL ++ +D L + + ++ +
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 188 ASIGNLSSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEV 245
A + + + ++ + + + + L + FN +PP +F N+ L V
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127
Query: 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
+ L N + SLP N P L LS + NN + + L+ ++ S N+ +
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 184
Query: 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365
VD S + +L N+ N L T L +E L + N
Sbjct: 185 -HVDLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSIN-------- 224
Query: 366 NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLG 425
+ + V L L + N LT + L ++L
Sbjct: 225 ------------------VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS 262
Query: 426 GNFLQGSIPSSLGNLTLL 443
N L+ + + L
Sbjct: 263 YNELEKIMYHPFVKMQRL 280
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 24/256 (9%)
Query: 74 QRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSN 131
+T L L + +L + N L ++++NN L I + L+ L LS+
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSS 180
Query: 132 NSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIG 191
N + + LS +L V N L + + +E L HN I
Sbjct: 181 NRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNV 232
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSE 250
L+ L ++ N L L+ L+ +D+++N I F + LE + +S
Sbjct: 233 ELTIL---KLQHNNL-TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 287
Query: 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF 310
NR +L + +P L+ L + N+ + + RLE + N ++
Sbjct: 288 NRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKL 341
Query: 311 SRLKNLSWLNMGINNL 326
S L L + N+
Sbjct: 342 STHHTLKNLTLSHNDW 357
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 45/321 (14%), Positives = 98/321 (30%), Gaps = 23/321 (7%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
+ ++++S + + N+ EL + N L A + KLE L + N +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
+ +LS+L D+ N + L+ ++ L A N+ S +
Sbjct: 72 E--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSRG--QGK 122
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQF 302
+ I L+ N+ T L ++ L N + +++ LE + N
Sbjct: 123 KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 303 SGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH 362
V L L++ N L + + + + N+ +
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNKLV-LIEK 231
Query: 363 SVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLL 422
++ + ++ + N + + T+ + + E L
Sbjct: 232 ALRFSQN-LEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 423 NLGGNFLQGSIPSSLGNLTLL 443
+ G + L L
Sbjct: 290 HYGAYCCEDLPAPFADRLIAL 310
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 9e-21
Identities = 49/390 (12%), Positives = 113/390 (28%), Gaps = 33/390 (8%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
R + + S+ L+ + ++ ++L+ N + LE L LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 134 FSGTIP-----------------TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176
T+ L ++ L N + + + + ++
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIY 126
Query: 177 IFHNHITGQLPASIGNLSSLLAFDVRENIL--WGRIDSLVQLRNLLLLDIAFNHFSGTIP 234
+ +N IT G S + D++ N + + L L++ +N +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ + L+ + LS N+ + + + +S N I +L + LE
Sbjct: 186 GQVV-FAKLKTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
+ N F ++ KN + + T + + T +
Sbjct: 242 FDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL---GHYGAYCCE 297
Query: 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414
+ L + G+ + + E + + Q T+ ++
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVT 356
Query: 415 E-LKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ L L + + L
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAEL 386
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 34/271 (12%), Positives = 69/271 (25%), Gaps = 36/271 (13%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQ--IGRQDMLEGLVLSNNSF 134
+ L N I G S ++Y++L N + + D LE L L N
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLS 194
+ + + L L + +N L + + + + +N + + ++
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237
Query: 195 SLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254
+L FD+R N +N + +A + +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 255 ----------------------------GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL 286
L + N R++ + I
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECER-ENQARQREIDALKEQYRTVIDQVT 356
Query: 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
+E + +VS L
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 17/163 (10%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340
+I N +R ++ + + + ++ N+ L++ N L +A + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD------L 54
Query: 341 TNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTI 400
+KLE L + N + +LS+ ++ + + N + E+ S+ L
Sbjct: 55 APFTKLELLNLSSNVLYE--TLDLESLST-LRTLDLNNNYVQ-----ELLVGPSIETLHA 106
Query: 401 DRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
N ++ + + + + L N + G + +
Sbjct: 107 ANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 64/340 (18%), Positives = 116/340 (34%), Gaps = 53/340 (15%)
Query: 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158
LR + ++ G L ++P + L L NN + + NL L + N +
Sbjct: 32 HLRVVQCSDLG-LEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN 218
P A L KLERL++ N + +LP + +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------PKT 122
Query: 219 LLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFT-GSLPVDTGVNLPNLRQLSPNGN 276
L L + N + + +F ++ + V+ L N + + L +
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
N T +IP L L + N+ + + L NL+ L + N++
Sbjct: 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----- 233
Query: 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE-------I 389
L N L L+ N N+ ++P +A+ I+ + + N IS I
Sbjct: 234 -GSLANTPHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNNNIS-AIGSNDFCPPGYN 289
Query: 390 RKLVSLNWLTIDRNQLTGT-IPPEI-GELKNLQLLNLGGN 427
K S + +++ N + I P + + LG
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 60/305 (19%), Positives = 105/305 (34%), Gaps = 42/305 (13%)
Query: 62 CQWTGVICGRRH---------QRVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFL 111
C V C LDL+N I + NL L + L NN +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK-I 88
Query: 112 GEIPPQIGRQ-DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF 170
+I P LE L LS N +P + + L EL V N + + GL
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLN 145
Query: 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFS 230
++ + + N + + + G ++ L + IA + +
Sbjct: 146 QMIVVELGTNPLK--------------SSGIENGAFQG-------MKKLSYIRIADTNIT 184
Query: 231 GTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290
TIP + SL + L N+ T + + L NL +L + N+ + SL+N
Sbjct: 185 -TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLY 350
L + + N+ +V + K + + + NN+ +N+ T + +
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 351 FNRNR 355
N
Sbjct: 300 LFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 7e-16
Identities = 47/246 (19%), Positives = 92/246 (37%), Gaps = 30/246 (12%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
L+NL L + N S I P F + LE + LS+N+ LP L+
Sbjct: 70 GDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQ 124
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF-SGRVSVD-FSRLKNLSWLNMGINNLG 327
+L + N T + +++ ++E N S + F +K LS++ + N+
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
T L L+ + N+ S+ L++ + ++ + N IS +
Sbjct: 185 TIPQGLP---------PSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSIS-AVDN 233
Query: 388 EI-RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGN---------FLQGSIPSSL 437
L L ++ N+L +P + + K +Q++ L N F +
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 438 GNLTLL 443
+ + +
Sbjct: 293 ASYSGV 298
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 66/351 (18%), Positives = 129/351 (36%), Gaps = 37/351 (10%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHI 182
+ + LS NS + T+ SR +L L V+ I GL L L + +N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 183 TGQLPASI-GNLSSLLAFDVRENILWGRI---DSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
QL L++L + + L G + + L +L +L + N+ P F
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 239 -NISSLEVISLSENRFTGSLPVD----------TGVNLPNLRQLSPNGNNFTGSIPVSLS 287
N+ V+ L+ N+ S+ + T + L ++ N +
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL--LTNC-- 343
+ + ++ S N F ++ F + + I + + N N
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 344 -----SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNW 397
S ++ ++++ L SV + + ++Q+ + +N I+ I L L
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327
Query: 398 LTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
L + +N L +I + L L++L+L N ++ ++ L NL L
Sbjct: 328 LNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 6e-19
Identities = 84/408 (20%), Positives = 147/408 (36%), Gaps = 54/408 (13%)
Query: 62 CQWTGVIC-GRRHQRV-------TRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLG 112
IC R +V +DL SI L+ L L+++ +
Sbjct: 10 VIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGL 68
Query: 113 EIPPQIGRQ-DMLEGLVLSNNSFSGTIPTN-LSRCSNLIELFVDTNYLVGEI--PAAIGG 168
I R L L L N F + T + +NL L + L G +
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 169 LFKLERLFIFHNHITGQLPASI-GNLSSLLAFDVREN-----------ILWGRIDSLVQL 216
L LE L + N+I PAS N+ D+ N G+ +L++L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 217 RNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLP--VDTGVNLPNLRQLSPN 274
++ L D+ F +S+ + LS N F S+ + ++ L +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 275 GNN-----FTGSIPVSLSN-------ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322
+ F + N AS ++ + S+++ + FS +L L +
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 323 INNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV-ANLSSTIKQIAMGRNRI 381
N + N++D N + L +L ++N G + + NL ++ + + N I
Sbjct: 308 QNEI-----NKID-DNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDK-LEVLDLSYNHI 359
Query: 382 SGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGN 427
+ + L +L L +D NQL ++P I L +LQ + L N
Sbjct: 360 R-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 45/242 (18%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANN--------GFLGEIPPQIGRQDMLEGLVLS 130
D+ +G + + ++L+ N F I + +L
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 131 NNSFSGTIPTNLSRC-------SNLIELFVDTNYLVGEIPAAI-GGLFKLERLFIFHNHI 182
+SF T + S + + + + + ++ LE+L + N I
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEI 311
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NIS 241
++ + AF L +LL L+++ N +I +F N+
Sbjct: 312 N-KIDDN--------AFW--------------GLTHLLKLNLSQNFLG-SIDSRMFENLD 347
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSRN 300
LEV+ LS N +L + + LPNL++L+ + N S+P + L+ I N
Sbjct: 348 KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
Query: 301 QF 302
+
Sbjct: 406 PW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 362 HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQ 420
H V L + + + + N I+ +L L +L +++ I L +L
Sbjct: 23 HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82
Query: 421 LLNLGGNFLQGSIPS----SLGNLTLL 443
+L L N + + L NL +L
Sbjct: 83 ILKLDYNQFL-QLETGAFNGLANLEVL 108
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 2e-19
Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 41/273 (15%)
Query: 178 FHNHITGQ---LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234
F+N I+G ++ N + + L + + S ++P
Sbjct: 18 FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLS-SLP 75
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ + V+ +++N SLP +L L N + ++P ++ L++
Sbjct: 76 DNLP--PQITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELPASLKHLDV 127
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
NQ + + L ++N N L L + LE L N
Sbjct: 128 ---DNNQLT---MLP-ELPALLEYINADNNQLTM----------LPELPTSLEVLSVRNN 170
Query: 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSL----NWLTIDRNQLTGTIP 410
+ LP +L + + + N + ++P + + N++T IP
Sbjct: 171 QLT-FLPELPESL----EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223
Query: 411 PEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
I L + L N L I SL T
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 9e-15
Identities = 55/313 (17%), Positives = 98/313 (31%), Gaps = 67/313 (21%)
Query: 127 LVLSNNSFSGT---IPTNLSRC----SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH 179
LS NSF T + + N V + + + + L +
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFN 239
+++ LP ++ + +L+I N ++P
Sbjct: 69 LNLS-SLPDNLPP-------------------------QITVLEITQNALI-SLPE---L 98
Query: 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
+SLE + +NR + +LP +L+ L + N T +P + LE I
Sbjct: 99 PASLEYLDACDNRLS-TLPEL----PASLKHLDVDNNQLT-MLPELPAL---LEYINADN 149
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + + +L L++ N L L LE L + N E
Sbjct: 150 NQLT----MLPELPTSLEVLSVRNNQLTF----------LPELPESLEALDVSTNLLE-S 194
Query: 360 LPHSVA---NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416
LP + T NRI+ IP I L + ++ N L+ I + +
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253
Query: 417 KNLQLLNLGGNFL 429
+ +
Sbjct: 254 TAQPDYHGPRIYF 266
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 69/370 (18%), Positives = 136/370 (36%), Gaps = 48/370 (12%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
+T LD N SI T + L+ L + +N + + + + L L +N
Sbjct: 42 ATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK 96
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
+ +++ + L L DTN L ++ + L L N +T + +
Sbjct: 97 LTN---LDVTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT---EIDVSHN 147
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
+ L D N ++D + L LD +FN + + L ++ N
Sbjct: 148 TQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNI 203
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
T L ++ L L + N T + ++ ++L + S N + +D S L
Sbjct: 204 T-KLDLN---QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT---ELDVSTL 253
Query: 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQ 373
L+ L+ +L E+D LT+ ++L R EL V + + +
Sbjct: 254 SKLTTLHCIQTDL-----LEID----LTHNTQLIYFQAEGCRKIKELD--VTHNTQ-LYL 301
Query: 374 IAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSI 433
+ I+ + + + L +L ++ +LT + + L+ L+ +Q
Sbjct: 302 LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DF 354
Query: 434 PSSLGNLTLL 443
S+G + L
Sbjct: 355 S-SVGKIPAL 363
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 56/341 (16%), Positives = 108/341 (31%), Gaps = 54/341 (15%)
Query: 122 DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181
D V + T + + + L L + + ++ I L L +L N+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNIS 241
IT + ++L N L + L L L+ N + +
Sbjct: 76 ITTL---DLSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCDTNKLTKL---DVSQNP 127
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L ++ + N T + V + L +L + N + ++ ++L ++ S N+
Sbjct: 128 LLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361
+ +D S+ K L+ LN NN+ +LD +L L + N+ E+
Sbjct: 182 IT---ELDVSQNKLLNRLNCDTNNI-----TKLDL----NQNIQLTFLDCSSNKLT-EID 228
Query: 362 HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT--------------- 406
V L+ + N ++ + L L L + L
Sbjct: 229 --VTPLTQ-LTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282
Query: 407 ----GTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++ L LL+ + S L L
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 44/278 (15%), Positives = 84/278 (30%), Gaps = 28/278 (10%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T LD V + L ++ + N + E+ + + +L L N+ +
Sbjct: 151 TELDCHLNKK--ITKLDVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNIT- 204
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
+ L++ L L +N L EI + L +L N +T + LS L
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKL 256
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
+ + + N L+ + + + L ++ T
Sbjct: 257 TTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-E 311
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
L + P L L N T + +S+ ++L+ + ++ L
Sbjct: 312 LDLS---QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPAL 363
Query: 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
+ T L N LT + L N
Sbjct: 364 NNNFEAEGQTITMPKETLT-NNSLTIAVSPDLLDQFGN 400
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 59/340 (17%), Positives = 110/340 (32%), Gaps = 54/340 (15%)
Query: 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158
LR + ++ G L +P +I L L NN S + +L L + N +
Sbjct: 34 HLRVVQCSDLG-LKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN 218
A L KL++L+I NH+ ++P ++ +
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-------------------------PSS 124
Query: 219 LLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFT-GSLPVDTGVNLPNLRQLSPNGN 276
L+ L I N +P +F + ++ I + N L L L +
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
T IP L L + N+ D R L L +G N +
Sbjct: 183 KLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG---- 235
Query: 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI------- 389
L+ L L+ + N+ +P + +L ++ + + N I+ +
Sbjct: 236 --SLSFLPTLRELHLDNNKLS-RVPAGLPDLKL-LQVVYLHTNNIT-KVGVNDFCPVGFG 290
Query: 390 RKLVSLNWLTIDRNQLT-GTIPPEIGE-LKNLQLLNLGGN 427
K N +++ N + + P + + + G
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 27/237 (11%)
Query: 218 NLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
+ LLD+ N S + F + L + L N+ + + L L++L + N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
+ IP +L S L + N+ FS L+N++ + MG N L F
Sbjct: 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 337 INL------LTNC----------SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNR 380
L ++ L L+ + N+ + + S + ++ +G N+
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQ 228
Query: 381 ISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436
I I L +L L +D N+L+ +P + +LK LQ++ L N + + +
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVN 282
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 17/213 (7%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+P I ++ L N + L D L +L L N + + S +
Sbjct: 47 AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
L+ + S+N + + +L L + N + + + + +
Sbjct: 104 LQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIRKVPKG------VFSGLRNMNCIEM 154
Query: 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP 411
N E A + + + +++ IP ++ +LN L +D N++ I
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIEL 210
Query: 412 EI-GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
E L L LG N ++ SL L L
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 64/261 (24%), Positives = 105/261 (40%), Gaps = 42/261 (16%)
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID--SLVQLRNLLLLDIAFNHF 229
L + N+I + +L L + N + +I+ + L +L L++ N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL 135
Query: 230 SGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN 288
+ IP F +S L + L N S+P +P+L +L L
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD-------------LGE 180
Query: 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348
+LE I S F G L NL +LN+G+ N+ + LT LE
Sbjct: 181 LKKLEYI--SEGAFEG--------LFNLKYLNLGMCNIKD--------MPNLTPLVGLEE 222
Query: 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE-IRKLVSLNWLTIDRNQLTG 407
L + N F P S LSS +K++ + +++S I L SL L + N L+
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS- 279
Query: 408 TIPPEI-GELKNLQLLNLGGN 427
++P ++ L+ L L+L N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 56/281 (19%), Positives = 89/281 (31%), Gaps = 37/281 (13%)
Query: 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLV 159
+ G L E+P I L L N+ +L L + N +
Sbjct: 56 FSKVVCTRRG-LSEVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 160 GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219
A GL L L +F N +T +P+ + L L
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLT-VIPS----------------------GAFEYLSKL 149
Query: 220 LLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
L + N +IP F + SL + L E + + L NL+ L+ N
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFIN 338
+P +L+ LE +E S N F F L +L L + + + N
Sbjct: 209 K-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER------N 260
Query: 339 LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379
+ L L N LPH + + ++ + N
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 24/236 (10%)
Query: 217 RNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
N L++ N+ I F ++ LEV+ L N + V L +L L
Sbjct: 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132
Query: 276 NNFTGSIPV-SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334
N T IP + S+L + N S F+R+ +L L++G +L
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-------KL 184
Query: 335 DFI--NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE-IRK 391
++I L+ L + ++P+ + L ++++ M N I P
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVG-LEELEMSGNHFP-EIRPGSFHG 240
Query: 392 LVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGN---FLQGSIPSSLGNLTLL 443
L SL L + +Q++ I L +L LNL N L + + L L L
Sbjct: 241 LSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 13/210 (6%)
Query: 75 RVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNN 132
+ L L SI + L+ L + L +N +L IP L L L NN
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN 157
Query: 133 SFSGTIPTN-LSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQLPASI 190
+IP+ +R +L+ L + + I A GLF L+ L + +I +P +
Sbjct: 158 PIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-L 214
Query: 191 GNLSSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISL 248
L L ++ N R S L +L L + + S I F ++SL ++L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNL 273
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
+ N + SLP D L L +L + N +
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 37/213 (17%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+P I S+ ++L EN + DT +L +L L N+ + + +
Sbjct: 68 EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
L +E N + S F L L L + N + + + L RL
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------AFNRVPSLMRLDL 178
Query: 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIP 410
++ I L +L +L + +
Sbjct: 179 GEL------------------------KKLE-YISEGAFEGLFNLKYLNLGMCNIKD--M 211
Query: 411 PEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
P + L L+ L + GN P S L+ L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 54/309 (17%), Positives = 105/309 (33%), Gaps = 56/309 (18%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHI 182
++ L LSNN + ++L RC NL L + +N + I + L LE L + +N++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NIS 241
+ L +S F L +L L++ N + +F +++
Sbjct: 113 S-NLSSS--------WFK--------------PLSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L+++ + + L L +L + ++ P SL + + + Q
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI--NLLTNCSKLERLYFNRNRFEGE 359
+ + ++ L + +L T +EL N L +
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-- 267
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKN 418
+ + ++ L L RNQL ++P I L +
Sbjct: 268 ------------------------QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302
Query: 419 LQLLNLGGN 427
LQ + L N
Sbjct: 303 LQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 8e-15
Identities = 45/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
L + NL L + N + TI F ++ SLE + LS N + +L L +L
Sbjct: 70 SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT 127
Query: 270 QLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSWLNMGINNLG 327
L+ GN + SL S+ ++L+++ ++ F+ L L L + ++L
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
+ L + + L + + L +++S+++ + + +
Sbjct: 188 SYEPK------SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS 240
Query: 388 EI--------RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP----S 435
E+ K + + I L + + ++ L L N L+ S+P
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298
Query: 436 SLGNLTLL 443
L +L +
Sbjct: 299 RLTSLQKI 306
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 17/218 (7%)
Query: 75 RVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQDM--LEGLVLSN 131
+ LDL + LS LS L ++NL N + + L+ L + N
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGN 158
Query: 132 NSFSGTIPTN-LSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASI 190
I + + L EL +D + L P ++ + + L + L +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218
Query: 191 GNLSSLLAFDVRENIL---------WGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNIS 241
SS+ ++R+ L G +SL++ + I + + IS
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277
Query: 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279
L + S N+ S+P L +L+++ + N +
Sbjct: 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 53/265 (20%), Positives = 94/265 (35%), Gaps = 19/265 (7%)
Query: 76 VTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNS 133
V LDL N I +S L+ + L +NG + I LE L LS N
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111
Query: 134 FSGTIPTNL-SRCSNLIELFVDTNYLVGEIPAAI-GGLFKLERLFIFHNHITGQLPASI- 190
S + ++ S+L L + N ++ L KL+ L + + ++
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 191 GNLSSLLAFDVRENILWG-RIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISL 248
L+ L ++ + L SL ++N+ L + + SS+E + L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229
Query: 249 SENRFTG-------SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
+ + ++ + R + + + L+ S L +EFSRNQ
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288
Query: 302 FSGRVSVDFSRLKNLSWLNMGINNL 326
F RL +L + + N
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 42/214 (19%), Positives = 85/214 (39%), Gaps = 16/214 (7%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV-SLSNAS 290
+IP + +++ + LS NR T + NL+ L N +I S S+
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100
Query: 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLY 350
LE ++ S N S S F L +L++LN+ N T L +L ++ +KL+ L
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILR 155
Query: 351 FNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGT 408
++ A L+ ++++ + + + + P+ + + +++ L + Q
Sbjct: 156 VGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-L 212
Query: 409 IPPEI-GELKNLQLLNLGGNFLQGSIPSSLGNLT 441
+ +++ L L L S L
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 261 TGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLN 320
++ + + SIP L+ ++ ++ S N+ + + D R NL L
Sbjct: 26 ASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALV 82
Query: 321 MGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV-ANLSSTIKQIAMGRN 379
+ N + T + ++ LE L + N L S LSS + + + N
Sbjct: 83 LTSNGINTIEED------SFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSS-LTFLNLLGN 134
Query: 380 RISGTIPPEI--RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIPSS 436
T+ L L L + I + L L+ L + + LQ P S
Sbjct: 135 PYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
Query: 437 LGNLTLL 443
L ++ +
Sbjct: 194 LKSIQNV 200
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 42/261 (16%)
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHF 229
L + N I S +L L + N + I + L NL L++ N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL 124
Query: 230 SGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN 288
+ TIP F +S L+ + L N S+P +P+LR+L L
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD-------------LGE 169
Query: 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348
RL I S F G L NL +LN+ + NL I LT KL+
Sbjct: 170 LKRLSYI--SEGAFEG--------LSNLRYLNLAMCNL--------REIPNLTPLIKLDE 211
Query: 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE-IRKLVSLNWLTIDRNQLTG 407
L + N P S L ++++ M +++I I L SL + + N LT
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT- 268
Query: 408 TIPPEI-GELKNLQLLNLGGN 427
+P ++ L +L+ ++L N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 4e-16
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 23/259 (8%)
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQL 186
++ + +P +S +N L + N + + L LE L + NHI
Sbjct: 48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSL-----VQLRNLLLLDIAFNHFSGTIPPPIF-NI 240
+ L++L ++ +N R+ ++ V L L L + N +IP F I
Sbjct: 105 IGAFNGLANLNTLELFDN----RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159
Query: 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
SL + L E + + L NLR L+ N IP +L+ +L+ ++ S N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217
Query: 301 QFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL 360
S F L +L L M + + N F NL L + N L
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--AFDNL----QSLVEINLAHNNLT-LL 270
Query: 361 PHSVANLSSTIKQIAMGRN 379
PH + +++I + N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 22/235 (9%)
Query: 217 RNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
N LL++ N I F ++ LE++ LS N ++ + L NL L
Sbjct: 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335
N T + S+L+ + N S F+R+ +L L++G L
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-------RLS 174
Query: 336 FI--NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKL 392
+I S L L E+P+ + L + ++ + N +S I P + L
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK-LDELDLSGNHLS-AIRPGSFQGL 230
Query: 393 VSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGN---FLQGSIPSSLGNLTLL 443
+ L L + ++Q+ I L++L +NL N L + + L +L +
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 13/208 (6%)
Query: 77 TRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNSF 134
L L I T+ L+ L + L +N L IP L+ L L NN
Sbjct: 91 EILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 135 SGTIPTNL-SRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQLPASIGN 192
+IP+ +R +L L + + I A GL L L + ++ ++P +
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP 205
Query: 193 LSSLLAFDVREN-ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSE 250
L L D+ N + R S L +L L + + I F N+ SL I+L+
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264
Query: 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
N T LP D L +L ++ + N +
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 9e-17
Identities = 43/237 (18%), Positives = 86/237 (36%), Gaps = 22/237 (9%)
Query: 218 NLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFT-GSLPVDTGVNLPNLRQLSPNG 275
+ L++ N ++P +F ++ L +SLS N + + +L+ L +
Sbjct: 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSWLNMGINNLGTGTANEL 334
N ++ + +LE ++F + F L+NL +L++ +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-- 144
Query: 335 DFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLV 393
+ S LE L N F+ + + + + + ++ + P L
Sbjct: 145 ----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199
Query: 394 SLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQ-------GSIPSSLGNLTL 442
SL L + N ++ L +LQ+L+ N + PSSL L L
Sbjct: 200 SLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 45/260 (17%), Positives = 97/260 (37%), Gaps = 14/260 (5%)
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQ- 185
+ ++ + ++PT + S+ L +++N L L +L +L + N ++ +
Sbjct: 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 186 -LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSL 243
S +SL D+ N + + + L L LD ++ +F ++ +L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQF 302
+ +S L +L L GN+F + P + L ++ S+ Q
Sbjct: 129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 303 SGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH 362
F+ L +L LNM NN + + L+ L ++ N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------PYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 363 SVANLSSTIKQIAMGRNRIS 382
+ + S++ + + +N +
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 17/217 (7%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT--GSIPVSLSNA 289
++P I SS + L N+ SLP L L +LS + N + G S
Sbjct: 21 SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERL 349
+ L+ ++ S N +S +F L+ L L+ +NL + ++ + L L
Sbjct: 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYL 131
Query: 350 YFNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTG 407
+ + + LSS ++ + M N P+I +L +L +L + + QL
Sbjct: 132 DISHTHTR-VAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188
Query: 408 TIPPEI-GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ P L +LQ+LN+ N L L
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 16/176 (9%)
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333
N T S+P + S +E N+ F +L L+ L++ N L
Sbjct: 15 NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKL 392
+ L+ L + N + + L ++ + + + + L
Sbjct: 72 QSDFGT----TSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSL 125
Query: 393 VSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
+L +L I I L +L++L + GN Q + + L NLT L
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-11
Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 32/233 (13%)
Query: 77 TRLDL-RNQ-SIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134
T+L L N S G S + L+Y++L+ NG + + + LE L +++
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL 113
Query: 135 SGTIPTNL-SRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
++ NLI L + + GL LE L + N
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----- 168
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENR 252
D +LRNL LD++ + P F ++SSL+V+++S N
Sbjct: 169 -----------------DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN 210
Query: 253 FTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL--SNASRLEMIEFSRNQFS 303
F SL L +L+ L + N+ + S L + ++N F+
Sbjct: 211 FF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 57/355 (16%), Positives = 118/355 (33%), Gaps = 23/355 (6%)
Query: 103 INLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI 162
++ + NG L +P + ++ L +S N S +++ S L L + N +
Sbjct: 5 VDRSKNG-LIHVPKDLSQK--TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 163 PAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL-----WGRIDSLVQLR 217
+ +LE L + HN + S +L D+ N ++ QL+
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP--NLRQLSPNG 275
L ++ H + PI +++ +V+ + + + + +L + P
Sbjct: 119 FL---GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN---NLGTGTAN 332
F + VS+ + LE+ + S S L L N N T N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 333 ELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST----IKQIAMGRNRISGTIPPE 388
I L + + + + +G+L + S T + + +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++N + ++ L+ N L ++ + G+LT L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 62/372 (16%), Positives = 138/372 (37%), Gaps = 32/372 (8%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPP---QIGRQDMLEGLVLSNNS 133
L L + + + +L+ + + + + + P Q + L + +N
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER------LFIFHNHITGQLP 187
F + ++ +NL + + + L KL+ L + + T
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 188 ASIGNL---SSLLAFDVRENILWGRID------SLVQLRNLLLLDIAFNHFSGTIPPPIF 238
I L +++ F + L G++D S L+ L + + + F
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
S++ + + + + + + + L + N T ++ + + + LE +
Sbjct: 298 IFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 299 RNQFS--GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRF 356
NQ +++ +++K+L L++ N++ + + D L L + N
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWT----KSLLSLNMSSNIL 411
Query: 357 EGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GE 415
+ L IK + + N+I +IP ++ KL +L L + NQL ++P I
Sbjct: 412 TDTIFRC---LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466
Query: 416 LKNLQLLNLGGN 427
L +LQ + L N
Sbjct: 467 LTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 67/389 (17%), Positives = 131/389 (33%), Gaps = 30/389 (7%)
Query: 77 TRLDL-RNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSF 134
LDL N + GN+S L+++ L+ I LVL
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 135 SGTIPTNLSRC--SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGN 192
P L +L +F + ++ + LE I + +
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 193 LSSLLAFDVRENILWGRID----------SLVQLRNLLLLDIAFNHFSGTIPPPIFNISS 242
L+ L N+ I+ LV + I+ G + F+ S
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 243 LEVISLSENRFT----GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
+ +LS ++ G N+ + + + S S ++FS
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
N + V + L L L + +N L + + L++L ++N
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM----KSLQQLDISQNSVSY 388
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418
+ + + ++ + M N ++ TI + + L + N++ +IP ++ +L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEA 445
Query: 419 LQLLNLGGNFLQGSIP----SSLGNLTLL 443
LQ LN+ N L+ S+P L +L +
Sbjct: 446 LQELNVASNQLK-SVPDGIFDRLTSLQKI 473
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 56/375 (14%), Positives = 118/375 (31%), Gaps = 25/375 (6%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSF 134
T L++ I + + +LS LR + +++N + + + LE L LS+N
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKL 81
Query: 135 SGTIPTNLSRCSNLIELFVDTNYL-VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
NL L + N I G + +L+ L + H+ I +L
Sbjct: 82 VKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
+ V +G + L++ + + I ++S V +L +
Sbjct: 139 NISKVLLVLGE-TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
L + ++ N ++ ++ + I + V + +
Sbjct: 198 KCVLEDNKCSYFLSI-LAKLQTNPKLSNLTLNNIETTWNSFIRILQL-------VWHTTV 249
Query: 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQ 373
S N+ + + +L + ++ + F + + S +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKAL--SIHQVVSDVFGF---PQSYIYEIFSNMNI 304
Query: 374 IAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ--- 430
+ K+ L N LT T+ G L L+ L L N L+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 431 --GSIPSSLGNLTLL 443
+ + + +L L
Sbjct: 365 KIAEMTTQMKSLQQL 379
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 44/354 (12%), Positives = 114/354 (32%), Gaps = 38/354 (10%)
Query: 8 FCCLATLSLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGV 67
T SL ++ ++K + + + ++ + + + +++
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVS-VKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218
Query: 68 ICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQ-----D 122
+ + ++ S L + + Y +++N G++ +
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
L + ++ F SN+ + + L +N +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS 242
T + + G+L+ L ++ N QL+ L + S
Sbjct: 337 TDTVFENCGHLTELETLILQMN----------QLKELSKIAEMTTQMK-----------S 375
Query: 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L+ + +S+N + +L L+ + N T +I L R+++++ N+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433
Query: 303 SGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRF 356
+ +L+ L LN+ N L + D + L++++ + N +
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFD------RLTSLQKIWLHTNPW 480
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 1e-14
Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 24/235 (10%)
Query: 209 RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268
+I + ++ + + ++S++ I + + + LPN+
Sbjct: 13 QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNV 67
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
+L NGN T I L+N L + N+ +S LK L L++ N +
Sbjct: 68 TKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD 123
Query: 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE 388
IN L + +LE LY N+ ++ L+ + +++ N+IS I P
Sbjct: 124 --------INGLVHLPQLESLYLGNNKITD--ITVLSRLTK-LDTLSLEDNQIS-DIVP- 170
Query: 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ L L L + +N ++ + + LKNL +L L + NL +
Sbjct: 171 LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 6e-11
Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 18/224 (8%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L S + + + +++ ++ + + + + I L + +LF+ N +T
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT 78
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
P + NL +L + EN + + SL L+ L L + N S I + ++ L
Sbjct: 79 DIKP--LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQL 133
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
E + L N+ T + L L LS N + I L+ ++L+ + S+N S
Sbjct: 134 ESLYLGNNKITDITVLS---RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188
Query: 304 GRVSVD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346
+ + LKNL L + N + +
Sbjct: 189 ---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 5e-10
Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 16/227 (7%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
+ +L+ +S+ T + L+ + I N+ + + I + L L+ N +
Sbjct: 23 TIKDNLKKKSV--TDAVTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT 78
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
L+ NL LF+D N + ++ + + L KL+ L + HN I+ + + +L
Sbjct: 79 DI--KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132
Query: 196 LLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255
L + + N + I L +L L L + N S I P + ++ L+ + LS+N +
Sbjct: 133 LESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD 189
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
+ L NL L SN ++ +
Sbjct: 190 LRALA---GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 13/231 (5%)
Query: 217 RNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
RN + L I F LE I +S+N + D NLP L ++
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 276 NNFTGSIPVS-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334
N I N L+ + S V L++ N
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148
Query: 335 DFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLV 393
F+ L + L+ N+N + E+ +S N + + N + +P ++
Sbjct: 149 -FVGL---SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS 202
Query: 394 SLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L I R ++ ++P LK L+ + N + L L
Sbjct: 203 GPVILDISRTRIH-SLPSYGLENLKKLRARST-YNLKKLPTLEKLVALMEA 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 12/207 (5%)
Query: 124 LEGLVLSNNSFSGTIPTN-LSRCSNLIELFV-DTNYLVGEIPAAIGGLFKLERLFIFHNH 181
LE + +S N I + S L E+ + N L+ P A L L+ L I +
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLL-LLDIAFNHFSGTIPPPIF 238
I + + D+++NI I +S V L +L + N I F
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV-SLSNASRLEMIEF 297
N + L+ ++LS+N LP D L + S+P L N +L
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST 233
Query: 298 SRNQFSGRVSVDFSRLKNLSWLNMGIN 324
+ +L L ++
Sbjct: 234 YNLKKLP----TLEKLVALMEASLTYP 256
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-14
Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 37/220 (16%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
S RNL +L + N + I F ++ LE + LS+N S+ T L L
Sbjct: 50 ASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
L + + L F L L +L + N L
Sbjct: 109 TLHLDRCGLQ-ELGPGL-----------------------FRGLAALQYLYLQDNALQAL 144
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI 389
+ + L L+ + NR + L S + ++ + +NR++ + P
Sbjct: 145 PD------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVA-HVHPHA 196
Query: 390 -RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGN 427
R L L L + N L+ +P E L+ LQ L L N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 22/220 (10%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+P I ++ + I L NR + +P + NL L + N + + +
Sbjct: 25 AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 292 LEMIEFSRNQFSGRVSVD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLY 350
LE ++ S N V F L L L++ L L + L+ LY
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------LFRGLAALQYLY 135
Query: 351 FNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGT 408
N + LP +L + + + + NRIS ++P R L SL+ L + +N++
Sbjct: 136 LQDNALQ-ALPDDTFRDLGN-LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-H 191
Query: 409 IPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
+ P +L L L L N L ++P + L L L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 53/249 (21%), Positives = 85/249 (34%), Gaps = 33/249 (13%)
Query: 107 NNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI 166
L +P I + + L N S + C NL L++ +N L AA
Sbjct: 19 PQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 167 GGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAF 226
GL LE+L + N + + F L L L +
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPA--------TFH--------------GLGRLHTLHLDR 114
Query: 227 NHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS 285
+ P +F +++L+ + L +N +LP DT +L NL L +GN + +
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSK 345
L+ + +N+ + F L L L + NNL L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALAPLRA 226
Query: 346 LERLYFNRN 354
L+ L N N
Sbjct: 227 LQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 33/209 (15%)
Query: 75 RVTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNN 132
+T L L + + + L+ L ++L++N L + P L L L
Sbjct: 57 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 133 SFSGTIPTN-LSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQLPASI 190
+ + L L++ N L +P L L LF+ N I+
Sbjct: 116 GLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS------- 166
Query: 191 GNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLS 249
V E G L +L L + N + + P F ++ L + L
Sbjct: 167 ---------SVPERAFRG-------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLF 209
Query: 250 ENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
N + +LP + L L+ L N N +
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 20/177 (11%)
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333
++PV + + + I N+ S + F +NL+ L + N L A
Sbjct: 19 PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA- 74
Query: 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RK 391
F L + LE+L + N + + L + + + R + + P + R
Sbjct: 75 -AFTGL----ALLEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQ-ELGPGLFRG 127
Query: 392 LVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
L +L +L + N L +P + +L NL L L GN + S+P L +L L
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 6e-14
Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 22/280 (7%)
Query: 167 GGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVREN----ILWGRIDSLVQLRNLLL 221
GG LE L + I SL VR + ++ + L
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 222 LDIAFNHFSGTIPPPIFNIS--SLEVISLSENRFTG---SLPVDTGVNLPNLRQLSPNGN 276
L + +GT PPP+ + L +++L + L P L+ LS
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS----RLKNLSWLNMGINNLGTGTAN 332
+ + L ++ S N G + + + L L + +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---ETP 216
Query: 333 ELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKL 392
L +L+ L + N + S + + + + +P +
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--P 273
Query: 393 VSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432
L+ L + N+L P EL + L+L GN S
Sbjct: 274 AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 45/268 (16%), Positives = 82/268 (30%), Gaps = 38/268 (14%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPY---VGNLSFLRYINLANNGFLGEIPPQIGRQDM--LEG 126
+ + RL +R I + V +S L+ + L N G PP + L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQL 186
L L N S++ L+ ++ L+ L I H
Sbjct: 126 LNLRNVSWAT-RDAWLAELQQWLKP-------------------GLKVLSIAQAHSLNFS 165
Query: 187 PASIGNLSSLLAFDVRENILWGRI--------DSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
+ +L D+ +N G L+ L L + SG
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
L+ + LS N + + L L+ + +P L ++L +++ S
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNL 326
N+ + L + L++ N
Sbjct: 283 YNRLDR--NPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 25/209 (11%), Positives = 53/209 (25%), Gaps = 11/209 (5%)
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS---NASRLEMI 295
SLE + + + +L++L+ I S L+ +
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 296 EFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNR 355
+ +G + + N+ T + L+ L +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 356 FEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI----RKLVSLNWLTIDRNQLT---GT 408
+ + + + N G K +L L + + G
Sbjct: 161 SL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 409 IPPEIGELKNLQLLNLGGNFLQGSIPSSL 437
LQ L+L N L+ + +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPS 248
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 6/163 (3%)
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
N G+ V L R R + +K+LS + + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSST-IKQIAMGRNRISG--TIPPEIRKLV 393
+ +L S L+ L G P + + + + + + E+++ +
Sbjct: 89 LRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 394 --SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434
L L+I + ++ L L+L N G
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 49/276 (17%)
Query: 168 GLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN 227
L ++ +++T + +L + + I+ + L NL+ L++ N
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDN 73
Query: 228 HFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
T P+ N++ + + LS N + L +++ L T P L+
Sbjct: 74 QI--TDLAPLKNLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITDVTP--LA 126
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLE 347
S L+++ NQ + + L NL +L++G + + L N SKL
Sbjct: 127 GLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSD--------LTPLANLSKLT 176
Query: 348 RLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407
L + N+ I I + L +L + + NQ++
Sbjct: 177 TLKADDNK---------------ISDI------------SPLASLPNLIEVHLKNNQISD 209
Query: 408 TIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
P + NL ++ L + NL +
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 55/253 (21%), Positives = 97/253 (38%), Gaps = 21/253 (8%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
++ ++ T +L + ++ G + I + + L GL L +N
Sbjct: 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI- 75
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
T L + + EL + N L + +AI GL ++ L + IT P + LS+
Sbjct: 76 -TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 196 LLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255
L + N + I L L NL L I S P+ N+S L + +N+ +
Sbjct: 131 LQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD 187
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315
P+ +LPNL ++ N + P L+N S L ++ + + + N
Sbjct: 188 ISPLA---SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT---NQPVFYNNN 239
Query: 316 LSWLNMGINNLGT 328
L N+ G
Sbjct: 240 LVVPNVVKGPSGA 252
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-13
Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 18/198 (9%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+PP + ++ LSEN + + T + L QL+ + T + V
Sbjct: 24 ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPV 78
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
L ++ S NQ + + L L+ L++ N L + L +L+ LY
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG------ALRGLGELQELYL 131
Query: 352 NRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTI 409
N + LP + ++++++ N ++ +P + L +L+ L + N L TI
Sbjct: 132 KGNELK-TLPPGLLTPTPK-LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 410 PPEIGELKNLQLLNLGGN 427
P L L GN
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 27/216 (12%)
Query: 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLP-NLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ ++S ++ + T +LP +LP + L + N +L +RL
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
+ R + + ++ V L L L++ N L + L L L L + N
Sbjct: 60 LNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL---QSLPLLGQTL----PALTVLDVSFN 110
Query: 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI 413
R LP ++++ + N + T+PP + L L++ N LT +P +
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167
Query: 414 -GELKNLQLLNLGGNFLQGSIP------SSLGNLTL 442
L+NL L L N L +IP L L
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 24/193 (12%)
Query: 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ + + +++ + N T ++P L + + L + S N L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376
+ LN+ L + + L L + N+ + LP L + + +
Sbjct: 58 TQLNLDRAELTK--------LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL-TVLDV 107
Query: 377 GRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIP 434
NR++ ++P R L L L + N+L T+PP + L+ L+L N L +P
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Query: 435 S----SLGNLTLL 443
+ L NL L
Sbjct: 165 AGLLNGLENLDTL 177
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 44/203 (21%), Positives = 62/203 (30%), Gaps = 32/203 (15%)
Query: 100 LRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158
++L+ N L L L L + + L L + N L
Sbjct: 33 TTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89
Query: 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN 218
+P L L L + N +T LP A L +L+
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLG--------AL-----------RGLGELQE 128
Query: 219 LLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNN 277
L L N T+PP + LE +SL+ N T LP L NL L N+
Sbjct: 129 LYL---KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 278 FTGSIPVSLSNASRLEMIEFSRN 300
+IP + L N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 57/323 (17%), Positives = 126/323 (39%), Gaps = 29/323 (8%)
Query: 122 DMLEGLVLSNNSFSGTIPTNLSRCSNL----IELFVDTNYLVGEIPAAIGGLFKLERLFI 177
+L + N+ FS + +++ +L I+L + + + + L + +
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Query: 178 FHNHITGQLPASIGNL---SSLLAFDVRENILWGRID------SLVQLRNLLLLDIAFNH 228
H T + + + ++ + RID S L++L++ +
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316
Query: 229 FSGTIPPPIFNI-SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
F ++++ + + + LS + T + + + + L+ N FT S+ S
Sbjct: 317 FL-FSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374
Query: 288 NASRLEMIEFSRNQFS--GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSK 345
RL+ + RN +V++ + +L L++ +N+L + +
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-----AYDRTCAWAES 429
Query: 346 LERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405
+ L + N G + L +K + + NRI +IP ++ L +L L + NQL
Sbjct: 430 ILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485
Query: 406 TGTIPPEI-GELKNLQLLNLGGN 427
++P + L +LQ + L N
Sbjct: 486 K-SVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 59/371 (15%), Positives = 118/371 (31%), Gaps = 25/371 (6%)
Query: 76 VTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSNNS 133
L L SI L LS LR + L++N + + + LE L +S+N
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYL-VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGN 192
++ +L L + N V + G L KL L + + +
Sbjct: 112 LQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 193 LS-SLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251
L S + D+ + G +Q+ N +L + F+ S ++++L + LS
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 252 RFTG------SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN---ASRLEMIEFSRNQF 302
+ + P L ++ T V L +E +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288
Query: 303 SGRVSVDFSRLKNLSWLNMGINNLGTG--TANELDFINLLTNCSKLERLYFNRNRFEGEL 360
+ R+ + + ++ I ++ ++ ++ ++ L + F +
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLSISDTPF---I 344
Query: 361 PHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQ 420
S+ + +N + ++ L L L + RN L KN+
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMS 403
Query: 421 LLNLGGNFLQG 431
L L
Sbjct: 404 SLETLDVSLNS 414
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 50/335 (14%), Positives = 96/335 (28%), Gaps = 24/335 (7%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI-GGLFKLERLFIFHNHI 182
+ L LS NS S ++S S L L + N + + + LE L + HN +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 183 TGQLPASIGNLSSLLAFDVRENIL-----WGRIDSLVQLRNLLLLDIAFNHFSGTIPPPI 237
+ ++SL D+ N +L +L L L F +
Sbjct: 113 QN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA---AKFR-QLDLLP 165
Query: 238 FNISSLEVISLSENRFT---GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
L I L + G N L + + F+ + +S++ L++
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 295 --IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
I+ + ++ + + LN+ + ++ T + +E L
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIY 284
Query: 353 RNRFEGELPHSVANLSSTIKQIAM----GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408
+ S T + M + +N + +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344
Query: 409 IPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ LN N S+ L L
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 52/332 (15%), Positives = 96/332 (28%), Gaps = 26/332 (7%)
Query: 7 IFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTG 66
T L L+ H + N + L + L + N + +
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVN--MSVNALGHLQLSNIKL---NDENCQRLMTFLSE 244
Query: 67 VICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-----Q 121
+ G VT + + Y+N+ N I +
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304
Query: 122 DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181
L + N F + S + + + + L N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364
Query: 182 ITGQLPASIGNLSSLLAFDVREN---ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
T + L L ++ N + + +L LD++ N +
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424
Query: 239 NI-SSLEVISLSENRFTG----SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLE 293
S+ V++LS N TG LP P ++ L + N SIP +++ L+
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325
+ + NQ F RL +L ++ + N
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 10/205 (4%)
Query: 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138
++NQ + + + L+ + L + N F+ ++
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT----GQLPASIGNLS 194
S L L + N L + L + +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428
Query: 195 SLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
S+L ++ N+L G + L + +LD+ N +IP + ++ +L+ ++++ N+
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNF 278
S+P L +L+ + + N +
Sbjct: 486 K-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 36/216 (16%)
Query: 216 LRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274
L +LD++ TI + ++S L + L+ N SL + L +L++L
Sbjct: 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108
Query: 275 GNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSWLNMGINNLGTGTAN 332
N S+ + + L+ + + N + FS L NL L++ N + +
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 333 ELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKL 392
+L + + + + N ++ I P K
Sbjct: 168 DLR---------------------------VLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 393 VSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGN 427
+ L L +D NQL ++P I L +LQ + L N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 47/233 (20%)
Query: 222 LDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280
LD++FN + F + L+V+ LS ++ +L +L L GN
Sbjct: 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89
Query: 281 SIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339
S+ + S S L+ + + + LK L LN+ N +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----QSFKLPEY 144
Query: 340 LTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNW- 397
+N + LE L + N+ + +I R L +
Sbjct: 145 FSNLTNLEHLDLSSNKIQ--------------------------SIYCTDLRVLHQMPLL 178
Query: 398 ---LTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
L + N + I P + L+ L L N L+ S+P L +L +
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKI 229
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 48/213 (22%), Positives = 70/213 (32%), Gaps = 20/213 (9%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHI 182
+ L LS N + L L + + I A L L L + N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88
Query: 183 TGQLPASI-GNLSSLLAFDVRENILWGRIDSL-----VQLRNLLLLDIAFNHFSGTIPPP 236
L LSSL E + SL L+ L L++A N P
Sbjct: 89 Q-SLALGAFSGLSSLQKLVAVET----NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 237 IF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR----QLSPNGNNFTGSIPVSLSNASR 291
F N+++LE + LS N+ S+ L + L + N I R
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324
L+ + NQ F RL +L + + N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 18/176 (10%)
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333
NF IP +L + ++ S N S F L L++ + E
Sbjct: 15 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIE 68
Query: 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKL 392
L++ L L N + L + S+++++ ++ ++ L
Sbjct: 69 DGAYQSLSH---LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123
Query: 393 VSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
+L L + N + PE L NL+ L+L N +Q SI L + LL
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/179 (13%), Positives = 58/179 (32%), Gaps = 13/179 (7%)
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325
+ + + ++ + + L I + + N+ L + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIH 77
Query: 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385
N ++ S LERL + +++ L+S + + + + +I
Sbjct: 78 ATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSI 128
Query: 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP-SSLGNLTLL 443
+I L +N + + N I P + L L+ LN+ + + L L
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 9/182 (4%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
+ L S + ++ L YI LAN + ++ I ++ L ++N
Sbjct: 23 KAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIH 77
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
+ +S SNL L + + + + GL L L I H+ + I L
Sbjct: 78 ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
+ + D+ N I L L L L+I F+ I + L +
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193
Query: 254 TG 255
G
Sbjct: 194 GG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-09
Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 39/189 (20%)
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
++SL I+L+ T ++ N++ L+ N + T P +S S LE +
Sbjct: 42 QMNSLTYITLANINVTDLTGIE---YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
+ + S L +L+ L++ + + + K+ + + N
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI------LTKINTLPKVNSIDLSYN---- 146
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418
I T ++ L L L I + + I +
Sbjct: 147 --------------------GAI--TDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182
Query: 419 LQLLNLGGN 427
L L
Sbjct: 183 LNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 12/144 (8%)
Query: 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQL 271
+ Q+ +L + +A + + I +++ ++++ T P+ L NL +L
Sbjct: 39 TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERL 93
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTA 331
G + T +LS + L +++ S + + + L ++ +++ N T
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-- 151
Query: 332 NELDFINLLTNCSKLERLYFNRNR 355
I L +L+ L +
Sbjct: 152 -----IMPLKTLPELKSLNIQFDG 170
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 34/209 (16%), Positives = 75/209 (35%), Gaps = 14/209 (6%)
Query: 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV-SLSNASRLEMIEFSR 299
S + + L E ++P NLPN+ ++ + + + S N S++ IE
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 300 NQFSGRVSVD-FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358
+ + D L L +L + L + + + L N +
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKVYSTDIFFILEITDNPYMT 144
Query: 359 ELPHSV-ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI--GE 415
+P + L + + + N + ++ L+ + +++N+ I + G
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203
Query: 416 LKNLQLLNLGGNFLQGSIPS-SLGNLTLL 443
LL++ + ++PS L +L L
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 35/216 (16%)
Query: 76 VTRLDLRNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134
L L + T+ + NL + I ++ + L ++ +SF
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLES---------------HSF 76
Query: 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQLPA--SIG 191
S + + + + I A+ L L+ L IF+ + P +
Sbjct: 77 YNL--------SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVY 127
Query: 192 NLSSLLAFDVRENILWGRI--DSLVQLRNLLL-LDIAFNHFSGTIPPPIFNISSLEVISL 248
+ ++ +N I ++ L N L L + N F+ ++ FN + L+ + L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186
Query: 249 SENRFTGSLPVDTGVNLPN-LRQLSPNGNNFTGSIP 283
++N++ + D + + L + + T ++P
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 19/196 (9%)
Query: 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
+ L N+ + ++ + + F N+S + I + R + D LP L+
Sbjct: 49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108
Query: 270 QLSPNGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLS-WLNMGINN 325
L P + + ++E + N + + V+ F L N + L + N
Sbjct: 109 FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGT 384
+ N +KL+ +Y N+N++ + + S + + + ++
Sbjct: 168 FTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219
Query: 385 IPPE----IRKLVSLN 396
+P + +++L++ N
Sbjct: 220 LPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 36/208 (17%)
Query: 75 RVTRLDL-RNQSIGGTLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRQDMLEGLVLSN 131
++R+ + + ++ L + NLS + +I + N L I P +L+ L + N
Sbjct: 56 NISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
Query: 132 NSFSGTIP--TNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFK-LERLFIFHNHITGQLP 187
P T + L + N + IP A GL L +++N T +
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFN--ISSLEV 245
AF+ +L + L N + I F S +
Sbjct: 173 GY--------AFN------------GTKLDAVYLNK---NKYLTVIDKDAFGGVYSGPSL 209
Query: 246 ISLSENRFTGSLPVDTGVNLPNLRQLSP 273
+ +S+ T +LP +L L +
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARNT 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 24/234 (10%)
Query: 210 IDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLR 269
I S + ++ + + ++S++ I + + + LPN+
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNVT 71
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTG 329
+L NGN T I L+N L + N+ LK L L++ N +
Sbjct: 72 KLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISD- 126
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI 389
IN L + +LE LY N+ ++ L+ + +++ N+IS I P +
Sbjct: 127 -------INGLVHLPQLESLYLGNNKITD--ITVLSRLTK-LDTLSLEDNQIS-DIVP-L 174
Query: 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L L L + +N ++ + + LKNL +L L + NL +
Sbjct: 175 AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155
+ NL + + Q ++ ++ +N+ ++ + N+ +LF++
Sbjct: 22 AFAETIKDNLKKKS-VTDAVTQNELNS-IDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ 215
N L P + L L LF+ N + L S+ +L L + + N + I+ LV
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGI-SDINGLVH 132
Query: 216 LRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
L L L + N T + ++ L+ +SL +N+ + +P+ L L+ L +
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLYLSK 187
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
N+ + + +L+ L+++E + + S L + + +L
Sbjct: 188 NHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 36/241 (14%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
T+L L + + P + NL L ++ L N + ++ + L+ L L +N
Sbjct: 71 TKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKK-LKSLSLEHNGI-- 124
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
+ L L L++ N + + L KL+ L + N I+
Sbjct: 125 SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS------------- 169
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256
I L L L L ++ NH S + + +L+V+ L +
Sbjct: 170 ------------DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL-N 214
Query: 257 LPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P++ NL + + +S +++ +F+ VS F + +
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 274
Query: 317 S 317
Sbjct: 275 G 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 5e-10
Identities = 74/430 (17%), Positives = 128/430 (29%), Gaps = 112/430 (26%)
Query: 1 MLSSISIFCCLATLSLSLLLHSHKTICANSNET-DRLALLAIKSQLHDPL----GVTSSW 55
ML + + I + L L + L V ++
Sbjct: 201 MLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 56 N-NSMNL-CQ------WTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLAN 107
N+ NL C+ + V T + L + S+ T V +L L+Y++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSL-LLKYLDCR- 314
Query: 108 NGFLGEIPPQIGRQDMLEG--LVLS---------NNSFSGTIPTNLSRCSNLIELFVDTN 156
++P + +L LS ++ N + + +IE + N
Sbjct: 315 ---PQDLPRE-----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--N 364
Query: 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS---- 212
L PA +F +RL +F +P + LS ++W +
Sbjct: 365 VLE---PAEYRKMF--DRLSVFPPSA--HIPTIL--LS----------LIWFDVIKSDVM 405
Query: 213 --LVQLRNLLLLDIAFNHFSGTIP-------PPIFNISSLEVISLSENRFTGSLPVDTGV 263
+ +L L++ + +IP + N +L + + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-- 463
Query: 264 NLPNLRQLSPNGNN--FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321
L P + F I L N E + R F +DF +L
Sbjct: 464 -------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFR------FLEQ 505
Query: 322 GINNLGTGTANELDFINLLT-----------NCSKLERLYFNRNRFEGELPHSVANL--- 367
I + T +N L N K ERL F LP NL
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICS 562
Query: 368 -SSTIKQIAM 376
+ + +IA+
Sbjct: 563 KYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 65/413 (15%), Positives = 126/413 (30%), Gaps = 146/413 (35%)
Query: 121 QDMLEGLVLSNNSFSGTI--PTNLSRC-----------SNLIELFVDT----NY--LVGE 161
QDM + +LS I +S +++ FV+ NY L+
Sbjct: 39 QDMPKS-ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 162 I------PAAIGGLF--KLERLF----IFHN-HIT-----GQLPASIGNLS--------- 194
I P+ + ++ + +RL+ +F +++ +L ++ L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 195 ------SLLAFDV-RE---------NILW---GRIDS----LVQLRNLLL-LDIAFNHFS 230
+ +A DV I W +S L L+ LL +D + S
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 231 GTIPPPIFNISSL-EVIS--LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
I S+ + L + L V L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------------------------LL 251
Query: 288 NASRLEMIE-FSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346
N + F+ S ++ + +R K + + L T + + +
Sbjct: 252 NVQNAKAWNAFN---LSCKILLT-TRFKQV------TDFLSAATTTHISLDHHSMTLTPD 301
Query: 347 ERL-----YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSL--NWLT 399
E Y + +LP V + +++ I IR ++ NW
Sbjct: 302 EVKSLLLKYLDCR--PQDLPREVLTTNPRR--LSI--------IAESIRDGLATWDNWKH 349
Query: 400 IDRNQLTGTI--------PPEIGEL-KNLQLLNLGGNFLQGSIPSSLGNLTLL 443
++ ++LT I P E ++ L + + IP+ L L+L+
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTIL--LSLI 395
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 42/223 (18%)
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
IP+N+ ++ +L + +N L A L KL L++ N + LPA
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG------- 79
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTG 255
F +L+NL L + N +P +F + +L + L N+
Sbjct: 80 -IFK--------------ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPV----SLSNASRLEMIEFSRNQFSGRVSVDFS 311
SLP +L L LS N S+P L++ L+ + NQ F
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS---LKELRLYNNQLKRVPEGAFD 178
Query: 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
+L L L + N L D + KL+ L N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFD------SLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 56/219 (25%), Positives = 85/219 (38%), Gaps = 45/219 (20%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
IP I + + + L N+ + SLP L LR L N N ++P +
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI----- 80
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
F LKNL L + N L F L L L
Sbjct: 81 ------------------FKELKNLETLWVTDNKLQALPIGV--FDQL----VNLAELRL 116
Query: 352 NRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTI 409
+RN+ + LP V +L+ + +++G N + ++P + KL SL L + NQL +
Sbjct: 117 DRNQLK-SLPPRVFDSLTK-LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RV 172
Query: 410 PPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
P +L L+ L L N L+ +P SL L +L
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 30/201 (14%)
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI-GGLFKLERLFIFHNHITGQ 185
L L +N S R + L L+++ N L +PA I L LE L++ N +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99
Query: 186 LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLE 244
LP + FD QL NL L + N ++PP +F +++ L
Sbjct: 100 LPIGV--------FD--------------QLVNLAELRLDRNQLK-SLPPRVFDSLTKLT 136
Query: 245 VISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFS 303
+SL N SLP L +L++L N +P + L+ ++ NQ
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
Query: 304 GRVSVDFSRLKNLSWLNMGIN 324
F L+ L L + N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 4e-09
Identities = 50/321 (15%), Positives = 91/321 (28%), Gaps = 20/321 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L+ ++SR + + VG + + L +
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
G+ S L L A + + + + + + L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
LS + T + L++L P +I + + L + + FS
Sbjct: 352 FRCELSVEKSTVLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409
Query: 304 GRVSVDFSRLKNLSWL------NMGINNLGTGTANELDFINL-------LTNCSKLERLY 350
+VD R L L + + L + L + L
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469
Query: 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG-TI 409
+ NR LP ++A L ++ + N + + + L L L + N+L
Sbjct: 470 LSHNRLR-ALPPALAALRC-LEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525
Query: 410 PPEIGELKNLQLLNLGGNFLQ 430
+ L LLNL GN L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 32/243 (13%), Positives = 78/243 (32%), Gaps = 17/243 (6%)
Query: 203 ENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262
++ W D + ++ L D+ + +P F + S E P
Sbjct: 283 LSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC 342
Query: 263 VNLPNLRQLSP--NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLN 320
+ QL + + L + L+ +E + + L L +
Sbjct: 343 RDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402
Query: 321 MGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNR 380
+ + L ++ + + + ++ + +
Sbjct: 403 ETLQYF-----STLKAVDPMRAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKD 452
Query: 381 ISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440
+ T+ + +L+ + L + N+L +PP + L+ L++L N L+ ++ + NL
Sbjct: 453 L--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANL 507
Query: 441 TLL 443
L
Sbjct: 508 PRL 510
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 26/212 (12%)
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI---------- 138
L L+ + ++ L+ L N TI
Sbjct: 340 CWCRDSATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398
Query: 139 ---PTNLSRCSNLIEL--------FVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
L S L + + + E + L + H +T +
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VL 456
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVIS 247
+ L + D+ N L +L LR L +L + N + + N+ L+ +
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514
Query: 248 LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279
L NR S + V+ P L L+ GN+
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339
++P SL S +++ S N S R +RL NL L + N+L ++
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---- 85
Query: 340 LTNCSKLERLYFNRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNW 397
L L + N L + ++L + ++ + + N I + + L
Sbjct: 86 --PVPNLRYLDLSSNHLH-TLDEFLFSDLQA-LEVLLLYNNHIV-VVDRNAFEDMAQLQK 140
Query: 398 LTIDRNQLTGTIPPEI----GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
L + +NQ++ P E+ +L L LL+L N L+ + L L
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 42/203 (20%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+P + S ++ LS N + T L NL L + N+ I
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEA----- 83
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
F + NL +L++ N+L T L ++ LE L
Sbjct: 84 ------------------FVPVPNLRYLDLSSNHLHTLDEF------LFSDLQALEVLLL 119
Query: 352 NRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI----RKLVSLNWLTIDRNQLT 406
N + + +++ ++++ + +N+IS P E+ KL L L + N+L
Sbjct: 120 YNNHIV-VVDRNAFEDMAQ-LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 407 GTIPPEIGELKNLQL--LNLGGN 427
++ +L L L N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 36/181 (19%)
Query: 100 LRYINLANNGFLGEIPPQIGRQDM--LEGLVLSNNSFSGTIPTN-LSRCSNLIELFVDTN 156
++L++N L + + + L L+LS+N + I + NL L + +N
Sbjct: 41 TALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98
Query: 157 YLVGEIPAAI-GGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ 215
+L + + L LE L +++NHI + + AF+
Sbjct: 99 HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRN--------AFE--------------D 134
Query: 216 LRNLLLLDIAFNHFSGTIPPPIF----NISSLEVISLSENRFTGSLPVDTGVNLPNLRQL 271
+ L L ++ N S P + + L ++ LS N+ LP+ LP +
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKN 192
Query: 272 S 272
Sbjct: 193 G 193
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
E ++ + F L L+WLN+ N L T +A D LT L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---DLTE---LGTLGLA 91
Query: 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPP 411
N+ LP V + + + ++ +G N++ ++P + +L L L ++ NQL +IP
Sbjct: 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148
Query: 412 EI-GELKNLQLLNLGGNFLQGSIP----SSLGNLT 441
+L NLQ L+L N LQ S+P LG L
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 25/216 (11%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
P F + +L + T +N + + + I L N
Sbjct: 12 IFPDDAF--AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQ-YLPNVRY 67
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
L + N+ +S L NL++L + N L + D LT L+ L
Sbjct: 68 LAL---GGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFD---KLT---NLKELVL 116
Query: 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIP 410
N+ + LP V + + + + + N++ ++P + KL +L L + NQL ++P
Sbjct: 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLP 173
Query: 411 PEI-GELKNLQLLNLGGNFLQGSIPS----SLGNLT 441
+ +L L+ L L N L+ S+P L +L
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 23/208 (11%)
Query: 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295
P +++ +L + T + L ++ + + +N S+ + + L+ +
Sbjct: 14 PDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68
Query: 296 EFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNR 355
S NQ S +S L L L++ N L L+ I L RL+ + N
Sbjct: 69 HLSHNQIS-DLS-PLKDLTKLEELSVNRNRL-----KNLNGIPSAC----LSRLFLDNNE 117
Query: 356 FEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415
S+ +L + ++ +++ N++ +I + L L L + N++T +
Sbjct: 118 LRD--TDSLIHLKN-LEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTGG-LTR 170
Query: 416 LKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
LK + ++L G L +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 18/205 (8%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L S T + S + D + + + A + L+ L + HN I+
Sbjct: 21 AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS 76
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL 243
+ + +L+ L V N R+ +L + + L + ++ + ++ +L
Sbjct: 77 D--LSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNL 130
Query: 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
E++S+ N+ + + L L L +GN T + L+ ++ I+ + +
Sbjct: 131 EILSIRNNKLKSIVMLG---FLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKCV 185
Query: 304 GRVSVDFSRLKNLSWLNMGINNLGT 328
+ L N + G
Sbjct: 186 ---NEPVKYQPELYITNTVKDPDGR 207
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 293 EMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
+ + N+F+ + F +L L +N N + + + + +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE---GASG---VNEILL 88
Query: 352 NRNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTI 409
NR E + H + L S +K + + NRI+ + + L S+ L++ NQ+T T+
Sbjct: 89 TSNRLE-NVQHKMFKGLES-LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TV 144
Query: 410 PPEI-GELKNLQLLNLGGN 427
P L +L LNL N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
I +N FS K L +++ N + + L + L L
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ---GLRS---LNSLVLY 88
Query: 353 RNRFEGELPHSV-ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIP 410
N+ ELP S+ L S ++ + + N+I+ + + + L +LN L++ N+L TI
Sbjct: 89 GNKIT-ELPKSLFEGLFS-LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144
Query: 411 PEIGE-LKNLQLLNLGGN 427
L+ +Q ++L N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 137 TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
IPTNL + E+ ++ N + P A KL R+ + +N I+ +L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD------- 74
Query: 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTG 255
AF LR+L L + N + +P +F + SL+++ L+ N+
Sbjct: 75 -AFQ--------------GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117
Query: 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L VD +L NL LS N + S ++ + ++N F
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI-GGLFKLERLFIFHNHITGQ 185
+ L N+ P S L + + N + E+ GL L L ++ N IT +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94
Query: 186 LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLE 244
LP S+ F + L L+ LLL N + + F ++ +L
Sbjct: 95 LPKSL--------F-----------EGLFSLQLLLL---NANKIN-CLRVDAFQDLHNLN 131
Query: 245 VISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278
++SL +N+ ++ T L ++ + N F
Sbjct: 132 LLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLL 422
NL TI +I + +N I IPP L + + NQ++ + P+ L++L L
Sbjct: 28 TNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85
Query: 423 NLGGNFLQGSIPS----SLGNLTLL 443
L GN + +P L +L LL
Sbjct: 86 VLYGNKIT-ELPKSLFEGLFSLQLL 109
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQL 405
+ +N + +P + +++I + N+IS + P+ + L SLN L + N++
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLTLL 443
T +P + L +LQLL L N + + L NL LL
Sbjct: 93 T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLL 133
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 37/153 (24%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
+++ NQ + F L NL L +G N LG D LT L L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD---SLTQ---LTVLDLG 96
Query: 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE 412
N+ LP +V + +LV L L + N+LT +P
Sbjct: 97 TNQLT-VLPSAVFD------------------------RLVHLKELFMCCNKLT-ELPRG 130
Query: 413 IGELKNLQLLNLGGNFLQGSIPS----SLGNLT 441
I L +L L L N L+ SIP L +LT
Sbjct: 131 IERLTHLTHLALDQNQLK-SIPHGAFDRLSSLT 162
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQL 405
+ LY + N+ +L V + +K++ +G N++ +P + L L L + NQL
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL 100
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
T +P + L +L+ L + N L +P + LT L
Sbjct: 101 T-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLN 423
A + + + + + N+I+ P L++L L + NQL +P + L L +L+
Sbjct: 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94
Query: 424 LGGNFLQGSIPS----SLGNLTLL 443
LG N L +PS L +L L
Sbjct: 95 LGTNQLT-VLPSAVFDRLVHLKEL 117
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQL 405
L N N + + ++ + RN+++ I P + L + N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIPS----SLGNLTLL 443
I ++ L L+ LNL N + + L +LT L
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSL 131
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
S ++ + L +R L LS T SI L ++L+ +E S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
N+ SG + V + NL+ LN+ N + +L I L L+ L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368
S +K L N N L +LE L S+ANL
Sbjct: 15 TPSDVKELVLDNSRSNEG--------KLEGLTDEFEELEFLSTINVGLT-----SIANLP 61
Query: 369 S--TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT--GTIPPEIGELKNLQLLNL 424
+K++ + NR+SG + K +L L + N++ TI P + +L+NL+ L+L
Sbjct: 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDL 120
Query: 425 GGN 427
Sbjct: 121 FNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 26/134 (19%)
Query: 144 RCSNLIELFVDTN-YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202
S++ EL +D + G++ +LE L + +T SI NL L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKL------ 63
Query: 203 ENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262
L L+++ N SG + +L ++LS N+ ++
Sbjct: 64 --------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109
Query: 263 VNLPNLRQLSPNGN 276
L NL+ L
Sbjct: 110 KKLENLKSLDLFNC 123
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQL 405
LY + N+F +P ++N + I + NRIS T+ + + L L + N+L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIP----SSLGNLT 441
IPP LK+L+LL+L GN + +P + L L+
Sbjct: 91 R-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS 129
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLN 423
+ + ++ + N+ + +P E+ L + + N+++ T+ + + L L
Sbjct: 27 KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84
Query: 424 LGGNFLQGSIPS----SLGNLTLL 443
L N L+ IP L +L LL
Sbjct: 85 LSYNRLR-CIPPRTFDGLKSLRLL 107
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 25/128 (19%)
Query: 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIGGLFKLERLFIFHNHITGQL 186
+ + +L NL EL+++ + + + GL +L L I + + +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246
AF L L+++FN ++ SL+ +
Sbjct: 72 APD--------AFH--------------FTPRLSRLNLSFNALE-SLSWKTVQGLSLQEL 108
Query: 247 SLSENRFT 254
LS N
Sbjct: 109 VLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPE-IRKLVSLNWLTIDRNQLTGTIPPEI-GEL 416
+ H + + + ++ + + + +R L L LTI ++ L + P+
Sbjct: 22 DSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79
Query: 417 KNLQLLNLGGNFLQGSIPSSLGNLTL 442
L LNL N L+ ++ L+L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSL 105
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+ + + + + ++LS N + + NLR LS N I + A L
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIK-KIENLDAVADTL 95
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
E + S NQ + +S +L NL L M N + I+ L KLE L
Sbjct: 96 EELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKI-----TNWGEIDKLAALDKLEDLLLA 148
Query: 353 RN 354
N
Sbjct: 149 GN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 138 IPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLL 197
+ LS L + TN + +I +++ G+ L L + N I I NL ++
Sbjct: 40 MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-----KIENLDAVA 92
Query: 198 A----FDVRENILWGRIDSLVQLRNLLLLDIAFNHFSG-TIPPPIFNISSLEVISLSENR 252
+ N + + + +L NL +L ++ N + + + LE + L+ N
Sbjct: 93 DTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151
Query: 253 FTGSLPVDTGV---------NLPNLRQL 271
+ LPNL++L
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 38/154 (24%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
++ N + F L +L+ L +G N L + N LT+ L L +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTS---LTYLNLS 84
Query: 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE 412
N+ + LP+ V + KL L L ++ NQL ++P
Sbjct: 85 TNQLQ-SLPNGVFD------------------------KLTQLKELALNTNQLQ-SLPDG 118
Query: 413 I-GELKNLQLLNLGGNFLQGSIPS----SLGNLT 441
+ +L L+ L L N L+ S+P L +L
Sbjct: 119 VFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ 151
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
+++ + L + NL LS S+ +L +L+ +E S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354
N+ G + + +L NL+ LN+ N L ++ + L L+ L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346
S +S ++M + R + ++ L N N + L L
Sbjct: 3 SGSSGMDMKRRIHLELRNR---TPAAVRELVLDNCKSN--------DGKIEGLTAEFVNL 51
Query: 347 ERLYFNRNRFEGELPHSVANLSS--TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQ 404
E L SV+NL +K++ + NRI G + KL +L L + N+
Sbjct: 52 EFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
Query: 405 LT--GTIPPEIGELKNLQLLNLGGN 427
L T+ P + +L+ L+ L+L
Sbjct: 107 LKDISTLEP-LKKLECLKSLDLFNC 130
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 4e-04
Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 31/211 (14%)
Query: 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295
F I E + VD L + L+ T ++ + L+ +
Sbjct: 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL 198
Query: 296 EFSRNQFSGRV--SVDFSRLKNLSWLNMGI---NNLGTGTANELDFINLLTNCSKLERLY 350
E V + S L NL L + + + G N + L+ L
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258
Query: 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT-- 408
+ + L L + I LT
Sbjct: 259 IVDAEEQNVVVEMFLESDI----------------------LPQLETMDISAGVLTDEGA 296
Query: 409 --IPPEIGELKNLQLLNLGGNFLQGSIPSSL 437
+ + ++K+L+ +N+ N+L + L
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 44/317 (13%), Positives = 81/317 (25%), Gaps = 61/317 (19%)
Query: 71 RRHQRVTRLDLRNQSIGGT----LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEG 126
V + L +IG LS + + L ++ GR
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI--------FTGRVKDEIP 80
Query: 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFK----LERLFIFHNHI 182
L + L +C L + + N + LE L++ +N +
Sbjct: 81 EALR------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSG----TIPPPIF 238
P + ++ L L + N
Sbjct: 135 G---PQAGAKIARALQELAVNK-------KAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 239 NISSLEVISLSENRFTGSLPVDTGV---------NLPNLRQLSPNGNNFTG----SIPVS 285
+ L + + +N G+ L+ L N FT ++ ++
Sbjct: 185 SHRLLHTVKMVQNGIR-----PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRL------KNLSWLNMGINNLGTGTANELDFINL 339
L + L + + S R + L L + N + L + +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-I 298
Query: 340 LTNCSKLERLYFNRNRF 356
L L N NRF
Sbjct: 299 DEKMPDLLFLELNGNRF 315
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 347 ERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQL 405
RL N+ + LPH V + + + ++++ +N+I ++P + KL L L + N+L
Sbjct: 31 TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL 88
Query: 406 TGTIPPEI-GELKNLQLLNLGGNFLQGSIPS----SLGNLT 441
++P + +L L+ L L N L+ S+P L +L
Sbjct: 89 Q-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQ 127
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.68 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.6 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.6 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.56 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.43 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.39 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.39 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.39 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.38 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.34 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.19 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.14 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.13 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.1 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.96 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.75 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.59 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.28 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.25 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.25 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.72 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.54 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.65 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.72 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-54 Score=446.73 Aligned_cols=403 Identities=30% Similarity=0.399 Sum_probs=304.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCcee---cC-------------
Q 047097 28 ANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGT---LS------------- 91 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~---~~------------- 91 (443)
+.+.++|+.||++||+.+.||. .+++|+.+.+||.|.||.|+ .++|+.|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446889999999999999988 89999988899999999998 38999999999988876 33
Q ss_pred ----------ccccCCCCCCEEECCCCcCcccCCc--ccCCCCCCCEEEccCCcCCCCCCccc-cCCCCCcEEecccccc
Q 047097 92 ----------PYVGNLSFLRYINLANNGFLGEIPP--QIGRQDMLEGLVLSNNSFSGTIPTNL-SRCSNLIELFVDTNYL 158 (443)
Q Consensus 92 ----------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~ 158 (443)
..+..+++|++|++++|.+++.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 4677888888888888888887777 88888888888888888887777765 7888888888888888
Q ss_pred eeccCcc---ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 159 VGEIPAA---IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 159 ~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++..|.. +.++++|++|++++|.+++..|. .++++|++|++++|.+.+..+.+..+++|++|++++|.+++.+|.
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 8777665 67778888888888877765543 677888888888888777665577888888888888888877777
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCC-CCCCEEecccCcccccCCccccCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..++.++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 8888888888888888877666653 56777777777777776677666553 7777777777777777777777777
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc--------------------------
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS-------------------------- 368 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-------------------------- 368 (443)
+|++|++++|.+.+..+. ..+..+++|++|++++|.+++.+|..+....
T Consensus 319 ~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 777777777777655441 2356666677777777766666666555542
Q ss_pred cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
++|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.++++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 345555666666666666667777777777777777777777777777777777777777777777766665543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=426.93 Aligned_cols=396 Identities=21% Similarity=0.291 Sum_probs=284.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCCC--------CCCCCCCCCCce---eeeeeCCCCCcEEEEEcCCCCCceecCccccCCCC
Q 047097 31 NETDRLALLAIKSQLHDPLGVT--------SSWNNSMNLCQW---TGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSF 99 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~--------~~w~~~~~~c~~---~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~ 99 (443)
...|+.||.+++.++.++.+.. .+|+.+.++|.| .||.|+.. ++|+.|+|+++.+.|.+|+.++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCcc
Confidence 4578999999999998664432 379999999999 99999876 89999999999999999999999999
Q ss_pred CCEEECCCCcC---------------------------------------------------------------------
Q 047097 100 LRYINLANNGF--------------------------------------------------------------------- 110 (443)
Q Consensus 100 L~~L~L~~n~~--------------------------------------------------------------------- 110 (443)
|++|++++|.+
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 99999998843
Q ss_pred ---------cccCCcccCCCCCCCEEEccCCcCCCC-----------------CCcccc--CCCCCcEEecccccceecc
Q 047097 111 ---------LGEIPPQIGRQDMLEGLVLSNNSFSGT-----------------IPTNLS--RCSNLIELFVDTNYLVGEI 162 (443)
Q Consensus 111 ---------~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~ 162 (443)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 34 788899999999999999999975 899998 9999999999999999999
Q ss_pred CccccCCCCCcEEeccccc-cCC-CCCccccCC------CCCCEEEccCCcCccccc--cccCCCcCcEEecccCcCCCC
Q 047097 163 PAAIGGLFKLERLFIFHNH-ITG-QLPASIGNL------SSLLAFDVRENILWGRID--SLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 163 ~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~--~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.+...+. .+..+++|++|++++|.++|.
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 9999999999999999998 887 788877765 888999998888886656 788888888888888888877
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCC-ccEEeCCCCcCcccCCccccCCC--CCCEEecccCcccccCCcc
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN-LRQLSPNGNNFTGSIPVSLSNAS--RLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~ 309 (443)
+| .+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++..|..
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 77 6777777777777777776 6666544 5666 777777777776 5666555443 6666677666666666655
Q ss_pred cc-------CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc-------CCCEEe
Q 047097 310 FS-------RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS-------TIKQIA 375 (443)
Q Consensus 310 ~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-------~L~~L~ 375 (443)
+. .+++|++|++++|.++.... ..+..+++|++|++++|.++ .+|..++.... +|+.|+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 55 55566666666666654332 23334455555555555555 44443322111 455555
Q ss_pred CcCCcCcccCchhhh--cccCCCeeccccccccccCchhccCCCCCCeeec------ccCcCccccCccccCCC
Q 047097 376 MGRNRISGTIPPEIR--KLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL------GGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 376 l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~ 441 (443)
+++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.+++
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 5555554 4444443 45555555555555553 4444444555555554 33444444554444443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=413.89 Aligned_cols=395 Identities=21% Similarity=0.247 Sum_probs=280.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--Cce------------eeeeeCCCCCcEEEEEcCCCCCcee
Q 047097 29 NSNETDRLALLAIKSQLHDPLGVTSSWNNSM-----NL--CQW------------TGVICGRRHQRVTRLDLRNQSIGGT 89 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~c~~~~~~v~~L~l~~~~l~~~ 89 (443)
.+..+|+.||+++|.++.+| +|+.+. ++ |.| .||.|+.. ++|+.|+|+++.+.|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCc
Confidence 34568999999999999877 565433 55 999 99999874 8999999999999999
Q ss_pred cCccccCCCCCCEEEC-CCCcCccc-------------------------------------------------------
Q 047097 90 LSPYVGNLSFLRYINL-ANNGFLGE------------------------------------------------------- 113 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L-~~n~~~~~------------------------------------------------------- 113 (443)
+|+.++++++|++|+| ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77754433
Q ss_pred ---------------------CCcccCCCCCCCEEEccCCcCCC-----------------CCCcccc--CCCCCcEEec
Q 047097 114 ---------------------IPPQIGRQDMLEGLVLSNNSFSG-----------------TIPTNLS--RCSNLIELFV 153 (443)
Q Consensus 114 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l 153 (443)
+|..|+++++|++|++++|.+++ .+|..++ ++++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 77889999999999999999997 3888887 9999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccc-cCC-CCCccccCCC-------CCCEEEccCCcCccccc--cccCCCcCcEE
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNH-ITG-QLPASIGNLS-------SLLAFDVRENILWGRID--SLVQLRNLLLL 222 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~--~l~~l~~L~~L 222 (443)
++|.+.+.+|..|+++++|++|++++|. +++ .+|..+++++ +|+.|++++|.+...+. .+..+++|+.|
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE
Confidence 9999999999999999999999999998 887 6777665544 88888888888885556 78888888888
Q ss_pred ecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCC-ccEEeCCCCcCcccCCccccCCCC--CCEEeccc
Q 047097 223 DIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN-LRQLSPNGNNFTGSIPVSLSNASR--LEMIEFSR 299 (443)
Q Consensus 223 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~--L~~L~l~~ 299 (443)
++++|.++ .+| .+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.++ .+|..+..++. |+.|++++
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence 88888887 666 7777888888888888887 7776655 6666 888888888777 66666655433 66666666
Q ss_pred CcccccCCc----------------------------c-ccCCCCCCEEECCCCcCCCcCCCchhhh-hhhcCCCCCCEE
Q 047097 300 NQFSGRVSV----------------------------D-FSRLKNLSWLNMGINNLGTGTANELDFI-NLLTNCSKLERL 349 (443)
Q Consensus 300 n~l~~~~~~----------------------------~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~~~L~~L 349 (443)
|.+.+.+|. . +..+++|+.|++++|.+........... ..+.++++|+.|
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEE
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEE
Confidence 666554332 1 1234445555555554442221000000 001122256666
Q ss_pred EccCCcccccCchhHH-hhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc------ccccccCchhccCCCCCCee
Q 047097 350 YFNRNRFEGELPHSVA-NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR------NQLTGTIPPEIGELKNLQLL 422 (443)
Q Consensus 350 ~Ls~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------n~~~~~~p~~~~~l~~L~~L 422 (443)
+|++|+++ .+|..+. ...++|+.|++++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 66666655 5555554 112556666666666664 555566666666666644 55555566666666666666
Q ss_pred ecccCcCccccCccc
Q 047097 423 NLGGNFLQGSIPSSL 437 (443)
Q Consensus 423 ~l~~n~l~~~~p~~l 437 (443)
++++|++ +.+|..+
T Consensus 812 ~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKL 825 (876)
T ss_dssp ECCSSCC-CBCCSCC
T ss_pred ECCCCCC-CccCHhh
Confidence 6666666 4555543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=405.59 Aligned_cols=359 Identities=30% Similarity=0.505 Sum_probs=265.8
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcc-cCCCCCCCEEEccCCcCCCCCCccccCCC-CCcEEe
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRQDMLEGLVLSNNSFSGTIPTNLSRCS-NLIELF 152 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 152 (443)
.++.|++++|.+++..|..+.++++|++|++++|.+++.+|.. ++++++|++|++++|.+.+.+|..+.+++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 3444444444444444444444555555555555544444433 44555555555555555444555554444 555555
Q ss_pred cccccceeccCccccC--CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcC
Q 047097 153 VDTNYLVGEIPAAIGG--LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~ 229 (443)
+++|.+++.+|..+.. +++|++|++++|.+++.+|..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 5555555555555444 566777777777777777777888888888888888777555 6777888888888888888
Q ss_pred CCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcc
Q 047097 230 SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 230 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 888888888888888888888888877777665 7888888888888888888888888888888888888888888888
Q ss_pred ccCCCCCCEEECCCCcCCCcCCCchhh-----------------------------------------------------
Q 047097 310 FSRLKNLSWLNMGINNLGTGTANELDF----------------------------------------------------- 336 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 336 (443)
+..+++|++|++++|.+.+..|..+.-
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 888888888888888888766543210
Q ss_pred -----------hhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 337 -----------INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 337 -----------~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+..+..+++|++|++++|+++|.+|..+..+ +.|+.|++++|+++|.+|..++.+++|+.|+|++|++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 1123446788899999999998899888886 7899999999999989999999999999999999999
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCc
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|.+|+.+..+++|+.|++++|+++|.+|+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999999999999999886
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=351.05 Aligned_cols=364 Identities=20% Similarity=0.153 Sum_probs=215.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 45666666666666655666666666666666666666555555666666666666666555443444555555555555
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCcc--------------------------------------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS-------------------------------------------- 189 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------- 189 (443)
++|.+++..++.+..+++|++|++++|.+++..|..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 555544322222223444444444444333222222
Q ss_pred ---------------------------------------------------------ccCCCCCCEEEccCCcCcccccc
Q 047097 190 ---------------------------------------------------------IGNLSSLLAFDVRENILWGRIDS 212 (443)
Q Consensus 190 ---------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~~~ 212 (443)
++.+++|++|++++|.+...+..
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~ 296 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh
Confidence 33445555555555555544444
Q ss_pred ccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccC--CccccCCC
Q 047097 213 LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI--PVSLSNAS 290 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~ 290 (443)
+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++.. +..+..++
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 5555555555555555554444455555555555555555555555544445666666666666666443 55566667
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.+++..|..+..+ ++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~ 450 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PA 450 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----CTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TT
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----hhhhCcccCCEEECCCCccCCcCHHHHhCC-CC
Confidence 777777777776666666666677777777777766554331 235666777777777777765555555554 66
Q ss_pred CCEEeCcCCcCccc---CchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 371 IKQIAMGRNRISGT---IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 371 L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
|+.|++++|.+++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 77777777777652 22456677777777777777776667777777777777777777777777777666543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=352.24 Aligned_cols=362 Identities=20% Similarity=0.196 Sum_probs=260.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57999999999999998999999999999999999999888999999999999999999999888999999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCc--EEecccCcCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLL--LLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~--~L~l~~n~~~ 230 (443)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. ..+..+++|+ .+++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 999999776788999999999999999999755455556999999999999888775 5666777776 6667666655
Q ss_pred CCCC---------------------------------------------------------------------------h
Q 047097 231 GTIP---------------------------------------------------------------------------P 235 (443)
Q Consensus 231 ~~~~---------------------------------------------------------------------------~ 235 (443)
+..| .
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4333 2
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCc-cccCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLK 314 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 314 (443)
.+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 2444455555555555554 4544433 455555555555555544444555555555555555555543333 255555
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch-hhhccc
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP-EIRKLV 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~ 393 (443)
+|++|++++|.+.+... .+..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++..+. .+..++
T Consensus 351 ~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDC----CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCCEEECCSSCCCEEEE----STTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred cCCEEECCCCccccccC----cchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcc
Confidence 66666666655544320 01345667777777777777765555555554 6677777777777765443 367777
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCccc---cCccccCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS---IPSSLGNLTL 442 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~---~p~~l~~l~~ 442 (443)
+|+.|++++|.+++..|..+..+++|+.|++++|++++. .+..+.++++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 777777777777766677777777777777777777662 2244555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=341.17 Aligned_cols=355 Identities=21% Similarity=0.189 Sum_probs=307.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccC-CcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999998999999999999999999997655 56799999999999999999988899999999999999
Q ss_pred cccccceeccCcc--ccCCCCCcEEeccccccCCCCCcc-ccCCCCCCEEEccCCcCcccc-ccccCC--CcCcEEeccc
Q 047097 153 VDTNYLVGEIPAA--IGGLFKLERLFIFHNHITGQLPAS-IGNLSSLLAFDVRENILWGRI-DSLVQL--RNLLLLDIAF 226 (443)
Q Consensus 153 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~-~~l~~l--~~L~~L~l~~ 226 (443)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+.. ..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887876 899999999999999998776 555554 7899999999
Q ss_pred CcCCCCCChh--------hhCCCCCcEEEcccCCCCccCchhhhc--CCCCccEEeCCCCcCcccC----------Cccc
Q 047097 227 NHFSGTIPPP--------IFNISSLEVISLSENRFTGSLPVDTGV--NLPNLRQLSPNGNNFTGSI----------PVSL 286 (443)
Q Consensus 227 n~~~~~~~~~--------l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~----------~~~l 286 (443)
|.+.+..+.. +..+++|++|++++|.+.+..|..+.. ..++++.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9998654433 336689999999999998777765542 2489999999998655321 1112
Q ss_pred c--CCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH
Q 047097 287 S--NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364 (443)
Q Consensus 287 ~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 364 (443)
. ..++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh------hHhcCcccCCEEECCCCccCCcChhHh
Confidence 2 23689999999999999999999999999999999999988776 678899999999999999997767777
Q ss_pred HhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCc
Q 047097 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 365 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
..+ ++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 344 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 665 8999999999999988899999999999999999999965566778999999999999999999883
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=358.12 Aligned_cols=345 Identities=20% Similarity=0.221 Sum_probs=297.0
Q ss_pred CceecCccccCCCCCCEEECCCCcCccc-----------------CCcccC--CCCCCCEEEccCCcCCCCCCccccCCC
Q 047097 86 IGGTLSPYVGNLSFLRYINLANNGFLGE-----------------IPPQIG--RQDMLEGLVLSNNSFSGTIPTNLSRCS 146 (443)
Q Consensus 86 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~ 146 (443)
+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.+++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 334 788899999999999999999986 999999 999999999999999999999999999
Q ss_pred CCcEEeccccc-cee-ccCccccCC------CCCcEEeccccccCCCCCc--cccCCCCCCEEEccCCcCccccccccCC
Q 047097 147 NLIELFVDTNY-LVG-EIPAAIGGL------FKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQL 216 (443)
Q Consensus 147 ~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~l~~l 216 (443)
+|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|+.|++++|.+.+..+.+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 99999999998 988 889888876 99999999999999 8898 8999999999999999999544488899
Q ss_pred CcCcEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhhhcC--CCCccEEeCCCCcCcccCCcccc------
Q 047097 217 RNLLLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDTGVN--LPNLRQLSPNGNNFTGSIPVSLS------ 287 (443)
Q Consensus 217 ~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~------ 287 (443)
++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+. . +++|++|++++|.+++..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 99999999999998 88888999999 999999999998 8887554 3 34899999999999998888887
Q ss_pred -CCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh-hhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 288 -NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI-NLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 288 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
.+++|++|++++|++++..+..+..+++|++|++++|.++.......... ..+..+++|++|++++|.++ .+|..++
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 78899999999999995544556679999999999999984443111100 01223348999999999999 7888776
Q ss_pred -hhccCCCEEeCcCCcCcccCchhhhcccCCCeecc------ccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 366 -NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTI------DRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 366 -~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l------~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
...++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 224889999999999996 8889999999999999 56778889999999999999999999999 68887553
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=347.36 Aligned_cols=355 Identities=19% Similarity=0.224 Sum_probs=221.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56888888888888888778888888888888888888777888888888888888888888777888888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-ccccCC---------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQL--------------- 216 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l--------------- 216 (443)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.. ..+..+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 8888876666778888888888888888875 46888888888888888887665433 111111
Q ss_pred ------------CcCcEEecccCcCC------------------------------------------------------
Q 047097 217 ------------RNLLLLDIAFNHFS------------------------------------------------------ 230 (443)
Q Consensus 217 ------------~~L~~L~l~~n~~~------------------------------------------------------ 230 (443)
.+|+.|++++|.+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 12233333322211
Q ss_pred --------------------------CCCChhhhCCCCCcEEEcccCCCCccCc--------------------------
Q 047097 231 --------------------------GTIPPPIFNISSLEVISLSENRFTGSLP-------------------------- 258 (443)
Q Consensus 231 --------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~-------------------------- 258 (443)
..+| .+..+++|++|++++|.+ +.+|
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccC
Confidence 0111 222333444444444443 1333
Q ss_pred --------------------hhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 047097 259 --------------------VDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLS 317 (443)
Q Consensus 259 --------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 317 (443)
.... .+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 1111 3334444444444433 233344444555555555555544433 3445555555
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCC
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE-LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN 396 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 396 (443)
+|++++|.+.+..+ ..+..+++|++|++++|.+++. +|..+..+ ++|+.|++++|++++..|..+..+++|+
T Consensus 428 ~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 428 YLDISYTNTKIDFD------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp EEECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECcCCCCCccch------hhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCC
Confidence 55555555544443 4455666666666666666653 44444443 6666666666666666666666666677
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
.|++++|++++..|..+..+++|+.|++++|+++ .+|..+.++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 7777777666666666666666777777777666 455545544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=324.69 Aligned_cols=292 Identities=28% Similarity=0.454 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--eeeeeeCCCC--CcEEEEEcCCCCCce--ecCccccCCCCCCE
Q 047097 29 NSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRH--QRVTRLDLRNQSIGG--TLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~~--~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~ 102 (443)
.|.++|+.||++||+++.+|. .+.+|..+.+||. |.||.|+... .+|+.|+++++.+++ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998886 6889988889998 9999998654 789999999999998 89999999999999
Q ss_pred EECCC-CcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccc
Q 047097 103 INLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 181 (443)
|++++ |.+.+.+|..|+++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99998999999999999999999999998999999999999999999999998899999999999999999999
Q ss_pred cCCCCCccccCCC-CCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 182 ITGQLPASIGNLS-SLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
+++.+|..+.+++ +|++|++++|.+.+.. ..+..++ |++|++++|.+++..|..+..+++|++|++++|.+.+.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9988999898887 8888888888877544 5666665 88888888888777777777778888888888877755444
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+ ..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 240 -~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 2 35677777777777777777777777777777777777777766664 666777777777765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-41 Score=340.23 Aligned_cols=351 Identities=19% Similarity=0.143 Sum_probs=281.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 67888888888888877888888888888888888888777888888888888888888887666677888888888888
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccC----------------------------------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGN---------------------------------------- 192 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------- 192 (443)
++|.+++ .+|..++++++|++|++++|.+++..+..++.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 8888775 45778888888888888887766544332221
Q ss_pred --------------------------------------------------------------------------------
Q 047097 193 -------------------------------------------------------------------------------- 192 (443)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (443)
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence
Q ss_pred ----------CCCCCEEEccCCcCcccc--------------------ccccCCCcCcEEecccCcCCCC--CChhhhCC
Q 047097 193 ----------LSSLLAFDVRENILWGRI--------------------DSLVQLRNLLLLDIAFNHFSGT--IPPPIFNI 240 (443)
Q Consensus 193 ----------l~~L~~L~l~~n~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~~ 240 (443)
+++|+.|++++|.+...+ ..+..+++|++|++++|.+++. .+..+..+
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 122233333333221111 1223455666666666666544 37778889
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
++|++|++++|.+. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 99999999999987 5664444 89999999999999997777 678999999999999999999999999999999999
Q ss_pred ECCCCcCCCc-CCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTG-TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~-~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
++++|.+.+. .+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..++.+++|+.|
T Consensus 454 ~l~~n~l~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 454 KMAGNSFKDNTLS------NVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ECTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ECCCCcCCCcchH------HhhccCCCCCEEECCCCcCCccChhhhccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 9999999873 44 568899999999999999998878777775 899999999999999889999999999999
Q ss_pred ccccccccccCchhccCCC-CCCeeecccCcCccccC
Q 047097 399 TIDRNQLTGTIPPEIGELK-NLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p 434 (443)
++++|+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999 8898899997 59999999999997665
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=340.31 Aligned_cols=359 Identities=21% Similarity=0.223 Sum_probs=212.3
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777777766667777777777777777777666666777777777777777777555666777777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-cccc-----------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.... ..+.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777664444456777777777777777665 35666777777777777766554432 2222
Q ss_pred --------------------------------------------------------------------------------
Q 047097 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ------------CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhh-------------------c
Q 047097 215 ------------QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG-------------------V 263 (443)
Q Consensus 215 ------------~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------------------~ 263 (443)
.+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 2334444444444444 233333333 4444444444433 2322100 1
Q ss_pred CCCCccEEeCCCCcCcccC--CccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 264 NLPNLRQLSPNGNNFTGSI--PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+. ..+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-----hhhh
Confidence 3455666666666655332 44455566666666666666543333 56666666666666666544331 2345
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc-ccCchhhhcccCCCeeccccccccccCchhccCCCCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS-GTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQ 420 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 420 (443)
.+++|++|++++|.+.+..|..+..+ ++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 56666666666666665555544443 55666666666665 34555666666666666666666655566666666666
Q ss_pred eeecccCcCccccCccccCCCC
Q 047097 421 LLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
.|++++|++++..|..|.++++
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccC
Confidence 6666666666555555555544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=340.66 Aligned_cols=350 Identities=18% Similarity=0.162 Sum_probs=218.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46888999999888888888888999999999999888777788888899999999999888666666888888999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCcCcccc-cccc----------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLV---------------- 214 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~l~---------------- 214 (443)
++|.+++ ..|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.+.. ..+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 8888875 345678888888888888887433444 56778888888888888776543 3333
Q ss_pred --------CCCcCcEEecccCcCCCCC--Chh------------------------------------------------
Q 047097 215 --------QLRNLLLLDIAFNHFSGTI--PPP------------------------------------------------ 236 (443)
Q Consensus 215 --------~l~~L~~L~l~~n~~~~~~--~~~------------------------------------------------ 236 (443)
.+++|++|++++|.+++.. +..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 3566777777777665421 000
Q ss_pred ----------------------------------------hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 237 ----------------------------------------IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 237 ----------------------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
....++|++|++++|.+. .+|..++..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 000123444444444443 455544435666777777777
Q ss_pred cCcccCC---ccccCCCCCCEEecccCcccccCC--ccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEc
Q 047097 277 NFTGSIP---VSLSNASRLEMIEFSRNQFSGRVS--VDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351 (443)
Q Consensus 277 ~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 351 (443)
.+++.+| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.++.. + ..+..+++|++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p------~~~~~~~~L~~L~L 417 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-P------DSCQWPEKMRFLNL 417 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-C------SCCCCCTTCCEEEC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-C------hhhcccccccEEEC
Confidence 6665443 224566666677776666654322 3356666667777766666532 2 23445556666666
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|.++ .+|..+ +++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++
T Consensus 418 s~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 418 SSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 666555 333221 123444444444444321 24455555555555554 4444 2344555555555555555
Q ss_pred ccCccccCCC
Q 047097 432 SIPSSLGNLT 441 (443)
Q Consensus 432 ~~p~~l~~l~ 441 (443)
..|..+.+++
T Consensus 488 ~~~~~~~~l~ 497 (549)
T 2z81_A 488 VPDGIFDRLT 497 (549)
T ss_dssp CCTTGGGGCT
T ss_pred cCHHHHhcCc
Confidence 4444444443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=340.49 Aligned_cols=366 Identities=20% Similarity=0.179 Sum_probs=220.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56888999998888877778888888999999888888877888888888888888888888554556888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccc--cCCCcCcEEecccCcCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSL--VQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l--~~l~~L~~L~l~~n~~~ 230 (443)
++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+.. ..+ ..+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 888888666677888888888888888888777777888888888888888776655 222 23456666666666555
Q ss_pred CCCChh---------------------------------------------------hhCC--CCCcEEEcccCCCCccC
Q 047097 231 GTIPPP---------------------------------------------------IFNI--SSLEVISLSENRFTGSL 257 (443)
Q Consensus 231 ~~~~~~---------------------------------------------------l~~~--~~L~~L~l~~n~~~~~~ 257 (443)
+..|.. +..+ ++|++|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 443332 2222 22555555555555322
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCcc---------------------------------ccCCCCCCEEecccCcccc
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVS---------------------------------LSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~---------------------------------l~~~~~L~~L~l~~n~l~~ 304 (443)
|.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++
T Consensus 265 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 222 225566666666666555443332 3334445555555555555
Q ss_pred cCCccccCCCCCCEEECCCCcCCCcCCCch----------------------hhhhhhcCCCCCCEEEccCCcccccCch
Q 047097 305 RVSVDFSRLKNLSWLNMGINNLGTGTANEL----------------------DFINLLTNCSKLERLYFNRNRFEGELPH 362 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 362 (443)
..+..+..+++|++|++++|.+........ -.+..+..+++|++|++++|.+.+.+|.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 445555555555555555543221100000 0013445566666666666666655553
Q ss_pred hHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc--ccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 363 SVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT--GTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 363 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
..+...++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 22222355666666666555433333333333333433333332 2334444444455555555555544444444433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=348.35 Aligned_cols=330 Identities=20% Similarity=0.244 Sum_probs=269.8
Q ss_pred cCccccCCCCCCEEECCCCcCcc-----------------cCCcccC--CCCCCCEEEccCCcCCCCCCccccCCCCCcE
Q 047097 90 LSPYVGNLSFLRYINLANNGFLG-----------------EIPPQIG--RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 150 (443)
+|..+.++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67789999999999999999998 3888888 9999999999999999999999999999999
Q ss_pred Eeccccc-cee-ccCccccCCC-------CCcEEeccccccCCCCCc--cccCCCCCCEEEccCCcCccccccccCCCcC
Q 047097 151 LFVDTNY-LVG-EIPAAIGGLF-------KLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219 (443)
Q Consensus 151 L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L 219 (443)
|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++++++|+.|++++|.+...+ .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999998 887 7787665554 8999999999998 7888 8889999999999999888444 77888888
Q ss_pred cEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhhhc------------------------------CCCCc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDTGV------------------------------NLPNL 268 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~------------------------------~~~~L 268 (443)
+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. ..++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 88888888887 77777777777 888888888776 66643220 11245
Q ss_pred cEEeCCCCcCcccCCccc-cCCCCCCEEecccCcccccCCccccC--------CCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 269 RQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSR--------LKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.++. .+ ..
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp------~~ 746 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS------DD 746 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC------GG
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch------HH
Confidence 55566666555 344443 47889999999999998 44543322 2399999999999983 33 44
Q ss_pred hc--CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcC------CcCcccCchhhhcccCCCeeccccccccccCch
Q 047097 340 LT--NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGR------NRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP 411 (443)
Q Consensus 340 l~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 411 (443)
+. .+++|+.|+|++|++++ +|..+..+ ++|+.|++++ |.+.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcC-CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 55 89999999999999996 88888876 8999999976 788889999999999999999999999 59999
Q ss_pred hccCCCCCCeeecccCcCccccCccc
Q 047097 412 EIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
.+. ++|+.|+|++|++....+..+
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhc--CCCCEEECCCCCCCccChHHc
Confidence 875 699999999999986665544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=329.18 Aligned_cols=343 Identities=20% Similarity=0.216 Sum_probs=265.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999999888888999999999999999999888899999999999999999998 56666 8999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCC--CEEEccCCcC--cccc-ccccC------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~-~~l~~------------ 215 (443)
++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+.. ..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 467899999999999999999875 456777788 9999999877 2221 22221
Q ss_pred -----------------------------------------------------------------------CCcCcEEec
Q 047097 216 -----------------------------------------------------------------------LRNLLLLDI 224 (443)
Q Consensus 216 -----------------------------------------------------------------------l~~L~~L~l 224 (443)
.++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 125667777
Q ss_pred ccCcCCCCCChhh-----hCCCCCcEEEcccCCCCccCch-hh------------------------hcCCCCccEEeCC
Q 047097 225 AFNHFSGTIPPPI-----FNISSLEVISLSENRFTGSLPV-DT------------------------GVNLPNLRQLSPN 274 (443)
Q Consensus 225 ~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~-~~------------------------~~~~~~L~~L~l~ 274 (443)
++|.+++.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 7777777777766 5566666666665555 3331 10 1367788888888
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccc--cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEcc
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls 352 (443)
+|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+.+..+. ..+..+++|++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCCTTCCEEECC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccCccCCEEECc
Confidence 888887777778888888888888888876 4556677888888888888888763331 246677888888888
Q ss_pred CCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCcc
Q 047097 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++
T Consensus 408 ~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 8888766665442 57888888888888 77877778888888888888888 66665 7788888888888888876
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..+
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=347.34 Aligned_cols=366 Identities=21% Similarity=0.184 Sum_probs=252.8
Q ss_pred CceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccC-CcccCCCCCCCEEEccCCcCCCCCCc
Q 047097 62 CQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRQDMLEGLVLSNNSFSGTIPT 140 (443)
Q Consensus 62 c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 140 (443)
|.|..|.+ ...+++.|++++|.+++..+..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555554 2377999999999999888899999999999999999666555 78899999999999999999988899
Q ss_pred cccCCCCCcEEecccccceeccCcc--ccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCcCcccc-ccccCC
Q 047097 141 NLSRCSNLIELFVDTNYLVGEIPAA--IGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLVQL 216 (443)
Q Consensus 141 ~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l 216 (443)
.|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+.. ..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766654 8899999999999999987655 57899999999999999876654 333333
Q ss_pred --Cc------------------------------CcEEecccCcCCCCCChhhhC-------------------------
Q 047097 217 --RN------------------------------LLLLDIAFNHFSGTIPPPIFN------------------------- 239 (443)
Q Consensus 217 --~~------------------------------L~~L~l~~n~~~~~~~~~l~~------------------------- 239 (443)
++ |+.|++++|.+++..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 34 455555555444333322211
Q ss_pred -------------CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC
Q 047097 240 -------------ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 240 -------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
.++|++|++++|.+.+.. ...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 145666666666655322 233336667777777777777666666777777777777777777666
Q ss_pred CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc------------------Cc-------
Q 047097 307 SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE------------------LP------- 361 (443)
Q Consensus 307 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~------------------~p------- 361 (443)
+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++. +|
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccc
Confidence 6677777777777777777766554 4567778888888888776631 00
Q ss_pred ---------------hhHHhhccCCCEEeCcCCcCcccC------------------------------chhhhcccCCC
Q 047097 362 ---------------HSVANLSSTIKQIAMGRNRISGTI------------------------------PPEIRKLVSLN 396 (443)
Q Consensus 362 ---------------~~~~~~~~~L~~L~l~~n~l~~~~------------------------------~~~l~~l~~L~ 396 (443)
..+.. .++|+.|++++|.+++.. +..+.++++|+
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLR-VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTT-CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred eeecccCccccCchhhhhhc-CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 01112 256666666666665321 12244556666
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCccc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
.|+|++|++++..|..+..+++|+.|++++|++++..|..+
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 66666666665555556666666666666666665444433
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=326.37 Aligned_cols=342 Identities=22% Similarity=0.232 Sum_probs=267.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67899999999999888889999999999999999999888899999999999999999998 67766 8999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCC--CEEEccCCcC--cccc-ccccC------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~-~~l~~------------ 215 (443)
++|.+++ ..|..|+++++|++|++++|.+++. .+..+++| +.|++++|.+ .+.. ..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3467899999999999999998854 34455555 9999999877 3322 22221
Q ss_pred --------------CC-------------------------------------------------------cCcEEeccc
Q 047097 216 --------------LR-------------------------------------------------------NLLLLDIAF 226 (443)
Q Consensus 216 --------------l~-------------------------------------------------------~L~~L~l~~ 226 (443)
++ +|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 12 455566666
Q ss_pred CcCCCCCChhh-----hCC--------------------------CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC
Q 047097 227 NHFSGTIPPPI-----FNI--------------------------SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275 (443)
Q Consensus 227 n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 275 (443)
|.+++.+|..+ ..+ .+|++|++++|.+. ..+ ....+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCC
Confidence 66665555544 222 22444444444443 111 113678899999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcccc--cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccC
Q 047097 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~ 353 (443)
|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++..+. ..+..+++|++|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSS 437 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCC
Confidence 99988788888899999999999998886 3345678899999999999998874442 3567788999999999
Q ss_pred CcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCccc
Q 047097 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 432 (443)
|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 438 n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 438 NMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999876665442 57999999999998 78888889999999999999999 67776 88899999999999999876
Q ss_pred cC
Q 047097 433 IP 434 (443)
Q Consensus 433 ~p 434 (443)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 55
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=328.09 Aligned_cols=351 Identities=20% Similarity=0.221 Sum_probs=270.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 56777777777777766667777777777777777777666666777777777777777776444445667777777777
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCC---------------------------------------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLP--------------------------------------------- 187 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------------------------------- 187 (443)
++|.+++ .+|..|+++++|++|++++|.+++..+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 7776664 356667777777777766665543222
Q ss_pred ----------------------------------------------------------------ccccCCCCCCEEEccC
Q 047097 188 ----------------------------------------------------------------ASIGNLSSLLAFDVRE 203 (443)
Q Consensus 188 ----------------------------------------------------------------~~l~~l~~L~~L~l~~ 203 (443)
..+..+++|+.|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 2233456777777777
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChh--------------------hhCCCCCcEEEcccCCCCccC--chhh
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP--------------------IFNISSLEVISLSENRFTGSL--PVDT 261 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------l~~~~~L~~L~l~~n~~~~~~--~~~~ 261 (443)
|.+...+..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.+.+.. +..+
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 7766555555555 6666666666655 32221 156788999999999887432 4444
Q ss_pred hcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCC-ccccCCCCCCEEECCCCcCCCcCCCchhhhhhh
Q 047097 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 340 (443)
. .+++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+
T Consensus 370 ~-~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~ 441 (570)
T 2z63_A 370 F-GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIF 441 (570)
T ss_dssp H-TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------TTT
T ss_pred c-ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------hhh
Confidence 4 899999999999999854 4448999999999999999987665 468899999999999999988766 678
Q ss_pred cCCCCCCEEEccCCccc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCC
Q 047097 341 TNCSKLERLYFNRNRFE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNL 419 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 419 (443)
..+++|++|++++|.++ +.+|..+..+ ++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcc-cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999999998 5688777775 899999999999998889999999999999999999998778889999999
Q ss_pred CeeecccCcCccccCc
Q 047097 420 QLLNLGGNFLQGSIPS 435 (443)
Q Consensus 420 ~~L~l~~n~l~~~~p~ 435 (443)
+.|++++|++++..|.
T Consensus 521 ~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEecCCcccCCCcc
Confidence 9999999999998874
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=330.18 Aligned_cols=358 Identities=21% Similarity=0.227 Sum_probs=205.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCC--CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEE
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 151 (443)
..++.|++++|.+.+..+..+..++. |++|++++|.+++..+..|+.+++|++|++++|.+.+..|..+.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 35677777777777777777776654 8888888888877777777788888888888888777777777777888888
Q ss_pred eccccccee-----ccCc----cccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc---ccccC--CC
Q 047097 152 FVDTNYLVG-----EIPA----AIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQ--LR 217 (443)
Q Consensus 152 ~l~~n~~~~-----~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~l~~--l~ 217 (443)
++++|...+ .+|. .|..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 877654332 2222 5667777888888877777766777777777777777776543221 12222 24
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
+|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56666666666665555566666666666666666655555444445666666666666655444444444555555555
Q ss_pred ccCccc--ccCCccccCCCCCCEEECCCCcCCCcCC------------------------Cchh--hhhhhcCCCCCCEE
Q 047097 298 SRNQFS--GRVSVDFSRLKNLSWLNMGINNLGTGTA------------------------NELD--FINLLTNCSKLERL 349 (443)
Q Consensus 298 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~--~~~~l~~~~~L~~L 349 (443)
++|.+. +..|..+..+++|++|++++|.+++..+ .... ....+..+++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 555443 2334444445555555555554444333 0000 00123444555555
Q ss_pred EccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc-CCCCCCeeecccCc
Q 047097 350 YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-ELKNLQLLNLGGNF 428 (443)
Q Consensus 350 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~ 428 (443)
++++|+++ .+|...+...++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+. .+++|+.|++++|+
T Consensus 542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 55555554 33332222224455555555555533333344555555555555555544444443 34555555555555
Q ss_pred Cccc
Q 047097 429 LQGS 432 (443)
Q Consensus 429 l~~~ 432 (443)
+...
T Consensus 621 ~~c~ 624 (680)
T 1ziw_A 621 FDCT 624 (680)
T ss_dssp CCBC
T ss_pred cccC
Confidence 5443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=316.91 Aligned_cols=338 Identities=18% Similarity=0.229 Sum_probs=291.9
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCC-CccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI-PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999987555 56799999999999999999988899999999999999
Q ss_pred ccccccCCCCCcc--ccCCCCCCEEEccCCcCcccc-c-cccCCCcCcEEecccCcCCCCCChhhhCC--CCCcEEEccc
Q 047097 177 IFHNHITGQLPAS--IGNLSSLLAFDVRENILWGRI-D-SLVQLRNLLLLDIAFNHFSGTIPPPIFNI--SSLEVISLSE 250 (443)
Q Consensus 177 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~-~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L~~L~l~~ 250 (443)
+++|.+++..+.. +.++++|++|++++|.+.+.. . .+..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999998885 3 38899999999999999998888877765 7899999999
Q ss_pred CCCCccCchhh--------hcCCCCccEEeCCCCcCcccCCccccCC---CCCCEEecccCcccccCC----------cc
Q 047097 251 NRFTGSLPVDT--------GVNLPNLRQLSPNGNNFTGSIPVSLSNA---SRLEMIEFSRNQFSGRVS----------VD 309 (443)
Q Consensus 251 n~~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~----------~~ 309 (443)
|.+.+ ++... ...+++|++|++++|.+++..|..+... ++|+.|++++|...+... ..
T Consensus 190 n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 190 ITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp CBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred Ccccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99883 33221 1145789999999999998777766543 899999999986654321 11
Q ss_pred cc--CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch
Q 047097 310 FS--RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387 (443)
Q Consensus 310 ~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 387 (443)
+. ..++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..|.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGG
T ss_pred cccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChh
Confidence 22 23689999999999988777 678899999999999999997777777775 8999999999999988899
Q ss_pred hhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 388 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
.+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+.++++|
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999998889999999999999999999998776677777654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=319.82 Aligned_cols=343 Identities=20% Similarity=0.214 Sum_probs=282.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCC-CCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG-TIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 152 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..+.++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 689999999999999888999999999999999999997777779999999999999999986 3577899999999999
Q ss_pred cccccceeccC-ccccCCCCCcEEeccccccCCCCCccccC------------------------CCCCCEEEccCCcCc
Q 047097 153 VDTNYLVGEIP-AAIGGLFKLERLFIFHNHITGQLPASIGN------------------------LSSLLAFDVRENILW 207 (443)
Q Consensus 153 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~~~ 207 (443)
+++|.+.+.+| ..+.++++|++|++++|.+++..|..+.+ +++|++|++++|.+.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 99998444554 68999999999999999998777776654 567777777777665
Q ss_pred ccc----cc-----------------------------------------------------------------------
Q 047097 208 GRI----DS----------------------------------------------------------------------- 212 (443)
Q Consensus 208 ~~~----~~----------------------------------------------------------------------- 212 (443)
+.. ..
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 521 00
Q ss_pred ----------------ccCCCcCcEEecccCcCCCCCChhh-hCCCCCcEEEcccCCCCccCchh--hhcCCCCccEEeC
Q 047097 213 ----------------LVQLRNLLLLDIAFNHFSGTIPPPI-FNISSLEVISLSENRFTGSLPVD--TGVNLPNLRQLSP 273 (443)
Q Consensus 213 ----------------l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~l 273 (443)
+....+|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 001134666677777665 577776 47999999999999998766532 1337899999999
Q ss_pred CCCcCcccCC--ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEc
Q 047097 274 NGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351 (443)
Q Consensus 274 ~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 351 (443)
++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++..... ..++|++|++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~---------~~~~L~~L~L 438 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC---------IPQTLEVLDV 438 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT---------SCTTCSEEEC
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch---------hcCCceEEEC
Confidence 9999985432 45889999999999999998 5777888999999999999998754331 1268999999
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.. .. .++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|+.+..+++|+.|++++|++++
T Consensus 439 s~N~l~~~~----~~-l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 439 SNNNLDSFS----LF-LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCSCCC----CC-CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCChhhhc----cc-CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 999999643 23 478999999999998 6776 5689999999999999998888889999999999999999998
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..|
T Consensus 512 ~~~ 514 (549)
T 2z81_A 512 SCP 514 (549)
T ss_dssp CHH
T ss_pred CCc
Confidence 887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=334.33 Aligned_cols=364 Identities=20% Similarity=0.200 Sum_probs=237.9
Q ss_pred CcEEEEEcCCCCCceec-CccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCcc--ccCCCCCcE
Q 047097 74 QRVTRLDLRNQSIGGTL-SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTN--LSRCSNLIE 150 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~ 150 (443)
.+++.|++++|...+.+ +..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45566666666433333 455666666666666666666555666666666666666666665544433 556666666
Q ss_pred EecccccceeccC-ccccCCCCCcEEeccccccCCCCCc--------------------------cccCCCC------CC
Q 047097 151 LFVDTNYLVGEIP-AAIGGLFKLERLFIFHNHITGQLPA--------------------------SIGNLSS------LL 197 (443)
Q Consensus 151 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------~l~~l~~------L~ 197 (443)
|++++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+.+ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 6666666554333 3456666666666666555444333 3333333 67
Q ss_pred EEEccCCcCcccc-cc------------------------------------ccC--CCcCcEEecccCcCCCCCChhhh
Q 047097 198 AFDVRENILWGRI-DS------------------------------------LVQ--LRNLLLLDIAFNHFSGTIPPPIF 238 (443)
Q Consensus 198 ~L~l~~n~~~~~~-~~------------------------------------l~~--l~~L~~L~l~~n~~~~~~~~~l~ 238 (443)
.|++++|.+.+.. .. +.. .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777766443221 11 111 25677888888877766677777
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCE
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSW 318 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 778888888888877744343 3347778888888888777666777777778888888888777666666777777777
Q ss_pred EECCCCcCCCcCC------------------C----------------chhhhhhhcCCCCCCEEEccCCcccccCc---
Q 047097 319 LNMGINNLGTGTA------------------N----------------ELDFINLLTNCSKLERLYFNRNRFEGELP--- 361 (443)
Q Consensus 319 L~l~~n~l~~~~~------------------~----------------~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p--- 361 (443)
|++++|.+++... . .......+..+++|++|++++|.+++..+
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 7777776654221 0 00011223466777777777777653211
Q ss_pred ---------------------------hhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc
Q 047097 362 ---------------------------HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 362 ---------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+.. .++|+.|++++|.+++..|..+.++++|+.|+|++|++++..|..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEG-LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred cccCCccccccCCCCccccccccccchhhhcC-cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 12223 37899999999999988888899999999999999999965555554
Q ss_pred CCCCCCeeecccCcCccccCccccCCC
Q 047097 415 ELKNLQLLNLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (443)
++|+.|++++|++++..|..|.+++
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred --ccccEEECCCCcCCCCChhHhCCcC
Confidence 8999999999999999999887664
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=310.60 Aligned_cols=359 Identities=21% Similarity=0.231 Sum_probs=237.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..+++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|+++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999988899999999999999999999878889999999999999999999666678999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-ccccCCC--------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR-------------- 217 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~-------------- 217 (443)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.. ..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997766789999999999999999975 46788899999999999999876543 2221111
Q ss_pred -------------cCcEEecccCcCC-------------------------------CC---------------------
Q 047097 218 -------------NLLLLDIAFNHFS-------------------------------GT--------------------- 232 (443)
Q Consensus 218 -------------~L~~L~l~~n~~~-------------------------------~~--------------------- 232 (443)
.++.+++.+|... ..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1111222111000 00
Q ss_pred ----------------------------CChhhhCCCCCcEEEcccCCCCccCchh-------------------hhcCC
Q 047097 233 ----------------------------IPPPIFNISSLEVISLSENRFTGSLPVD-------------------TGVNL 265 (443)
Q Consensus 233 ----------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~-------------------~~~~~ 265 (443)
....+.....++.|++.+|.+.+ ++.. ....+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCcccccc
Confidence 00011223345555555554331 1100 00134
Q ss_pred CCccEEeCCCCcCcc-------------------------cCCccccCCCCCCEEecccCcccccCC-ccccCCCCCCEE
Q 047097 266 PNLRQLSPNGNNFTG-------------------------SIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSWL 319 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~-------------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 319 (443)
++|+.+++++|.+.. ..+..+..+++|+.+++.++......+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 566666666665531 112233444555555555554433222 234556666666
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE-LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
+++.|.+.+..+ ..+..+++|++|++++|.+.+. .|..+..+ ++|+.|++++|++++..|..|.++++|++|
T Consensus 451 ~ls~n~l~~~~~------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 451 DISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc------cccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 666666655544 4455666677777776654332 33334443 667777777777776666667777777777
Q ss_pred ccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 399 TIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 777777775556666677777777777777776666666554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=302.91 Aligned_cols=347 Identities=16% Similarity=0.144 Sum_probs=281.5
Q ss_pred EEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
.++.+++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 35556666653 444443 589999999999998888899999999999999999998889999999999999999999
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChh
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
++...+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.... ..+..+++|++|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 98665567899999999999999999888889999999999999999988776 68888999999999999998766667
Q ss_pred hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCC
Q 047097 237 IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+..+++|+.|++++|.+. .++...+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 888999999999999988 4555455588999999999988887777777677789999999999986555678889999
Q ss_pred CEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCC
Q 047097 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN 396 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 396 (443)
+.|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred CeeECCCCcCCccCh------hhccccccCCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 999999999887666 567888899999999999987777766665 7899999999999877667788889999
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.|++++|.+...-+. .+-......+.+.++...-..|..
T Consensus 324 ~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 324 TLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp EEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGG
T ss_pred EEEccCCCccCccch-HhHHhhhhccccCccCceeCCchH
Confidence 999999988743221 111122334555555554444443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=295.77 Aligned_cols=308 Identities=16% Similarity=0.154 Sum_probs=165.6
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
.++.++++++.++...+..+..+++|++|++++|.+++..+.+|+.+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 44555555555554444445556666666666666655444555666666666666666655555555566666666666
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+++
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE---
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc---
Confidence 6665532223345566666666666666555555555566666666666555443 23344555566665555442
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
+...++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 201 --~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 201 --LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp --EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred --cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 122345556666665554 33322 234556666666655532 3455555666666666655555555555555
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccC
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 394 (443)
+|++|++++|.+++... ....+++|++|++++|+++ .+|..+..+ ++|+.|++++|.+++. + +..+++
T Consensus 273 ~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~~-~--~~~~~~ 340 (390)
T 3o6n_A 273 RLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHT 340 (390)
T ss_dssp SCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred cCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCcccee-C--chhhcc
Confidence 66666666555544221 2244555555555555555 444444443 5555555555555532 2 444555
Q ss_pred CCeeccccccccc
Q 047097 395 LNWLTIDRNQLTG 407 (443)
Q Consensus 395 L~~L~l~~n~~~~ 407 (443)
|+.|++++|++.+
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 5555555555553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=300.75 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=274.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999998999999999999999999999888999999999999999999999666667899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999888889999999999999999999888889999999999999999998887 6789999999999999999987
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..+..+++|++|++++|...+.++...+ ...+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 778899999999999999988878887776 5669999999999999544467889999999999999999888888999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 384 (443)
+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++ +|...+...++|+.|++++|.+.+.
T Consensus 271 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH------HHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999998777 678899999999999999995 5544433348999999999998854
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=306.69 Aligned_cols=349 Identities=19% Similarity=0.223 Sum_probs=285.2
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 569999999984 665555 89999999999999877789999999999999999999877999999999999999999
Q ss_pred cceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCccccccccCCCcC--cEEecccCcC--CC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--LLLDIAFNHF--SG 231 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 231 (443)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 998 56665 89999999999999987 478999999999999999999876 455666777 9999999998 66
Q ss_pred CCChhhhCCC----------------------------------------------------------------------
Q 047097 232 TIPPPIFNIS---------------------------------------------------------------------- 241 (443)
Q Consensus 232 ~~~~~l~~~~---------------------------------------------------------------------- 241 (443)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 6665554422
Q ss_pred -------------CCcEEEcccCCCCccCchhhh----cCCCCccEEeCCCCcCcccCC-c-------------------
Q 047097 242 -------------SLEVISLSENRFTGSLPVDTG----VNLPNLRQLSPNGNNFTGSIP-V------------------- 284 (443)
Q Consensus 242 -------------~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~-~------------------- 284 (443)
+|++|++++|.+.|.+|..++ ..+++|+.+++++|.+ .+| .
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 566677777777666776552 2455555555555544 122 0
Q ss_pred -----c-ccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 285 -----S-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 285 -----~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
. ...+++|++|++++|++++..|..+..+++|++|++++|.+++.. .++..+..+++|++|++++|.+++
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCCcCCc
Confidence 0 157889999999999999888888999999999999999987521 233568899999999999999997
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc-c
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS-L 437 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l 437 (443)
.+|...+...++|+.|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 68876444458899999999999988877664 79999999999999 89998889999999999999999 56664 7
Q ss_pred cCCCCC
Q 047097 438 GNLTLL 443 (443)
Q Consensus 438 ~~l~~L 443 (443)
.++++|
T Consensus 465 ~~l~~L 470 (520)
T 2z7x_B 465 DRLTSL 470 (520)
T ss_dssp TTCTTC
T ss_pred ccCCcc
Confidence 776654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=296.42 Aligned_cols=322 Identities=25% Similarity=0.371 Sum_probs=256.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+.+. +. +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 567888888888776544 7788888888888888874433 78888888888888887743 33 778888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ ++ .+..+++|++|+++ +.+.+. ..+.++++|+.|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 8888764 33 47788888888886 344422 2378889999999999987665 45778889999999999888654
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+ +..+++|++|++++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLK-DIGT-L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred c--ccccCCCCEEECCCCCcc-cchh-h-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 4 777899999999999887 4442 3 378999999999999985544 7888999999999999986544 7889
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|+.|++++|.+.+..+ +..+++|++|++++|++++..| +.. .++|+.|++++|.+++. ..+..++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred CccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--hhhccCC
Confidence 999999999998876432 6788999999999999986655 444 48899999999999865 4788999
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999997766 8889999999999999986
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.73 Aligned_cols=332 Identities=27% Similarity=0.377 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 568999999998875 33 488999999999999999854 44 9999999999999999985544 999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +.++++|++|++++|.+.+ ++ .+..+++|++|++.+ .+... ..+..+++|++|++++|.+++.
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCCC-
Confidence 99999854 33 8999999999999999985 33 589999999999974 33332 4488999999999999998753
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
..+..+++|++|++++|.+.+..+ . ..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ +..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--L-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -hhhccCCCCCEEEecCCccccccc--c-cccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 458899999999999999985444 3 368999999999999984 3 457899999999999999987655 8899
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +.. .++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh--hccCc
Confidence 999999999999876432 6789999999999999995443 455 4899999999999997765 78999
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+|+.|++++|++++. ..+..+++|+.|++++|++++..| +.++++|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 999999999999954 468899999999999999998887 6666543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=304.49 Aligned_cols=350 Identities=20% Similarity=0.235 Sum_probs=282.5
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
.+.++++++.+++ +|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999986 555454 8999999999999987778999999999999999999988899999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCccccccccCCCcC--cEEecccCcC--C
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--LLLDIAFNHF--S 230 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 230 (443)
|.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+... .+..+++| ++|++++|.+ +
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence 9998 66766 89999999999999986 3468999999999999999998764 33444445 9999999998 6
Q ss_pred CCCChhhhCCC---------------------------------------------------------------------
Q 047097 231 GTIPPPIFNIS--------------------------------------------------------------------- 241 (443)
Q Consensus 231 ~~~~~~l~~~~--------------------------------------------------------------------- 241 (443)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 66555554432
Q ss_pred ------------CCcEEEcccCCCCccCchhhh----cCC--------------------------CCccEEeCCCCcCc
Q 047097 242 ------------SLEVISLSENRFTGSLPVDTG----VNL--------------------------PNLRQLSPNGNNFT 279 (443)
Q Consensus 242 ------------~L~~L~l~~n~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~n~l~ 279 (443)
+|++|++++|.+.|.+|..++ ..+ .+|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 566666666666656655432 011 23555555555543
Q ss_pred ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
... ....+++|++|++++|.+++..|..+..+++|++|++++|.+++... .+..+..+++|++|++++|.+++.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSCCBSC
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCcCCCc
Confidence 211 11678999999999999999889999999999999999999976431 235678999999999999999976
Q ss_pred CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc-cc
Q 047097 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS-LG 438 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~ 438 (443)
+|...+...++|+.|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 8876555458999999999999987776654 79999999999999 89988889999999999999999 56665 77
Q ss_pred CCCCC
Q 047097 439 NLTLL 443 (443)
Q Consensus 439 ~l~~L 443 (443)
++++|
T Consensus 495 ~l~~L 499 (562)
T 3a79_B 495 RLTSL 499 (562)
T ss_dssp TCTTC
T ss_pred cCCCC
Confidence 76654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=305.26 Aligned_cols=333 Identities=15% Similarity=0.135 Sum_probs=226.7
Q ss_pred CCCCCCCCCCCCc----eeeeeeCCC----------------CCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcC
Q 047097 51 VTSSWNNSMNLCQ----WTGVICGRR----------------HQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 51 ~~~~w~~~~~~c~----~~~~~c~~~----------------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
...+|..+.+||. |..+.|+.. ...++.++++++.+....+..+..+++|++|++++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 4577887777774 554444310 03456677777777666666667777777888877777
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccc
Q 047097 111 LGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASI 190 (443)
Q Consensus 111 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 190 (443)
++..+..|+.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 76666677777777788887777776666667777777778777777774444446777777777777777777667777
Q ss_pred cCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccE
Q 047097 191 GNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 270 (443)
.++++|+.|++++|.+.+.. +..+++|+.|++++|.+++ +...++|++|++++|.+. .++.. ..++|+.
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~ 236 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTI 236 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCE
T ss_pred hcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---cCCCCCE
Confidence 77777777777777766553 4456677777777776653 234456777777777776 44433 2357777
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEE
Q 047097 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLY 350 (443)
Q Consensus 271 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 350 (443)
|++++|.+++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.. ..+..+++|++|+
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~L~~L~ 307 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-------LYGQPIPTLKVLD 307 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-------CSSSCCTTCCEEE
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-------cccccCCCCcEEE
Confidence 7777777764 355677777777777777777777777777777777777777776532 2345567777777
Q ss_pred ccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 351 Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
|++|.++ .+|..+..+ ++|+.|++++|.+++. + +..+++|+.|++++|.+.+.
T Consensus 308 Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-ccCcccccC-CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 7777777 566666554 6777777777777643 2 55666777777777777643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=277.57 Aligned_cols=305 Identities=22% Similarity=0.369 Sum_probs=199.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++. + +.+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 3444555555555444 222 24445555555555555442 222 4455555555555555442 2 235555555555
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+.+. +. +..+++|+.|++++|........+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-
Confidence 5555555522 22 555556666666655444444446666667777777776653322 667777788888777776
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.++. ...+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC------
Confidence 4443 2367788888888887774333 6777888888888888875443 77888888888888877653
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 415 (443)
..+..+++|++|++++|.+++ ++ .+.. .++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +..
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~-~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISD-IS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred --hhHhcCCCcCEEEccCCccCC-Ch-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 346778889999999988884 33 3444 3789999999999988888889999999999999999985545 788
Q ss_pred CCCCCeeecccCcCc
Q 047097 416 LKNLQLLNLGGNFLQ 430 (443)
Q Consensus 416 l~~L~~L~l~~n~l~ 430 (443)
+++|+.|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999886
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=281.46 Aligned_cols=352 Identities=15% Similarity=0.132 Sum_probs=282.3
Q ss_pred CCCCCCCCCCCc-eeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEcc
Q 047097 52 TSSWNNSMNLCQ-WTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLS 130 (443)
Q Consensus 52 ~~~w~~~~~~c~-~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 130 (443)
.++|..+.+||. |.+..|.... +.+............-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 456877777775 5555554221 1122221111222223457899999999999985555568899999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc
Q 047097 131 NNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 210 (443)
+|.+.+..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+.++++|++|++++|.+....
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999777789999999999999999999887888999999999999999999544445699999999999999998877
Q ss_pred -ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCC
Q 047097 211 -DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 211 -~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 289 (443)
..+..+++|++|++++|.+++. .+..+++|++|++++|.+. .++ ..++|++|++++|.+... |.. ..
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~ 225 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV-RGP--VN 225 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE-ECC--CC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec-ccc--cc
Confidence 6789999999999999999854 3667899999999999887 332 457899999999999844 432 35
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 369 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 369 (443)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++ .+|..+..+ +
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~ 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLV-ALNLYGQPI-P 295 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES------GGGTTCSSCCEEECCSSCCC-EEECSSSCC-T
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh------hHccccccCCEEECCCCcCc-ccCcccCCC-C
Confidence 7999999999999864 568899999999999999988766 67889999999999999998 456555443 8
Q ss_pred CCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 370 TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
+|+.|++++|.++ .+|..+..+++|+.|++++|+++ .++ +..+++|+.|++++|++.+...
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccchhH
Confidence 8999999999998 67888999999999999999998 444 6788999999999999986543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=283.63 Aligned_cols=331 Identities=18% Similarity=0.171 Sum_probs=263.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+++. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 6789999999999875 4 689999999999999999864 4 88999999999999999864 4 889999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ ++ ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.. .+..+++|++|++++|.+++ +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-e
Confidence 9999985 44 88999999999999999864 3 888999999999999554444 57788999999999999986 4
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| +..+++|++|++++|.+++ ++ + ..+++|++|++++|++++ +| +..+++|++|++++|++++..+ ..+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l 253 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STL 253 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred c--cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence 4 7889999999999999984 43 3 378999999999999996 56 7889999999999999987643 456
Q ss_pred CCCCEEECCCCcCCCcCCCchhhh--hhhcCCCCCCEEEccCCcccccCchhH--------HhhccCCCEEeCcCCcCcc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFI--NLLTNCSKLERLYFNRNRFEGELPHSV--------ANLSSTIKQIAMGRNRISG 383 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~--~~l~~~~~L~~L~Ls~n~l~~~~p~~~--------~~~~~~L~~L~l~~n~l~~ 383 (443)
++|+.|+++.|++.......-.+. .....+++|+.|++++|...+.+|... .. .++|+.|++++|++++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCCCSC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCcccc
Confidence 666666666655543322110000 114577899999999998777766422 22 3689999999999997
Q ss_pred cCchhhhcccCCCeeccccccccccCchhcc-------------CCCCCCeeecccCcCccccCcccc
Q 047097 384 TIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-------------ELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-------------~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
. + +..+++|+.|++++|++++ ++. +. .+..|+.+++++|+++|.+|..+.
T Consensus 333 l-~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 333 L-D--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp C-C--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred c-c--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 3 3 8889999999999999985 322 11 234678899999999999998654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=290.49 Aligned_cols=313 Identities=16% Similarity=0.174 Sum_probs=273.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++++.+++++|.+....+..++.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56789999999999986666678899999999999999998888899999999999999999998888889999999999
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
++++|.+++..+..++++++|++|++++|.+.+.+ ..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 99999999655556799999999999999998887 5789999999999999999864 2567899999999999887
Q ss_pred ccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCch
Q 047097 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++ ..++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..+
T Consensus 206 -~l~-----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~--- 271 (597)
T 3oja_B 206 -TLA-----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY--- 271 (597)
T ss_dssp -EEE-----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES---
T ss_pred -ccc-----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH---
Confidence 332 467899999999999843 3322 3689999999999986 4668999999999999999998776
Q ss_pred hhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc
Q 047097 335 DFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 335 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|.+++ +|..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| +.
T Consensus 272 ---~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~ 342 (597)
T 3oja_B 272 ---HPFVKMQRLERLYISNNRLVA-LNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS 342 (597)
T ss_dssp ---GGGTTCSSCCEEECTTSCCCE-EECSSSCC-TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred ---HHhcCccCCCEEECCCCCCCC-CCcccccC-CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hh
Confidence 678899999999999999994 56655544 88999999999999 788889999999999999999984 44 67
Q ss_pred CCCCCCeeecccCcCccccC
Q 047097 415 ELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p 434 (443)
.+++|+.|++++|++.+..+
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hcCCCCEEEeeCCCCCChhH
Confidence 78999999999999986543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=266.11 Aligned_cols=303 Identities=23% Similarity=0.371 Sum_probs=258.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 6789999999998754 3 48899999999999999984 444 9999999999999999984 4 46899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|++|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~- 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI- 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC-
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc-
Confidence 99999843 43 899999999999999766444 458999999999999998876655 78899999999999999844
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+. +..+++|+++++++|.+.+ ++. ...+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred cc-ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 33 8899999999999999984 443 33789999999999999854 33 88999999999999999864 458899
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|.+++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp TTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GGGCT
T ss_pred CCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC--hhhhh
Confidence 9999999999998764 347788999999999999998878777775 899999999999997655 88999
Q ss_pred CCCeecccccccc
Q 047097 394 SLNWLTIDRNQLT 406 (443)
Q Consensus 394 ~L~~L~l~~n~~~ 406 (443)
+|+.|++++|.|+
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999886
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=277.45 Aligned_cols=304 Identities=20% Similarity=0.226 Sum_probs=257.3
Q ss_pred CccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCC
Q 047097 91 SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF 170 (443)
Q Consensus 91 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 170 (443)
+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3467889999999999999986 45 69999999999999999996 44 88999999999999999864 3 89999
Q ss_pred CCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEccc
Q 047097 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 250 (443)
+|++|++++|.+++ +| ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999999996 44 89999999999999999886 4788999999999999766565 478899999999999
Q ss_pred CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcC
Q 047097 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 251 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .+| + ..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++..
T Consensus 180 n~l~-~l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKIT-ELD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCC-CCC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cccc-eec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 9998 466 3 3789999999999999954 38899999999999999997 45 789999999999999998865
Q ss_pred CCchhhhhhhcCCC-------CCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch--------hhhcccCC
Q 047097 331 ANELDFINLLTNCS-------KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP--------EIRKLVSL 395 (443)
Q Consensus 331 ~~~~~~~~~l~~~~-------~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~--------~l~~l~~L 395 (443)
+ ..+..+. +|+.|++++|.+.+.+|. .. +++|+.|++++|...+.+|. .+.++++|
T Consensus 250 ~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 250 V------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp C------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred H------HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cc-cccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 4 2233332 566677777777667763 33 47899999999987776664 25677899
Q ss_pred CeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 396 NWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 396 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+.|++++|++++ ++ +..+++|+.|++++|++++
T Consensus 321 ~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 321 VYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 999999999996 43 8899999999999999997
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=285.89 Aligned_cols=352 Identities=19% Similarity=0.175 Sum_probs=269.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|+|++|.+++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 67999999999999988889999999999999999999777778999999999999999999776778999999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCC---------------------------CCEEEccCCc
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS---------------------------LLAFDVRENI 205 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---------------------------L~~L~l~~n~ 205 (443)
++|.++. ..|..+..+++|++|++++|.+++..+..+..+.+ ++.+++.+|.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999875 46778899999999999999887655544332211 1122222211
Q ss_pred Ccc-----------------------------------------------------------c-----------------
Q 047097 206 LWG-----------------------------------------------------------R----------------- 209 (443)
Q Consensus 206 ~~~-----------------------------------------------------------~----------------- 209 (443)
... .
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000 0
Q ss_pred -----cccccCCCcCcEEecccCcCCCCCC-------------------hhhhCCCCCcEEEcccCCCCc--cCchh---
Q 047097 210 -----IDSLVQLRNLLLLDIAFNHFSGTIP-------------------PPIFNISSLEVISLSENRFTG--SLPVD--- 260 (443)
Q Consensus 210 -----~~~l~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~~~~L~~L~l~~n~~~~--~~~~~--- 260 (443)
...+.....++.|++.+|.+.+..+ .....+++|+.+++++|.+.. ..+..
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 0011122345555555554432211 112345667777777776531 11111
Q ss_pred -------------------hhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEE
Q 047097 261 -------------------TGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLN 320 (443)
Q Consensus 261 -------------------~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 320 (443)
.+..+++|+.+++.+++.....+ ..+..+++++.++++.|.+.+..+..+..++.++.|+
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 11256777778887776654443 4577899999999999999998899999999999999
Q ss_pred CCCCcCCC-cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeec
Q 047097 321 MGINNLGT-GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLT 399 (443)
Q Consensus 321 l~~n~l~~-~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 399 (443)
+++|.+.. ..+ ..+..+++|++|+|++|++++..|..+..+ ++|+.|++++|++++..+..+.++++|+.|+
T Consensus 476 Ls~N~~~~~~~~------~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 476 MAGNSFQENFLP------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp CTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhcccccccCc------hhhhhccccCEEECCCCccCCcChHHHcCC-CCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 99997543 334 567889999999999999997777777775 8999999999999988888999999999999
Q ss_pred cccccccccCchhccCC-CCCCeeecccCcCccc
Q 047097 400 IDRNQLTGTIPPEIGEL-KNLQLLNLGGNFLQGS 432 (443)
Q Consensus 400 l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~~ 432 (443)
+++|++++..|+.+..+ ++|+.|++++|++...
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999998889999888 6899999999999743
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=278.41 Aligned_cols=335 Identities=23% Similarity=0.279 Sum_probs=154.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCC-------------CEEEccCCcCCC----
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDML-------------EGLVLSNNSFSG---- 136 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~---- 136 (443)
.+++.|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4566677777776 5666667777777777777766666666666655432 455555554442
Q ss_pred ---------------CCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 137 ---------------TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 137 ---------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 13322 2344555555544442 1111 1466777777777664 55 4677777777777
Q ss_pred cCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCccc
Q 047097 202 RENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 281 (443)
++|.+.+.+... .+|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. ..++|++|++++|.++ .
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-S
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCC-c
Confidence 777666544322 366666666666664 44 4666666666666666665 3432 1245666666666655 4
Q ss_pred CCccccCCCCCCEEecccCcccccCCccc-----------------cCCCCCCEEECCCCcCCCcC--CCchhh------
Q 047097 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDF-----------------SRLKNLSWLNMGINNLGTGT--ANELDF------ 336 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~--~~~~~~------ 336 (443)
+|. +..+++|++|++++|++++ +|... ...++|++|++++|.+++.. +.....
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred ccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 442 5556666666666665553 22110 01234555555555444311 100000
Q ss_pred -hhhhcCC-CCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccc--cCchh
Q 047097 337 -INLLTNC-SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG--TIPPE 412 (443)
Q Consensus 337 -~~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~ 412 (443)
...+... ++|++|++++|++++ +|.. .++|+.|++++|+++ .+|. .+++|+.|++++|++++ .+|..
T Consensus 308 ~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 308 EIRSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCSEECCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred cCCcccCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 0001122 356666666666553 4432 255677777777666 4554 35677777777777776 56666
Q ss_pred ccCC-------------CCCCeeecccCcCcc--ccCccccCC
Q 047097 413 IGEL-------------KNLQLLNLGGNFLQG--SIPSSLGNL 440 (443)
Q Consensus 413 ~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l 440 (443)
+..+ ++|+.|++++|++++ .+|.++.++
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCEEECCC-----------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 6666 667777777777777 677666655
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=271.14 Aligned_cols=314 Identities=25% Similarity=0.283 Sum_probs=158.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456667777776665 3322 2556666666665553 2211 1456666666666653 44 3566666666666
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ +|..+ .+|++|++++|.+++ +| .++++++|+.|++++|.+.+.+... ++|++|++++|.++ .+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cc
Confidence 6666553 33322 356666666666553 34 4555666666666666555433211 35555555555555 34
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccc-----------------cCCCCCCEEe
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL-----------------SNASRLEMIE 296 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----------------~~~~~L~~L~ 296 (443)
| .+..+++|++|++++|.+. .+|. .+++|++|++++|.+++ +|... ...++|++|+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 4 2555555555555555555 3332 23455555555555542 33221 0013445555
Q ss_pred cccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEe
Q 047097 297 FSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIA 375 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 375 (443)
+++|++++ +..+ ++|++|++++|.+++... .+++|++|++++|.++ .+|. ..++|+.|+
T Consensus 304 l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~lp~----------~~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~ 363 (454)
T 1jl5_A 304 ASSNEIRS-----LCDLPPSLEELNVSNNKLIELPA----------LPPRLERLIASFNHLA-EVPE----LPQNLKQLH 363 (454)
T ss_dssp CCSSCCSE-----ECCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-CCCC----CCTTCCEEE
T ss_pred CcCCcCCc-----ccCCcCcCCEEECCCCccccccc----------cCCcCCEEECCCCccc-cccc----hhhhccEEE
Confidence 55555443 1223 478888888888876322 2589999999999999 6776 247899999
Q ss_pred CcCCcCcc--cCchhhhcc-------------cCCCeeccccccccc--cCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 376 MGRNRISG--TIPPEIRKL-------------VSLNWLTIDRNQLTG--TIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 376 l~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
+++|++++ .+|.++..+ ++|+.|++++|++++ .+|. .++.|.+.+|.+.+.+|.+..
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC---------------------------------------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence 99999998 788888888 899999999999996 5554 367788999999988887655
Q ss_pred CC
Q 047097 439 NL 440 (443)
Q Consensus 439 ~l 440 (443)
..
T Consensus 438 ~~ 439 (454)
T 1jl5_A 438 TT 439 (454)
T ss_dssp --
T ss_pred Hh
Confidence 43
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=272.36 Aligned_cols=270 Identities=20% Similarity=0.278 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCCCceeeeeeCC--------CCCcEEEEEcCCCCCceecCccc
Q 047097 28 ANSNETDRLALLAIKSQLH-DPLGVTSSW----NNSMNLCQWTGVICGR--------RHQRVTRLDLRNQSIGGTLSPYV 94 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~~~~~~c~~--------~~~~v~~L~l~~~~l~~~~~~~~ 94 (443)
..+..+++.||++||..+. ++..+...| ....++|.|.|+.|.. ...+|+.|+++++.++ .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3456778999999999884 776677889 4567899999999942 2367888888888887 666778
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccC------
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG------ 168 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------ 168 (443)
.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88888888888888888 78888888888888888888888 77888888888888888888777777766543
Q ss_pred ---CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 169 ---LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 169 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
+++|++|++++|.++ .+|..+.++++|++|++++|.+.+ +|..+..+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------------------------l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------------------------LGPAIHHLPKLEE 233 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------------------------CCGGGGGCTTCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------------------------CchhhccCCCCCE
Confidence 555555555555555 445555555555555555444444 3444555555555
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 55555555545544433 45555555555555555555555555666666666665555566666666666666665444
Q ss_pred C
Q 047097 326 L 326 (443)
Q Consensus 326 l 326 (443)
+
T Consensus 313 ~ 313 (328)
T 4fcg_A 313 Q 313 (328)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=297.06 Aligned_cols=353 Identities=16% Similarity=0.170 Sum_probs=159.1
Q ss_pred cEEEEEcCCCCCceecCcc-ccCCCCCCEEECCCCcCcc----cCCcccCCCCCCCEEEccCCcCCCCCCccc-cCCC--
Q 047097 75 RVTRLDLRNQSIGGTLSPY-VGNLSFLRYINLANNGFLG----EIPPQIGRQDMLEGLVLSNNSFSGTIPTNL-SRCS-- 146 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~-~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~-- 146 (443)
+++.|+++++.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555555555554332222 4455555555555555543 233444555555555555555543222222 1222
Q ss_pred --CCcEEeccccccee----ccCccccCCCCCcEEeccccccCCCCCcccc-----CCCCCCEEEccCCcCcccc-----
Q 047097 147 --NLIELFVDTNYLVG----EIPAAIGGLFKLERLFIFHNHITGQLPASIG-----NLSSLLAFDVRENILWGRI----- 210 (443)
Q Consensus 147 --~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----- 210 (443)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 45555555555542 2344555555555555555554432222111 1334555555555544322
Q ss_pred ccccCCCcCcEEecccCcCCCCCChhhh-----CCCCCcEEEcccCCCCcc----CchhhhcCCCCccEEeCCCCcCccc
Q 047097 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-----NISSLEVISLSENRFTGS----LPVDTGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~ 281 (443)
..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+++.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChH
Confidence 2333445555555555554432222221 134555555555555421 222222 445555555555554422
Q ss_pred C-----CccccCCCCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc-CCCCCCEEEc
Q 047097 282 I-----PVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT-NCSKLERLYF 351 (443)
Q Consensus 282 ~-----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~L 351 (443)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.... .+...+. ..++|++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeEc
Confidence 1 11122345555555555555432 233344455555555555544322110 0111111 1235555555
Q ss_pred cCCccccc----CchhHHhhccCCCEEeCcCCcCcccCchhhhc-----ccCCCeeccccccccc----cCchhccCCCC
Q 047097 352 NRNRFEGE----LPHSVANLSSTIKQIAMGRNRISGTIPPEIRK-----LVSLNWLTIDRNQLTG----TIPPEIGELKN 418 (443)
Q Consensus 352 s~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~----~~p~~~~~l~~ 418 (443)
++|.+++. ++..+... ++|+.|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred CCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 55555433 22222222 45555555555555433333322 3455555555555553 44555555555
Q ss_pred CCeeecccCcCcc
Q 047097 419 LQLLNLGGNFLQG 431 (443)
Q Consensus 419 L~~L~l~~n~l~~ 431 (443)
|+.|++++|++++
T Consensus 400 L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 400 LRELDLSNNCLGD 412 (461)
T ss_dssp CCEEECCSSSCCH
T ss_pred ccEEECCCCCCCH
Confidence 5555555555543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=256.94 Aligned_cols=287 Identities=20% Similarity=0.289 Sum_probs=173.0
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 178 (443)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5778888877776 5565443 567778888777776556677777777777777777776667777777777777777
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCC--CCChhhhCCCCCcEEEcccCCCCc
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSG--TIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+...+ ..+..+++|+.|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------------- 172 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--------------- 172 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------------
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---------------
Confidence 77776 4444433 45555555555554444 234444455555555444431 223333333
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
+|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 173 -----------~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~---- 234 (332)
T 2ft3_A 173 -----------KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN---- 234 (332)
T ss_dssp -----------CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----
T ss_pred -----------ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----
Confidence 45555555555542 333322 455556666665555555555556666666666666555444
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc------ccCCCeecccccccc--c
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK------LVSLNWLTIDRNQLT--G 407 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~ 407 (443)
..+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|.+++..+..+.. ..+|+.|++++|.+. +
T Consensus 235 --~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 235 --GSLSFLPTLRELHLDNNKLS-RVPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp --TGGGGCTTCCEEECCSSCCC-BCCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred --hHhhCCCCCCEEECCCCcCe-ecChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 34555566666666666666 556555553 56666666666666544444433 356788888888876 5
Q ss_pred cCchhccCCCCCCeeecccCc
Q 047097 408 TIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..|..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 567778888888888888874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=254.14 Aligned_cols=288 Identities=20% Similarity=0.265 Sum_probs=179.0
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 178 (443)
++++++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888876 5565443 578888888888886666678888888888888888887667788888888888888
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCC--CCChhhhCCCCCcEEEcccCCCCc
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSG--TIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+.... ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 88877 4555443 56777777777666555 456666666666666666642 44555566666666666666665
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|... .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. +
T Consensus 185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p---- 256 (330)
T 1xku_A 185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P---- 256 (330)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----
T ss_pred cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-C----
Confidence 444432 25555666666655554455555555555555555555554444455555555555555555421 1
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhh------cccCCCeeccccccccc--
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR------KLVSLNWLTIDRNQLTG-- 407 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------~l~~L~~L~l~~n~~~~-- 407 (443)
..+..+++|++|++++|+++ +..+..++ ..++++.|++++|.+..
T Consensus 257 --~~l~~l~~L~~L~l~~N~i~-------------------------~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 257 --GGLADHKYIQVVYLHNNNIS-------------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp --TTTTTCSSCCEEECCSSCCC-------------------------CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred --hhhccCCCcCEEECCCCcCC-------------------------ccChhhcCCcccccccccccceEeecCcccccc
Confidence 22344455555555555554 33222222 23567777777777652
Q ss_pred cCchhccCCCCCCeeecccCc
Q 047097 408 TIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..|..++.++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 445667777778888887774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=255.59 Aligned_cols=293 Identities=20% Similarity=0.217 Sum_probs=210.0
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3567888888886 455544 3689999999999997778899999999999999999998779999999999999999
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcc--cc-ccccCCCcCcEEecccCcCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLLLLDIAFNHFSG 231 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~l~~l~~L~~L~l~~n~~~~ 231 (443)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. .. ..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6666555 899999999999997766779999999999999999864 22 566666 89999999999884
Q ss_pred CCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc
Q 047097 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 232 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
+|..+. ++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 554443 577777777777763 33233336667777777777776555556666667777777776666 4555566
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc--ccCchhh
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS--GTIPPEI 389 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~l 389 (443)
.+++|++|++++|.+++..+. .+.... +......|+.|++++|.+. +..|..+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~------~~~~~~-------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVN------DFCPVG-------------------FGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT------SSSCSS-------------------CCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred cCccCCEEECCCCCCCccChh------Hccccc-------------------cccccccccceEeecCcccccccCcccc
Confidence 666666666666666554431 111100 0000134666666666655 4455667
Q ss_pred hcccCCCeecccccc
Q 047097 390 RKLVSLNWLTIDRNQ 404 (443)
Q Consensus 390 ~~l~~L~~L~l~~n~ 404 (443)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 777777777777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=251.83 Aligned_cols=271 Identities=19% Similarity=0.218 Sum_probs=221.4
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
++.++++++.++. +|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4567777777763 444443 6899999999999977777899999999999999999988899999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcc--cc-ccccCCCcCcEEecccCcCCCC
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. .. ..+..+++|++|++++|.++ .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 9998 5666554 799999999999998777789999999999999999864 22 67889999999999999998 4
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+|..+. ++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555443 899999999999985445444 48999999999999999877778999999999999999998 67778999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++|++|++++|.+++.....+.-.......+.++.+++++|++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999999999999998776532211111112345555566555553
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=256.60 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=143.9
Q ss_pred CCCEEEccCCcCCC--CCCccccCCCCCcEEeccc-ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 123 MLEGLVLSNNSFSG--TIPTNLSRCSNLIELFVDT-NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 123 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---------- 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---------- 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----------
Confidence 45556666665555 4555555555555555553 5555555555555555555555555544444433
Q ss_pred EccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCC-CccEEeCCCCcC
Q 047097 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP-NLRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l 278 (443)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. .++ +|++|++++|.+
T Consensus 121 -------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 121 -------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL 186 (313)
T ss_dssp -------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEE
T ss_pred -------------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCee
Confidence 34445555555555566556666666666677777776666666665555 444 666666666666
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++..+ .+..+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~l--------------- 243 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------KVGLS--------------- 243 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------GCCCC---------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-------ccccc---------------
Confidence 666666666554 6666666666665555555555555555555555543222 12233
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
++|+.|++++|.+++.+|..+..+++|+.|++++|+++|.+|+. ..+++|+.+++++|+
T Consensus 244 ----------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 ----------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ----------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 45555566666665556666666666666666666666666654 556666666666665
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-34 Score=283.88 Aligned_cols=361 Identities=15% Similarity=0.093 Sum_probs=283.1
Q ss_pred CcEEEEEcCCCCCcee----cCccccCCCCCCEEECCCCcCcccCCccc-CCCC----CCCEEEccCCcCCC----CCCc
Q 047097 74 QRVTRLDLRNQSIGGT----LSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQD----MLEGLVLSNNSFSG----TIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~----~L~~L~l~~n~l~~----~~~~ 140 (443)
++++.|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+.+ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 5688999999998753 45678889999999999999986444333 2344 79999999999984 4588
Q ss_pred cccCCCCCcEEecccccceeccCcccc-----CCCCCcEEeccccccCCCC----CccccCCCCCCEEEccCCcCcccc-
Q 047097 141 NLSRCSNLIELFVDTNYLVGEIPAAIG-----GLFKLERLFIFHNHITGQL----PASIGNLSSLLAFDVRENILWGRI- 210 (443)
Q Consensus 141 ~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~- 210 (443)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 889999999999999998755444332 3568999999999988643 556677899999999999987654
Q ss_pred cccc-----CCCcCcEEecccCcCCCC----CChhhhCCCCCcEEEcccCCCCccC----chhhhcCCCCccEEeCCCCc
Q 047097 211 DSLV-----QLRNLLLLDIAFNHFSGT----IPPPIFNISSLEVISLSENRFTGSL----PVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 211 ~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~ 277 (443)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. .......+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2332 366999999999999864 5677788999999999999987432 23333358999999999999
Q ss_pred Cccc----CCccccCCCCCCEEecccCcccccCCcccc-----CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 278 FTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDFS-----RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 278 l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++... ..++..+..+++|++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC--SHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH--HHHHHHHhhCCCccE
Confidence 9854 577778899999999999999865544443 33799999999999876432 234467788899999
Q ss_pred EEccCCcccccCchhHHhh----ccCCCEEeCcCCcCcc----cCchhhhcccCCCeeccccccccccCchhcc-----C
Q 047097 349 LYFNRNRFEGELPHSVANL----SSTIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-----E 415 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~ 415 (443)
|++++|.+++..+..+... .++|+.|++++|.+++ .+|..+..+++|++|++++|++++.....+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 9999999987766666542 3689999999999997 7888899999999999999999864333222 2
Q ss_pred CCCCCeeecccCcCccccCcc
Q 047097 416 LKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~~ 436 (443)
..+|+.|.+.++.+....++.
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHHH
T ss_pred CcchhheeecccccCHHHHHH
Confidence 456888888888877655543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=245.34 Aligned_cols=286 Identities=16% Similarity=0.173 Sum_probs=206.9
Q ss_pred CCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 047097 55 WNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134 (443)
Q Consensus 55 w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 134 (443)
|......|.|.++ | +.+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c----------~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-C----------KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-E----------ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-e----------eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4444566777655 4 445666653 444443 4899999999999876666899999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCc-Ccccc-c
Q 047097 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENI-LWGRI-D 211 (443)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~-~ 211 (443)
.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++|. +.... .
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 87777889999999999999999985544558899999999999999884333 378889999999999884 55554 6
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccc---cC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL---SN 288 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~ 288 (443)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|......+++|++|++++|.+++..+..+ ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 7888899999999999998888888888999999999999886 6776666568889999999998885444333 23
Q ss_pred CCCCCEEecccCcccc----cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 289 ASRLEMIEFSRNQFSG----RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
...++.++++++.+.+ .+|..+..+++|++|++++|.++.... ..+..+++|++|++++|++.+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcCC
Confidence 4556666676666654 234445666666666666666654332 234556666666666666664433
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=233.18 Aligned_cols=263 Identities=23% Similarity=0.260 Sum_probs=157.8
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCC--CCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGT--IPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
+++++|++++|.++...+..|+++++|++|++++|.+... .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5789999999988854445578888899999988887732 2556667788888888888776 456667777777777
Q ss_pred eccccccCCCCC-ccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 176 FIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
++++|.+++..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSL-----------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECTTSEEESSTTTTTTTTC-----------------------TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCcccccccchhhhhc-----------------------cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 777777664332 234444 44444455555444444455555566666666666555
Q ss_pred c-cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 255 G-SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 255 ~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 164 ~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 240 (306)
T 2z66_A 164 ENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-- 240 (306)
T ss_dssp GGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS--
T ss_pred cccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH--
Confidence 3 2333222 55666666666666665555566666666666666666665555556666666666666666665544
Q ss_pred hhhhhhhcCC-CCCCEEEccCCcccccCch-hHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 334 LDFINLLTNC-SKLERLYFNRNRFEGELPH-SVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 334 ~~~~~~l~~~-~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
..+..+ ++|++|++++|++++.-+. ++..+....+.+.+..+.+....|..+.+
T Consensus 241 ----~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 241 ----QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp ----SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred ----HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 334444 3666666666666543221 12222223333444444555455544443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=234.07 Aligned_cols=281 Identities=17% Similarity=0.185 Sum_probs=182.9
Q ss_pred CEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceec--cCccccCCCCCcEEecc
Q 047097 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGE--IPAAIGGLFKLERLFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 178 (443)
+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 4444332 4566666666666633333355666666666666655421 13334444444444444
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccC
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
+| .+...+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 87 ~n------------------------~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FN------------------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SC------------------------SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CC------------------------ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 44 444333445556667777777776664433 46777888888998888887544
Q ss_pred chhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 336 (443)
+.. +..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 143 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 216 (306)
T 2z66_A 143 NGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----- 216 (306)
T ss_dssp TTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----
T ss_pred hhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----
Confidence 443 3378888888888888875 567778888888888888888887777778888888888888888876655
Q ss_pred hhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC--chhhhcccCCCeeccccccccccCchhcc
Q 047097 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI--PPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 337 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++..|..+...+++|+.|++++|.+++.- ......+...+.+.+..+.+....|+.+.
T Consensus 217 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 217 -FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred -hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 456777888888888888887777666665457888888888776531 11223344455566666666666666655
Q ss_pred C
Q 047097 415 E 415 (443)
Q Consensus 415 ~ 415 (443)
+
T Consensus 296 g 296 (306)
T 2z66_A 296 G 296 (306)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-30 Score=241.59 Aligned_cols=282 Identities=20% Similarity=0.198 Sum_probs=173.8
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 120 RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 120 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
.++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4555667788888888 6676554 588889999888886666678888888888888888887667777777777777
Q ss_pred EccCCcCcccc-ccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCC-CCccCchhhhcCCCCccEEeCCCC
Q 047097 200 DVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENR-FTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 200 ~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
++++|.+...+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +. .++...+..+++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCC
Confidence 77777776655 336666677777777766663222 245566666666666663 33 343333335566666666666
Q ss_pred cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcc
Q 047097 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRF 356 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 356 (443)
.+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++...... ......
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~~~~------------- 248 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL---STGETN------------- 248 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CC-------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---cccccc-------------
Confidence 6655555555556666666666665543322223345555555555555544332111 011122
Q ss_pred cccCchhHHhhccCCCEEeCcCCcCcc----cCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCcc
Q 047097 357 EGELPHSVANLSSTIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 357 ~~~~p~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+.++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+
T Consensus 249 ------------~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 249 ------------SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ------------CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------------chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 334455555554443 35566667777777777777776 55554 3667777777777777766
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=224.83 Aligned_cols=267 Identities=21% Similarity=0.243 Sum_probs=163.3
Q ss_pred CEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecccc
Q 047097 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 180 (443)
++++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344322 345666666666666544455666666666666666666555555666666666666665
Q ss_pred c-cCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 181 H-ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 181 ~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
. +....|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+. .++.
T Consensus 91 ~~l~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFH-----------------------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146 (285)
T ss_dssp TTCCCCCTTTTT-----------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCccccCHHHhc-----------------------CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCH
Confidence 4 4433344444 4455555555555555555555666677777777777766 4444
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ ..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HH
Confidence 434466777777777777775555557777777888888887777777777777788888888877776544 45
Q ss_pred hcCCCCCCEEEccCCcccccCch-hHHhhccCCCEEeCcCCcCcccCchhhhc--ccCCCeeccccc
Q 047097 340 LTNCSKLERLYFNRNRFEGELPH-SVANLSSTIKQIAMGRNRISGTIPPEIRK--LVSLNWLTIDRN 403 (443)
Q Consensus 340 l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n 403 (443)
+..+++|++|++++|++....+. ++.. .++.+..+.+.+.+..|..+.+ +..++..++.+|
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCcccCEEeccCCCccCCCCcHHHHH---HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 67777888888888877644332 1212 2344445566666666665543 344444444444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=231.00 Aligned_cols=236 Identities=18% Similarity=0.217 Sum_probs=211.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
..+++++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888999999999999999999 88999999999999999999998 788899999999999
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+.+.+|..+... . ....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~--------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D--------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C---------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc------c--------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999988888888766431 0 1134667889999999999998 88999999999999999999999
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+..|
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP---- 294 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP---- 294 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----
Confidence 6777655 89999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhcCCCCCCEEEccCCccc
Q 047097 336 FINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
..+..+++|+.+++..+.+.
T Consensus 295 --~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 --SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp --GGGGGSCTTCEEECCGGGSC
T ss_pred --HHHhhccCceEEeCCHHHHH
Confidence 78899999999999987665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=240.22 Aligned_cols=268 Identities=25% Similarity=0.287 Sum_probs=215.6
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35899999999998 7777665 79999999999998 5666 5789999999999998 5665 6789999999
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+++ +|. .+++|+.|++++|.+...+.. +++|++|++++|.+++ +|. .+++|+.|++++|.++ .+
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence 9999984 454 578899999999988876643 3789999999998874 443 3577899999999988 57
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI 337 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 337 (443)
| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++|+.|++++|.+++..
T Consensus 177 ~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------- 237 (622)
T 3g06_A 177 P----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------- 237 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC-------
T ss_pred c----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC-------
Confidence 6 257889999999999884 5543 4788999999998874 333 3578999999999887633
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 416 (443)
..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..|..+..+
T Consensus 238 ---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 34578899999999888 5665 2477889999999888 778888888999999999999888877766544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=232.74 Aligned_cols=245 Identities=20% Similarity=0.189 Sum_probs=149.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
..++.++..++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 345666666653 343332 57788888888887777777778888888888888777666677777778888888777
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC-cCcccc-ccccCCCcCcEEecccCcCCCCCC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
.+++..+..|..+++|++|++++|.++...+..+.++++|+.|++++| .+.... ..+..+++|++|++++|.+++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 777555556777777777777777777555556677777777777663 333332 3455566666666666665532 2
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3445555555555555555322322 22555555555555555554455555555555555555555544444445555
Q ss_pred CCCEEECCCCcCC
Q 047097 315 NLSWLNMGINNLG 327 (443)
Q Consensus 315 ~L~~L~l~~n~l~ 327 (443)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 5555555555443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=243.66 Aligned_cols=290 Identities=25% Similarity=0.313 Sum_probs=239.0
Q ss_pred CCCCCCCCCCCceeeee--------eCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCC
Q 047097 52 TSSWNNSMNLCQWTGVI--------CGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~~~~~~--------c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 123 (443)
...|....++|.|.+.. |.. ..++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 34577777888886532 322 35899999999998 5566555 89999999999998 5665 5789
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 999999999998 5666 67999999999999984 554 67899999999999984 6654 48999999999
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
|.+.+.+. ..++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|
T Consensus 151 N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~ 217 (622)
T 3g06_A 151 NQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLP 217 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCC
T ss_pred CcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccC
Confidence 99887654 34689999999999984 55 45789999999999998 5664 4689999999999998 555
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.. +++|++|++++|++++ +| ..+++|+.|++++|.++.... .+++|+.|++++|.++ .+|..
T Consensus 218 ~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 218 AL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCC-SCCGG
T ss_pred CC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCC-cCCHH
Confidence 43 4789999999999986 44 567899999999999975332 5689999999999999 88988
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccC
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 394 (443)
+..+ ++|+.|++++|.+++..|..+..+++
T Consensus 280 l~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 280 LIHL-SSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp GGGS-CTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred Hhhc-cccCEEEecCCCCCCcCHHHHHhccc
Confidence 8876 89999999999999998888776554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=229.76 Aligned_cols=245 Identities=20% Similarity=0.165 Sum_probs=174.7
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
..++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34666666665 3444443 68999999999999888888999999999999999998777788889999999999999
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCc-Ccccc-ccccCCCcCcEEecccCcCCCCCC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRI-DSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
.++...+..|..+++|++|++++|.+....+..+.++++|+.|++++|. +.... ..+..+++|++|++++|.++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 9886655678888999999999998886666678888888888888743 33333 45666777777777777766 333
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 35566666666666666663323 3333666666666666666655566666666666666666666655555556666
Q ss_pred CCCEEECCCCcCC
Q 047097 315 NLSWLNMGINNLG 327 (443)
Q Consensus 315 ~L~~L~l~~n~l~ 327 (443)
+|+.|++++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 6666666666654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=259.68 Aligned_cols=339 Identities=13% Similarity=0.078 Sum_probs=219.2
Q ss_pred CCCCCCEEECCCCcCccc----CCcccCCCCCCCEEEccCCcCCC----CCCccccCCCCCcEEecccccceeccCcccc
Q 047097 96 NLSFLRYINLANNGFLGE----IPPQIGRQDMLEGLVLSNNSFSG----TIPTNLSRCSNLIELFVDTNYLVGEIPAAIG 167 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 167 (443)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344555555555544332 22223344555555555554431 122233345555555555555442 344455
Q ss_pred CCCCCcEEeccccccC---CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCC
Q 047097 168 GLFKLERLFIFHNHIT---GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSL 243 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L 243 (443)
.+++|+.|+++..... ...+..+..+++|+.++++++.....+..+..+++|++|++++|.+++... ..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 5555555555432111 123344556666666666665444444566678888899998888654333 335778889
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCC-----------CcCccc-CCccccCCCCCCEEecccCcccccCCcccc
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNG-----------NNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
++|+++ +.+.+.....+...+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 999888 4444333334444688899999983 455533 223345689999999988899887766666
Q ss_pred C-CCCCCEEECC----CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCc--ccccCchhHHhhccCCCEEeCcCCcCccc
Q 047097 312 R-LKNLSWLNMG----INNLGTGTANELDFINLLTNCSKLERLYFNRNR--FEGELPHSVANLSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 312 ~-l~~L~~L~l~----~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 384 (443)
. +++|+.|+++ .|.+++... +..+...+.++++|++|++++|. +++..+..+...+++|+.|++++|++++.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~-~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPL-DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCC-HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred hhCCCCcEEEEeecCCCccccCchH-HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 5 8999999996 556655322 22334557779999999998654 77777777777668999999999999874
Q ss_pred -CchhhhcccCCCeecccccccccc-CchhccCCCCCCeeecccCcCccccCccc
Q 047097 385 -IPPEIRKLVSLNWLTIDRNQLTGT-IPPEIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 385 -~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
++..+..+++|++|++++|.+++. ++.....+++|+.|++++|++++.....+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 556678899999999999998865 44455679999999999999987744433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=230.80 Aligned_cols=246 Identities=20% Similarity=0.181 Sum_probs=133.4
Q ss_pred CcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEeccc
Q 047097 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++..+..++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.... ..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 4555443 57777777777777666667777777777777766666555 4555666666666666
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCccccc
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|+..+.++ ..+..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 6665444444555566666666666555 4444444455555555555532222222 2344455555555555554432
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
| .+..+ ++|++|++++|.+++..|..+..+ ++|+.|++++|++++..
T Consensus 212 -~-~~~~l------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 212 -P-NLTPL------------------------------VGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp -C-CCTTC------------------------------TTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEEC
T ss_pred -c-ccccc------------------------------ccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceEC
Confidence 1 23444 455555555555544444444433 44555555555555444
Q ss_pred chhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555555555555555555333344455555555555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=217.04 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=191.6
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC
Q 047097 125 EGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 125 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------- 74 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------------- 74 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----------------
Confidence 45666666665 445433 35666666666666654445555556666666655555544343
Q ss_pred cCccccccccCCCcCcEEecccCc-CCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 205 ILWGRIDSLVQLRNLLLLDIAFNH-FSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
.+..+++|++|++++|. +....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+
T Consensus 75 -------~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 75 -------AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp -------TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCH
Confidence 44455666666666665 555557778889999999999999984 444444488999999999999987666
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP------HAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH------hHccCcccccEeeCCCCcCCcCCHHH
Confidence 778899999999999999987777778899999999999999987766 66788899999999999998544444
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC--CCCCCeeecccC
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE--LKNLQLLNLGGN 427 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~--l~~L~~L~l~~n 427 (443)
+..+ ++|+.|++++|.+.+..+.. .-...++.+....+.+....|+.+.+ +..++..++.||
T Consensus 221 ~~~l-~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPL-RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTC-TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccC-cccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 5554 88999999999887543321 12234556667788888888887754 445556666665
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=229.48 Aligned_cols=246 Identities=17% Similarity=0.208 Sum_probs=146.2
Q ss_pred CcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEeccc
Q 047097 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.... ..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666666 5565544 57777888877777666677777777777777777766655 5666677777777777
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccC-CccccCCCCCCEEecccCccccc
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 7766544455666666777777776666 455444446666666666664332233 3345566666666666666652
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
+| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCC
T ss_pred cc-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccC
Confidence 22 24555566666666665555444 345555555555555555554444333332 45555555555555444
Q ss_pred chhhhcccCCCeecccccccc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 444555555555555555543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-30 Score=238.33 Aligned_cols=266 Identities=18% Similarity=0.176 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCc-ccCCcccC-------CCCC
Q 047097 52 TSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFL-GEIPPQIG-------RQDM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~-------~l~~ 123 (443)
...|.....|+.+..+.......+++.+++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34565555555544433222224566677777777 455544443 777788877773 34555554 6777
Q ss_pred CCEEEccCCcCCCCCCccc--cCCCCCcEEecccccceeccCccccCC-----CCCcEEeccccccCCCCCccccCCCCC
Q 047097 124 LEGLVLSNNSFSGTIPTNL--SRCSNLIELFVDTNYLVGEIPAAIGGL-----FKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++++++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 8888888888777777765 7777888888888877755 6666655 777777777777776666777777777
Q ss_pred CEEEccCCcCccc---cccc--cCCCcCcEEecccCcCCC--CCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCc
Q 047097 197 LAFDVRENILWGR---IDSL--VQLRNLLLLDIAFNHFSG--TIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268 (443)
Q Consensus 197 ~~L~l~~n~~~~~---~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 268 (443)
++|++++|.+.+. +..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..|...+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 7777777765443 1222 555666666666665552 111 1223445555555555555543333322234555
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCC
Q 047097 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 55555555555 4444433 4555555555555433 22 444444555555444443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-29 Score=233.61 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=123.8
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCc
Q 047097 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 126 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
..+++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34444444443333334445566666666666665545556666666666666666653332 5555555555555555
Q ss_pred CccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCcc
Q 047097 206 LWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS 285 (443)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 285 (443)
+.+.+ ..++|++|++++|.+++..+ . .+++|++|++++|.+++..+..
T Consensus 92 l~~l~----~~~~L~~L~l~~n~l~~~~~-------------------------~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNNISRVSC-------------------------S---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSCCSEEEE-------------------------C---CCSSCEEEECCSSCCCSGGGBC
T ss_pred ccccc----CCCCcCEEECCCCccCCcCc-------------------------c---ccCCCCEEECCCCCCCCccchh
Confidence 44322 12444555555544442221 1 2344455555555544433444
Q ss_pred ccCCCCCCEEecccCcccccCCccc-cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 364 (443)
+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++... ...+++|++|++++|.++ .+|..+
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~ 210 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--------QVVFAKLKTLDLSSNKLA-FMGPEF 210 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--------CCCCTTCCEEECCSSCCC-EECGGG
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--------ccccccCCEEECCCCcCC-cchhhh
Confidence 4444555555555555544433333 234455555555554443311 112445555555555555 233333
Q ss_pred HhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecc
Q 047097 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLG 425 (443)
Q Consensus 365 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~ 425 (443)
..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.++++
T Consensus 211 ~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 211 QSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGG-TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccc-CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 332 44555555555555 34444555555555555555555 4444555555555555555
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-29 Score=233.66 Aligned_cols=208 Identities=19% Similarity=0.249 Sum_probs=158.0
Q ss_pred CCCcCcEEecccCcCCCCCChhh--hCCCCCcEEEcccCCCCccCchhhhcCC-----CCccEEeCCCCcCcccCCcccc
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPI--FNISSLEVISLSENRFTGSLPVDTGVNL-----PNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~l~ 287 (443)
.+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+. .+ ++|++|++++|++++..+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 46777777777777777777765 6778888888888888744 54433 33 7888888888888877777888
Q ss_pred CCCCCCEEecccCccccc--CCccc--cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 288 NASRLEMIEFSRNQFSGR--VSVDF--SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 288 ~~~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++... .....+..+++|++|++++|.+++..|..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---VCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---HHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---HHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 888888888888887654 22333 788899999999988863211 01134467789999999999998766543
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccc
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
.+...++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 3333478999999999998 7787776 8899999999999944 76 88999999999999999864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-28 Score=226.37 Aligned_cols=218 Identities=17% Similarity=0.125 Sum_probs=126.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 345566666666655555555566677777777777776666677777777777777777764333 666777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~--------------------------~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS--------------------------RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC--------------------------CCSSCEEEECCSSCCCSGG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc--------------------------ccCCCCEEECCCCCCCCcc
Confidence 777665321 225566666666555432211 2345666666666666544
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+..+..+++|++|++++|.+.+..+..+...+++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhccc
Confidence 445555666666666666666433333333456666666666666532 21 2235556666666665553322 24455
Q ss_pred CCCCEEECCCCcCC
Q 047097 314 KNLSWLNMGINNLG 327 (443)
Q Consensus 314 ~~L~~L~l~~n~l~ 327 (443)
++|+.|++++|.++
T Consensus 214 ~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 214 AGVTWISLRNNKLV 227 (317)
T ss_dssp TTCSEEECTTSCCC
T ss_pred CcccEEECcCCccc
Confidence 55555555555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=204.40 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=149.3
Q ss_pred CCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCC
Q 047097 59 MNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 59 ~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 138 (443)
.+.|.|.|+.|.-. ...+.++++++.++. +|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999988643 456789999999875 454443 68999999999998776778999999999999999998555
Q ss_pred CccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCC
Q 047097 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~ 217 (443)
+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+ ..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 556788999999999999888666667788888888888888888666666677777777777766665554 3355555
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
+|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 5555555555555443334445555555555555554 33333333444444444444443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=232.09 Aligned_cols=234 Identities=18% Similarity=0.188 Sum_probs=131.8
Q ss_pred CCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEeccc
Q 047097 147 NLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAF 226 (443)
Q Consensus 147 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~ 226 (443)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++ |++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-----------------------L~~L~Ls~ 89 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST-----------------------LRTLDLNN 89 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTT-----------------------CCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCC-----------------------CCEEEecC
Confidence 55555555555554444555555555555555555543332 444444 44444444
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
|.+++.. ..++|++|++++|.+.+ ++.. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 90 N~l~~l~-----~~~~L~~L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 90 NYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CcCCCCC-----CCCCcCEEECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 4444211 12555666666665552 2221 3455666666666666555555666666666666666666655
Q ss_pred Ccccc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 307 SVDFS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 307 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
|..+. .+++|+.|++++|.+++..+ ...+++|++|++++|.+++ +|..+..+ ++|+.|++++|.+++ +
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l-~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--------QVVFAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNKLVL-I 229 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--------CCCCTTCCEEECCSSCCCE-ECGGGGGG-TTCSEEECTTSCCCE-E
T ss_pred hHHHhhhCCcccEEecCCCccccccc--------cccCCCCCEEECCCCCCCC-CCHhHcCC-CCccEEEecCCcCcc-c
Confidence 55554 56666666666666654422 2245666666666666663 33334443 566666666666663 5
Q ss_pred chhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLG 425 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~ 425 (443)
|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 556666666666666666666 4556666666666666664
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-28 Score=247.69 Aligned_cols=345 Identities=12% Similarity=0.028 Sum_probs=257.2
Q ss_pred CcEEEEEcCCCCCcee----cCccccCCCCCCEEECCCCcCc----ccCCcccCCCCCCCEEEccCCcCCCCCCccccCC
Q 047097 74 QRVTRLDLRNQSIGGT----LSPYVGNLSFLRYINLANNGFL----GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRC 145 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 145 (443)
+.+++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 5688899998877655 3334567899999999999987 3455567789999999999999884 77888999
Q ss_pred CCCcEEecccccce---eccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcCc
Q 047097 146 SNLIELFVDTNYLV---GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLL 220 (443)
Q Consensus 146 ~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L~ 220 (443)
++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 99999999864322 23445678889999999988643 367788889999999999999865544 4468899999
Q ss_pred EEecccCcCCCCCChhhhCCCCCcEEEccc-----------CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccC-
Q 047097 221 LLDIAFNHFSGTIPPPIFNISSLEVISLSE-----------NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN- 288 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~- 288 (443)
+|+++++...+.++.....+++|++|++++ +.+++.....+...+++|++|++..+.+++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 999994332333444456789999999993 45553333333446899999999999998776666665
Q ss_pred CCCCCEEecc----cCccccc-----CCccccCCCCCCEEECCCCc--CCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 289 ASRLEMIEFS----RNQFSGR-----VSVDFSRLKNLSWLNMGINN--LGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 289 ~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++|++|+++ .|.+++. ++..+..+++|++|+++.+. +++.. +......+++|++|++++|+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-----~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-----LSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-----HHHHHHSCTTCCEEEECSCCSS
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-----HHHHHHhCccceEeeccCCCCC
Confidence 8999999997 5677653 33336679999999997643 43322 1233345899999999999998
Q ss_pred ccCchhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCchhc-cCCCCCCeeecc
Q 047097 358 GELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLG 425 (443)
Q Consensus 358 ~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~ 425 (443)
+.....+...+++|+.|++++|.+++. ++..+..+++|+.|++++|++++.....+ ..+|.+....+.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 644444444458999999999998865 44556789999999999999986644444 356666554443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-29 Score=251.25 Aligned_cols=359 Identities=11% Similarity=0.112 Sum_probs=232.2
Q ss_pred CcEEEEEcCCCCCceecCcccc-CCCCCCEEECCCC-cCccc-CCcccCCCCCCCEEEccCCcCCCCCCccc----cCCC
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVG-NLSFLRYINLANN-GFLGE-IPPQIGRQDMLEGLVLSNNSFSGTIPTNL----SRCS 146 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~ 146 (443)
+++++|+++++.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+.+..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677778877777665555554 5777888888777 44432 33444467778888888777665444333 3556
Q ss_pred CCcEEeccccc--cee-ccCccccCCCCCcEEecccc-ccCCCCCccccCCCCCCEEEccCCcC----------------
Q 047097 147 NLIELFVDTNY--LVG-EIPAAIGGLFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENIL---------------- 206 (443)
Q Consensus 147 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~---------------- 206 (443)
+|++|++++|. +.. .++..+..+++|++|++++| .+. .++..+..+++|++|++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 77888877775 221 11122344677777777776 333 2455556666666666543311
Q ss_pred ----------c-----cccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccE
Q 047097 207 ----------W-----GRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270 (443)
Q Consensus 207 ----------~-----~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 270 (443)
. ..+..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 0 011222256778888888887653322 22456788888888877 432222233335788888
Q ss_pred EeCCC---------CcCcccCCccc-cCCCCCCEEecccCcccccCCcccc-CCCCCCEEECC--C----CcCCCcCCCc
Q 047097 271 LSPNG---------NNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFS-RLKNLSWLNMG--I----NNLGTGTANE 333 (443)
Q Consensus 271 L~l~~---------n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~ 333 (443)
|++.+ +.+++.....+ ..+++|++|.+..|.+++.....+. .+++|+.|+++ + +.++... .+
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-~~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-LD 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC-TH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc-hh
Confidence 88833 34443222223 3478899998888888776555554 58899999998 3 3443221 12
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhh-hcccCCCeeccccccccccCch-
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPP- 411 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~- 411 (443)
..+...+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 23334567889999999987 77766666676656889999999999987666555 7799999999999999765554
Q ss_pred hccCCCCCCeeecccCcCccccCcc
Q 047097 412 EIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
....+++|+.|++++|+++....+.
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 3456899999999999996554433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=225.54 Aligned_cols=219 Identities=18% Similarity=0.129 Sum_probs=119.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+++..|..|+.+++|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44467777777777776666677777777777777777765443 667777777777777766322 12566666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+++..+. .+ ++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 105 ~L~~N~l~~~~~~---~l-----------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 105 HAANNNISRVSCS---RG-----------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp ECCSSCCCCEEEC---CC-----------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ECcCCcCCCCCcc---cc-----------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 6666666543221 12 344555555555554444444555555555555555554
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
..|..+...+++|+.|++++|.+++. +. ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp----- 230 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE----- 230 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC-----
T ss_pred cChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccc-----
Confidence 34433333445555555555555533 11 2235555555555555554322 2445555555555555554321
Q ss_pred hhhhhcCCCCCCEEEccCCccc
Q 047097 336 FINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
..+..+++|+.|++++|++.
T Consensus 231 --~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 --KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --TTCCCCTTCCEEECTTCCBC
T ss_pred --hhhccCCCCCEEEcCCCCCc
Confidence 22444455555555555554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=197.62 Aligned_cols=207 Identities=20% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46778888888777666667777777888888777777555566777777777777777777666666777777777777
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+.+..+..+..+++|++|++++|.+... .+|..+..+++|++|++++|.+++ +
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~-~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQS-I 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCE-E
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCc-C
Confidence 77776654444555555555555555544331 134444444555555555555442 2
Q ss_pred chhhhcCCCCcc----EEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 258 PVDTGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 258 ~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+...+..+++++ .|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 211111223333 55555555553333222 22356666666666655444445566666666666666654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=196.68 Aligned_cols=208 Identities=22% Similarity=0.243 Sum_probs=116.6
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 3455555555554443444555555555555555554 333333335555666666666555544455556666666666
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCCcC-CCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCC----
Q 047097 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT-ANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK---- 372 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~---- 372 (443)
++|.+.+..+..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..+..+..+ +.|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNL 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCc------hhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccce
Confidence 666665544445566666666666666655432 3 445556666666666666664444444443 4444
Q ss_pred EEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 373 QIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 373 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
.|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 181 ~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666776664333333 33467777777777664444445666777777777777765554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-27 Score=239.40 Aligned_cols=354 Identities=14% Similarity=0.090 Sum_probs=226.6
Q ss_pred CcEEEEEcCCCCCcee---cC------------ccccCCCCCCEEECCCCcCcccCCcccC-CCCCCCEEEccCC-cCCC
Q 047097 74 QRVTRLDLRNQSIGGT---LS------------PYVGNLSFLRYINLANNGFLGEIPPQIG-RQDMLEGLVLSNN-SFSG 136 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~---~~------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~ 136 (443)
++++.|+++++..... .| .....+++|++|++++|.+++..+..+. .+++|++|++++| .+.+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5678888887642211 11 1124678999999999988876666665 6889999999988 4443
Q ss_pred C-CCccccCCCCCcEEecccccceeccCcccc----CCCCCcEEeccccc--cCCC-CCccccCCCCCCEEEccCC-cCc
Q 047097 137 T-IPTNLSRCSNLIELFVDTNYLVGEIPAAIG----GLFKLERLFIFHNH--ITGQ-LPASIGNLSSLLAFDVREN-ILW 207 (443)
Q Consensus 137 ~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~~~ 207 (443)
. ++..+.++++|++|++++|.+++..+..+. .+++|+.|++++|. ++.. ++....++++|+.|++++| .+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 344455789999999999988765444443 67799999999886 2211 1122345799999999988 333
Q ss_pred cccccccCCCcCcEEecccCcC--------------------------C----CCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 208 GRIDSLVQLRNLLLLDIAFNHF--------------------------S----GTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~--------------------------~----~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
+.+..+..+++|++|+++.+.. . +.++..+..+++|++|++++|.+.+..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 3335566777888887654421 1 112222334567777777777655433
Q ss_pred chhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEeccc---------CcccccCCcccc-CCCCCCEEECCCCcC
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSR---------NQFSGRVSVDFS-RLKNLSWLNMGINNL 326 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~l 326 (443)
...+...+++|++|++.+| ++. .++.....+++|++|++.+ +.+++.....+. .+++|+.|.++.+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3333346677777777766 331 2222233467777777733 344433222232 367777777766666
Q ss_pred CCcCCCchhhhhhhcCCCCCCEEEcc--C----CcccccCch-----hHHhhccCCCEEeCcCCcCcccCchhhhc-ccC
Q 047097 327 GTGTANELDFINLLTNCSKLERLYFN--R----NRFEGELPH-----SVANLSSTIKQIAMGRNRISGTIPPEIRK-LVS 394 (443)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~L~~L~Ls--~----n~l~~~~p~-----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~ 394 (443)
++... ......+++|+.|+++ + +.+++ .|. .+...+++|+.|++++ .+++..+..+.. +++
T Consensus 385 ~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 385 TNAAL-----ITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp CHHHH-----HHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred CHHHH-----HHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 54222 1222357889999998 3 45552 211 1223347899999977 677666666665 889
Q ss_pred CCeeccccccccccCchhc-cCCCCCCeeecccCcCccccCc
Q 047097 395 LNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 395 L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
|+.|++++|.+++..+..+ ..+++|+.|++++|++++..+.
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 9999999999987666665 6789999999999999765443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=196.17 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=122.4
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
.+++..+.+.+. .....+++|+.|++.+|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 344444444322 2344566666666666665433 3355566666666666666532 3555666666666666666
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 98 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 174 (272)
T 3rfs_A 98 Q-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-- 174 (272)
T ss_dssp C-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred C-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--
Confidence 5 3443333355666666666666665444455566666666666666665555445556666666666666554443
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhc
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI 413 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 413 (443)
..+..+++|++|++++|++++..|..+..+ ++|+.|++++|.+.+. +++|+.+++..|.++|.+|..+
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHHhCC-cCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 334555566666666666554333333332 5555555555555422 3345555555555555555555
Q ss_pred cCCC
Q 047097 414 GELK 417 (443)
Q Consensus 414 ~~l~ 417 (443)
+.++
T Consensus 243 ~~~~ 246 (272)
T 3rfs_A 243 GSVA 246 (272)
T ss_dssp SCBC
T ss_pred cccC
Confidence 4443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-23 Score=185.97 Aligned_cols=200 Identities=22% Similarity=0.253 Sum_probs=90.4
Q ss_pred CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc
Q 047097 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH 179 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 179 (443)
.++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455555555554 3343222 3455555555555433333444445555555544444422222333444444444444
Q ss_pred cccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|.
T Consensus 95 n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 150 (270)
T 2o6q_A 95 NKLQALPI-----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150 (270)
T ss_dssp SCCCCCCT-----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCCcCCH-----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCH
Confidence 44332222 22333444444444444444443444445555555555555554 3333
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 3333445555555555555433333344445555555555544443333344444444444444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=210.59 Aligned_cols=261 Identities=12% Similarity=0.151 Sum_probs=138.9
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEecccccceeccC----ccccCCC-CCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIP----AAIGGLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 127 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4556666665555555555556666666666654433 4445555 55555555555554433333321
Q ss_pred cCCcCccccccccCC-CcCcEEecccCcCCCCCChhh----hCC-CCCcEEEcccCCCCccCchhhh---cC-CCCccEE
Q 047097 202 RENILWGRIDSLVQL-RNLLLLDIAFNHFSGTIPPPI----FNI-SSLEVISLSENRFTGSLPVDTG---VN-LPNLRQL 271 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~~~~~~~~~~~---~~-~~~L~~L 271 (443)
+... ++|++|++++|.+++..+..+ ... ++|++|++++|.+++..+..+. .. .++|++|
T Consensus 75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 1111 455555555555554443322 223 5666666666666533322221 12 2466666
Q ss_pred eCCCCcCcccC----CccccCCC-CCCEEecccCcccccCCccc----cCC-CCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 272 SPNGNNFTGSI----PVSLSNAS-RLEMIEFSRNQFSGRVSVDF----SRL-KNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 272 ~l~~n~l~~~~----~~~l~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
++++|.+++.. +..+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.++.... ..++..+.
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--~~l~~~l~ 221 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY--AELAYIFS 221 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHH
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--HHHHHHHh
Confidence 66666665322 22333443 67777777777765544332 334 477777777777654332 11223444
Q ss_pred C-CCCCCEEEccCCcccccCchhHHh---hccCCCEEeCcCCcCccc-------CchhhhcccCCCeecccccccccc
Q 047097 342 N-CSKLERLYFNRNRFEGELPHSVAN---LSSTIKQIAMGRNRISGT-------IPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 342 ~-~~~L~~L~Ls~n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
. .++|++|++++|.+++..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 347777777777777554433322 235677777777764322 223455666677777777776654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=190.08 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=127.8
Q ss_pred ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 166 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
+..+++|+.|++++|.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4455666666666666552 23456666666666666666543 35556666666666666666555555566666666
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 666666666 4444433356666666666666665555555666666666666666665555555666666666666666
Q ss_pred CCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+++..+ ..+..+++|++|++++|++.+.. +.++.+++..|.++|.+|.+++.+.
T Consensus 193 l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~--------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPD------GVFDRLTSLQYIWLHDNPWDCTC--------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCT------TTTTTCTTCCEEECCSSCBCCCT--------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCH------HHHhCCcCCCEEEccCCCccccC--------cHHHHHHHHHHhCCCcccCcccccC
Confidence 665544 44556666666666666665432 3455566666666666666665544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-23 Score=187.46 Aligned_cols=200 Identities=25% Similarity=0.220 Sum_probs=95.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+.+++++++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 445555666666666555 3443332 455666666666554445555556666666666665553222 14555555
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENR 252 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 252 (443)
+|++++|.++ .+|..+..+++|+.|++++|.+...+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555555 44444444444444444444444433 334444444444444444443333333444444444444444
Q ss_pred CCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCc
Q 047097 253 FTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
++ .+|...+..+++|++|++++|.++ .+|..+...++|+.+++++|.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44 333333333444444444444444 333333333344444444443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-25 Score=206.63 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=124.3
Q ss_pred CcEEecccccceeccCccccCC--CCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc-c-ccccCCCcCcEEe
Q 047097 148 LIELFVDTNYLVGEIPAAIGGL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR-I-DSLVQLRNLLLLD 223 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~-~~l~~l~~L~~L~ 223 (443)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+... . ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666554 3344444 5666666666666644333 33455555555555544332 1 3344444555555
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccC-c
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRN-Q 301 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n-~ 301 (443)
+++|.+++..+..+..+++|++|++++|. .+++ .++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------------GFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------------SCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCC------------------------CCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 55554444444444444444444444441 3332 13333444555555555555 4
Q ss_pred cccc-CCccccCCC-CCCEEECCCCc--CCCcCCCchhhhhhhcCCCCCCEEEccCCc-ccccCchhHHhhccCCCEEeC
Q 047097 302 FSGR-VSVDFSRLK-NLSWLNMGINN--LGTGTANELDFINLLTNCSKLERLYFNRNR-FEGELPHSVANLSSTIKQIAM 376 (443)
Q Consensus 302 l~~~-~~~~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~~L~~L~l 376 (443)
+++. ++..+..++ +|++|++++|. ++. ..++..+..+++|++|++++|. +++..+..+..+ ++|+.|++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l 254 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSL 254 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEEC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC-CCCCEeeC
Confidence 4432 233344455 55555555552 221 1122344455566666666665 444445445443 55666666
Q ss_pred cCCc-CcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 377 GRNR-ISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 377 ~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
++|. ++......+..+++|+.|++++| ++......+. ..++.|++++|++++..|..++
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 6653 32222234555666666666666 3322222221 1244455666666666665544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=199.97 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=176.0
Q ss_pred CCCEEEccCCcCcccc----ccccCCCcCcEEecccCcCCCCCChhh--hCCCCCcEEEcccCCCCccCc----hhhhcC
Q 047097 195 SLLAFDVRENILWGRI----DSLVQLRNLLLLDIAFNHFSGTIPPPI--FNISSLEVISLSENRFTGSLP----VDTGVN 264 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~----~~~~~~ 264 (443)
.++.+.+.++.+.... ..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ .... .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 3455555555443322 122344668999999999888888877 788999999999999886544 2223 6
Q ss_pred CCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccccc--C--CccccCCCCCCEEECCCCcCCCcCCCchhhhhhh
Q 047097 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR--V--SVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340 (443)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 340 (443)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++.... .....+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG---VCAALA 220 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH---HHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH---HHHHHH
Confidence 88999999999999877788889999999999999987652 1 2334688999999999998864221 001135
Q ss_pred cCCCCCCEEEccCCcccccCchhHHhhc--cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCC
Q 047097 341 TNCSKLERLYFNRNRFEGELPHSVANLS--STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 418 (443)
..+++|++|++++|.+++..|..+.... ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhCCC
Confidence 6789999999999999987787666542 68999999999999 7787774 89999999999999 4454 678899
Q ss_pred CCeeecccCcCccc
Q 047097 419 LQLLNLGGNFLQGS 432 (443)
Q Consensus 419 L~~L~l~~n~l~~~ 432 (443)
|+.|++++|++++.
T Consensus 296 L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 296 VDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCEECSSTTTSCC
T ss_pred ccEEECcCCCCCCC
Confidence 99999999999853
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=185.54 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=120.2
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCC
Q 047097 117 QIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 117 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
.+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +.. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 3567788888999888887 5666554 6788888888888877777888888888888888887743 222 556666
Q ss_pred CEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 197 ~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
+.|++++|.+...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence 6666666666554444555555555555555555444444555555555555555555 344443334555555555555
Q ss_pred cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 554333333344455555555555544 2333333344444444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-25 Score=211.40 Aligned_cols=245 Identities=15% Similarity=0.168 Sum_probs=118.5
Q ss_pred ccCccccCCCCCcEEeccccccCCCCC----ccccCCCCCCEEEccCCcCccc----c-------ccccCCCcCcEEecc
Q 047097 161 EIPAAIGGLFKLERLFIFHNHITGQLP----ASIGNLSSLLAFDVRENILWGR----I-------DSLVQLRNLLLLDIA 225 (443)
Q Consensus 161 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~----~-------~~l~~l~~L~~L~l~ 225 (443)
.++..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+... + ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667777788888888887765433 3355677777777777543321 1 123455666666666
Q ss_pred cCcCCC----CCChhhhCCCCCcEEEcccCCCCccCchhhhc---CC---------CCccEEeCCCCcCc-ccCC---cc
Q 047097 226 FNHFSG----TIPPPIFNISSLEVISLSENRFTGSLPVDTGV---NL---------PNLRQLSPNGNNFT-GSIP---VS 285 (443)
Q Consensus 226 ~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~~---------~~L~~L~l~~n~l~-~~~~---~~ 285 (443)
+|.+++ .++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|.++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666654 24445555666666666666654222221110 11 55555555555554 2222 23
Q ss_pred ccCCCCCCEEecccCcccc-----cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-
Q 047097 286 LSNASRLEMIEFSRNQFSG-----RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE- 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~- 359 (443)
+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++... ...++..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 3445555555555555542 12223444555555555555443110 011223344445555555555554433
Q ss_pred ---CchhHHh-hccCCCEEeCcCCcCcc----cCchhh-hcccCCCeeccccccccc
Q 047097 360 ---LPHSVAN-LSSTIKQIAMGRNRISG----TIPPEI-RKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 360 ---~p~~~~~-~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~ 407 (443)
++..+.. ..++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 1222111 02344444444444443 244433 334444444444444443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=182.88 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=146.2
Q ss_pred CCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCC
Q 047097 60 NLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 139 (443)
+|+.|.|..|.. ..+.++++++.++. +|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999963 34578999998874 444444 689999999999998888889999999999999999998778
Q ss_pred ccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCc
Q 047097 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+ ..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998766677888889999999998888665556677777777777777776665 35666666
Q ss_pred CcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 219 LLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6777776666665555556666666666666666653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-24 Score=205.61 Aligned_cols=269 Identities=12% Similarity=0.136 Sum_probs=151.2
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCCcCcccCC----cccCCCC-CCCEEEccCCcCCCCCCccccCC-----CCC
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIP----PQIGRQD-MLEGLVLSNNSFSGTIPTNLSRC-----SNL 148 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 148 (443)
.+++.+.+++.+|..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555557777777777665444 5566666 67777777776665555555443 666
Q ss_pred cEEecccccceeccCcc----ccCC-CCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccC-CCcCcEE
Q 047097 149 IELFVDTNYLVGEIPAA----IGGL-FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ-LRNLLLL 222 (443)
Q Consensus 149 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~-l~~L~~L 222 (443)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .+.. .++|++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-------------------AFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-------------------HHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-------------------HHHhCCCceeEE
Confidence 66666666665444332 2233 55666666666555433322211 1222 1355555
Q ss_pred ecccCcCCCCCC----hhhhCCC-CCcEEEcccCCCCccCchhhh---cCC-CCccEEeCCCCcCccc----CCccccC-
Q 047097 223 DIAFNHFSGTIP----PPIFNIS-SLEVISLSENRFTGSLPVDTG---VNL-PNLRQLSPNGNNFTGS----IPVSLSN- 288 (443)
Q Consensus 223 ~l~~n~~~~~~~----~~l~~~~-~L~~L~l~~n~~~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~----~~~~l~~- 288 (443)
++++|.+++..+ ..+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 555555543222 2223333 666666666666533332211 123 4666666666666532 3333433
Q ss_pred CCCCCEEecccCcccccCC----ccccCCCCCCEEECCCCcCCCcCCCc-hhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 289 ASRLEMIEFSRNQFSGRVS----VDFSRLKNLSWLNMGINNLGTGTANE-LDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+....... ..+...+..+++|+.|++++|++.+..+..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 3467777777777765433 23456677888888777754443321 123345667788888999999888766655
Q ss_pred HHh
Q 047097 364 VAN 366 (443)
Q Consensus 364 ~~~ 366 (443)
+..
T Consensus 304 ~~~ 306 (362)
T 3goz_A 304 ISN 306 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-24 Score=201.05 Aligned_cols=255 Identities=13% Similarity=0.157 Sum_probs=159.7
Q ss_pred CCEEECCCCcCcccCCcccCCC--CCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceec-cCccccCCCCCcEEe
Q 047097 100 LRYINLANNGFLGEIPPQIGRQ--DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGE-IPAAIGGLFKLERLF 176 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~ 176 (443)
++.++++++.+. +..+..+ +.+++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 778999988876 4556666 7899999999988866555 55788889999988887754 666777888888888
Q ss_pred ccccccCCCCCccccCCCCCCEEEccCC-cCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccC-CCC
Q 047097 177 IFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN-RFT 254 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~~~ 254 (443)
+++|.+++..+..++.+++|++|++++| .+... .++..+..+++|++|++++| .++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence 8888777666666666666666666665 33321 12333444555555555555 554
Q ss_pred cc-CchhhhcCCC-CccEEeCCCC--cCc-ccCCccccCCCCCCEEecccCc-ccccCCccccCCCCCCEEECCCCcCCC
Q 047097 255 GS-LPVDTGVNLP-NLRQLSPNGN--NFT-GSIPVSLSNASRLEMIEFSRNQ-FSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 255 ~~-~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+. ++..+. .++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. .
T Consensus 183 ~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~ 259 (336)
T 2ast_B 183 EKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--D 259 (336)
T ss_dssp HHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--T
T ss_pred hHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--C
Confidence 32 232222 455 6666666666 333 3445555666777777777776 555556666777777777777774 1
Q ss_pred cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhh
Q 047097 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR 390 (443)
Q Consensus 329 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 390 (443)
..+. ....+..+++|++|++++| +++.. +..+...++.|++++|++++..|..++
T Consensus 260 ~~~~---~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPE---TLLELGEIPTLKTLQVFGI-VPDGT---LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGG---GGGGGGGCTTCCEEECTTS-SCTTC---HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHH---HHHHHhcCCCCCEEeccCc-cCHHH---HHHHHhhCcceEEecccCccccCCccc
Confidence 1111 1134566777777777777 43222 222223355666677777766665554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=195.17 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=178.7
Q ss_pred CCCCCEEECCCCcCcccCCc---ccCCCCCCCEEEccCCcCCCCCCccc--cCCCCCcEEecccccceeccC----cccc
Q 047097 97 LSFLRYINLANNGFLGEIPP---QIGRQDMLEGLVLSNNSFSGTIPTNL--SRCSNLIELFVDTNYLVGEIP----AAIG 167 (443)
Q Consensus 97 l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~ 167 (443)
-..++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888877542111 12235669999999999998888887 889999999999999886544 3455
Q ss_pred CCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc---c--ccccCCCcCcEEecccCcCCCCCCh----hhh
Q 047097 168 GLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR---I--DSLVQLRNLLLLDIAFNHFSGTIPP----PIF 238 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~--~~l~~l~~L~~L~l~~n~~~~~~~~----~l~ 238 (443)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. . ..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 788999999999999888888899999999999999987653 2 23468899999999999986 3333 246
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCC---CCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCC
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNL---PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+++|++|++++|.+.+..|..+. .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 789999999999999976676554 33 79999999999999 6777664 7999999999999864 33 678899
Q ss_pred CCEEECCCCcCCC
Q 047097 316 LSWLNMGINNLGT 328 (443)
Q Consensus 316 L~~L~l~~n~l~~ 328 (443)
|+.|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999864
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=208.68 Aligned_cols=267 Identities=18% Similarity=0.185 Sum_probs=151.5
Q ss_pred cCCcccCCCCCCCEEEccCCcCCCCCC----ccccCCCCCcEEeccccc---ceeccCccc-------cCCCCCcEEecc
Q 047097 113 EIPPQIGRQDMLEGLVLSNNSFSGTIP----TNLSRCSNLIELFVDTNY---LVGEIPAAI-------GGLFKLERLFIF 178 (443)
Q Consensus 113 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~ 178 (443)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566667777777777777664433 235566777777776643 333334333 455666666666
Q ss_pred ccccCC----CCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCC---------CCCc
Q 047097 179 HNHITG----QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNI---------SSLE 244 (443)
Q Consensus 179 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---------~~L~ 244 (443)
+|.+++ .+|..+..+++|+.|++++|.+.... ..+ +..+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l--------------------~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI--------------------ARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH--------------------HHHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH--------------------HHHHHHHhhhhhcccCCCCc
Confidence 665554 23344444555555555555443221 111 1112222 5666
Q ss_pred EEEcccCCCC-ccCch--hhhcCCCCccEEeCCCCcCcc-----cCCccccCCCCCCEEecccCccc----ccCCccccC
Q 047097 245 VISLSENRFT-GSLPV--DTGVNLPNLRQLSPNGNNFTG-----SIPVSLSNASRLEMIEFSRNQFS----GRVSVDFSR 312 (443)
Q Consensus 245 ~L~l~~n~~~-~~~~~--~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~ 312 (443)
+|++++|.+. +.++. .....+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 6666666665 22321 112255667777777776652 23335667777777777777775 445566677
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhh--cCCCCCCEEEccCCcccc----cCchhHHhhccCCCEEeCcCCcCcccCc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLL--TNCSKLERLYFNRNRFEG----ELPHSVANLSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~Ls~n~l~~----~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 386 (443)
+++|++|++++|.+++... ..++..+ +.+++|++|++++|.+++ .+|..+....++|+.|++++|.+++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHH--HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhH--HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7778888887777754321 1122444 337788888888888876 3666664434778888888888876653
Q ss_pred --hhh-hcccCCCeeccc
Q 047097 387 --PEI-RKLVSLNWLTID 401 (443)
Q Consensus 387 --~~l-~~l~~L~~L~l~ 401 (443)
..+ ..+++++.+++.
T Consensus 321 ~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 321 VVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHhhhcCcchhh
Confidence 222 234444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=178.71 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=129.9
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCc-CCCCCCccccCCCCCcEEeccc-ccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS-FSGTIPTNLSRCSNLIELFVDT-NYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 175 (443)
+++++|++++|.+++..+..|+++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999999887666688888899999999886 7755556788888888888887 88876666677888888888
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccC-cCCCCCChhhhCCCCCc-EEEcccCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN-HFSGTIPPPIFNISSLE-VISLSENRF 253 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~ 253 (443)
++++|.+++ +|. +..+++|+ .|++|++++| .+++..+..+..+++|+ +|++++|.+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred eCCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 888887774 454 44444443 1124555555 44433334455566666 666666666
Q ss_pred CccCchhhhcCCCCccEEeCCCCc-CcccCCccccCC-CCCCEEecccCcccccCCccccCCCCCCEEECCCC
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNN-FTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
+ .+|...+.. ++|++|++++|. +++..+..+..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5 555555423 566666666663 654444555556 6666666666666532221 4555556655543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=178.71 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=146.6
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCc-CcccCCcccCCCCCCCEEEccC-CcCCCCCCccccCCCCCcEE
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNG-FLGEIPPQIGRQDMLEGLVLSN-NSFSGTIPTNLSRCSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 151 (443)
..++.|++++|.+++..+..+.++++|++|++++|. +++..+.+|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998888899999999999999997 8866667899999999999998 99997667789999999999
Q ss_pred ecccccceeccCccccCCCCCc---EEecccc-ccCCCCCccccCCCCCC-EEEccCCcCccccc-cccCCCcCcEEecc
Q 047097 152 FVDTNYLVGEIPAAIGGLFKLE---RLFIFHN-HITGQLPASIGNLSSLL-AFDVRENILWGRID-SLVQLRNLLLLDIA 225 (443)
Q Consensus 152 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~-~l~~l~~L~~L~l~ 225 (443)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+.++++|+ +|++++|.+...+. .+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88888888 9999999 88866566677777777 77777776665442 2323 556666666
Q ss_pred cCc-CCCCCChhhhCC-CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 226 FNH-FSGTIPPPIFNI-SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 226 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
+|. +++..+..+..+ ++|++|++++|.++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 663 553334445555 55566666555555 44433 3445555555443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=176.78 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=102.1
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
..++++++++.++ .+|..+. +.+++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666666665 4444332 456666666666663 33333335666666666666666555555666666666666
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCc
Q 047097 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~ 377 (443)
++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS------GVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh------hHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECC
Confidence 6666665555555666666666666666655444 344555666666666666653333233333 556666666
Q ss_pred CCcCcccCchhhhcccCCCeeccccccccc
Q 047097 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 378 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
+|++++..+..+..+++|+.|++++|++.+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666665444455556666666666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=179.49 Aligned_cols=192 Identities=23% Similarity=0.340 Sum_probs=101.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + +.+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 45556666666665542 33 35555666666666665553 222 5556666666666665543 2 245556666666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+++ ++ .+..+++|++|++++|.+...+. +..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC-
Confidence 666665553 22 25555555555555555443332 44555555555555555532 22 555556666666666555
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++. ...+++|++|++++|.+++.. .+..+++|++|++++|+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 3332 224555666666665555322 2455555555555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=178.81 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=112.8
Q ss_pred ECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccC
Q 047097 104 NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 104 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
.+..+.+++.+ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 34444444322 2345778888888888877 344 577788888888888887743 33 777888888888888776
Q ss_pred CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhc
Q 047097 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGV 263 (443)
Q Consensus 184 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 263 (443)
+ + ..+..+++|+.|++++|.+...+. +..+++|++|++++|.+++.. . +..+++|++|++++|.+. .++. ..
T Consensus 99 ~-~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~--l~ 170 (308)
T 1h6u_A 99 N-V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVS-DLTP--LA 170 (308)
T ss_dssp C-C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCC-CCGG--GT
T ss_pred C-c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCC-CChh--hc
Confidence 4 2 246666666666666666554332 455555555555555554321 1 444555555555555554 2322 22
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
.+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 44455555555554442211 3444444444444444443221 34444444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=165.80 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=137.2
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45667777665 344333 457888888888887 56655555788888888888888865555667788888888888
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+.. .++|+.|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD------GVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH------hHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEecCC
Confidence 88886666667788888888888888876555 45677788888888888887433333444 377888888888
Q ss_pred cCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 380 RISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 380 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.+.+ .+++|++|+++.|+++|.+|+.++.++. ++..|...|..+..
T Consensus 159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 7663 3457778888888888888887776654 45555555444443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=189.33 Aligned_cols=187 Identities=25% Similarity=0.305 Sum_probs=127.3
Q ss_pred CCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCC
Q 047097 195 SLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 274 (443)
+++.|++++|.+.+.+..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. . +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEECC
Confidence 7778888888777755433 266788888888777 555 446777888888887773 665 32 2 77788888
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n 354 (443)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ .+ . +. ++|+.|++++|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp------~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP------E-LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC------C-CC--TTCCEEECCSS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc------h-hh--CCCCEEECcCC
Confidence 877774 555 56777788887777775 443 46677777777777766 22 1 22 67777777777
Q ss_pred cccccCchhHHhhccCC-------CEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCC
Q 047097 355 RFEGELPHSVANLSSTI-------KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 416 (443)
.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 191 ~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 777 5665 322 45 77777777777 567777777777777777777777777766554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=190.35 Aligned_cols=204 Identities=25% Similarity=0.280 Sum_probs=140.3
Q ss_pred CCCCCCCCC-----ceeee-eeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEE
Q 047097 54 SWNNSMNLC-----QWTGV-ICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGL 127 (443)
Q Consensus 54 ~w~~~~~~c-----~~~~~-~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 127 (443)
+|..+.++| .|.++ .|.. .+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455555667 68888 6753 578999999999987 55555 378999999999998 666 457889999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCc
Q 047097 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 128 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 207 (443)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999985 776 654 89999999998885 565 67888888888888874 554 4567777777777766
Q ss_pred cccccccCCCcCcEEecccCcCCCCCChhhhCCCCC-------cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 208 GRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL-------EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
+.+. +. ++|+.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..++ .+++|+.|++++|.+++
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCC
Confidence 6444 43 56666666666666 4444 322 44 55666666555 4555554 35555555555555555
Q ss_pred cCCcccc
Q 047097 281 SIPVSLS 287 (443)
Q Consensus 281 ~~~~~l~ 287 (443)
.+|..+.
T Consensus 245 ~~p~~l~ 251 (571)
T 3cvr_A 245 RIRESLS 251 (571)
T ss_dssp HHHHHHH
T ss_pred cCHHHHH
Confidence 5554443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=162.80 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=88.1
Q ss_pred EEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCc
Q 047097 198 AFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 198 ~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 277 (443)
.++.+++.+...+..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc
Confidence 3444444444333222 234555555555555433334455555555555555555 3444333345555555555555
Q ss_pred CcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCCCee
Confidence 554333344555555555555555554444444555555555555555544333 33444555555555555554
Q ss_pred ccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 358 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+.. +.|+.|+++.|+++|.+|..++.++
T Consensus 162 ~~~--------~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 CTC--------PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCT--------TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCC--------CCHHHHHHHHHhCCceeeccCcccc
Confidence 322 2344555555555555555554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=174.27 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=164.9
Q ss_pred EcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCC-ccccCCCCCcE-Eeccccc
Q 047097 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP-TNLSRCSNLIE-LFVDTNY 157 (443)
Q Consensus 80 ~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~ 157 (443)
+.++++++ .+|..+ .+++++|+|++|+++...+.+|+++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|+
T Consensus 15 ~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 33445555 345444 3579999999999986555679999999999999999876665 45788888775 5566788
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC-CcCcccc-ccccCCC-cCcEEecccCcCCCCCC
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE-NILWGRI-DSLVQLR-NLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~-~~l~~l~-~L~~L~l~~n~~~~~~~ 234 (443)
++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...+ ..+..+. .++.|++++|.++ .++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCC
Confidence 8877788899999999999999999866555666667777888765 4555544 4455543 5777888888877 455
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
......++|+++++.+++..+.+|...+..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+|. +..++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence 555566678888887543333777776667788888888888877 34432 244566666555543334453 66777
Q ss_pred CCCEEECCCC
Q 047097 315 NLSWLNMGIN 324 (443)
Q Consensus 315 ~L~~L~l~~n 324 (443)
+|+.++++++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 7777777643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=174.46 Aligned_cols=235 Identities=16% Similarity=0.115 Sum_probs=187.1
Q ss_pred CceeeeeeCCC---------CCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCC-cccCCCCCCCE-EEcc
Q 047097 62 CQWTGVICGRR---------HQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIP-PQIGRQDMLEG-LVLS 130 (443)
Q Consensus 62 c~~~~~~c~~~---------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l~ 130 (443)
|.+..|.|... ...+++|+|++|.++...+..|.++++|++|+|++|.+.+.++ .+|.+++++++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 66777888542 1468999999999998777889999999999999999876655 56889998876 5667
Q ss_pred CCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc-cccCCCCCccccCC-CCCCEEEccCCcCcc
Q 047097 131 NNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH-NHITGQLPASIGNL-SSLLAFDVRENILWG 208 (443)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~ 208 (443)
+|.+....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7899977788899999999999999999866666677778888999866 45664444556665 468999999999998
Q ss_pred ccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCcccc
Q 047097 209 RIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 287 (443)
.+.......+|+.+++.+++..+.+| ..+..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-.+.+|. +.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCCCCCC-TT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcCcCCC-ch
Confidence 88655566789999998644444665 45788999999999999998 88875 456777877766655556774 78
Q ss_pred CCCCCCEEecccCc
Q 047097 288 NASRLEMIEFSRNQ 301 (443)
Q Consensus 288 ~~~~L~~L~l~~n~ 301 (443)
.+++|+.+++.++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 89999999998654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=162.73 Aligned_cols=174 Identities=20% Similarity=0.293 Sum_probs=128.9
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 291 (443)
.+..+++|+.|++++|.+... + .+..+++|++|++++|.+. .++. ...+++|++|++++|.+++ ++ .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 345677888888888888743 3 4777888888888888887 4444 3378888888888888874 33 3778888
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+ ++|
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l-~~L 180 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKL 180 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh--hcCC-Ccc
Confidence 88888888888753 3577788888888888887653 346677888888888888875433 4443 778
Q ss_pred CEEeCcCCcCcccCchhhhcccCCCeeccccccccc
Q 047097 372 KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 888888888874 34 37788888888888888774
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=154.73 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=129.3
Q ss_pred CCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCC
Q 047097 53 SSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNN 132 (443)
Q Consensus 53 ~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 132 (443)
..|..+...|.|.++.|... .++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 34556778899999888642 222 2333332 78888999888888777888888888999999888
Q ss_pred cCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-c
Q 047097 133 SFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-D 211 (443)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~ 211 (443)
.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+...+ .
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 887555566788888999999988888666666788889999999988888 67888888889999999998888777 5
Q ss_pred cccCCCcCcEEecccCcCCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 678888999999999887744
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=153.52 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=112.6
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
+++++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 677643 3556788888888886544 346778888888888888887777677888888888888
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc
Q 047097 323 INNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 90 ~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRLENVQH------KMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCCCCCCG------GGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCccCccCH------hHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 888776655 556777777888887777776556555554 6677777777777766677777777777777777
Q ss_pred ccccc
Q 047097 403 NQLTG 407 (443)
Q Consensus 403 n~~~~ 407 (443)
|.+.+
T Consensus 163 N~l~c 167 (220)
T 2v70_A 163 NPFNC 167 (220)
T ss_dssp CCEEC
T ss_pred cCCcC
Confidence 77764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=153.07 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=120.5
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 777654 36888999999988876666788888899999999988887788888888888888888
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccc
Q 047097 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 403 (443)
|.++...+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 90 N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPK------SLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCH------hHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88876655 556778888888888888886556555554 77888888888888666666777888888888888
Q ss_pred ccc
Q 047097 404 QLT 406 (443)
Q Consensus 404 ~~~ 406 (443)
++.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 776
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-19 Score=166.42 Aligned_cols=176 Identities=20% Similarity=0.284 Sum_probs=126.2
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhc-CCCCccEEeCCCCcCcccCCccccCCCCCCEEecc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGV-NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+.++++++.++ .+|..+. +.++.|++++|.++ .++...+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56778877776 4555442 45778888888887 55555554 67888888888888886666677888888888888
Q ss_pred cCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH---hhccCCCEEe
Q 047097 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA---NLSSTIKQIA 375 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~~L~~L~ 375 (443)
+|++++..+..|..+++|++|++++|.+.+..+ ..+..+++|++|+|++|.++ .+|..++ ...++|+.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------HHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEE
Confidence 888877766677788888888888888876655 56777788888888888887 4555443 2236777788
Q ss_pred CcCCcCcccCchhhhcccC--CCeecccccccc
Q 047097 376 MGRNRISGTIPPEIRKLVS--LNWLTIDRNQLT 406 (443)
Q Consensus 376 l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~ 406 (443)
+++|.+++..+..+..++. ++.|++++|.+.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888777555556666665 367777777766
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=151.00 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=120.0
Q ss_pred CCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEEC
Q 047097 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 242 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 321 (443)
+-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567888888887 777653 478888888888888777888888888888888888887666666788888888888
Q ss_pred CCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccc
Q 047097 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 401 (443)
++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+ ++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 96 s~N~l~~l~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTNQLTVLPS------AVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCcCCccCh------hHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 8888876655 55677788888888888887 677776654 778888888888876555667777888888888
Q ss_pred ccccccc
Q 047097 402 RNQLTGT 408 (443)
Q Consensus 402 ~n~~~~~ 408 (443)
+|.+.+.
T Consensus 168 ~N~~~c~ 174 (229)
T 3e6j_A 168 GNPWDCE 174 (229)
T ss_dssp TSCBCTT
T ss_pred CCCccCC
Confidence 8877744
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=156.43 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=93.4
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcE
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 174 (443)
..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + +.+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 455666666666666653 22 35566666666666666653322 5566666666666665543 2 23555555555
Q ss_pred EeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
|++++|.+++ . ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 117 L~L~~n~i~~------------------------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 117 LSLEHNGISD------------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECTTSCCCC------------------------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EECCCCcCCC------------------------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555555542 1 2233444555555555555432 34555666666666666665
Q ss_pred ccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccc
Q 047097 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
+ ++. ...+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 170 ~-~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 D-IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred c-chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 322 2256666666666666653 33 25566666666666666553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-19 Score=176.62 Aligned_cols=187 Identities=19% Similarity=0.273 Sum_probs=147.9
Q ss_pred EEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 199 FDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 199 L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
+.+..+.+... ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-L-TNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-G-GGCTTCCEEECCSSCC
T ss_pred HhccCCCcccc-cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-h-ccCCCCCEEECcCCCC
Confidence 33444443332 234567889999999999874 33 5888999999999999998 4444 3 3899999999999999
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSSCCCC
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCCcCCC
Confidence 84 34 688899999999999999863 4588899999999999988764 357788999999999999986
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
..| +..+ ++|+.|++++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 168 ~~~--l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 555 5554 8899999999999853 4688899999999999998854
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=171.50 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+... + .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ +| .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 4567777777776543 2 46777777777777777764333 7777777777777777763 33 5677777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+. +..+++|+.|++++|.+++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-
Confidence 7777764 2 3577777777777777777643 566777777777777777766555 66777777777777777643
Q ss_pred ChhhhCCCCCcEEEcccCCCC
Q 047097 234 PPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~ 254 (443)
+.+..+++|+.|++++|.+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEE
T ss_pred -hHHccCCCCCEEEccCCcCc
Confidence 35667777777777777665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-20 Score=188.59 Aligned_cols=260 Identities=20% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEE----
Q 047097 30 SNETDRLALLAIKSQLH-DPLGVTSSWNN-SMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYI---- 103 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L---- 103 (443)
..+.++.++.++...+. ..+.....|.. ......|.+..+.. ++++.|++.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 34667788888887765 33333445633 33456687777655 6799999998887653 3322222223332
Q ss_pred -ECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecccccc
Q 047097 104 -NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182 (443)
Q Consensus 104 -~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 182 (443)
++..|.+. ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 23333333 45677888999999999999988 78888888999999999999998 7888899999999999999999
Q ss_pred CCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhh
Q 047097 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDT 261 (443)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~ 261 (443)
+ .+|..++++++|++|++++|.+...+..+..+++|+.|++++|.+++.+|..+..... ...+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 8 7798999999999999999988877777888999999999999998877776654322 22467888888766654
Q ss_pred hcCCCCccEEeCCCC--------cCcccCCccccCCCCCCEEecccCccc
Q 047097 262 GVNLPNLRQLSPNGN--------NFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3555666655 233333333445555566666666553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=149.40 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=127.7
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.+++++|.++ .+|..+ ...+++|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57889988887 466554 345689999999988544555555889999999999999877777888999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTTTTC-TTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH------hHcCCCccCCEEECCCCcCCEECHHHhcCC-CCCCEEEecCc
Confidence 99988877788899999999999999988776 567788999999999999997667777665 78999999999
Q ss_pred cCccc
Q 047097 380 RISGT 384 (443)
Q Consensus 380 ~l~~~ 384 (443)
.+.+.
T Consensus 164 ~l~c~ 168 (220)
T 2v70_A 164 PFNCN 168 (220)
T ss_dssp CEECS
T ss_pred CCcCC
Confidence 88764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=148.83 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=128.5
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 5665543 68999999999998 56665555889999999999999988888999999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhCC-CCCCEEEeCCC
Confidence 99997777778899999999999999988776 678889999999999999995555445554 88999999999
Q ss_pred cCcc
Q 047097 380 RISG 383 (443)
Q Consensus 380 ~l~~ 383 (443)
.+..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=160.47 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=147.1
Q ss_pred CEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhh-CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC
Q 047097 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275 (443)
Q Consensus 197 ~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 275 (443)
+.++++++.+...+..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 578999998888775443 4589999999999977777776 8999999999999998 56655555899999999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh---cCCCCCCEEEcc
Q 047097 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL---TNCSKLERLYFN 352 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l---~~~~~L~~L~Ls 352 (443)
|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++.... ..+ ..+++|+.|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECC
Confidence 99997777789999999999999999998888899999999999999999987654 333 678999999999
Q ss_pred CCcccccCchhHHhhccC--CCEEeCcCCcCcc
Q 047097 353 RNRFEGELPHSVANLSST--IKQIAMGRNRISG 383 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~--L~~L~l~~n~l~~ 383 (443)
+|++++..+..+..+ +. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHS-CHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhc-cHhhcceEEecCCCccC
Confidence 999994333445544 44 5889999999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=148.01 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=82.9
Q ss_pred hCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 047097 238 FNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317 (443)
Q Consensus 238 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 317 (443)
..+++|++|++++|.+. .+| .+. .+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN-------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC--------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh--------
Confidence 34455555555555554 444 222 4455555555555433 1223444444455555444444433333
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCc-CcccCchhhhcccCCC
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNR-ISGTIPPEIRKLVSLN 396 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 396 (443)
+..+++|++|++++|.+++..|..+..+ ++|+.|++++|. ++ .+| .+..+++|+
T Consensus 108 ----------------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 108 ----------------------LSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp ----------------------CTTCTTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred ----------------------hcCCCCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 4445555555555555554455545443 556666666665 43 344 566777777
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 77777777773 44 56777778888888877754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=145.92 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=70.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 333 3445555555555555433 22344455555555555555544444445555555555
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCc-CccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
++++|.+++..|..+..+++|++|++++|. +... ..+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 555555544444444444444444444443 2222 233444444444444444442 11 344445555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-20 Score=187.51 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=133.4
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc-------------ceeccCccccCCCCCcEEe-ccccccCC
Q 047097 119 GRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY-------------LVGEIPAAIGGLFKLERLF-IFHNHITG 184 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~l~~ 184 (443)
..+++|+.|++++|.+. .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777776 667777777777777776553 2334455555666666665 4443221
Q ss_pred CCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcC
Q 047097 185 QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVN 264 (443)
Q Consensus 185 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 264 (443)
+|+.+.+.+|.+...+. ..|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+. .
T Consensus 424 ----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-A 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-G
T ss_pred ----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-c
Confidence 12222222332222211 236777777777774 554 777777888888888777 7776555 7
Q ss_pred CCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC
Q 047097 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC 343 (443)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 343 (443)
+++|+.|++++|.+++ +| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..+... ..+..+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~---~l~~~l 559 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE---RLAEML 559 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT---HHHHHC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH---HHHHHC
Confidence 7788888888887774 55 6777788888888888887765 7777788888888888888776654211 234456
Q ss_pred CCCCEEEc
Q 047097 344 SKLERLYF 351 (443)
Q Consensus 344 ~~L~~L~L 351 (443)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 77887764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-18 Score=152.17 Aligned_cols=171 Identities=19% Similarity=0.307 Sum_probs=134.4
Q ss_pred CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCE
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 294 (443)
.+.++..++++.+.+++.. .+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3456777888888887433 5778899999999999987 666 333 78999999999999985443 888999999
Q ss_pred EecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEE
Q 047097 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 374 (443)
|++++|++++..+ +.. ++|+.|++++|.+++. ..+..+++|++|++++|++++ ++ .+..+ ++|+.|
T Consensus 90 L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--------~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l-~~L~~L 155 (263)
T 1xeu_A 90 LSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--------DSLIHLKNLEILSIRNNKLKS-IV-MLGFL-SKLEVL 155 (263)
T ss_dssp EECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--------GGGTTCTTCCEEECTTSCCCB-CG-GGGGC-TTCCEE
T ss_pred EECCCCccCCcCc--ccc-CcccEEEccCCccCCC--------hhhcCcccccEEECCCCcCCC-Ch-HHccC-CCCCEE
Confidence 9999999886332 233 8899999999988763 347788899999999999884 44 45554 789999
Q ss_pred eCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 375 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999998865 6788888999999999988844
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-18 Score=173.48 Aligned_cols=192 Identities=19% Similarity=0.187 Sum_probs=120.3
Q ss_pred EecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCc
Q 047097 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
+++..|.+. ..+..+..++.|+.|++++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 344444444 45677788899999999999988 8888877 8899999999999998 788888999999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcC
Q 047097 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 381 (443)
++ .+|..+..+++|++|+|++|.++.. + ..+..+++|++|+|++|.+++.+|..+.........+++++|.+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTL-P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCC-C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCcc-C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 98 6788899999999999999988643 3 45788999999999999999888887766433344578999999
Q ss_pred cccCchhhhcccCCCeeccccc--------cccccCchhccCCCCCCeeecccCcCcc
Q 047097 382 SGTIPPEIRKLVSLNWLTIDRN--------QLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~n--------~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++.+|.. |+.|++++| .+.+..+..+..+.+++...+++|-+.+
T Consensus 354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp CCCCCCC-----------------------------------------------CCCG
T ss_pred cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 9888754 455666666 3444444455666777778888887754
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=146.40 Aligned_cols=163 Identities=25% Similarity=0.278 Sum_probs=79.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence 33445555554333 3455666666666666665 333 455566666666666666532 22 556666666666666
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChh
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
++++ +|. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+.+.+ .+..+++|++|++++|.+++. ..
T Consensus 96 ~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 96 RLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp CCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred ccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HH
Confidence 6553 222 122 5555555555555532 23444444444444444444332 333444444444444444432 23
Q ss_pred hhCCCCCcEEEcccCCC
Q 047097 237 IFNISSLEVISLSENRF 253 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~ 253 (443)
+..+++|+.|++++|.+
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 33444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-19 Score=179.44 Aligned_cols=205 Identities=19% Similarity=0.185 Sum_probs=150.9
Q ss_pred cCCCCCcEEecccccceeccCccccCCCCCcEEeccccc-------------cCCCCCccccCCCCCCEEE-ccCCcCcc
Q 047097 143 SRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH-------------ITGQLPASIGNLSSLLAFD-VRENILWG 208 (443)
Q Consensus 143 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~~~~ 208 (443)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45778888888888876 678888888888888876553 2223333344444444443 222211
Q ss_pred ccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccC
Q 047097 209 RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN 288 (443)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 288 (443)
..|+.+.+++|.++. ++ ...|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..
T Consensus 423 --------~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------chhhhhhhhcccccc-cC-----ccCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhc
Confidence 123333344444431 11 135899999999998 5776 44 8999999999999999 88999999
Q ss_pred CCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcC-CCchhhhhhhcCCCCCCEEEccCCcccccCch--hHH
Q 047097 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT-ANELDFINLLTNCSKLERLYFNRNRFEGELPH--SVA 365 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~ 365 (443)
+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. + ..+..+++|+.|++++|++++..|. .+.
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p------~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI------QPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT------GGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc------HHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 9999999999999997 56 7999999999999999998876 6 6788999999999999999965443 233
Q ss_pred hhccCCCEEeC
Q 047097 366 NLSSTIKQIAM 376 (443)
Q Consensus 366 ~~~~~L~~L~l 376 (443)
...++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 44588998864
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-18 Score=158.04 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=100.9
Q ss_pred CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcC----CCCCChhhhCCCCC
Q 047097 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHF----SGTIPPPIFNISSL 243 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~~~~L 243 (443)
+++|+.+++.. .++..-+.+|.+|++|+.+++..|.+.... ..|..+.++..+....+.. ...-...+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 555444455666666666666666554444 4455554454444433211 11112223344444
Q ss_pred c-EEEcccCCCCccCchhhhc---CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 244 E-VISLSENRFTGSLPVDTGV---NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 244 ~-~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+ .+.+.... .++..++. ...+++.+.+.++-...........+++|+++++++|.++......|.++++|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 4 33333221 22222221 12333444443321111111111124455555555555544444445555555555
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCC-EEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK-QIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
++..| +..... ..|.+|++ |+ .+++.+ .++...+..|.+|++|+.+
T Consensus 256 ~l~~n-i~~I~~------~aF~~~~~-------------------------L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 256 KLPHN-LKTIGQ------RVFSNCGR-------------------------LAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp ECCTT-CCEECT------TTTTTCTT-------------------------CCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred ECCcc-cceehH------HHhhCChh-------------------------ccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 55443 333222 33444444 44 444444 3433344566667777777
Q ss_pred ccccccccccCchhccCCCCCCeee
Q 047097 399 TIDRNQLTGTIPPEIGELKNLQLLN 423 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
++++|+++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777644455677777777665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=148.78 Aligned_cols=281 Identities=12% Similarity=0.083 Sum_probs=164.1
Q ss_pred CcEEEEEcCCCCCceecCccccC-CCCCCEEECCCCcCc--ccCCcccCCCCCCCEEEccCCcCCCCCCccccC------
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGN-LSFLRYINLANNGFL--GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSR------ 144 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------ 144 (443)
.++++|+++++ +...-...+.. +++|++|||++|.+. ......+ +.++.+.+..+.+ .+..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccc
Confidence 45677777653 11111122333 788999999999887 2222222 2234444444432 2344555
Q ss_pred --CCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcC----cccc-ccccCCC
Q 047097 145 --CSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL----WGRI-DSLVQLR 217 (443)
Q Consensus 145 --l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~----~~~~-~~l~~l~ 217 (443)
+++|+.+++.+ .++...+.+|.++++|+.++++.|.+....+..|..+.++..+....+.. .... ..|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888888 77766667788888888888888888766677788777777776655321 1111 3455555
Q ss_pred cCc-EEecccCcCCCCCChhhh----CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCC
Q 047097 218 NLL-LLDIAFNHFSGTIPPPIF----NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 218 ~L~-~L~l~~n~~~~~~~~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 292 (443)
.|+ .+.+.... .++..+. ...+++.+.+.++-.. .-...+...+++|+.+++.+|+++...+..|.+|++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 565 34433221 1222211 2344555555544221 1111122236677777777777765555566777777
Q ss_pred CEEecccCcccccCCccccCCCCCC-EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 293 EMIEFSRNQFSGRVSVDFSRLKNLS-WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
+++++.+| ++...+..|.++++|+ .+++.. .++.... ..|.+|++|+.+++++|.++ .++...+..+++|
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L 323 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS 323 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence 77777766 5555566677777777 777766 5555444 56677777777777777776 4444444334667
Q ss_pred CEEe
Q 047097 372 KQIA 375 (443)
Q Consensus 372 ~~L~ 375 (443)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=134.23 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=88.1
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+.. ++++|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 45544432 6777777777776333322334677777777777777766667777777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------HHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777666667777777777777777776655 456666777777777777765544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=129.77 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKL- 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhC-
Confidence 34444444444444 33444444455555555555554432 124455666666666666665455544443
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCc---hhccCCCCCCeeecccCcCccccCc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIP---PEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
++|+.|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 6677777777777643 22567777777777777777773333 36777777888888877776 4443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-16 Score=129.97 Aligned_cols=131 Identities=20% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCCEEECCCCcCc-ccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFL-GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555666555554 34555555555555555555555432 4444455555555555554433443344444444444
Q ss_pred ccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcCcEEecccCcCCCCCC---hhhhCCCCCcEEEcccC
Q 047097 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIP---PPIFNISSLEVISLSEN 251 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n 251 (443)
+++|.++ ..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 102 Ls~N~l~------------------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLK------------------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCC------------------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccC------------------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 4444443 322 344445555555555555553332 24555556666666655
Q ss_pred CCC
Q 047097 252 RFT 254 (443)
Q Consensus 252 ~~~ 254 (443)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=133.49 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=109.6
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCc-ccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPP-QIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
+.++++++.++ .+|..+.. ++++|++++|.+++..+. .|+.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45778888875 45554433 899999999999865554 488999999999999999988888999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 210 (443)
|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9999888888999999999999999999888888888888888888888776543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=138.03 Aligned_cols=332 Identities=12% Similarity=0.010 Sum_probs=224.4
Q ss_pred CceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCcc
Q 047097 86 IGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAA 165 (443)
Q Consensus 86 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 165 (443)
++.....+|.++++|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44455567888999999999754 66555678999999999999754 55345667888888888877654 33344456
Q ss_pred ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 166 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
|.++..++....... ......++.++++|+.+.+..+...-....|..+.+|+.+.+..+ ++......+..+..|+.
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 666654443333222 223345688888899988876543323367788888888888765 33233456677888888
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+.+..+.. .+....+ ....|+.+.+... ++..-...+..+..++.+.+..+... .....|..+..++.+....+.
T Consensus 213 i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 213 MEFPNSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CCCCTTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred eecCCCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 77766543 2233333 5567888877644 33234456778888888888776443 455567888888888876654
Q ss_pred CCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+.. ..+..+.+|+.+.+.++ ++ .++...+..+++|+.+++..+ ++......|.+|++|+.+++..+ +
T Consensus 288 i~~---------~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 288 VPE---------KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp ECT---------TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ecc---------ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 322 45678888999988765 44 455544444588999998754 55455677889999999999876 6
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+.....+|.+|++|+.+++..+ +. .+...|.+|++|
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 6455668999999999999765 33 445678777654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=126.25 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l- 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC- 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhC-
Confidence 45566666666665 45555556666666666666666543 235566777777777777775566655554
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCc---hhccCCCCCCeeeccc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIP---PEIGELKNLQLLNLGG 426 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~ 426 (443)
++|+.|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6788888888887753 34677888888888888888885444 4677888888888763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=124.72 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=48.7
Q ss_pred CCCCEEECCCCcCc-ccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFL-GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45565566666666666666666533 4455555666666665555544444444455555555
Q ss_pred ccccccC
Q 047097 177 IFHNHIT 183 (443)
Q Consensus 177 l~~n~l~ 183 (443)
+++|.++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 5555544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-14 Score=132.64 Aligned_cols=268 Identities=12% Similarity=0.086 Sum_probs=190.2
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcE
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 174 (443)
..+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .++...+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34567777777653 444556677775 6888888765 554555667664 688888875 566566678888889999
Q ss_pred EeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
+++..|.++..-...+. +.+|+.+.+..+ +.... ..|..+++|+.+++..+ ++..-...|.. ++|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99988888744444454 688888888755 44444 78888888999988864 43233344444 788998884 445
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCc-----ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFT-----GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+ .++...+.++++|+.+++.++.+. ...+..|.+|++|+.+.+.+ .++......|.++++|+.+.+..+ ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 5 777777778899999998887664 34566788899999999984 476666778889999999999654 555
Q ss_pred cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc
Q 047097 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS 382 (443)
Q Consensus 329 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 382 (443)
... ..+.+| +|+.+++++|......+..+..+...++.|++..+.+.
T Consensus 337 I~~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INF------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECT------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcH------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 444 668888 89999999987763333344444356788888776543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-14 Score=133.15 Aligned_cols=266 Identities=10% Similarity=0.086 Sum_probs=188.2
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 120 RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 120 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
.+..++.+.+.+ .++......|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346677777754 3443455667664 7888888766 55455566776 4788888876 5555566778888889999
Q ss_pred EccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 200 DVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
++..|.+...+ ..|. ..+|+.+.+..+ ++..-...|..+++|+.+++..+ ++ .++...+.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 99888887777 4444 578888888744 55445566778888888888765 44 677777744 788888884 445
Q ss_pred cccCCccccCCCCCCEEecccCccc-----ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccC
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFS-----GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~ 353 (443)
+..-...|.+|++|+.+.+.+|.+. ......|.++++|+.+++. +.++.... ..+.+|++|+.+.+..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~------~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ------GLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT------TTTTTCCSCCEEEECT
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh------hhhcCCCCccEEEECc
Confidence 5455677888888999988887664 3456678888889988887 44655554 6788888899888865
Q ss_pred CcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc-CCCeecccccccc
Q 047097 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV-SLNWLTIDRNQLT 406 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~ 406 (443)
+ ++ .+....+..+ +|+.+++++|.+.......|.+++ +++.|.+..+.+.
T Consensus 333 ~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 55 4444444444 788888888877755556666664 6778887776544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=130.88 Aligned_cols=323 Identities=11% Similarity=0.054 Sum_probs=232.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++++.+.. .++.....+|.++++|+.+++..+ ++..-..+|.++..|+.+.+..+ +.......|.++..++....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 5789999975 477677788999999999999765 55455678999999998877654 33344556666655444433
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.... .....+|.++.+|+.+.+..+... .....+.++.+|+.+.+..+...-....+..+..|+.+.+..+... +
T Consensus 148 ~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred cccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--e
Confidence 3322 234567889999999999765432 4556788899999999887632222267888888888887765432 3
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
........+|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+....+.+. ...|..+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~ 296 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGC 296 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccc
Confidence 3445566789988886543 3 555666668899999999877544 55667888899999888766442 3457889
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
.+|+.+.+..+ ++.... ..+.+|.+|+.+++.++ ++ .+....+..+.+|+.+.+..+ ++..-...|.+|+
T Consensus 297 ~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccc-cceech------hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 99999999754 544444 67889999999999754 55 455555555689999999876 6655667899999
Q ss_pred CCCeeccccccccccCchhccCCCCCCee
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLL 422 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999765 33 455678889888765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=122.69 Aligned_cols=126 Identities=23% Similarity=0.260 Sum_probs=91.6
Q ss_pred EEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
.++++++.++. +|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46777777763 444332 57888888888887 667778888888888888888886666778888888888888888
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCc
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 207 (443)
+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 87666667777778888888877777544445666666666666666543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=121.84 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=81.5
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .+++++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 35566666655 344433 245667777777666 566433 3666777777777777655556666777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
|.+++..+..|..+++|++|++++|.++...+ ..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh------hhhhcCccccEEEeCCCCee
Confidence 77776666666777777777777777765544 44566677777777777665
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=119.33 Aligned_cols=132 Identities=19% Similarity=0.300 Sum_probs=74.4
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 233222 245666666666665 44444433556666666666666644444455666666666666
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH------HHhcCCcccCEEEecCCCeeccCc
Confidence 66665555555666666666666666654443 334555666666666666664433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=123.08 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC 343 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 343 (443)
.+++|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcC
Confidence 4566677777777666 3343222333666666666666643 345556666666666666554433 223445
Q ss_pred CCCCEEEccCCcccccCch--hHHhhccCCCEEeCcCCcCcccCchh----hhcccCCCeecccccccc
Q 047097 344 SKLERLYFNRNRFEGELPH--SVANLSSTIKQIAMGRNRISGTIPPE----IRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~ 406 (443)
++|++|++++|.++ .+|. .+..+ ++|+.|++++|.++ .+|.. +..+++|+.|++++|.+.
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l-~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASL-KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGC-TTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcC-CCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555555555554 3333 23332 44555555555554 23332 444455555555554443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-14 Score=117.51 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=93.3
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccc
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 158 (443)
+++++++++. +|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 3444445543 23222 36889999999988866666778888999999999988866566678888888888888888
Q ss_pred eeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc
Q 047097 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209 (443)
Q Consensus 159 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 209 (443)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 866666678888888888888888755444556677777777777766543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=120.26 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=63.2
Q ss_pred cCCCCCCEEecccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 287 SNASRLEMIEFSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
..+++|++|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++ +|..++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~-~~~~~~ 84 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICR-IGEGLD 84 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccc-cCcchh
Confidence 344555555555555552 222 2222 2555555555555432 124445555555555555552 332221
Q ss_pred hhccCCCEEeCcCCcCcccCch--hhhcccCCCeeccccccccccCchh----ccCCCCCCeeecccCcC
Q 047097 366 NLSSTIKQIAMGRNRISGTIPP--EIRKLVSLNWLTIDRNQLTGTIPPE----IGELKNLQLLNLGGNFL 429 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l 429 (443)
...++|+.|++++|.++ .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.||+++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 11245555555555554 3333 4555555555555555555 34442 45555555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-16 Score=135.59 Aligned_cols=152 Identities=23% Similarity=0.309 Sum_probs=106.5
Q ss_pred CCccEEeCCCCcCcccCCc------cccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 266 PNLRQLSPNGNNFTGSIPV------SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. + ..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~------~~ 88 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-E------NL 88 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-S------SH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-c------ch
Confidence 3444444444444444443 66777777777777777775 44 677777888888888777632 2 33
Q ss_pred hcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCc-hhhhcccCCCeeccccccccccCch-------
Q 047097 340 LTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP-PEIRKLVSLNWLTIDRNQLTGTIPP------- 411 (443)
Q Consensus 340 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~------- 411 (443)
+..+++|++|++++|.+++ +| .+..+ ++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 4455788888888888884 45 45554 789999999998885322 4688899999999999998866554
Q ss_pred ---hccCCCCCCeeecccCcCcc
Q 047097 412 ---EIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 412 ---~~~~l~~L~~L~l~~n~l~~ 431 (443)
.+..+++|+.|| +|+++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 277889999887 777764
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-15 Score=131.70 Aligned_cols=138 Identities=23% Similarity=0.304 Sum_probs=116.4
Q ss_pred ccCCCCCCEEecccCcccccCCc------cccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSV------DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++.. .+..+++|++|++++|.++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-c
Confidence 44556788888888888887776 7899999999999999997732 3667899999999999999 7
Q ss_pred CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCc-hhccCCCCCCeeecccCcCccccCc
Q 047097 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP-PEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|..+..+ ++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 85 l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 85 IENLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSSHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccchhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88766654 789999999999995 55 68999999999999999984222 4788999999999999999888765
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-11 Score=115.10 Aligned_cols=320 Identities=10% Similarity=0.055 Sum_probs=183.7
Q ss_pred ecCccccCCC-CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCc---CCCCCCccccCCCCCcEEecccccceeccCc
Q 047097 89 TLSPYVGNLS-FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS---FSGTIPTNLSRCSNLIELFVDTNYLVGEIPA 164 (443)
Q Consensus 89 ~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 164 (443)
....+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3445666774 5888888754 555567788889999999887653 54444566788888888877654 4434556
Q ss_pred cccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCc
Q 047097 165 AIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLE 244 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 244 (443)
+|..+.+|+.+.+..+. .......+..+..|+.+.+..+...-....|.. ..|+.+.+..+... .....+..+.+++
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhhccccccccccee-eeecccceecccccccccccceeeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 77888888888886543 324456677888888888876532222244433 56777777654322 2334566677777
Q ss_pred EEEcccCCCCccCchhhhc-------------CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc
Q 047097 245 VISLSENRFTGSLPVDTGV-------------NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 245 ~L~l~~n~~~~~~~~~~~~-------------~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
.......... .+....+. ....+..+.+.. .++..-...|..|..|+.+.+..+... .....|.
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 209 TITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp EEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred eecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 7666544332 11111110 112223333322 122223345667777777777654332 4445567
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
+++.|+.+.+. +.++.... ..+.+|.+|+.+++..+ ++ .+....+..+.+|+.+.+..+ ++..-...|.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TCTTCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred cccccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 77777777775 33433333 55677777777777653 43 344444444567777777543 44344556777
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777777766443 13556667777777665543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-14 Score=135.19 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=15.9
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 279 (443)
++|++|++++|.+.+.....+...+++|++|++++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 344455555544432222222222334444444444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=107.15 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356777777764 44434 267788888888887666777777778888888888777555555677777777777777
Q ss_pred cceeccCccccCCCCCcEEeccccccC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
++++..+..|..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777554455667777777777777665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=107.60 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=80.2
Q ss_pred CcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECC
Q 047097 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+++++++|.++ .+|..+ .+++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467777777776 666543 3677888888888876667777788888888888888887666667788888888888
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 323 INNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
+|.+++..+ ..+..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPR------GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCH------HHhcCCCCCCEEEeCCCCCCCC
Confidence 888876655 4567778888888888887743
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-14 Score=135.80 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=130.8
Q ss_pred CCCCcEEEcccCCCCccCch----hhhcCCCCccEEeCCCCcCcccCCccc-cCCCCCCEEecccCcccccCCccc----
Q 047097 240 ISSLEVISLSENRFTGSLPV----DTGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDF---- 310 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~---- 310 (443)
.+.|++|++++|.++..... .+....++|++|++++|.++......+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998742222 222234799999999999875433333 345688999999999976544443
Q ss_pred -cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCch----hHHhhccCCCEEeCcCCcCccc-
Q 047097 311 -SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH----SVANLSSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 311 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~----~~~~~~~~L~~L~l~~n~l~~~- 384 (443)
...++|++|++++|.++.... ..+...+..+++|++|+|++|.+++.... .+.. .+.|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV--AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH--HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCCCCChHHH--HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHH
Confidence 356889999999998865322 22345667889999999999998854432 2333 36899999999999864
Q ss_pred ---CchhhhcccCCCeeccccccccccCchhccCCC---C--CCeee--cccCcCccc
Q 047097 385 ---IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK---N--LQLLN--LGGNFLQGS 432 (443)
Q Consensus 385 ---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~---~--L~~L~--l~~n~l~~~ 432 (443)
++..+...++|++|+|++|.|++.....+..+. . |+.+. +.+|.++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 445566778999999999999876655554432 1 66777 777777644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-12 Score=106.16 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=78.3
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.+++++|.+. .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777776 677654 36778888888888766677777888888888888888766665667788888888888
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
|.+++..+ ..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~------~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPR------GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCT------TTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCH------HHhccccCCCEEEeCCCCcc
Confidence 88876554 45677788888888888877
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=106.07 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=74.1
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45788888775 4444443 67888888888888777777888888888888888887544445677777777777777
Q ss_pred cceeccCccccCCCCCcEEeccccccC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777444444667777777777777665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-10 Score=109.83 Aligned_cols=308 Identities=10% Similarity=0.100 Sum_probs=202.3
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCc---CcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNG---FLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
++++.+... ++.....+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ +.......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 566666543 555666789999999999998763 55455678999999998887654 4435566788999999999
Q ss_pred cccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCC
Q 047097 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+- .......|..+.+|+.+.+..+ +...-..++. ..+|+.+.+..+........+..+..++............
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 97543 3355567889999999998765 3323334444 4678888887665443346677777777776655433211
Q ss_pred CChh--------------hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecc
Q 047097 233 IPPP--------------IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 233 ~~~~--------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
... ......+..+.+.. .+. .+....+..+..|+.+.+..+... .-...|.+++.|+.+.+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 221 -DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp -SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred -cceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 110 11122333444322 222 444556667888999988765443 455667889999999986
Q ss_pred cCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcC
Q 047097 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGR 378 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~ 378 (443)
+.++......|.++.+|+.+++..+ ++.... ..+.+|.+|+.+.+..+ ++ .+....+..+++|+.+++.+
T Consensus 297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~------~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 297 -SRITELPESVFAGCISLKSIDIPEG-ITQILD------DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESS
T ss_pred -CcccccCceeecCCCCcCEEEeCCc-ccEehH------hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECC
Confidence 4555566677889999999999754 444444 67889999999999754 55 56665555568999999988
Q ss_pred CcCcccCchhhhcccCCCeeccccccc
Q 047097 379 NRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 379 n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+... ...+..+.+|+.+.+..+.+
T Consensus 367 ~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CHHH---HHTCBCCCCC----------
T ss_pred ceee---hhhhhccCCCCEEEeCCCCE
Confidence 7543 24567788899888876654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-11 Score=112.14 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=103.8
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc--CCCCCCEEECCC--CcCCCcCCCchhhhhh
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS--RLKNLSWLNMGI--NNLGTGTANELDFINL 339 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~~~~ 339 (443)
.+|+|+.|.+++|.-. .++. + ..++|++|++..+.+.......+. .+++|+.|+|+. +...+.. ...++...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-DMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-CGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-hHHHHHHH
Confidence 6678888888776311 2232 3 367888888888777654433333 678888888753 2211111 00011112
Q ss_pred h--cCCCCCCEEEccCCcccccCchhHHh--hccCCCEEeCcCCcCccc----CchhhhcccCCCeeccccccccccCch
Q 047097 340 L--TNCSKLERLYFNRNRFEGELPHSVAN--LSSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTIDRNQLTGTIPP 411 (443)
Q Consensus 340 l--~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~ 411 (443)
+ ..+++|++|++.+|.+.+..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|.+++....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 35789999999999988655555543 247899999999998874 344456789999999999998866555
Q ss_pred hccC-CCCCCeeecccCc
Q 047097 412 EIGE-LKNLQLLNLGGNF 428 (443)
Q Consensus 412 ~~~~-l~~L~~L~l~~n~ 428 (443)
.+.. + ...+++++++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 5543 3 4568888876
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=96.96 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=86.0
Q ss_pred hcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
+....+++.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +..... ..+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~------~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY------LLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT------TTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc------cccc
Confidence 335566666666543 23233445666777777777554 44444555667777777777543 333222 4566
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNL 419 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 419 (443)
+|++|+.+.+.++.++ .++...+..+.+|+.+.+..+ ++..-...|.+|++|+.+.+..+ ++.....+|.+++.+
T Consensus 284 ~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7777777777776666 444444444567777777543 44344456777888888877654 443334566665433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=106.75 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=50.7
Q ss_pred EecccC-cCCCCCChhhhCCCCCcEEEccc-CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 222 LDIAFN-HFSGTIPPPIFNISSLEVISLSE-NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 222 L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
++++++ .++ .+|. +..+++|++|++++ |.+. .++...+..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 444 3444 55555555555553 5554 33333333555555555555555554444555555555555555
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
|++++..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555543333333333 555555555443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=107.17 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred EcCCC-CCceecCccccCCCCCCEEECCC-CcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 80 DLRNQ-SIGGTLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 80 ~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
+.+++ .+++ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 5654 566 88889999999986 88887777888999999999999999988778888889999999999998
Q ss_pred ceeccCccccCCCCCcEEeccccccC
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
+++..+..+..+. |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8854444455444 888888888776
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=95.63 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=183.3
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+....+|+.+.+.. .++..-..+|.++.+|+.+.+..+ ++......|.++ +|+.+.+..+ ++.....+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44556778877754 344445567888888888888643 443445556665 5666666433 33222334433 3677
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
.+.+..+-.. .....+.++ +++.+.+..+...-....+..+..++...+..+.......... . .+..
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------~--~~~~ 183 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------L--YNKN 183 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------E--EETT
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccce---------e--cccc
Confidence 7766543221 222233332 3444444332111111334444444444443322110000000 0 0000
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
. ... ..+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++....
T Consensus 184 ~-~~~-~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~-- 256 (379)
T 4h09_A 184 K-TIL-ESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS-- 256 (379)
T ss_dssp S-SEE-EECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--
T ss_pred c-cee-ccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--
Confidence 0 001 11113445555555443222 34455677888999988655 44455667888999999999765 444444
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhc
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI 413 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 413 (443)
..+..+.+|+.+.+..+ ++ .++...+..+++|+.+.+.++.++..-...|.+|.+|+.+.|..+ ++.....+|
T Consensus 257 ----~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 329 (379)
T 4h09_A 257 ----FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF 329 (379)
T ss_dssp ----TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred ----cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh
Confidence 56888999999999754 44 455555555689999999999888666778999999999999755 553456689
Q ss_pred cCCCCCCeeecccCcCccccCccccCCC
Q 047097 414 GELKNLQLLNLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 414 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (443)
.+|++|+.+.+..+ ++..-..+|.+++
T Consensus 330 ~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 330 KNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999999999754 5544455666654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-10 Score=105.47 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh--cCCCCCCEEEccC--Cccc
Q 047097 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL--TNCSKLERLYFNR--NRFE 357 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~Ls~--n~l~ 357 (443)
+...+..+|.|++|++++|.-. ..+. + .+++|+.|++..+.+..... ..+ ..+|+|+.|+|+. +...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l------~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV------EDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH------HHHHHccCCCCcEEEEeccccccc
Confidence 4455677899999999988311 2222 3 38899999999887654221 233 3789999999863 2211
Q ss_pred cc-----CchhHH-hhccCCCEEeCcCCcCcccCchhhh---cccCCCeeccccccccccC----chhccCCCCCCeeec
Q 047097 358 GE-----LPHSVA-NLSSTIKQIAMGRNRISGTIPPEIR---KLVSLNWLTIDRNQLTGTI----PPEIGELKNLQLLNL 424 (443)
Q Consensus 358 ~~-----~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l 424 (443)
+. +...+. ..+++|+.|++++|.+.+..+..+. .+++|+.|+|+.|.+.+.. +..+..+++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 2247999999999999865544443 5789999999999998643 444456799999999
Q ss_pred ccCcCccccCcc
Q 047097 425 GGNFLQGSIPSS 436 (443)
Q Consensus 425 ~~n~l~~~~p~~ 436 (443)
++|.+++..-..
T Consensus 315 ~~n~i~d~~~~~ 326 (362)
T 2ra8_A 315 KYNYLSDEMKKE 326 (362)
T ss_dssp CSBBCCHHHHHH
T ss_pred CCCcCCHHHHHH
Confidence 999998654433
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-09 Score=88.86 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhh---ccCCCEEeCcCCcCccc----CchhhhcccCCCeecc--cccccccc
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANL---SSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTI--DRNQLTGT 408 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~~~~~ 408 (443)
..+...++|++|+|++|.+.+.....+... .+.|+.|++++|.+.+. +...+...++|++|+| ++|.+...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 344445555566666555553322222211 24566666666666543 3444556667777777 66776643
Q ss_pred ----CchhccCCCCCCeeecccCcCc
Q 047097 409 ----IPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 409 ----~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+.+.+...+.|+.|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455567777777777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-08 Score=84.79 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=45.9
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhh---ccCCCEEeC--cCCcCccc-
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANL---SSTIKQIAM--GRNRISGT- 384 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l--~~n~l~~~- 384 (443)
...++|++|++++|.+..... ..+...+...++|++|+|++|.+.+..-..+... .+.|+.|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 334455555555555432211 1122334444556666666665554322222111 245666666 55665543
Q ss_pred ---CchhhhcccCCCeecccccccc
Q 047097 385 ---IPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 385 ---~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+...+...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455567777777777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-07 Score=84.22 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=55.0
Q ss_pred cCCCCCCEEEccCCcccc--cCchhHHhhccCCCEEeCcCCcCcccCchhhhccc--CCCeeccccccccccCch-----
Q 047097 341 TNCSKLERLYFNRNRFEG--ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV--SLNWLTIDRNQLTGTIPP----- 411 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~----- 411 (443)
..+++|+.|+|++|.+++ .+|..+..+ ++|+.|++++|.+++. ..+..+. +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457788888888888875 344444454 7788888888888754 3344444 788888888888765552
Q ss_pred --hccCCCCCCeee
Q 047097 412 --EIGELKNLQLLN 423 (443)
Q Consensus 412 --~~~~l~~L~~L~ 423 (443)
.+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 356677777765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=77.92 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=52.9
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc--CCCEEeCcCCcCcccCc--
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS--TIKQIAMGRNRISGTIP-- 386 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--~L~~L~l~~n~l~~~~~-- 386 (443)
..+++|+.|+|++|.+++... ++..+..+++|+.|+|++|.+++. ..+..+ . .|+.|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~----l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD----MSSIVQKAPNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG----GTTHHHHSTTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCcc----chhHHhhCCCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcc
Confidence 457778888888887766321 113455677888888888877743 223332 2 67788888888776554
Q ss_pred -----hhhhcccCCCeec
Q 047097 387 -----PEIRKLVSLNWLT 399 (443)
Q Consensus 387 -----~~l~~l~~L~~L~ 399 (443)
..+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 2356777777775
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-07 Score=75.82 Aligned_cols=85 Identities=6% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCc-ccccCchhHHhh---ccCCCEEeCcCCc-CcccCchh
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNR-FEGELPHSVANL---SSTIKQIAMGRNR-ISGTIPPE 388 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~---~~~L~~L~l~~n~-l~~~~~~~ 388 (443)
-+|+.||++++.++.... ..+..+++|++|+|++|. +++..-..+... ++.|+.|++++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 468889998888765443 456788888999998884 775544445442 3468888888874 77766666
Q ss_pred hhcccCCCeecccccc
Q 047097 389 IRKLVSLNWLTIDRNQ 404 (443)
Q Consensus 389 l~~l~~L~~L~l~~n~ 404 (443)
+..+++|+.|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 7778888888888874
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.3e-07 Score=74.39 Aligned_cols=84 Identities=6% Similarity=0.042 Sum_probs=42.8
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEECCCCc-CCCcCCCchhhhhhhcCC----CCCCEEEccCCc-ccccCchh
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN-LGTGTANELDFINLLTNC----SKLERLYFNRNR-FEGELPHS 363 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~----~~L~~L~Ls~n~-l~~~~p~~ 363 (443)
..|++|+++++.+++.....+..+++|+.|++++|. ++.... ..+..+ ++|++|+|++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 355666666666555544455556666666666553 332111 223332 356666666653 55444444
Q ss_pred HHhhccCCCEEeCcCCc
Q 047097 364 VANLSSTIKQIAMGRNR 380 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~ 380 (443)
+..+ ++|+.|++++|.
T Consensus 135 L~~~-~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHF-RNLKYLFLSDLP 150 (176)
T ss_dssp GGGC-TTCCEEEEESCT
T ss_pred HhcC-CCCCEEECCCCC
Confidence 4442 556666666553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=2e-05 Score=66.23 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=31.0
Q ss_pred cCCCCCCEEecccC-ccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 287 SNASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 287 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
..-+.|++|++++| .+.+. +...+..-+.|+.|+|++|.+...... .+...+..-+.|++|+|+.|.+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCH
Confidence 34455666666553 44322 122233444555555555555432211 122334444455555555555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=5.9e-05 Score=63.32 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCCCccEEeCCCC-cCcc----cCCccccCCCCCCEEecccCcccccCCcc----ccCCCCCCEEECCCCcCCCcCCCch
Q 047097 264 NLPNLRQLSPNGN-NFTG----SIPVSLSNASRLEMIEFSRNQFSGRVSVD----FSRLKNLSWLNMGINNLGTGTANEL 334 (443)
Q Consensus 264 ~~~~L~~L~l~~n-~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.-+.|++|++++| .+.. .+...+...+.|++|+|++|.+.+..... +..-+.|+.|+|+.|.++.... .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga--~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--A 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--H
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--H
Confidence 3445555555553 4431 12233344455555555555554332222 2234555555555555543221 1
Q ss_pred hhhhhhcCCCCCCEEEccC
Q 047097 335 DFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 335 ~~~~~l~~~~~L~~L~Ls~ 353 (443)
.+...+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2223444444555555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0021 Score=50.18 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred CEEEccCCccc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc
Q 047097 347 ERLYFNRNRFE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 347 ~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
..++.+++.++ ..+|..+ +++++.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46778887775 3566443 356888888888888655566778888888888888765
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.024 Score=44.11 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=15.1
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
+++|+|++|+++...+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 443 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-26 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 0.001 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 107 bits (266), Expect = 1e-26
Identities = 82/307 (26%), Positives = 125/307 (40%), Gaps = 12/307 (3%)
Query: 31 NETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVIC--GRRHQRVTRLDLRNQSI 86
N D+ ALL IK L +P SSW + + C W GV+C + RV LDL ++
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 87 GG--TLSPYVGNLSFLRYINLANNGFL-GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLS 143
+ + NL +L ++ + L G IPP I + L L +++ + SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA-FDVR 202
+ L+ L N L G +P +I L L + N I+G +P S G+ S L +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 203 ENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262
N L G+I NL +D++ N G + + + I L++N L
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322
N L N G++P L+ L + S N G + L+
Sbjct: 243 SKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299
Query: 323 INNLGTG 329
N G
Sbjct: 300 NNKCLCG 306
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 69.4 bits (168), Expect = 1e-13
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 16/273 (5%)
Query: 167 GGLFKLERLFIFHNHITG--QLPASIGNLSSLLAFDVR--ENILWGRIDSLVQLRNLLLL 222
+++ L + ++ +P+S+ NL L + N++ ++ +L L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 223 DIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI 282
I + SG IP + I +L + S N +G+LP + +LPNL ++ +GN +G+I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAI 165
Query: 283 PVSLSNASRLEM-IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341
P S + S+L + SRN+ +G++ F+ L G + N
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401
L F+ + + +L + NRI GT+P + +L L+ L +
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRN---------NRIYGTLPQGLTQLKFLHSLNVS 276
Query: 402 RNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434
N L G IP + G L+ + N P
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 48.2 bits (113), Expect = 8e-07
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236
+N I G LP + L L + +V N L G I L+ + A N P P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 55 WNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI 114
+ + + T+ ++ VG L ++L NN G +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 115 PPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIP 163
P + + L L +S N+ G IP N + P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.8 bits (190), Expect = 1e-16
Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 29/274 (10%)
Query: 107 NNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI 166
++ L ++P + L L NN + + NL L + N + P A
Sbjct: 18 SDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75
Query: 167 GGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAF 226
L KLERL++ N + L L + + + + + ++ L
Sbjct: 76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
Query: 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL 286
SG + L I +++ T ++P P+L +L +GN T SL
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASL 191
Query: 287 SNASRLEMIEFSRNQFSG-----------------------RVSVDFSRLKNLSWLNMGI 323
+ L + S N S +V + K + + +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251
Query: 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357
NN+ +N+ T + + N +
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.5 bits (166), Expect = 2e-13
Identities = 50/280 (17%), Positives = 90/280 (32%), Gaps = 20/280 (7%)
Query: 62 CQWTGVICGRRH---------QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLG 112
C V C LDL+N I NL L + L NN
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 113 EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKL 172
P LE L LS N L + + + + + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 173 ERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT 232
E L +G + + L + + + L +L L + N +
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV 186
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+ +++L + LS N + + N P+LR+L N N +P L++ +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244
Query: 293 EMIEFSRNQFSGRVSVDF------SRLKNLSWLNMGINNL 326
+++ N S S DF ++ + S +++ N +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.7 bits (125), Expect = 3e-08
Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 38/212 (17%)
Query: 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+P + ++ L N+ T + NL NL L N + P + + +
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351
LE + S+NQ L+ L I + N L+ + ++ +
Sbjct: 81 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN------ 134
Query: 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP 411
+ SG + + L+++ I +T TIP
Sbjct: 135 --------------------------PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 167
Query: 412 EIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
+ +L L+L GN + +SL L L
Sbjct: 168 GL--PPSLTELHLDGNKITKVDAASLKGLNNL 197
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.6 bits (161), Expect = 1e-12
Identities = 70/385 (18%), Positives = 125/385 (32%), Gaps = 40/385 (10%)
Query: 56 NNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIP 115
+ T + +VT L I ++ V L+ L IN +NN P
Sbjct: 26 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP 83
Query: 116 -------------PQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI 162
+ + + ++ L
Sbjct: 84 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143
Query: 163 PAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLL 222
+ I L L L + NL++L D+ N + +L NL L
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESL 202
Query: 223 DIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI 282
N S P I ++L+ +SL+ N+ + T +L NL L N +
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLA 257
Query: 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTN 342
P LS ++L ++ NQ S + N+L+ I+ ++N
Sbjct: 258 P--LSGLTKLTELKLGANQISN----------ISPLAGLTALTNLELNENQLEDISPISN 305
Query: 343 CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402
L L N P V++L+ ++++ N++S + L ++NWL+
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSD--VSSLANLTNINWLSAGH 360
Query: 403 NQLTGTIPPEIGELKNLQLLNLGGN 427
NQ++ P + L + L L
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 68/387 (17%), Positives = 130/387 (33%), Gaps = 47/387 (12%)
Query: 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS 133
+ L ++ T+S +L + + G + I + + L + SNN
Sbjct: 22 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQ 77
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITG--------- 184
+ P L + L+++ ++ N + P A LF
Sbjct: 78 LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 185 -------QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPI 237
+ + + L L L LDI+ N + +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVL 193
Query: 238 FNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297
+++LE + + N+ + P+ L NL +LS NGN +L++ + L ++
Sbjct: 194 AKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248
Query: 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357
+ NQ S S L L+ L +G N + ++ + L L
Sbjct: 249 ANNQISN--LAPLSGLTKLTELKLGANQISN-----------ISPLAGLTALTNLELNEN 295
Query: 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417
S + + + + N IS P + L L L N+++ + L
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLT 351
Query: 418 NLQLLNLGGNFLQGSIP-SSLGNLTLL 443
N+ L+ G N + P ++L +T L
Sbjct: 352 NINWLSAGHNQISDLTPLANLTRITQL 378
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 61.9 bits (149), Expect = 5e-11
Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 16/222 (7%)
Query: 55 WNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI 114
++ + + + + + L N I L+ L ++L N
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-- 233
Query: 115 PPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER 174
+ L L L+NN S P LS + L EL + N + P + GL L
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 289
Query: 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234
L + N + P I NL +L + N + I + L L L A N S
Sbjct: 290 LELNENQLEDISP--ISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--V 344
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
+ N++++ +S N+ + P+ NL + QL N
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 46/273 (16%), Positives = 104/273 (38%), Gaps = 18/273 (6%)
Query: 168 GLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN 227
L + + + ++T + + +L + + ID + L NL ++ + N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN 76
Query: 228 HFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
+ P+ N++ L I ++ N+ P+ NL L + + ++
Sbjct: 77 QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 288 NA-----SRLEMIEFSRNQFSGRVSVDFSRLKNLSWL-NMGINNLGTGTANELDFINLLT 341
N + + I S + +++ +L L N+ ++N++ I++L
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401
+ LE L N+ P + + + ++++ N++ + L +L L +
Sbjct: 195 KLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 402 RNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434
NQ++ P + L L L LG N + P
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP 280
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 17/234 (7%)
Query: 216 LRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275
L + + + + T+ ++ + + +D L NL Q++ +
Sbjct: 21 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 75
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL------SWLNMGINNLGTG 329
N T P L N ++L I + NQ + + ++ T
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 330 TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI 389
N +++ S L L + G + L++ + + + +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
KL +L L NQ++ P I NL L+L GN L+ +L +LT L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNL 243
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (154), Expect = 5e-12
Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 31/255 (12%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI--------------------- 114
R+ L I + L + L +N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 115 ----PPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF 170
P L L L P + L L++ N L L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHF 229
L LF+ N I+ + L SL + +N + + L L+ L + N+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 230 SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289
S + + +L+ + L++N + L++ + + S+P L+
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLAG- 270
Query: 290 SRLEMIEFSRNQFSG 304
++ + N G
Sbjct: 271 --RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 7e-10
Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 13/268 (4%)
Query: 103 INLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI 162
+ G L +P I + + L N S + C NL L++ +N L
Sbjct: 16 TSCPQQG-LQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 163 PAAIGGLFKLERLFIFHNHITGQL-PASIGNLSSLLAFDV-RENILWGRIDSLVQLRNLL 220
AA GL LE+L + N + PA+ L L + R + L L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 221 LLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280
L + N ++ +L + L NR + +P L +L +L + N
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAH 191
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340
P + + RL + N S + + L+ L +L + N +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-------VCDCRAR 244
Query: 341 TNCSKLERLYFNRNRFEGELPHSVANLS 368
+ L++ + + LP +A
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRD 272
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 8e-10
Identities = 45/291 (15%), Positives = 82/291 (28%), Gaps = 17/291 (5%)
Query: 144 RCSNLIELFVDTNYL-VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL-LAFDV 201
C N ++ + +P I +R+F+ N I+ AS +L + +
Sbjct: 7 VCYNEPKVTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLH 64
Query: 202 RENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNI-SSLEVISLSENRFTGSLPVD 260
+ + L L LD++ N ++ P F+ L + L L
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPG 123
Query: 261 TGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLN 320
L L+ L N + + L + N+ S F L +L L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 321 MGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNR 380
+ N + + + L ++ L + N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR-------LNDNP 236
Query: 381 ISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431
L +++ ++P L L L N LQG
Sbjct: 237 WVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 7/218 (3%)
Query: 217 RNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
+ + N S +L ++ L N + +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336
P + RL + R F L L +L + N L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----- 146
Query: 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN 396
+ + L L+ + NR + L S + ++ + +NR++ P R L L
Sbjct: 147 -DTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434
L + N L+ + L+ LQ L L N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 6/175 (3%)
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325
+++ +GN + S L ++ N + + F+ L L L++ N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385
+L L+ + EL + + ++ + + N +
Sbjct: 92 QLRSVDP-----ATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440
R L +L L + N+++ L +L L L N + P + +L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.001
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 8/163 (4%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340
++PV + + + I N+ S + F +NL+ L + N
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAF 76
Query: 341 TNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTI 400
T + LE+L + N + + + + + + R + P R L +L +L +
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 401 DRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
N L +L NL L L GN + + L L
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 5e-09
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 4/247 (1%)
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ L + + + ++ + + F+ ++ + LS + S
Sbjct: 6 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 64
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV--DFSRLKNLS 317
L+ LS G + I +L+ S L + S ++ S L
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124
Query: 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377
LN+ T ++ ++ ++L + +N + +L V + +
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184
Query: 378 RNRISGTIPPEIRKLVSLNWLTIDR-NQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436
+ E +L L L++ R + E+GE+ L+ L + G G++
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244
Query: 437 LGNLTLL 443
L L
Sbjct: 245 KEALPHL 251
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 38/251 (15%), Positives = 83/251 (33%), Gaps = 13/251 (5%)
Query: 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG 136
LDL +++ ++ + + + + F+ + + ++ + LSN+
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 137 -TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF--HNHITGQLPASIGNL 193
T+ LS+CS L L ++ L I + L RL + L + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 194 SSLLAFDVRENILWGRIDSLVQL-------RNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246
S L ++ + V + L L N + + +L +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 247 SLSENRFTGSLPVDTGVNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
LS++ + L L+ LS + + + L L+ ++ G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 306 VSVDFSRLKNL 316
+ + L +L
Sbjct: 241 LQLLKEALPHL 251
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 6e-08
Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 23/205 (11%)
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
++S ++ + T +LP D + L + N +L +RL +
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERL--------- 349
R + L L L++ N L + L RL
Sbjct: 64 RAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 350 -------YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402
+ + LP + + ++++++ N ++ + L +L+ L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 403 NQLTGTIPPEIGELKNLQLLNLGGN 427
N L TIP L L GN
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 41/209 (19%), Positives = 66/209 (31%), Gaps = 7/209 (3%)
Query: 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153
V ++ +N L +PP + + L LS N L + L +L
Sbjct: 6 VSKVASHLEVNCDKRN-LTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQL-- 60
Query: 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL 213
+ + G L L L + HN + + + + + +L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 214 VQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273
L L L + N P + LE +SL+ N T LP L NL L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL 179
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
N+ +IP + L N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.002
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443
E+ K+ S + D+ LT +PP++ K+ +L+L N L ++L T L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRL 57
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 35/179 (19%), Positives = 55/179 (30%), Gaps = 5/179 (2%)
Query: 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFS 135
T L L + + + L +NL + +++
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG---TLDLSHNQL 89
Query: 136 GTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS 195
++P L L V N L A+ GL +L+ L++ N + P +
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 196 LLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253
L + N L L L NL L + N TIP F L L N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF 238
H +T + L + D+ N L +L LR L +L + N +
Sbjct: 7 HKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVDGVA 62
Query: 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280
N+ L+ + L NR S + V+ P L L+ GN+
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 15/216 (6%)
Query: 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295
P +++ I+ ++ T ++ +L + LS G T +I + + L +
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68
Query: 296 EFSRNQF------SGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERL 349
E NQ + L N+ +T+ + L L
Sbjct: 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 350 YFNRN-RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408
+ + +++ L+ + + + L L L D N+++
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
Query: 409 IPPEIGELKNLQLLNLGGNFLQGSIP-SSLGNLTLL 443
P + L NL ++L N + P ++ NL ++
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 16/217 (7%)
Query: 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274
L N + + ++ + T+ ++ + +S T V L NL L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ---YLNNLIGLELK 71
Query: 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334
N T P+ + + + ++ S + + L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 335 DF-------INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387
I ++ + L L + + S + + N+IS P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL 424
+ L +L + + NQ++ P + NL ++ L
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 27/206 (13%), Positives = 71/206 (34%), Gaps = 20/206 (9%)
Query: 232 TIPPPIFNISSLEVIS------LSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS 285
T+P PI I S + + L + T ++ + L ++ Q+ N ++
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG-- 63
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSK 345
+ + + + N+ + + + +L+ + + +L +
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123
Query: 346 LERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI-------PPEIRKLVSLNWL 398
+ + + + E + N + I ++ + ++ + L L L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183
Query: 399 TIDRNQLTGTIPPEIGELKNLQLLNL 424
+ +N ++ + LKNL +L L
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLEL 207
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 49/311 (15%), Positives = 90/311 (28%), Gaps = 28/311 (9%)
Query: 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203
EL ++ L +P LE L N +T +LP +L
Sbjct: 36 LDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLK-------SL 83
Query: 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP----------IFNISSLEVISLSENRF 253
+ + +L L LL N+ +P + N S ++ L +
Sbjct: 84 LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143
Query: 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
+ + LP L+ L + + + L + + L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203
Query: 314 KNLSWLNMGINNLGT-GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK 372
L+ + N L T + + + ++ ++ ++ + S +
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263
Query: 373 QIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432
N S I SL L + N+L +P L+ L N L
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-E 318
Query: 433 IPSSLGNLTLL 443
+P NL L
Sbjct: 319 VPELPQNLKQL 329
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428
+++++ + N++ +P +L L N L +P +NL+ L++ N
Sbjct: 284 PSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPEL---PQNLKQLHVEYNP 335
Query: 429 LQG--SIPSSLGNLTL 442
L+ IP S+ +L +
Sbjct: 336 LREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.002
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
N+ S I + +L EL V N L+ E+PA +LERL NH+ ++P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLLL 221
NL L V N L D + +L +
Sbjct: 322 LPQNLKQL---HVEYNPLREFPDIPESVEDLRM 351
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.8 bits (91), Expect = 2e-04
Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 17/180 (9%)
Query: 62 CQWTGVICGRRH---------QRVTRLDLR-NQSIGGTLSPYVGNLSFLRYINLANNGFL 111
C+ T V C R T L L N+ + G L L + L N
Sbjct: 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 112 GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFK 171
G P ++ L L N L L + N + +P + L
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHF 229
L L + N +L+ + ++++ G + ++R++ + D+ + F
Sbjct: 128 LTSLNLASNPFNC-----NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.79 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.76 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.76 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.66 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.54 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.33 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.24 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.29 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.29 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.13 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.04 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.82 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.43 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.6e-40 Score=307.91 Aligned_cols=293 Identities=28% Similarity=0.463 Sum_probs=247.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--eeeeeeCCCC--CcEEEEEcCCCCCce--ecCccccCCCCCCE
Q 047097 29 NSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRH--QRVTRLDLRNQSIGG--TLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~~--~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~ 102 (443)
-|.++|++||++||+++.+|. .+++|..+.|||. |.||.|+... .||+.|+|+++.+.+ .+|..++++++|++
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence 488999999999999999875 6889998999995 9999998653 489999999999987 47899999999999
Q ss_pred EECCC-CcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccc
Q 047097 103 INLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 181 (443)
|+|++ |.++|.+|..|+++++|++|++++|++.+..+..+..+++|++++++.|.+.+.+|..+.++++++++++++|.
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence 99986 88999999999999999999999999998889889999999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCC-CEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 182 ITGQLPASIGNLSSL-LAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~~L-~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
+.+.+|..+..+..+ +.+++++|.+.+.. ..+..+. ...++++.+...+.+|..+..+++++.++++++.+.+.++
T Consensus 161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~- 238 (313)
T d1ogqa_ 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-
Confidence 999999998888776 78888888887766 4455444 4468888888877777777788888888888888775554
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
.+. .+++++.|++++|++++.+|..+.++++|++|++++|+++|.+|. ++++++|+.+++++|+.
T Consensus 239 ~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 239 KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp GCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred ccc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 333 677888888888888877888888888888888888888877774 56677777777777763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=8.7e-30 Score=235.17 Aligned_cols=248 Identities=31% Similarity=0.528 Sum_probs=148.9
Q ss_pred CCCEEEccCCcCCC--CCCccccCCCCCcEEeccc-ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 123 MLEGLVLSNNSFSG--TIPTNLSRCSNLIELFVDT-NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 123 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
+++.|+++++.+.+ .+|..++++++|++|++++ |.++|.+|..|+++++|++|++++|.+.+..+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~------------ 118 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------ 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc------------
Confidence 45556666655554 2445555555555555543 44444444444444444444444444443333
Q ss_pred EccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCC-ccEEeCCCCcC
Q 047097 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN-LRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l 278 (443)
..+..+.+|+.+++++|.+.+.+|..+..++.++++++++|.+.+.+|.... .+.. ++.+++++|++
T Consensus 119 -----------~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l 186 (313)
T d1ogqa_ 119 -----------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL 186 (313)
T ss_dssp -----------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEE
T ss_pred -----------ccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccc
Confidence 3445566677777777777777788888888888888888888777777666 4444 47777777777
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
++..|..+..+.. ..++++++...+..|..+..+++++.++++.|.+.+..+ .+..+
T Consensus 187 ~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-------~~~~~--------------- 243 (313)
T d1ogqa_ 187 TGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------KVGLS--------------- 243 (313)
T ss_dssp EEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------GCCCC---------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-------ccccc---------------
Confidence 7766666665543 357777777666666666666666666666655543221 22333
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
++|+.|++++|+++|.+|+.++++++|++|+|++|+++|.+|+ +.++++|+.+++++|+
T Consensus 244 ----------~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 244 ----------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred ----------cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 4455555666666556666666666666666666666666664 3555666666666665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.8e-26 Score=218.93 Aligned_cols=321 Identities=25% Similarity=0.354 Sum_probs=218.3
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..+++|++++++++.. +.+..+++|++|++++|.+++ ++ .++++++|++|++++|.+.+. + .++++++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc-c-ccccccccccccc
Confidence 5689999999988753 457889999999999999984 44 389999999999999999843 3 3789999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCc-------------------cccCCCCCCEEEccCCcCcccccccc
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA-------------------SIGNLSSLLAFDVRENILWGRIDSLV 214 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------------~l~~l~~L~~L~l~~n~~~~~~~~l~ 214 (443)
.++.+++..+ ......+.......+.+....+. .+.............+... ......
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 194 (384)
T d2omza2 118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLA 194 (384)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGG
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc-cccccc
Confidence 9988874332 34445666666655554322111 1122222222222222221 123455
Q ss_pred CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCE
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 294 (443)
.+++++.+++++|.+++..| ....++|++|++++|.++ .++. + ..+++|+.+++.+|.+++.. .+..+++|++
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~ 267 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-L-ASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccch-h-hcccccchhccccCccCCCC--cccccccCCE
Confidence 66777888888877775433 455677888888888776 4442 2 26778888888888777433 2667778888
Q ss_pred EecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEE
Q 047097 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 374 (443)
|+++++++++.. .+..++.++.++++.|.+.+. ..+..+++++.|++++|.+++. +. +..+ ++|+.|
T Consensus 268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--------~~~~~~~~l~~L~ls~n~l~~l-~~-l~~l-~~L~~L 334 (384)
T d2omza2 268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--------SPISNLKNLTYLTLYFNNISDI-SP-VSSL-TKLQRL 334 (384)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--------GGGGGCTTCSEEECCSSCCSCC-GG-GGGC-TTCCEE
T ss_pred eeccCcccCCCC--ccccccccccccccccccccc--------cccchhcccCeEECCCCCCCCC-cc-cccC-CCCCEE
Confidence 888888776433 256777788888877777542 2356677788888888887743 32 4443 778888
Q ss_pred eCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccC
Q 047097 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGN 427 (443)
Q Consensus 375 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 427 (443)
++++|++++ ++ .+.++++|++|++++|++++..| +.++++|+.|++++|
T Consensus 335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 888888773 33 57778888888888888874433 777888888888776
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=4.7e-25 Score=202.32 Aligned_cols=264 Identities=20% Similarity=0.214 Sum_probs=172.2
Q ss_pred CCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceecc
Q 047097 83 NQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI 162 (443)
Q Consensus 83 ~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 162 (443)
+++++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++ .+
T Consensus 19 ~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l 94 (305)
T d1xkua_ 19 DLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 94 (305)
T ss_dssp TSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BC
T ss_pred CCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cC
Confidence 34454 3444443 57889999999888555557888889999999988888666778888888999999888887 45
Q ss_pred CccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc---ccccCCCcCcEEecccCcCCCCCChhhhC
Q 047097 163 PAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQLRNLLLLDIAFNHFSGTIPPPIFN 239 (443)
Q Consensus 163 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 239 (443)
|..+ ...++.|.+.+|.+.+..+..+.....+..++...+...... ..+..+++|+.+++++|.+. .++.. .
T Consensus 95 ~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~ 169 (305)
T d1xkua_ 95 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--L 169 (305)
T ss_dssp CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--C
T ss_pred ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--c
Confidence 5432 357788888888877655556666777777777766443332 45566667777777777665 23332 2
Q ss_pred CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+++|++|++++|...+..+.. +..++.+++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 170 ~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L 247 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247 (305)
T ss_dssp CTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred CCccCEEECCCCcCCCCChhH-hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEE
Confidence 456777777777666444333 336666777777777776655666666677777777777666 345566667777777
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
++++|+++......+.........++|+.|+|++|+++
T Consensus 248 ~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 77777666544322222233344555666666666553
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.5e-24 Score=205.54 Aligned_cols=299 Identities=25% Similarity=0.351 Sum_probs=231.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.++++|++++|.+++.. .+.++++|++|++++|.+.+. + .++.+++|+.|+++++.+.+..+ ......+.....
T Consensus 66 ~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~ 139 (384)
T d2omza2 66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 139 (384)
T ss_dssp TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred CCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc-c-ccccccccccccccccccccccc--cccccccccccc
Confidence 67999999999998754 389999999999999999853 3 38899999999999998874332 334456666666
Q ss_pred ccccceeccC-------------------ccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccccccc
Q 047097 154 DTNYLVGEIP-------------------AAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214 (443)
Q Consensus 154 ~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~ 214 (443)
..+.+....+ ..+.............+.. ........+++++.+++++|.+..... ..
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~ 216 (384)
T d2omza2 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP-LG 216 (384)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG-GG
T ss_pred ccccccccccccccccccccccccccchhhhhcccccccccccccccc--ccccccccccccceeeccCCccCCCCc-cc
Confidence 5555432111 1222233333333333333 334567888999999999998877653 45
Q ss_pred CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCE
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 294 (443)
..++|+.+++++|.++. ++.+..+++|+.+++++|.+++ ++. + ..+++|++|+++++.+++.. .+..++.++.
T Consensus 217 ~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~-~~~-~-~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~ 289 (384)
T d2omza2 217 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAP-L-SGLTKLTELKLGANQISNIS--PLAGLTALTN 289 (384)
T ss_dssp GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCC-CCc-c-cccccCCEeeccCcccCCCC--cccccccccc
Confidence 67899999999999874 3568889999999999999984 443 2 37899999999999998433 3678899999
Q ss_pred EecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEE
Q 047097 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 374 (443)
+++.+|.+.+. ..+..+++++.|++++|++++.. .+..+++|++|++++|+++ .++ .+..+ ++|+.|
T Consensus 290 l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--------~l~~l~~L~~L~L~~n~l~-~l~-~l~~l-~~L~~L 356 (384)
T d2omza2 290 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--------PVSSLTKLQRLFFANNKVS-DVS-SLANL-TNINWL 356 (384)
T ss_dssp EECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--------GGGGCTTCCEEECCSSCCC-CCG-GGGGC-TTCCEE
T ss_pred ccccccccccc--cccchhcccCeEECCCCCCCCCc--------ccccCCCCCEEECCCCCCC-CCh-hHcCC-CCCCEE
Confidence 99999999753 34788999999999999997643 2678899999999999998 455 46664 899999
Q ss_pred eCcCCcCcccCchhhhcccCCCeeccccc
Q 047097 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRN 403 (443)
Q Consensus 375 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 403 (443)
++++|++++..| +.++++|+.|+|++|
T Consensus 357 ~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999996654 899999999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.1e-24 Score=197.97 Aligned_cols=242 Identities=22% Similarity=0.314 Sum_probs=161.3
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 178 (443)
..+.++-++.+++ .+|..+. +.+++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4667788887777 6676553 578899999998885444578888999999999888887667788888899999998
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCC--CCCChhhhCCCCCcEEEcccCCCCc
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFS--GTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
+|+++ .+|..+ ...++.|++..|.+.... ..+........++...+... ...+..+..+++|+.+++++|.+.
T Consensus 88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~- 163 (305)
T d1xkua_ 88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 163 (305)
T ss_dssp SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence 88887 455433 356777777777776655 44555566666666655332 223445566666777777776665
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|.. .++++++|++.+|..+...+..+..++.+++|++++|.+++..+..+.++++|++|++++|.++.. +
T Consensus 164 ~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p---- 235 (305)
T d1xkua_ 164 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P---- 235 (305)
T ss_dssp SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----
T ss_pred ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-c----
Confidence 45443 245666666666666666666666666666666666666665555666666666666666665533 2
Q ss_pred hhhhhcCCCCCCEEEccCCccc
Q 047097 336 FINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
..+..+++|++|++++|+++
T Consensus 236 --~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 236 --GGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp --TTTTTCSSCCEEECCSSCCC
T ss_pred --cccccccCCCEEECCCCccC
Confidence 33555566666666666655
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.9e-25 Score=198.61 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=144.1
Q ss_pred ECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc-cccc
Q 047097 104 NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF-HNHI 182 (443)
Q Consensus 104 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~-~n~l 182 (443)
+.++++++ .+|..+. +.+++|+|++|.++...+..|.++++|++|++++|.+....+..+..+..++.+... .+.+
T Consensus 17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 44444444 3443332 345555555555553333445555555555555555554444444444444444432 2233
Q ss_pred CCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhh
Q 047097 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG 262 (443)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 262 (443)
+...+ ..+..+++|++|++++|.+....+..+...++|+.+++++|.++ .+|...+
T Consensus 94 ~~l~~-----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f 149 (284)
T d1ozna_ 94 RSVDP-----------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149 (284)
T ss_dssp CCCCT-----------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccc-----------------------hhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHh
Confidence 32223 33444555555555555555444445555666677777777666 5555555
Q ss_pred cCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcC
Q 047097 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTN 342 (443)
Q Consensus 263 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 342 (443)
...++|+.|++++|++++..+..+..+++|+++++++|++++..|..|..+++|++|++++|.+.+..+ ..+..
T Consensus 150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~------~~~~~ 223 (284)
T d1ozna_ 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALAP 223 (284)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HHHTT
T ss_pred ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc------ccccc
Confidence 466677777777777766556666777777777777777777667777777777777777777766555 56667
Q ss_pred CCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhh
Q 047097 343 CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR 390 (443)
Q Consensus 343 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 390 (443)
+++|++|++++|++...-+..+.. ..++.+....+++.+..|..+.
T Consensus 224 ~~~L~~L~l~~N~l~C~C~~~~l~--~~l~~~~~~~~~~~C~~p~~l~ 269 (284)
T d1ozna_ 224 LRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQRLA 269 (284)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEECCCBEEESGGGT
T ss_pred ccccCEEEecCCCCCCCccchHHH--HHHHhCcCCCCceEeCCchHHc
Confidence 777777777777776433321111 1233444455555555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-23 Score=189.95 Aligned_cols=268 Identities=16% Similarity=0.189 Sum_probs=192.2
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCc
Q 047097 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 126 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
.++.++++++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+....+..+
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~--------------- 76 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--------------- 76 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT---------------
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccc---------------
Confidence 4455555555 5555442 456666666666664444456666666666666665554433333
Q ss_pred CccccccccCCCcCcEEecc-cCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCc
Q 047097 206 LWGRIDSLVQLRNLLLLDIA-FNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV 284 (443)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~l~-~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 284 (443)
..+..+..+... .+.++...+..+..+++|++|++++|.+. .++...+...++|+.+++++|++++..+.
T Consensus 77 --------~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~ 147 (284)
T d1ozna_ 77 --------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147 (284)
T ss_dssp --------TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred --------cccccccccccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChh
Confidence 344455555443 34455455777889999999999999987 55555565789999999999999976677
Q ss_pred cccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH
Q 047097 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364 (443)
Q Consensus 285 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 364 (443)
.+..+++|++|++++|.+++..+..|.++++|+++++++|.+++..+ ..+..+++|++|++++|.+.+..+..+
T Consensus 148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~------~~f~~l~~L~~L~l~~N~i~~~~~~~~ 221 (284)
T d1ozna_ 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP------HAFRDLGRLMTLYLFANNLSALPTEAL 221 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccCh------hHhhhhhhccccccccccccccccccc
Confidence 88899999999999999998888889999999999999999988777 678889999999999999996665566
Q ss_pred HhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 365 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
... ++|+.|++++|.+.+.-+ ...-...++.+....+++....|..+.+ ....+++.+.++|
T Consensus 222 ~~~-~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g 283 (284)
T d1ozna_ 222 APL-RALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283 (284)
T ss_dssp TTC-TTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred ccc-cccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence 554 889999999999885422 1111234556677777777777776654 4455566665554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.6e-23 Score=182.73 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=142.3
Q ss_pred CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCE
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 294 (443)
+...+.+++.++++++ .+|+.+. +++++|++++|.++ .+|...+..+++|++|++++|+++ .++ .+..+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence 3445566677777776 4565442 46777788877777 566555557777888888887776 333 2456777888
Q ss_pred EecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEE
Q 047097 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 374 (443)
|++++|++++ .+..+..+++|+.|++++|.+..... ..+..+.++++|++++|.++ .+|..+....+.++.+
T Consensus 82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l 153 (266)
T d1p9ag_ 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153 (266)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccccccccc-cccccccccccccccccccccceeec------cccccccccccccccccccc-eeccccccccccchhc
Confidence 8888887764 34456777788888888777766555 45566777888888888777 4444444434778888
Q ss_pred eCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCc
Q 047097 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 375 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
++++|++++..+..+..+++|+.|+|++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus 154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 88888888666677777888888888888887 77777777888888888888765
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.7e-22 Score=176.39 Aligned_cols=175 Identities=22% Similarity=0.212 Sum_probs=76.4
Q ss_pred CCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEeccc
Q 047097 147 NLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAF 226 (443)
Q Consensus 147 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~ 226 (443)
++++|++++|.+++..+..|.++++|++|++++|.++ .++ .++.+++|+.|++++|.+...+..+..+++|+.|++++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~ 109 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccc
Confidence 3444444444444333334444444444444444443 111 12333344444444443333333333444444444444
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
|.+.+..+..+..+.++++|++++|.+. .++...+..+++++.+++++|++++..+..+..+++|++|++++|+++ .+
T Consensus 110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 110 NRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred cccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence 4444333333444445555555555444 344333334444555555555544433444444444555555544444 33
Q ss_pred CccccCCCCCCEEECCCCc
Q 047097 307 SVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 307 ~~~~~~l~~L~~L~l~~n~ 325 (443)
|..+..+++|+.|++++|.
T Consensus 188 p~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CTTTTTTCCCSEEECCSCC
T ss_pred ChhHCCCCCCCEEEecCCC
Confidence 3333344444444444443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=1e-18 Score=162.67 Aligned_cols=309 Identities=22% Similarity=0.257 Sum_probs=205.0
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
++++||++++.++. +|+ ..++|++|++++|.++ .+|+. ..+|+.|++++|.++ .++.. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 46789999999874 554 3578999999999998 67765 457899999999887 44432 2469999999
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.+. .+| .++.+++|++|+++++.+.. .+.. ...+..+.+..+.... ...+..++.++.++++.|..... +
T Consensus 107 ~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~~~~-~ 178 (353)
T d1jl5a_ 107 NNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKL-P 178 (353)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSC-C
T ss_pred ccccc-ccc-chhhhccceeeccccccccc-cccc---cccccchhhccccccc-cccccccccceeccccccccccc-c
Confidence 99987 556 36789999999999988763 3332 3556677766554432 24556677888888888876532 2
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
. .....+.+...++.+. .++.. ..++.++.+++++|... .++. ...++..+.+.++.+... + ...+
T Consensus 179 ~---~~~~~~~l~~~~~~~~-~~~~~--~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~~-~---~~~~ 244 (353)
T d1jl5a_ 179 D---LPLSLESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTDL-P---ELPQ 244 (353)
T ss_dssp C---CCTTCCEEECCSSCCS-SCCCC--TTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSCC-C---CCCT
T ss_pred c---cccccccccccccccc-ccccc--ccccccccccccccccc-cccc---cccccccccccccccccc-c---cccc
Confidence 1 1233455666665554 44432 26788888888888765 3333 345677788887776532 1 2345
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccC
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 394 (443)
.+...++..+.+.+... -.......++..+.+.+ ++ ..+++|++|++++|+++ .+|.. +++
T Consensus 245 ~l~~~~~~~~~~~~l~~----------l~~~~~~~~~~~~~~~~-~~----~~~~~L~~L~Ls~N~l~-~lp~~---~~~ 305 (353)
T d1jl5a_ 245 SLTFLDVSENIFSGLSE----------LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI-ELPAL---PPR 305 (353)
T ss_dssp TCCEEECCSSCCSEESC----------CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS-CCCCC---CTT
T ss_pred ccccccccccccccccc----------ccchhcccccccCcccc-cc----ccCCCCCEEECCCCccC-ccccc---cCC
Confidence 66667776665543211 11344566666666652 22 22367888888888887 56643 567
Q ss_pred CCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCC
Q 047097 395 LNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 395 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (443)
|+.|++++|+++ .+|+. +++|+.|++++|+++ .+|.....+.
T Consensus 306 L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~ 347 (353)
T d1jl5a_ 306 LERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE 347 (353)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred CCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence 888888888887 67653 457888888888877 5665444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.2e-23 Score=199.84 Aligned_cols=362 Identities=15% Similarity=0.128 Sum_probs=244.1
Q ss_pred CcEEEEEcCCCCCceec-CccccCCCCCCEEECCCCcCcc----cCCcccCCCCCCCEEEccCCcCCCCC----Ccccc-
Q 047097 74 QRVTRLDLRNQSIGGTL-SPYVGNLSFLRYINLANNGFLG----EIPPQIGRQDMLEGLVLSNNSFSGTI----PTNLS- 143 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~- 143 (443)
.+++.||++++++++.. ...+..++++++|+|++|.++. .+..++..+++|++|++++|.+++.. ...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 46899999999998752 3446678899999999999874 34566788999999999999886321 22222
Q ss_pred CCCCCcEEecccccceec----cCccccCCCCCcEEeccccccCCCCCc-------------------------------
Q 047097 144 RCSNLIELFVDTNYLVGE----IPAAIGGLFKLERLFIFHNHITGQLPA------------------------------- 188 (443)
Q Consensus 144 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~------------------------------- 188 (443)
..++|++|++++|.+++. ++..+..+++|++|++++|.+......
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235899999999998743 345677889999999999876521100
Q ss_pred --cccCCCCCCEEEccCCcCcccc-----ccc-cCCCcCcEEecccCcCCCC----CChhhhCCCCCcEEEcccCCCCcc
Q 047097 189 --SIGNLSSLLAFDVRENILWGRI-----DSL-VQLRNLLLLDIAFNHFSGT----IPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 189 --~l~~l~~L~~L~l~~n~~~~~~-----~~l-~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~ 256 (443)
.+.....++.++++.+...... ..+ ........+++..+.+... ....+...+.++.+++++|.+...
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 0112344555555555433221 111 1122345566655544321 112344578889999998876421
Q ss_pred ----CchhhhcCCCCccEEeCCCCcCccc----CCccccCCCCCCEEecccCcccccCCccc-----cCCCCCCEEECCC
Q 047097 257 ----LPVDTGVNLPNLRQLSPNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDF-----SRLKNLSWLNMGI 323 (443)
Q Consensus 257 ----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~ 323 (443)
...........++.+++++|.+... ....+...+.++.+++++|.+.+.....+ ...+.|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 1122333567899999999988633 23345567889999999999875433222 2456899999999
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH----HhhccCCCEEeCcCCcCccc----CchhhhcccCC
Q 047097 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV----ANLSSTIKQIAMGRNRISGT----IPPEIRKLVSL 395 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~----~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L 395 (443)
+.++.... ..+...+..+++|++|+|++|++++.....+ ....+.|+.|++++|.+++. +++.+..+++|
T Consensus 322 ~~l~~~~~--~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 399 (460)
T d1z7xw1 322 CSFTAACC--SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399 (460)
T ss_dssp SCCBGGGH--HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred cchhhhhh--hhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence 98865432 1233456677899999999999976433333 33346799999999999863 55667788999
Q ss_pred CeeccccccccccCchhc----c-CCCCCCeeecccCcCccccCccc
Q 047097 396 NWLTIDRNQLTGTIPPEI----G-ELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 396 ~~L~l~~n~~~~~~p~~~----~-~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
++|+|++|+++......+ . +..+|+.|++.+|.+.++.+..+
T Consensus 400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 999999999986444433 2 34579999999999987666544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.79 E-value=6.4e-17 Score=150.30 Aligned_cols=291 Identities=26% Similarity=0.271 Sum_probs=210.5
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
.++++|+++++.++ .+|+. .++|++|++++|.++ .+|..+ .+|+.|++.+|.++ .++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence 47999999999998 67753 468999999999998 778654 68999999999887 3332 1 246999999
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+. .+|. ++.+++|+.++++++.+...+.. ...+..+.+..+... ....+..++.++.+++++|... .+
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~~ 177 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KL 177 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS-SC
T ss_pred cccccc-cccc-hhhhccceeeccccccccccccc---cccccchhhcccccc--ccccccccccceeccccccccc-cc
Confidence 999998 5564 67899999999999988765543 345666776665543 2345677889999999999876 44
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI 337 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 337 (443)
+. .....+.+...++.+. .++ .+..++.++.+++++|.... .+ ....++..+.+..+.+.....
T Consensus 178 ~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~~------ 241 (353)
T d1jl5a_ 178 PD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLPE------ 241 (353)
T ss_dssp CC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCCC------
T ss_pred cc----cccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccccccc------
Confidence 43 2334566777666555 333 35678999999999987653 22 345678888898887754322
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 417 (443)
..+.+...++..+.+.+ ++ .........++..+.+.+. ...+++|++|++++|+++ .+|.. ++
T Consensus 242 ----~~~~l~~~~~~~~~~~~-l~----~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~ 304 (353)
T d1jl5a_ 242 ----LPQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PP 304 (353)
T ss_dssp ----CCTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred ----ccccccccccccccccc-cc----cccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cC
Confidence 34567778877766652 11 1223456677777777633 234689999999999999 78854 67
Q ss_pred CCCeeecccCcCccccCccccCCCC
Q 047097 418 NLQLLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
+|+.|++++|+++ .+|+.+.+++.
T Consensus 305 ~L~~L~L~~N~L~-~l~~~~~~L~~ 328 (353)
T d1jl5a_ 305 RLERLIASFNHLA-EVPELPQNLKQ 328 (353)
T ss_dssp TCCEEECCSSCCS-CCCCCCTTCCE
T ss_pred CCCEEECCCCcCC-ccccccCCCCE
Confidence 8999999999998 67876666553
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-20 Score=181.44 Aligned_cols=336 Identities=16% Similarity=0.171 Sum_probs=223.0
Q ss_pred CCCEEECCCCcCccc-CCcccCCCCCCCEEEccCCcCCCC----CCccccCCCCCcEEecccccceec----cCcccc-C
Q 047097 99 FLRYINLANNGFLGE-IPPQIGRQDMLEGLVLSNNSFSGT----IPTNLSRCSNLIELFVDTNYLVGE----IPAAIG-G 168 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~-~ 168 (443)
+|++||++++++++. +.+.+..++++++|+|++|.++.. ++..+..+++|++|++++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 689999999999863 344566789999999999988742 345567899999999999998632 222332 2
Q ss_pred CCCCcEEeccccccCCC----CCccccCCCCCCEEEccCCcCcccc-c----cc--------------------------
Q 047097 169 LFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGRI-D----SL-------------------------- 213 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-~----~l-------------------------- 213 (443)
..+|++|++++|.+++. ++..+..+++|++|++++|.+.... . .+
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35899999999998754 3456788999999999999765432 0 01
Q ss_pred ---cCCCcCcEEecccCcCCCC----CChhh-hCCCCCcEEEcccCCCCccCc---hhhhcCCCCccEEeCCCCcCcc--
Q 047097 214 ---VQLRNLLLLDIAFNHFSGT----IPPPI-FNISSLEVISLSENRFTGSLP---VDTGVNLPNLRQLSPNGNNFTG-- 280 (443)
Q Consensus 214 ---~~l~~L~~L~l~~n~~~~~----~~~~l-~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~-- 280 (443)
.....++.++++.+..... ....+ ........+++.++.+..... .......+.++.+++.+|.+..
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 1123344444444433211 00011 123345566666665431110 0112246778888888887642
Q ss_pred ---cCCccccCCCCCCEEecccCcccccC----CccccCCCCCCEEECCCCcCCCcCCCchhhhhhh-cCCCCCCEEEcc
Q 047097 281 ---SIPVSLSNASRLEMIEFSRNQFSGRV----SVDFSRLKNLSWLNMGINNLGTGTANELDFINLL-TNCSKLERLYFN 352 (443)
Q Consensus 281 ---~~~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~Ls 352 (443)
...........++.+++++|.+.... ...+...+.++.+++++|.++..... .+...+ .....|+.++++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~--~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEECT
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc--hhhcccccccccccccccc
Confidence 12333455678999999999876432 22345678899999999987542221 111222 345689999999
Q ss_pred CCcccccCchhHHh---hccCCCEEeCcCCcCccc----Cchhhh-cccCCCeecccccccccc----CchhccCCCCCC
Q 047097 353 RNRFEGELPHSVAN---LSSTIKQIAMGRNRISGT----IPPEIR-KLVSLNWLTIDRNQLTGT----IPPEIGELKNLQ 420 (443)
Q Consensus 353 ~n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~ 420 (443)
+|.++......+.. ..++|+.|++++|++++. +++.+. ..+.|++|+|++|+|++. +++.+..+++|+
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence 99988655444433 236899999999999764 334443 467799999999999853 456677889999
Q ss_pred eeecccCcCccccCcc
Q 047097 421 LLNLGGNFLQGSIPSS 436 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~ 436 (443)
+|+|++|++++.....
T Consensus 401 ~L~Ls~N~i~~~g~~~ 416 (460)
T d1z7xw1 401 ELDLSNNCLGDAGILQ 416 (460)
T ss_dssp EEECCSSSCCHHHHHH
T ss_pred EEECCCCcCCHHHHHH
Confidence 9999999998654443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.7e-18 Score=150.29 Aligned_cols=214 Identities=16% Similarity=0.111 Sum_probs=120.6
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCC-CccccCCCCCcEEeccc-c
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI-PTNLSRCSNLIELFVDT-N 156 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n 156 (443)
++.++.+++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|.++++++++.+.. +
T Consensus 13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 444555555 4444432 57889999999888555567888889999999888877544 44577888888887754 5
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChh
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
.+....+..|.++++|++++++++.+....+ +..+. .+..+..+...++.+....+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~--------------------~l~~l~~~~~~n~~l~~i~~~~ 147 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIH--------------------SLQKVLLDIQDNINIHTIERNS 147 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTC--------------------BSSCEEEEEESCTTCCEECTTS
T ss_pred cccccccccccccccccccccchhhhccccc--ccccc--------------------cccccccccccccccccccccc
Confidence 6665666677788888888888777653221 11111 1222222233333332222222
Q ss_pred hhCC-CCCcEEEcccCCCCccCchhhhcCCCCccEE-eCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 237 IFNI-SSLEVISLSENRFTGSLPVDTGVNLPNLRQL-SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 237 l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
+..+ ..++.+++++|+++ .++...+ ..++++++ .+.+|+++...+..|.++++|++|++++|+++...+..|.+++
T Consensus 148 ~~~~~~~l~~L~l~~n~l~-~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 225 (242)
T d1xwdc1 148 FVGLSFESVILWLNKNGIQ-EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225 (242)
T ss_dssp STTSBSSCEEEECCSSCCC-EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred cccccccceeeeccccccc-ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence 2222 24555666666665 4444444 33444333 3455555533233455666666666666666543333344444
Q ss_pred CCCEE
Q 047097 315 NLSWL 319 (443)
Q Consensus 315 ~L~~L 319 (443)
+|+.+
T Consensus 226 ~L~~l 230 (242)
T d1xwdc1 226 KLRAR 230 (242)
T ss_dssp EEESS
T ss_pred ccccC
Confidence 44433
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.1e-17 Score=145.61 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred CEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecccc
Q 047097 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 180 (443)
..++++.+.+++.. .++.+.+|++|++.+|.++ .++ .+..+++|++|++++|.+++.. .+..+++++++++++|
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN 95 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence 34455666665433 3455667777777777776 343 4667777777777777766332 2666667777776666
Q ss_pred ccCCCCCccccCCCCCCEEEccCCc
Q 047097 181 HITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 181 ~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
.++. + ..+..+++|+.++++++.
T Consensus 96 ~~~~-i-~~l~~l~~L~~l~l~~~~ 118 (227)
T d1h6ua2 96 PLKN-V-SAIAGLQSIKTLDLTSTQ 118 (227)
T ss_dssp CCSC-C-GGGTTCTTCCEEECTTSC
T ss_pred cccc-c-cccccccccccccccccc
Confidence 6552 2 234455555555554443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=2.6e-17 Score=143.27 Aligned_cols=204 Identities=23% Similarity=0.300 Sum_probs=119.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
..++++.+.+++.. .++.+.+|++|++.+|.++ .++ .+.++++|++|++++|.+.+.. .+..+++|+++++++|
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN 95 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence 34455566665543 3456778888888888887 343 5788888888888888887433 3788888888888888
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChh
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
.++ .+ +.+.++++|+.++++++...+. ..+...+.++.+.+..+.+... ..+...++|++|++++|.+.+. ..
T Consensus 96 ~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~ 168 (227)
T d1h6ua2 96 PLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDL--TP 168 (227)
T ss_dssp CCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred ccc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccc--hh
Confidence 876 33 3577888899998888876532 2344455555555555443322 1233344444444444444321 12
Q ss_pred hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCC
Q 047097 237 IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+.+ +++|++|++++|++++ ++ .+..+++|++|++++|++++.. .++++++|
T Consensus 169 l~~-------------------------l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L 219 (227)
T d1h6ua2 169 LAN-------------------------LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNL 219 (227)
T ss_dssp GTT-------------------------CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred hcc-------------------------cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCC
Confidence 334 4455555555554442 22 2445555555555555554322 14555555
Q ss_pred CEEECC
Q 047097 317 SWLNMG 322 (443)
Q Consensus 317 ~~L~l~ 322 (443)
++|+++
T Consensus 220 ~~L~ls 225 (227)
T d1h6ua2 220 FIVTLT 225 (227)
T ss_dssp CEEEEE
T ss_pred CEEEee
Confidence 555553
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.74 E-value=1e-17 Score=141.68 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=92.7
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.+++++++++ .+|..+ .+++++|++++|.+++.++...+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45667777766 556544 256777777777776556555555677777777777777766677777777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
|++++..+..|.++++|++|+|++|.+++..+ ..+..+++|++++|++|++..
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~------~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBCC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCH------HHhcCCccccccccccccccc
Confidence 77777667777777777777777777776665 556667777777777777763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=147.33 Aligned_cols=220 Identities=18% Similarity=0.153 Sum_probs=140.9
Q ss_pred CEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC-
Q 047097 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG- 275 (443)
Q Consensus 197 ~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~- 275 (443)
+.++.++..++..+..+. +++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+..
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 456666666665554332 46788888888887444456777888888888888777556666666778888877654
Q ss_pred CcCcccCCccccCCCCCCEEecccCcccccCCc-cccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC-CCCCEEEccC
Q 047097 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC-SKLERLYFNR 353 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~Ls~ 353 (443)
|++....+..+..+++|+++++++|.+....+. .+..+..+..+..+.+.+..... ..+.++ ..++.+++++
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~------~~~~~~~~~l~~L~l~~ 162 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER------NSFVGLSFESVILWLNK 162 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT------TSSTTSBSSCEEEECCS
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc------cccccccccceeeeccc
Confidence 566656666777888888888888877643222 23334555555555555554443 233333 3677788888
Q ss_pred CcccccCchhHHhhccCCCE-EeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeeccc
Q 047097 354 NRFEGELPHSVANLSSTIKQ-IAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGG 426 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
|+++ .++...+.. ..++. +++++|+++...+..|.++++|++|++++|+++..-+..|.++++|+.+++.+
T Consensus 163 n~l~-~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 163 NGIQ-EIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp SCCC-EECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred cccc-ccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 8887 455544444 34433 35667777743344577788888888888888733334566667676666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=4.6e-17 Score=139.67 Aligned_cols=165 Identities=27% Similarity=0.414 Sum_probs=113.8
Q ss_pred CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+.+|++|++++|.+. .++. +. .+++|++|++++|++++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~-~l~~-l~-~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCC-Cchh-Hh-hCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccc
Confidence 456677777777665 3332 22 56777777777777764 33 25667777777777777764 22 36677777788
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeec
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLT 399 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 399 (443)
++++|.+... ..+..+++++.+++++|.+++. ..+..+ ++|+.+++++|++++ ++ .+.++++|++|+
T Consensus 118 ~l~~~~~~~~--------~~l~~l~~l~~l~~~~n~l~~~--~~~~~l-~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~ 184 (210)
T d1h6ta2 118 SLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISD-IV-PLAGLTKLQNLY 184 (210)
T ss_dssp ECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred cccccccccc--------cccccccccccccccccccccc--cccccc-ccccccccccccccc-cc-cccCCCCCCEEE
Confidence 8777766432 3466677888888888877632 233343 778888888888874 33 378888999999
Q ss_pred cccccccccCchhccCCCCCCeeeccc
Q 047097 400 IDRNQLTGTIPPEIGELKNLQLLNLGG 426 (443)
Q Consensus 400 l~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
+++|+++ .+| .+.++++|+.|+|++
T Consensus 185 Ls~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 185 LSKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 9999887 565 588889999998874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.7e-16 Score=136.04 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=16.4
Q ss_pred ccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccC
Q 047097 142 LSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 142 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus 64 l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence 33444444444444444321 1 2334444444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.8e-16 Score=134.75 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=82.4
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCE
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSW 318 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+.++++|+++++.+. .++. +. .+++|++|++++|++++..+ +.++++|++|++++|.+... + .+..+++|+.
T Consensus 38 ~l~~l~~L~l~~~~i~-~l~~-l~-~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~ 110 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTG 110 (199)
T ss_dssp HHTTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSE
T ss_pred HhcCCCEEECCCCCCC-Cccc-cc-cCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccc
Confidence 3455556666666555 3321 21 45566666666665553221 55556666666666655432 1 2455566666
Q ss_pred EECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCee
Q 047097 319 LNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
|+++++..... ..+..+++|+.|++++|++. .++ .+.. .++++.|++++|++++. + .++++++|+.|
T Consensus 111 L~l~~~~~~~~--------~~~~~l~~L~~L~l~~n~l~-~~~-~l~~-~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L 177 (199)
T d2omxa2 111 LTLFNNQITDI--------DPLKNLTNLNRLELSSNTIS-DIS-ALSG-LTSLQQLNFSSNQVTDL-K-PLANLTTLERL 177 (199)
T ss_dssp EECCSSCCCCC--------GGGTTCTTCSEEECCSSCCC-CCG-GGTT-CTTCSEEECCSSCCCCC-G-GGTTCTTCCEE
T ss_pred ccccccccccc--------cccchhhhhHHhhhhhhhhc-ccc-cccc-cccccccccccccccCC-c-cccCCCCCCEE
Confidence 66655554332 12445555666666665554 222 2322 24555555555555532 1 25555666666
Q ss_pred ccccccccccCchhccCCCCCCee
Q 047097 399 TIDRNQLTGTIPPEIGELKNLQLL 422 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~~L~~L 422 (443)
++++|+++ .++ .+..+++|+.|
T Consensus 178 ~ls~N~i~-~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 178 DISSNKVS-DIS-VLAKLTNLESL 199 (199)
T ss_dssp ECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred ECCCCCCC-CCc-cccCCCCCCcC
Confidence 66666555 333 34555555543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=7e-17 Score=136.49 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=141.2
Q ss_pred CcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccC-CccccCCCCCCEEecccCcccccCCccccCCCCCCEEEC
Q 047097 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 243 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 321 (443)
.++++.++++++ .+|..+ .+++++|++++|++++.+ +..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence 468999999998 899764 378999999999998644 566789999999999999999988999999999999999
Q ss_pred CCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccc
Q 047097 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 401 (443)
++|.+....+ ..|.++++|++|+|++|++++..|..+.. .++|+++++++|.+...... ..-...++.+.+.
T Consensus 86 s~N~l~~l~~------~~F~~l~~L~~L~L~~N~l~~i~~~~f~~-l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~ 157 (192)
T d1w8aa_ 86 GENKIKEISN------KMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLN 157 (192)
T ss_dssp CSCCCCEECS------SSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCS
T ss_pred ccccccccCH------HHHhCCCcccccccCCccccccCHHHhcC-Ccccccccccccccccccch-HHHhhhhhhhccc
Confidence 9999998877 67889999999999999999544444555 48999999999998754221 1112346677888
Q ss_pred cccccccCchhccCCCCCCeeecccCcCc
Q 047097 402 RNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 402 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
.+.+....|.. +..++.++++.|.+.
T Consensus 158 ~~~~~c~~p~~---l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 158 GGAARCGAPSK---VRDVQIKDLPHSEFK 183 (192)
T ss_dssp GGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred CCCeEeCCChh---hcCCEeeecCHhhCc
Confidence 88888777765 455778899999886
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.9e-17 Score=147.86 Aligned_cols=256 Identities=17% Similarity=0.238 Sum_probs=164.4
Q ss_pred cEEeccccccCCCCCccccCC--CCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCC-CChhhhCCCCCcEEEcc
Q 047097 173 ERLFIFHNHITGQLPASIGNL--SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT-IPPPIFNISSLEVISLS 249 (443)
Q Consensus 173 ~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~ 249 (443)
+.++++++.+. |..+..+ .....+.+................+|++|+++++.++.. +...+.++++|++|+++
T Consensus 3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCC---chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 46777776654 2222211 234556665554443333334556789999998877643 33446778899999999
Q ss_pred cCCCCccCchhhhcCCCCccEEeCCCC-cCccc-CCccccCCCCCCEEecccC-ccccc-CCccc-cCCCCCCEEECCCC
Q 047097 250 ENRFTGSLPVDTGVNLPNLRQLSPNGN-NFTGS-IPVSLSNASRLEMIEFSRN-QFSGR-VSVDF-SRLKNLSWLNMGIN 324 (443)
Q Consensus 250 ~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~-~~l~~L~~L~l~~n 324 (443)
++.+.+..+..+. .+++|++|++++| .++.. +......+++|++|+++++ .+++. ....+ ...++|+.|+++++
T Consensus 80 ~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 80 GLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp TCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred ccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence 9988766666555 7888999999885 45422 2223456888999999886 44432 11222 23578999998865
Q ss_pred cCCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhccCCCEEeCcCC-cCcccCchhhhcccCCCeecccc
Q 047097 325 NLGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSSTIKQIAMGRN-RISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 325 ~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
...- .+..+......+++|++|++++| .+++.....+... ++|++|++++| .+++.....++.+++|+.|++++
T Consensus 159 ~~~i---~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 159 RKNL---QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp GGGS---CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred cccc---ccccccccccccccccccccccccCCCchhhhhhccc-CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 3110 11223344567889999999887 4776676677764 78999999885 67777777788889999999988
Q ss_pred cccccc-CchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 403 NQLTGT-IPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 403 n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
| ++.. ++.....+|+| .+..+.+++..+..+++.
T Consensus 235 ~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~~ 269 (284)
T d2astb2 235 I-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNK 269 (284)
T ss_dssp S-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSST
T ss_pred C-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCcc
Confidence 8 3322 33323445554 457778877766665543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=8.2e-16 Score=130.59 Aligned_cols=161 Identities=24% Similarity=0.403 Sum_probs=79.6
Q ss_pred CCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 97 LSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 97 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
++++++|++++|.++. + +.+..+++|++|++++|.+++. +. +.++++|++|++++|.+.. ++ .+.++++|+.|+
T Consensus 39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccccc-cc-cccccccccccc
Confidence 3444444444444442 1 1244444555555555544422 11 4445555555555544431 22 244555555555
Q ss_pred ccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCcc
Q 047097 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 256 (443)
++++..... ..+..+++|+.+++++|.+... +.+..+++++.|++.+|.+++. ..+.++++|++|++++|+++ .
T Consensus 113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~-~ 186 (199)
T d2omxa2 113 LFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS-D 186 (199)
T ss_dssp CCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-C
T ss_pred ccccccccc--cccchhhhhHHhhhhhhhhccc-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC-C
Confidence 555444321 2344555555555555554332 2345556666666666666532 23566677777777777666 4
Q ss_pred CchhhhcCCCCccEE
Q 047097 257 LPVDTGVNLPNLRQL 271 (443)
Q Consensus 257 ~~~~~~~~~~~L~~L 271 (443)
++. +. .+++|++|
T Consensus 187 i~~-l~-~L~~L~~L 199 (199)
T d2omxa2 187 ISV-LA-KLTNLESL 199 (199)
T ss_dssp CGG-GG-GCTTCSEE
T ss_pred Ccc-cc-CCCCCCcC
Confidence 442 22 56666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.1e-17 Score=145.68 Aligned_cols=255 Identities=16% Similarity=0.115 Sum_probs=170.8
Q ss_pred cEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcCcEEeccc
Q 047097 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAF 226 (443)
Q Consensus 149 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L~~L~l~~ 226 (443)
+.+|++++.+.......+.. .....+.++...+.... .......+|++|+++++.+.... ..+..+++|++|++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 47888887764222222211 13456666655554322 23345568999999998876544 5678899999999999
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccC-CCCccCchhhhcCCCCccEEeCCCCc-Cccc-CCccc-cCCCCCCEEecccC--
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSEN-RFTGSLPVDTGVNLPNLRQLSPNGNN-FTGS-IPVSL-SNASRLEMIEFSRN-- 300 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~l-~~~~~L~~L~l~~n-- 300 (443)
+.+++..+..++.+++|++|+++++ .+++..-..+...+++|++|++++|. +++. +...+ ..++.|+.|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 9988777788889999999999996 45432222334478999999999864 4422 22223 34578999999876
Q ss_pred ccccc-CCccccCCCCCCEEECCCCc-CCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhccCCCEEeCc
Q 047097 301 QFSGR-VSVDFSRLKNLSWLNMGINN-LGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSSTIKQIAMG 377 (443)
Q Consensus 301 ~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L~~L~l~ 377 (443)
.+++. +......+++|++|++++|. +++... ..+..+++|++|++++| .+++.....+... ++|+.|+++
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~-~~L~~L~l~ 233 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------QEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVF 233 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECT
T ss_pred ccccccccccccccccccccccccccCCCchhh------hhhcccCcCCEEECCCCCCCChHHHHHHhcC-CCCCEEeee
Confidence 34432 22234578999999999864 544333 56778999999999996 6776666667664 889999999
Q ss_pred CCcCccc-CchhhhcccCCCeeccccccccccCchhccCC
Q 047097 378 RNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416 (443)
Q Consensus 378 ~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 416 (443)
++ +++. +......+++ |.+..+.+++..++.++..
T Consensus 234 ~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~~~ 269 (284)
T d2astb2 234 GI-VPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNK 269 (284)
T ss_dssp TS-SCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCSST
T ss_pred CC-CCHHHHHHHHHhCcc---ccccCccCCCCCCCccCcc
Confidence 88 4433 3333344555 5567777776666665543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=6.1e-16 Score=143.34 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred CccccCCCCCcEEecccccceec----cCccccCCCCCcEEeccccccCCC---CCccccCCCCCCEEEccCCcCccccc
Q 047097 139 PTNLSRCSNLIELFVDTNYLVGE----IPAAIGGLFKLERLFIFHNHITGQ---LPASIGNLSSLLAFDVRENILWGRID 211 (443)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~ 211 (443)
...+....+|+.|++++|.+... +...+...++|+.++++++..... .+..+. ....
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~----------------~l~~ 87 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LLLQ 87 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HHHH
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH----------------HHHH
Confidence 33445556667777766665432 222344555666666655433211 000000 0002
Q ss_pred cccCCCcCcEEecccCcCCCC----CChhhhCCCCCcEEEcccCCCCccCchh------------hhcCCCCccEEeCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGT----IPPPIFNISSLEVISLSENRFTGSLPVD------------TGVNLPNLRQLSPNG 275 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~------------~~~~~~~L~~L~l~~ 275 (443)
.+...++|++|++++|.++.. +...+...++|++|++++|.+....... .....+.|+.+.+++
T Consensus 88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~ 167 (344)
T d2ca6a1 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 167 (344)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence 233445566666666555433 1222334566666666666543111000 011345666666666
Q ss_pred CcCccc----CCccccCCCCCCEEecccCccccc-----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCC
Q 047097 276 NNFTGS----IPVSLSNASRLEMIEFSRNQFSGR-----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346 (443)
Q Consensus 276 n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 346 (443)
|.++.. +...+..++.+++|++++|.+... ....+..+++|+.|++++|.++.... ..+...+..+++|
T Consensus 168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~--~~L~~~l~~~~~L 245 (344)
T d2ca6a1 168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAIALKSWPNL 245 (344)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH--HHHHHHGGGCTTC
T ss_pred ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc--ccccccccccccc
Confidence 655421 222234455666666666665432 12224455666666666665533211 1122445556666
Q ss_pred CEEEccCCcccccCchhHHhh-----ccCCCEEeCcCCcCccc----Cchhhh-cccCCCeecccccccc
Q 047097 347 ERLYFNRNRFEGELPHSVANL-----SSTIKQIAMGRNRISGT----IPPEIR-KLVSLNWLTIDRNQLT 406 (443)
Q Consensus 347 ~~L~Ls~n~l~~~~p~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~~~ 406 (443)
++|++++|.+++.....++.. .+.|+.|++++|+++.. +...+. ++++|+.|++++|++.
T Consensus 246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 666666666654333333221 12355555555554432 112221 3344555555555443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.57 E-value=7.4e-16 Score=142.76 Aligned_cols=220 Identities=17% Similarity=0.218 Sum_probs=149.7
Q ss_pred cccCCCcCcEEecccCcCCCC----------CChhhhCCCCCcEEEcccCCCCccCchh---hhcCCCCccEEeCCCCcC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGT----------IPPPIFNISSLEVISLSENRFTGSLPVD---TGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~----------~~~~l~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l 278 (443)
.+...++|+.++++++..... +...+..+++|++|++++|.+....... .....++|++|++++|.+
T Consensus 54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l 133 (344)
T d2ca6a1 54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133 (344)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence 344556666666665543211 2234566889999999999887432221 122578999999999987
Q ss_pred cccCCc-------------cccCCCCCCEEecccCcccccC----CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 279 TGSIPV-------------SLSNASRLEMIEFSRNQFSGRV----SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 279 ~~~~~~-------------~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
+..-.. .....+.|+.+.+++|.+.... ...+...+.++.|+++.|.+..... .......+.
T Consensus 134 ~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~-~~~l~~~l~ 212 (344)
T d2ca6a1 134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLA 212 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-HHHHHTTGG
T ss_pred cccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccccc-ccchhhhhc
Confidence 521111 1235678999999999886432 2235678899999999998864211 001234577
Q ss_pred CCCCCCEEEccCCcccccCchhHH---hhccCCCEEeCcCCcCcccCchh----hhc--ccCCCeecccccccccc----
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVA---NLSSTIKQIAMGRNRISGTIPPE----IRK--LVSLNWLTIDRNQLTGT---- 408 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~~L~~L~l~~n~l~~~~~~~----l~~--l~~L~~L~l~~n~~~~~---- 408 (443)
.+++|+.|++++|+++......+. ...++|+.|++++|.+++..... +.. .++|++|++++|+++..
T Consensus 213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~ 292 (344)
T d2ca6a1 213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292 (344)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence 889999999999998754333222 22478999999999998753333 333 46799999999998853
Q ss_pred Cchhcc-CCCCCCeeecccCcCccc
Q 047097 409 IPPEIG-ELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 409 ~p~~~~-~l~~L~~L~l~~n~l~~~ 432 (443)
+...+. ++++|+.|++++|++...
T Consensus 293 l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 293 LKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHccCCCCCEEECCCCcCCCc
Confidence 344443 578999999999999743
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.5e-14 Score=117.94 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhh
Q 047097 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANL 367 (443)
Q Consensus 288 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 367 (443)
++.++++|++++|+++.. +..+..+++|+.|++++|.+.... .+..+++|++|++++|+++ .+|..++..
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~--------~~~~l~~L~~L~ls~N~i~-~l~~~~~~~ 85 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD--------GFPLLRRLKTLLVNNNRIC-RIGEGLDQA 85 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEEC--------CCCCCSSCCEEECCSSCCC-EECSCHHHH
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccC--------CcccCcchhhhhccccccc-CCCcccccc
Confidence 334444555555544422 233344455555555555544321 1344555666666666655 333333332
Q ss_pred ccCCCEEeCcCCcCcccC-chhhhcccCCCeeccccccccccCch----hccCCCCCCeee
Q 047097 368 SSTIKQIAMGRNRISGTI-PPEIRKLVSLNWLTIDRNQLTGTIPP----EIGELKNLQLLN 423 (443)
Q Consensus 368 ~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~l~~L~~L~ 423 (443)
.+.|+.|++++|+++..- ...+..+++|+.|++++|.++ ..|. .+..+|+|+.||
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 356666666666665321 134666777777777777776 3332 456677777766
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.7e-14 Score=117.63 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=45.3
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+.+...+++|+|++|+|+ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 344455566666666655 33444445555666666666555 232 345555555555555555533333334455555
Q ss_pred EEeccccccC
Q 047097 174 RLFIFHNHIT 183 (443)
Q Consensus 174 ~L~l~~n~l~ 183 (443)
+|++++|.+.
T Consensus 91 ~L~L~~N~i~ 100 (162)
T d1a9na_ 91 ELILTNNSLV 100 (162)
T ss_dssp EEECCSCCCC
T ss_pred cceecccccc
Confidence 5555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=5.3e-14 Score=109.01 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=33.6
Q ss_pred EEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccc
Q 047097 102 YINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181 (443)
Q Consensus 102 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 181 (443)
+|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|++|++++|.
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence 4444444444 222 2444444444444444444 334444444444444444444442 22 24444444444444444
Q ss_pred cC
Q 047097 182 IT 183 (443)
Q Consensus 182 l~ 183 (443)
++
T Consensus 77 i~ 78 (124)
T d1dcea3 77 LQ 78 (124)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.8e-13 Score=105.94 Aligned_cols=101 Identities=24% Similarity=0.274 Sum_probs=65.6
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC
Q 047097 125 EGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 125 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
|+|++++|.++ .++ .+..+++|++|++++|+++ .+|+.++.+++|++|++++|.+++ +| .+.++++|+.+++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 57888888887 444 3777888888888888877 566677778888888888887773 33 3666666666666666
Q ss_pred cCcccc--ccccCCCcCcEEecccCcCC
Q 047097 205 ILWGRI--DSLVQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 205 ~~~~~~--~~l~~l~~L~~L~l~~n~~~ 230 (443)
.+...+ ..+..+++|+.+++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 555433 33444455555555554443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.33 E-value=7.7e-14 Score=117.71 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=102.5
Q ss_pred CCccEEeCCCC--cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC
Q 047097 266 PNLRQLSPNGN--NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC 343 (443)
Q Consensus 266 ~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 343 (443)
...+.+++.+. .+. .++..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.++.... ....+
T Consensus 23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~-------~~~~~ 92 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIEN-------LDAVA 92 (198)
T ss_dssp TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSS-------HHHHH
T ss_pred cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccccc-------ccccc
Confidence 34555666543 222 455667888889999999998874 33 47788889999998888865432 22334
Q ss_pred CCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC-chhhhcccCCCeeccccccccccCch----------h
Q 047097 344 SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI-PPEIRKLVSLNWLTIDRNQLTGTIPP----------E 412 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~----------~ 412 (443)
++|++|++++|+++ .++ .+..+ ++|+.|++++|.+++.. ...+..+++|+.|++++|++....+. .
T Consensus 93 ~~L~~L~l~~N~i~-~l~-~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v 169 (198)
T d1m9la_ 93 DTLEELWISYNQIA-SLS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCCEEECSEEECC-CHH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred cccccccccccccc-ccc-ccccc-ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence 57888888888887 333 35554 77888888888887432 14678888888888888887643332 1
Q ss_pred ccCCCCCCeeecccCcCc
Q 047097 413 IGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 413 ~~~l~~L~~L~l~~n~l~ 430 (443)
+..+|+|+.|| +.+++
T Consensus 170 i~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCCEES--SGGGT
T ss_pred HHHCCCcCEeC--CccCC
Confidence 56688888876 55554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.7e-11 Score=98.71 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=43.4
Q ss_pred CcEEEcccCCCCccCchhhhcCCCCccEEeCCCC-cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEEC
Q 047097 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN-NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 243 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 321 (443)
.++++.+++.+. ..|..+. .+++|++|++++| .++...+..|..+++|+.|++++|+++...+..|..+++|++|+|
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCeEEecCCCCc-cCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 344555555554 4444433 4555555555443 244333344555555555555555555544555555555555555
Q ss_pred CCCcCCCc
Q 047097 322 GINNLGTG 329 (443)
Q Consensus 322 ~~n~l~~~ 329 (443)
++|.++..
T Consensus 88 s~N~l~~l 95 (156)
T d2ifga3 88 SFNALESL 95 (156)
T ss_dssp CSSCCSCC
T ss_pred cCCCCccc
Confidence 55555443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.24 E-value=6.5e-14 Score=118.17 Aligned_cols=109 Identities=21% Similarity=0.265 Sum_probs=54.2
Q ss_pred CccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCC
Q 047097 91 SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF 170 (443)
Q Consensus 91 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 170 (443)
+..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. + +.+..++
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~ 115 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV 115 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence 344556666666666666665 232 3555666666666666555 344434444455555555555542 1 2344455
Q ss_pred CCcEEeccccccCCCCC-ccccCCCCCCEEEccCC
Q 047097 171 KLERLFIFHNHITGQLP-ASIGNLSSLLAFDVREN 204 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n 204 (443)
+|++|++++|.++.... ..+..+++|+.|++++|
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred cccccccccchhccccccccccCCCccceeecCCC
Confidence 55555555555442110 22344444444444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.9e-11 Score=96.58 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=56.5
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCC-cCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANN-GFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
++.+++.+. ..|..+.++++|++|++++| .++...+.+|.++++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 91 (156)
T d2ifga3 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (156)
T ss_dssp EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence 344444443 23445666667777777554 3554444556666666666666666665445556666666666666666
Q ss_pred ceeccCccccCCCCCcEEecccccc
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHI 182 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l 182 (443)
++ .+|.......+|+.|++++|.+
T Consensus 92 l~-~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 92 LE-SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred Cc-ccChhhhccccccccccCCCcc
Confidence 65 3333322333455555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=8e-08 Score=77.24 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=60.6
Q ss_pred hhcCCCCCCEEEccCCcccccC--chhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCch-----
Q 047097 339 LLTNCSKLERLYFNRNRFEGEL--PHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP----- 411 (443)
Q Consensus 339 ~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~----- 411 (443)
....+++|++|++++|+++..- +..+.. +++|+.|++++|.++..-+.......+|+.|++++|++.+...+
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~ 138 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence 3456788999999999888432 223334 47899999999988854332334456788899999988754332
Q ss_pred --hccCCCCCCeeecccCcCc
Q 047097 412 --EIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 412 --~~~~l~~L~~L~l~~n~l~ 430 (443)
.+..+|+|+.|| |.++.
T Consensus 139 ~~i~~~~P~L~~LD--g~~v~ 157 (162)
T d1koha1 139 SAIRERFPKLLRLD--GHELP 157 (162)
T ss_dssp HHHHTTSTTCCEET--TEECC
T ss_pred HHHHHHCCCCCEEC--cCCCc
Confidence 356788888775 55553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.8e-08 Score=78.06 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=49.1
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCch-hHHhhccCCCEEeCcCCcCcccCc---
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH-SVANLSSTIKQIAMGRNRISGTIP--- 386 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~--- 386 (443)
..+++|++|++++|.++...+ +...+..+++|+.|++++|.++ .++. ..... ..|+.+++++|.+++...
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~----~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~ 135 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDD----MSSIVQKAPNLKILNLSGNELK-SERELDKIKG-LKLEELWLDGNSLSDTFRDQS 135 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSG----GGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHH
T ss_pred HhCCCCCEeeCCCccccCCch----hHHHHhhCCcccccccccCccc-cchhhhhhhc-cccceeecCCCCcCcCcccch
Confidence 456666666666666654322 1133455677777777777776 3333 22222 457777777777765433
Q ss_pred ----hhhhcccCCCeec
Q 047097 387 ----PEIRKLVSLNWLT 399 (443)
Q Consensus 387 ----~~l~~l~~L~~L~ 399 (443)
..+..+|+|+.||
T Consensus 136 ~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 136 TYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHTTSTTCCEET
T ss_pred hHHHHHHHHCCCCCEEC
Confidence 2356788888876
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.13 E-value=1.3e-06 Score=70.21 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=41.0
Q ss_pred hhcCCCCCCEEEccCCcccccCchhHHh---hccCCCEEeCcCCcCccc----CchhhhcccCCCeeccccccccc----
Q 047097 339 LLTNCSKLERLYFNRNRFEGELPHSVAN---LSSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTIDRNQLTG---- 407 (443)
Q Consensus 339 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~---- 407 (443)
.+...++|++|+|++|.+.+.....+.. ..+.|+.|++++|.+++. +...+...++|++|++++|++..
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence 3444444555555555444222211111 124455555555554432 22234455566666666654331
Q ss_pred ---cCchhccCCCCCCeeecccCc
Q 047097 408 ---TIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ---~~p~~~~~l~~L~~L~l~~n~ 428 (443)
.+.+.+...+.|+.|+++.+.
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCccEeeCcCCC
Confidence 123334445666666665553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.04 E-value=2e-06 Score=69.11 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=44.6
Q ss_pred CCCCccEEeCCCC-cCccc----CCccccCCCCCCEEecccCcccccCCc----cccCCCCCCEEECCCCcCCCcCCCch
Q 047097 264 NLPNLRQLSPNGN-NFTGS----IPVSLSNASRLEMIEFSRNQFSGRVSV----DFSRLKNLSWLNMGINNLGTGTANEL 334 (443)
Q Consensus 264 ~~~~L~~L~l~~n-~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
+.++|++|+++++ .++.. +...+...+.|++|++++|.+.+.... .+...+.|+.|++++|.++.... .
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~--~ 90 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--A 90 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--H
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH--H
Confidence 4566777777653 34321 222344555666666666665532222 12334555666665555543211 1
Q ss_pred hhhhhhcCCCCCCEEEccCCcc
Q 047097 335 DFINLLTNCSKLERLYFNRNRF 356 (443)
Q Consensus 335 ~~~~~l~~~~~L~~L~Ls~n~l 356 (443)
.+...+...++|++|++++|.+
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHHhCCcCCEEECCCCcC
Confidence 2334455555555555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.82 E-value=1e-05 Score=64.72 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=46.5
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHh---hccCCCEEeCcCCcCccc----CchhhhcccCCCeecc--ccccccc-
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVAN---LSSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTI--DRNQLTG- 407 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~~~~- 407 (443)
..+...++|++|++++|.++...-..++. ..+.++.+++++|.+... +...+...++|+.++| ++|.+..
T Consensus 40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~ 119 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 119 (166)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence 44445555555555555554332222211 124566666666655432 2234555666665333 4455543
Q ss_pred ---cCchhccCCCCCCeeecccCcC
Q 047097 408 ---TIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 408 ---~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.+.+.+...+.|+.|+++.+..
T Consensus 120 ~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 120 VEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2344455666777777766544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.43 E-value=3e-05 Score=61.91 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=42.6
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhh---ccCCCEEeC--cCCcCcc--
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANL---SSTIKQIAM--GRNRISG-- 383 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l--~~n~l~~-- 383 (443)
...++|+.|++++|.++.... ..+...+...++++.+++++|.+.+..-..+... .+.|+.+++ ++|.+..
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~--~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~ 120 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 120 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred hcCCccCeeeccCCcccHHHH--HHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence 344455555555554432111 1122334445555666665555543322222211 244554333 3444443
Q ss_pred --cCchhhhcccCCCeeccccccc
Q 047097 384 --TIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 384 --~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
.+...+...++|+.|+++.+..
T Consensus 121 ~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 121 EMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2334455667777777766543
|